Citrus Sinensis ID: 009226

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGYCIMVTKLPCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHTRWKSELQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccEEEEccccEEEEEccHHHHHHHHcccccEEEEEEEccEEEEcccccEEEccccHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHcccEEEccccEEEEEEccccccEEEEEEccccEEEEcEEEEccccccccccccccHHHHHHHccccccccccEEEEEEEEEcccccccccccEEEccccccccccccEEEEEEEcccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccccccccccHHHHHHHcccEEEEEEcccccccccEEccEEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccEEcHHHHHHHHcccccccccccccccccccccccccHHHccccccccEEccccHHHHccccHHHEEEEcccEEEEEEEEEccEEEEEcccEEEEccccHHHHHHcccHcHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHccEEEccccccEEEEEccccEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccEEEccEEEEEEEEEccccccccccEEEEEccHHccccccccEEEEEEEccccccccccEEEEEEEEEEccccHHHHHHHHHHHHcccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccEccccccHHHHHHccccEEEEEEccHHHEHHHHEEcEEEEEEHccccccHHHcc
Coil and Loop (DISEMBL)
mtgneseselpvppyppieptafDLIVIGTGLPESVISAAAsasgksvlhldpnpfygshfsslSIADLTHflnshstpssvcpdplysdveiSNYASRLLsqhprnfnldvsgprvlFCADHAVDLMLKSGASHYlefksidatfmldadaklcsvpdsraaifkdkslglmEKNQLMRFFKLVQGhlsldeseennvriseedldspFAEFLtkmklphkIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGAliypiygqgelpqaFCRRAAVKGCLYVLRMPvislltdqnsgsykgvrlasgqdilshklvldpsftvpgslasSHQQLQESFQAfslsdnkgkvargicitrsslkpdlsnflvifpprslfpeqvTSIRVLQlggnlavcpLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTgtagnsstaqsedmeeakPTLLWSALYIQDLSLGYCImvtklpcfqdviRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHTRWKSELQ
Flexible Loop (DISEMBL)
mtgneseselpvppyppIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISlltdqnsgsYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAfslsdnkgKVARGICItrsslkpdlsnFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGnsstaqsedmeEAKPTLLWSALYIQDLSLGYCIMVTKLPCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHtrwkselq
Low Complexity Region (SEG)
MTGNeseselpvppyppiepTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGYCIMVTKLPCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHTRWKSELQ
Disordered region (IsUnstruct)
******************EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHS***SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLS******************PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV************************GKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTG******************TLLWSALYIQDLSLGYCIMVTKLPCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHTRW*****
Disordered Region (DISOPRED)
***************PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSL***************LSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD*******L*HAALSALQKLLVTGTAG***********EAKPTLLWSALYIQDLSLGYC***T**PCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHTRW*****
Disordered Region (DISEMBL)
***********VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTG***************AKPTLLWSALYIQDLSLGYCIMVTKLPCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHTRWKSELQ
Disordered Region (DISPRO)
******ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHS***SVCPDPLYSDVEISNYASR**SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLA***********AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGYCIMVTKLPCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHS*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGYCIMVTKLPCFQDVIRKKHYVLIILTCNACLIESCVYLGSVWIYYLHSHTRWKSELQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	539	2.2.26 [Sep-21-2011]
Q9V8W3	511	Rab proteins geranylgeran	yes	no	0.556	0.587	0.340	2e-40
P32864	603	Rab proteins geranylgeran	yes	no	0.723	0.646	0.276	7e-32
O93831	640	Rab proteins geranylgeran	N/A	no	0.714	0.601	0.275	1e-31
P24386	653	Rab proteins geranylgeran	yes	no	0.604	0.499	0.299	2e-31
Q10305	440	Probable secretory pathwa	yes	no	0.779	0.954	0.25	2e-31
Q9QZD5	621	Rab proteins geranylgeran	yes	no	0.614	0.533	0.296	4e-31
Q9QXG2	665	Rab proteins geranylgeran	no	no	0.601	0.487	0.289	1e-30
P37727	650	Rab proteins geranylgeran	no	no	0.604	0.501	0.288	4e-29
P26374	656	Rab proteins geranylgeran	no	no	0.602	0.495	0.280	1e-28
P50396	447	Rab GDP dissociation inhi	no	no	0.582	0.702	0.270	2e-28

>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 26/326 (7%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P  FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P
Sbjct: 6   PEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65

Query: 80  SSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS 131
            S   +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS
Sbjct: 66  HSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKS 124

Query: 132 GASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSL 191
               Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F          
Sbjct: 125 NICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN----- 178

Query: 192 DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251
           D  E+     S E     F E+L   ++  KI S V+ AIAM        E       G+
Sbjct: 179 DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GM 231

Query: 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS 311
            R   +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS
Sbjct: 232 QRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNS 289

Query: 312 GSYKGVRLASGQDILSHKLVLDPSFT 337
             +  +  ++G+ + +  +V  P +T
Sbjct: 290 NEF--LLSSAGKTLRAKNVVSAPGYT 313

Binds unprenylated Rab proteins, presents it to the catalytic component B, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab to a protein acceptor.
Drosophila melanogaster (taxid: 7227)

>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2

 Score =  139 bits (349), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 201/445 (45%), Gaps = 55/445 (12%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           P P   P   D+++ GTG+ ESV++AA +  G +VLH+D N +YG   ++L++  +  ++
Sbjct: 38  PLPATTPDKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWV 97

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQ---HPRNFNLDVSGPRVLFCADHAVDLMLK 130
           N  +  S  C    Y + ++  Y S L+       R+F +D+S P++LF     + +++K
Sbjct: 98  NEVNEGSVSC----YKNAKL--YVSTLIGSGKYSSRDFGIDLS-PKILFAKSDLLSILIK 150

Query: 131 SGASHYLEFKSIDA--TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGH 188
           S    YLEF+S+    T+  D   KL    +++  IF D++L LM K  LM+F K V   
Sbjct: 151 SRVHQYLEFQSLSNFHTYENDCFEKLT---NTKQEIFTDQNLPLMTKRNLMKFIKFVLNW 207

Query: 189 LSLDESEENNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247
                  E    I +   +   ++FL  K KL       ++++I +  YD  V     K 
Sbjct: 208 -------EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLC-YDLNV-----KV 254

Query: 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLT 307
            + + R+  Y +S   +     AL     G GEL Q FCR AAV G  Y L   ++S   
Sbjct: 255 PEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLNEKLVSF-- 311

Query: 308 DQNSGSYKGVRLASGQDI-LSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVA 366
              + + K      G  + +S K+++ P+     S     QQ Q              V 
Sbjct: 312 ---NPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHVPQQQYQ--------------VH 354

Query: 367 RGICITRSS----LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFS 422
           R  CI  +          S  +V+FPP SL       ++   LG    +CP G  V Y S
Sbjct: 355 RLTCIVENPCTEWFNEGESAAMVVFPPGSLKSGNKEVVQAFILGAGSEICPEGTIVWYLS 414

Query: 423 ALCDEVNQGKKLLHAALSALQKLLV 447
              ++  + +  + AAL A++  L+
Sbjct: 415 T-TEQGPRAEMDIDAALEAMEMALL 438

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 212/439 (48%), Gaps = 54/439 (12%)

Query: 24  DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF---LNSHSTPS 80
           D+++IGTGL ES+++AA S  G  VLH+D N +YG   S+L+I  L  +   +NS     
Sbjct: 5   DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64

Query: 81  SVCPDPLYSDVEISNYASRLLSQHP-RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                  + D +I     +  +Q+  +++ +D++ P+++FC    + L++KS    YLEF
Sbjct: 65  -------FQDAQIYIPGGKQSNQYTSKDYGIDLT-PKIMFCQSDLLSLLIKSRVYRYLEF 116

Query: 140 KSIDATFMLDADAKLCSV-PDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENN 198
           +S+    + + D     V   ++  IF DKSL LM K    R+       L LD   +  
Sbjct: 117 QSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTK----RYLMKFLKFLLLDPDYKQR 172

Query: 199 VRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
           V+      D+P   FL +  KL     + ++Y+I ++ Y ++ S     T+  + R+  +
Sbjct: 173 VKPY---ADTPIQVFLQQEFKLEEPQINELVYSIGLS-YKEQTS-----TKQALIRMKRF 223

Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV-----ISLLTDQNSG 312
            SS   +      ++    G GEL Q FCR AAV G  Y L   +     IS +   N G
Sbjct: 224 LSSFDVY-GKFPCMVSKFGGPGELSQGFCRSAAVAGTTYKLNTNLTDFDPISKIAHFNDG 282

Query: 313 SYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICIT 372
           S+  +         + K+++ P+  +P  L SS+ ++ E+ Q +        V R + + 
Sbjct: 283 SHIKI---------NEKIIISPT-QLPKFLQSSYNKVVENLQPYY-------VTRLVTVV 325

Query: 373 RSSLKP----DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEV 428
           R   K     + S+ +V+FPP SL  +   S++V+   GN  VCP G  + + S +  ++
Sbjct: 326 RRDCKEWMSGNESSAIVVFPPHSLPTDNQHSVQVIIQNGNSGVCPDGQAIWFSSTVEQDL 385

Query: 429 NQGKKLLHAALSALQKLLV 447
           ++ K  L +A   ++  L+
Sbjct: 386 SRAKVDLESAFEKMETSLL 404

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Candida albicans (taxid: 5476)

>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 174/371 (46%), Gaps = 45/371 (12%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        + ++  VP SRA +F
Sbjct: 225 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGRVEQVPCSRADVF 282

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    +  +    I+       F E+L   KL   ++ 
Sbjct: 283 NSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEIT-------FYEYLKTQKLTPNLQY 335

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
           IV+++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 336 IVMHSIAM------TSETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCF 387

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S 
Sbjct: 388 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSR 446

Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
            Q  Q              ++R + IT RS LK D    + I    +  P    ++RV++
Sbjct: 447 VQYRQ--------------ISRAVLITDRSVLKTDSDQQISILTVPAEEP-GTFAVRVIE 491

Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ +  C      ++ L    S +QKL V  T       Q E    
Sbjct: 492 LCSSTMTCMKGTYLVHLT--CTSSKTAREDLE---SVVQKLFVPYTEMEIENEQVE---- 542

Query: 465 AKPTLLWSALY 475
            KP +LW ALY
Sbjct: 543 -KPRILW-ALY 551

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Homo sapiens (taxid: 9606)

>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 216/488 (44%), Gaps = 68/488 (13%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E V+S   S  GK VLH+D N +YG+  +SL++  L         P   
Sbjct: 5   YDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFR----PGEQ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  D               R++ +D+  P+ L       ++++ +  + Y+EFK I
Sbjct: 61  RPESLGRD---------------RDWCVDLV-PKFLMANGDLTNILIYTDVTRYIEFKQI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
             +++   D ++  VP +     K   + L EK +  +F + V  +   D S   ++ I 
Sbjct: 105 AGSYVY-RDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINID 163

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
            + ++S F +F     L    +  + +A+A+   D  + +   +TR+   R+ LY SSI 
Sbjct: 164 RDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIA 216

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           +F  +    IYP+YG GELPQ F R +A+ G  Y+L  PV  ++   + G   GVR  SG
Sbjct: 217 KFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVR--SG 271

Query: 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL--KPD 379
             +   K ++ DPS+             +E  ++       G++ R ICI    +    +
Sbjct: 272 DQVAKAKQIIGDPSY------------FREKVRSV------GRLVRAICILNHPIPNTDN 313

Query: 380 LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD------EVNQGKK 433
           L +  +I P   +  ++   I +  +     VCP G ++   S + +      E+  G K
Sbjct: 314 LDSVQIIIPQNQV--KRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLK 371

Query: 434 LLHAALSALQKL------LVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGYCIMV 487
           LL   + +  ++      +  GT      ++S D      TL      I     G  +++
Sbjct: 372 LLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDVRDIYKRMTGTDLVL 431

Query: 488 TKLPCFQD 495
            + P  +D
Sbjct: 432 KQRPKMED 439

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2

 Score =  136 bits (343), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 175/378 (46%), Gaps = 47/378 (12%)

Query: 101 LSQHPRNFNLD-VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD 159
           + +  R FN+D VS P  L+     +DL++KS  S Y EFK++        + K+  VP 
Sbjct: 221 MVKESRRFNIDLVSKP--LYSQGSLIDLLIKSNVSRYAEFKNVTRILAF-WEGKVEQVPC 277

Query: 160 SRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL 219
           SRA +F  K L ++EK  LM+F      +    +  ++  + S       F+++L   KL
Sbjct: 278 SRADVFNSKELSMVEKRMLMKFLTFCLDYEQHSDEYQDFKQCS-------FSDYLKTKKL 330

Query: 220 PHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQG 279
              ++  +L++IAM       SE    T DG+     +   +GRF N     I+P+YG G
Sbjct: 331 TPNLQHFILHSIAM------TSESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHG 382

Query: 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP 339
           E+PQ FCR  AV G +Y LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P
Sbjct: 383 EIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LP 441

Query: 340 GSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVT 398
               S+ Q  Q              ++R + IT  S LK D    + I     L P   T
Sbjct: 442 KETCSNVQYKQ--------------ISRAVLITDQSILKTDSDQQISILVVPPLEP-GTT 486

Query: 399 SIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQ 458
           S+RV++L  +   C    ++++ +  C      ++ L   +  L        AG      
Sbjct: 487 SVRVMELCSSTMTCMKDSYLVHLT--CSSSKTAREDLEPVVKQLFIPEAEAEAGKD---- 540

Query: 459 SEDMEEAKPTLLWSALYI 476
               E  KP LLW ALY 
Sbjct: 541 ----ELRKPRLLW-ALYF 553

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Mus musculus (taxid: 10090)

>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 172/373 (46%), Gaps = 49/373 (13%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 237 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 294

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  +  EE   + F+E+L   KL   ++ 
Sbjct: 295 NSKQLTMVEKRMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQY 347

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 348 FVLHSIAM------TSETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 399

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+    + +  
Sbjct: 400 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGV 459

Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTS--IRV 402
             +               +++R + IT  S LKPD    + I    ++  E+  S  +RV
Sbjct: 460 QYR---------------QISRAVLITDGSVLKPDSDQQVSIL---TVPAEESGSFAVRV 501

Query: 403 LQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDM 462
           ++L  +   C  G ++++ + +       K         +QKL    T   +   Q E  
Sbjct: 502 IELCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE-- 554

Query: 463 EEAKPTLLWSALY 475
              KP +LW ALY
Sbjct: 555 ---KPRILW-ALY 563

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Mus musculus (taxid: 10090)

>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1

 Score =  130 bits (326), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 167/371 (45%), Gaps = 45/371 (12%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-QLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444

Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P     +RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILAVPAEEPGSF-GVRVIE 488

Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539

Query: 465 AKPTLLWSALY 475
            KP LLW ALY
Sbjct: 540 -KPRLLW-ALY 548

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Rattus norvegicus (taxid: 10116)

>sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 173/374 (46%), Gaps = 49/374 (13%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y+EFK++        + K+  VP SRA +F
Sbjct: 227 RRFNIDLVS-KLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAF-REGKVEQVPCSRADVF 284

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    +  +   + S       F+E+L   KL   ++ 
Sbjct: 285 NSKELTMVEKRMLMKFLTFCLEYEQHPDEYQAFRQCS-------FSEYLKTKKLTPNLQH 337

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+N    +   +GRF N     ++P+YGQGE+PQ F
Sbjct: 338 FVLHSIAM------TSESSCTTIDGLNATKNFLQCLGRFGNT--PFLFPLYGQGEIPQGF 389

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V   + D+ SG  K +    GQ I +   +++ S+    + ++ 
Sbjct: 390 CRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNV 449

Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSN--FLVIFPPRSLFPEQVTSIRV 402
             +               +++R + IT  S LK DL     ++I PP         ++RV
Sbjct: 450 QYK---------------QISRAVLITDQSILKTDLDQQTSILIVPPAE---PGACAVRV 491

Query: 403 LQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDM 462
            +L  +   C    ++++ +  C      ++ L    S ++KL    T       +  + 
Sbjct: 492 TELCSSTMTCMKDTYLVHLT--CSSSKTAREDLE---SVVKKLFTPYTE-----TEINEE 541

Query: 463 EEAKPTLLWSALYI 476
           E  KP LLW ALY 
Sbjct: 542 ELTKPRLLW-ALYF 554

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Homo sapiens (taxid: 9606)

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   +I       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQILEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVQKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
359476981	556	PREDICTED: rab proteins geranylgeranyltr	0.871	0.845	0.651	1e-178
224113201	553	predicted protein [Populus trichocarpa]	0.870	0.848	0.640	1e-176
255561411	551	protein with unknown function [Ricinus c	0.864	0.845	0.629	1e-166
147798203	812	hypothetical protein VITISV_019372 [Viti	0.897	0.596	0.562	1e-165
356496561	553	PREDICTED: rab proteins geranylgeranyltr	0.875	0.853	0.595	1e-158
356538383	551	PREDICTED: rab proteins geranylgeranyltr	0.875	0.856	0.589	1e-158
357484143	552	Rab proteins geranylgeranyltransferase c	0.853	0.833	0.581	1e-157
449456881	543	PREDICTED: rab proteins geranylgeranyltr	0.871	0.865	0.579	1e-157
388517443	552	unknown [Medicago truncatula]	0.853	0.833	0.579	1e-157
20453227	563	AT3g06540/F5E6_13 [Arabidopsis thaliana]	0.871	0.834	0.583	1e-154

>gi|359476981|ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransferase component A 2-like [Vitis vinifera] gi|296088658|emb|CBI37649.3| unnamed protein product [Vitis vinifera]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 324/497 (65%), Positives = 386/497 (77%), Gaps = 27/497 (5%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  + +H R FNLD
Sbjct: 64  FLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPV-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS++LY
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILY 242

Query: 230 AIAMADYDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAMADYDQ   EV + VL T+ GI+RLALY+SS+GRF NALGALIYPIYGQGEL QAFC
Sbjct: 243 AIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFC 302

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSH 346
           RRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP  +A S 
Sbjct: 303 RRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQ 362

Query: 347 QQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL 405
              + ES Q  +L D K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +IR +Q+
Sbjct: 363 PDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMAIRAVQI 422

Query: 406 GGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEA 465
           G NL VCP GMFVLY S LC++  QGK+LL AA+ +L  L V+G   NSS+  SE+MEE 
Sbjct: 423 GSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHSENMEEV 482

Query: 466 KPTLLWSALYIQDLSLG 482
           KPTLLWSALY Q+L +G
Sbjct: 483 KPTLLWSALYTQELVMG 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113201|ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|222832862|gb|EEE71339.1| predicted protein [Populus trichocarpa]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 316/493 (64%), Positives = 386/493 (78%), Gaps = 24/493 (4%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           PPYP IEPT FDLI +GTGL E +++AAASASGK+VLHLD NPFYGSH+SSLS+ +LT F
Sbjct: 5   PPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSF 64

Query: 73  L---------NSHSTPSSVCPD---------PLYSDVEISNYASRLLSQHPRNFNLDVSG 114
           L          S ++ ++  PD         P+YSDVEIS +   L+ ++ R FNLD+ G
Sbjct: 65  LISNSTASSPPSSTSTTTDIPDYSIVNLITQPVYSDVEISCFYPELIEENLRKFNLDLCG 124

Query: 115 PRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLME 174
           PRVLFCAD ++DLMLKSGAS+Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LME
Sbjct: 125 PRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDGNGKLWNVPDSRAAIFKDKSLTLME 184

Query: 175 KNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           KNQLMRFFKLVQGHL  ++       ++IS+EDL  PF E+L+KM+LP KI+SI+LYAIA
Sbjct: 185 KNQLMRFFKLVQGHLVATVGAGTSGKMKISDEDLQRPFVEYLSKMRLPPKIRSIILYAIA 244

Query: 233 MADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA 289
           MADYDQ+   V + +LKT+DGI+RLALY SS+GRF NA GALIYPIYGQGELPQAF RR+
Sbjct: 245 MADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALIYPIYGQGELPQAFSRRS 304

Query: 290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL 349
           AVKGC++VLRMPV +LL +++SGSYKGVRLASGQDI S KLVLDPSFT+    AS    L
Sbjct: 305 AVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLL 364

Query: 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNL 409
            ESF   S  D KGKVARGICITR+SLKPD+SN LV++PPRSL+PEQ+TSIR LQ+ GNL
Sbjct: 365 HESFNFLSTRDVKGKVARGICITRNSLKPDMSNLLVVYPPRSLYPEQITSIRALQISGNL 424

Query: 410 AVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTL 469
           AVCPLGMFVLY SALCD+  QGK+LL+AA++AL        + +SST QSE  EE KP++
Sbjct: 425 AVCPLGMFVLYLSALCDDAIQGKRLLNAAMNALLTFPDPVNSESSSTVQSETTEE-KPSV 483

Query: 470 LWSALYIQDLSLG 482
           +WS LY+Q++S G
Sbjct: 484 IWSGLYMQEMSTG 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561411|ref|XP_002521716.1| protein with unknown function [Ricinus communis] gi|223539107|gb|EEF40703.1| protein with unknown function [Ricinus communis]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 311/494 (62%), Positives = 385/494 (77%), Gaps = 28/494 (5%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           P YP I+PT FDLI+IGTGL ES+I+AAASASGKSVLH+D N FYGSHFSSLSI DLT F
Sbjct: 5   PSYPSIDPTTFDLILIGTGLSESIIAAAASASGKSVLHIDQNKFYGSHFSSLSIPDLTSF 64

Query: 73  LNSHS----------------TPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPR 116
           LNS+S                T  ++    LYS+VEIS++++ L+ Q+   F+LD+SGPR
Sbjct: 65  LNSNSVPTPSPPPPQTPHPDFTVVNLTTQSLYSNVEISSFSNELIEQNCSKFSLDISGPR 124

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
           VL+CAD+++DLM+K+GA+ Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LMEKN
Sbjct: 125 VLYCADNSIDLMIKTGANQYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSLSLMEKN 184

Query: 177 QLMRFFKLVQGHLSLDESEEN----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           +LMRFFKLVQ  ++ +E++E     +VRISE+DL+SPF +FL KMKL  KIKSI+LYAI 
Sbjct: 185 RLMRFFKLVQSQIATNENQEQQEEEDVRISEQDLESPFVDFLNKMKLSSKIKSIILYAIV 244

Query: 233 MADYDQE----VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRR 288
           MAD DQE     ++ +LKT+DGI+RLALY SSIGRF NALGA IYPIYGQGELP AFCRR
Sbjct: 245 MADCDQENTGGANKDLLKTKDGIDRLALYQSSIGRFTNALGAFIYPIYGQGELPPAFCRR 304

Query: 289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQ 348
           AAVKGC+YVLRMPV++LL D+N+G+YKG+RLASGQ+I S KLVLDPSFTVP   +S    
Sbjct: 305 AAVKGCIYVLRMPVVALLMDKNNGNYKGIRLASGQEIYSQKLVLDPSFTVP---SSPSDP 361

Query: 349 LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN 408
           L ESF   S+ D K KVAR ICIT+ SLKPD SNFL ++PPRSL+PEQ TSIR LQ+GG+
Sbjct: 362 LHESFCFLSVRDVKQKVARAICITKCSLKPDTSNFLAVYPPRSLYPEQSTSIRALQMGGS 421

Query: 409 LAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPT 468
           LAVCP  MF+LY SALCD+V+QGKKLL+ A++AL     +    + ST Q+E+  E +  
Sbjct: 422 LAVCPTNMFILYLSALCDDVHQGKKLLNTAMNALLSSTDSENPESCSTGQTENT-EVQSM 480

Query: 469 LLWSALYIQDLSLG 482
           LLWSALYIQ+L+ G
Sbjct: 481 LLWSALYIQELTTG 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798203|emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 326/580 (56%), Positives = 392/580 (67%), Gaps = 96/580 (16%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  L +H R FNLD
Sbjct: 64  FLTSQSAVYSSHPNPPSSVTADAAEYVALDLKTRPMYSDVEITSHSSDPL-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKS---- 225
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS    
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSYRSH 242

Query: 226 ----------------------------IVLYAIAMADYDQ---EVSEYVLKTRDGINRL 254
                                       ++LYAIAMADYDQ   EV + VL T+ GI+RL
Sbjct: 243 RPSLSFYANSLLGMYKMQLKTMRDVSLKMILYAIAMADYDQDSIEVCKDVLDTKIGIDRL 302

Query: 255 ALYNSSIG----------------------------------RFQNALGALIYPIYGQGE 280
           ALY+SS+G                                  +F NALGALIYPIYGQGE
Sbjct: 303 ALYHSSVGSQGRRQVCVDVGFDXGGFFGLIFKVHLYKSQNIRKFPNALGALIYPIYGQGE 362

Query: 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG 340
           L QAFCRRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP 
Sbjct: 363 LTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPV 422

Query: 341 SLASSHQQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399
            +A S    + ES Q  +L   K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +
Sbjct: 423 PVAPSQPDCMPESSQVINLVYAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMA 482

Query: 400 IRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS 459
           IR +Q+G NL VCP GMFVLY S LC++  QGK+LL AA+ +L  L V+G   NSS+  S
Sbjct: 483 IRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHS 542

Query: 460 EDMEEAKPTLLWSALYIQDLSLGYCIMVTKLPCFQDVIRK 499
           E+MEE KPTLLWSALY Q+L + +  +    PCF  V+ +
Sbjct: 543 ENMEEVKPTLLWSALYTQELVMLWWEVP---PCFSLVVPR 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496561|ref|XP_003517135.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 297/499 (59%), Positives = 370/499 (74%), Gaps = 27/499 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L 
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLT 69

Query: 75  S-HSTPS----------------SVCPDPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPR 116
           S HS PS                 +   PL +D E + Y  S  LS++ R FN+D+ GPR
Sbjct: 70  SPHSLPSAATAAASSDSDDIVVVDLVHQPLCTDAETATYDESAFLSENSRKFNIDLGGPR 129

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
            LFCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR AIF+DK L L EKN
Sbjct: 130 ALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGAIFRDKKLSLKEKN 189

Query: 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236
           QLMRFFKLVQ HL  D+++E   +I +EDL+ PF  FL KMKLP KIKSI+LYAIAM DY
Sbjct: 190 QLMRFFKLVQQHL--DDTQEE--KIPKEDLEIPFVSFLEKMKLPPKIKSILLYAIAMLDY 245

Query: 237 DQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG 293
           DQ   EV E +LKT+DGI+ LA Y+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKG
Sbjct: 246 DQDNNEVCEELLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKG 305

Query: 294 CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QES 352
           C+YVLRMPV+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSFT+P  L+ S      E 
Sbjct: 306 CIYVLRMPVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSLGDFPSER 365

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D KG VARGICITRSS+KPD+S+  V++PPRSL+PEQVTSI+ LQ+G NLAVC
Sbjct: 366 LQMLSQRDIKGMVARGICITRSSIKPDVSSCSVVYPPRSLYPEQVTSIKALQIGSNLAVC 425

Query: 413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWS 472
           P G F+LY S LC++ ++GKKLL AA++AL  L V+G + +  + QS D E+ KP +LWS
Sbjct: 426 PAGTFILYLSTLCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQS-DSEDIKPIVLWS 484

Query: 473 ALYIQDLSLGYCIMVTKLP 491
           A YIQ L +     ++  P
Sbjct: 485 AFYIQKLIMSKFEFISSTP 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538383|ref|XP_003537683.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 293/497 (58%), Positives = 372/497 (74%), Gaps = 25/497 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L+
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLS 69

Query: 75  S-HSTPSSVCP--------------DPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPRVL 118
           S HS PS+                  PL SD EI+ Y  S  LS++ R F++D+ GP+ L
Sbjct: 70  SPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKAL 129

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
           FCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR +IF+DK L L EKNQL
Sbjct: 130 FCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQL 189

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ 238
           MRFFKLVQ HL  D+++E   +I EEDL+  F  FL KMKLP KIKSI+LYAIAM DYDQ
Sbjct: 190 MRFFKLVQQHL--DDTQEE--KIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQ 245

Query: 239 EVSEY---VLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
           + +E    +LKT+DGI+ LALY+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKGC+
Sbjct: 246 DNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCI 305

Query: 296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QESFQ 354
           YVLRM V+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSF +P  L+SS +    E  Q
Sbjct: 306 YVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQ 365

Query: 355 AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                D KG VARGICITRSS+KPD+SN  V++PPRSL+PEQ+TSI+ LQ+G NLAVCP 
Sbjct: 366 MLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQLTSIKALQIGSNLAVCPA 425

Query: 415 GMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSAL 474
           G F+LYFS +C++ ++GKKLL AA++AL  L V+G + +  + QS D E+ KP +LWSA 
Sbjct: 426 GTFILYFSTMCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQS-DSEDIKPIVLWSAF 484

Query: 475 YIQDLSLGYCIMVTKLP 491
           YIQ L +     ++  P
Sbjct: 485 YIQKLIMCKLEFISSTP 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484143|ref|XP_003612358.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula] gi|355513693|gb|AES95316.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/490 (58%), Positives = 361/490 (73%), Gaps = 30/490 (6%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK IDA+ + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLL 470
           VCP   FVLYFS LC++ N+G KLL A+++AL    V+G   +S   QS   E+ KP +L
Sbjct: 423 VCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESSPNVQSGS-EDKKPVVL 481

Query: 471 WSALYIQDLS 480
           WSA YIQ L+
Sbjct: 482 WSAFYIQKLT 491

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456881|ref|XP_004146177.1| PREDICTED: rab proteins geranylgeranyltransferase component A 1-like [Cucumis sativus]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/499 (57%), Positives = 369/499 (73%), Gaps = 29/499 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           +P I+P+ FDLIV+GTGLP+S+++AAASASGK+VLHLDPNP+YG HF++L + DLT FLN
Sbjct: 7   HPLIDPSTFDLIVVGTGLPQSILAAAASASGKTVLHLDPNPYYGGHFATLPLHDLTSFLN 66

Query: 75  SHSTPSSVCPDP-------------------LYSDVEISNYASRLLSQHPRNFNLDVSGP 115
           S S P  + P P                   LYSDVEIS+YA  +L +H R FN+D++GP
Sbjct: 67  SASAP--LLPSPPLASYDNQDYVSVDLQTRSLYSDVEISSYAPEVLQEHARKFNIDLAGP 124

Query: 116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
           RVLFCAD  +D +LK G + YLEFKSIDA+++ D + KL +VP SRAAIFKDKSL L EK
Sbjct: 125 RVLFCADKCIDAVLKVGVNQYLEFKSIDASYLWDQNGKLVNVPGSRAAIFKDKSLSLTEK 184

Query: 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
           NQLMRFFKLVQ HL   E  E++ +IS+EDLD+PF++FL K++LP K+KSI+LYAI+MAD
Sbjct: 185 NQLMRFFKLVQKHLDPAEDGESS-KISQEDLDTPFSDFLNKLRLPQKMKSIILYAISMAD 243

Query: 236 YDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK 292
            DQ   ++ +  L T++GI RLALY++SIGRFQNA GAL+YPIYGQGEL QAFCRRAAVK
Sbjct: 244 SDQNDNDIGQNRLLTKEGIARLALYHTSIGRFQNAQGALLYPIYGQGELSQAFCRRAAVK 303

Query: 293 GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQES 352
           GCLYVLRMPV++LL D+++  YKGVRLASGQDI S +LVLDP F VP     S     ES
Sbjct: 304 GCLYVLRMPVVALLKDKSNEQYKGVRLASGQDIFSQQLVLDPCFIVPQLFKLSL----ES 359

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D   KVARGICIT+ S+  D+ N L+++PP++LFPEQV+S+RVLQ+GGNLAVC
Sbjct: 360 LQDVSSRDVNRKVARGICITKHSIVSDVKNCLLVYPPKTLFPEQVSSVRVLQIGGNLAVC 419

Query: 413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWS 472
           P  MFV+Y S LCD  NQGK+++ AA++++  L V+    +SS  Q  + E     LLWS
Sbjct: 420 PEDMFVIYISTLCDSANQGKEMVRAAMNSITLLFVSDCPDSSSVDQDTNAEGKDLDLLWS 479

Query: 473 ALYIQDLSLGYCIMVTKLP 491
           ALY+Q+ S+G    V+  P
Sbjct: 480 ALYVQESSVGQFGTVSFTP 498

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517443|gb|AFK46783.1| unknown [Medicago truncatula]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 284/490 (57%), Positives = 360/490 (73%), Gaps = 30/490 (6%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK ID + + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDVSLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLL 470
           VCP   FVLYFS LC++ N+G KLL A+++AL    V+G   +S   QS   E+ KP +L
Sbjct: 423 VCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESSPNVQSGS-EDKKPVVL 481

Query: 471 WSALYIQDLS 480
           WSA YIQ L+
Sbjct: 482 WSAFYIQKLT 491

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20453227|gb|AAM19852.1| AT3g06540/F5E6_13 [Arabidopsis thaliana] gi|23463085|gb|AAN33212.1| At3g06540/F5E6_13 [Arabidopsis thaliana]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/499 (58%), Positives = 374/499 (74%), Gaps = 29/499 (5%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
           +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DLT 
Sbjct: 4   IPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTS 63

Query: 72  FLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFNLD 111
           FL+S+S                        +    LYS VEIS++ S +L +H R FN+D
Sbjct: 64  FLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFNVD 123

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           ++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKSL 
Sbjct: 124 LAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKSLT 183

Query: 172 LMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+LY
Sbjct: 184 LLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSIILY 243

Query: 230 AIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQAFC
Sbjct: 244 AIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQAFC 303

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLASS 345
           RRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+S 
Sbjct: 304 RRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLSSL 363

Query: 346 HQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVL 403
             Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+SLFPEQ+T+IRVL
Sbjct: 364 TDQQNETLNVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPKSLFPEQLTAIRVL 423

Query: 404 QLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDME 463
           QLG  LAVCP  M VLY S LCD  +QG K L +A+S L  L V     + S  ++ D  
Sbjct: 424 QLGSGLAVCPADMHVLYLSTLCDNDDQGIKALLSAMSNLISLPVPENRQSDSVVEN-DTS 482

Query: 464 EAKPTLLWSALYIQDLSLG 482
           E KP LLW ALY+Q+L  G
Sbjct: 483 ETKPILLWRALYVQELVKG 501

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
TAIR|locus:2084289	563	REP "AT3G06540" [Arabidopsis t	0.732	0.701	0.603	9.8e-146
FB|FBgn0026378	511	Rep "Rab escort protein" [Dros	0.551	0.581	0.337	1.6e-38
UNIPROTKB|P24386	653	CHM "Rab proteins geranylgeran	0.510	0.421	0.298	1.7e-36
MGI|MGI:101913	621	Chml "choroideremia-like" [Mus	0.502	0.436	0.301	9.1e-36
UNIPROTKB|E2RKG1	652	CHM "Uncharacterized protein"	0.508	0.420	0.307	1.6e-35
MGI|MGI:892979	665	Chm "choroidermia" [Mus muscul	0.512	0.415	0.295	3.5e-35
UNIPROTKB|K7GR66	653	CHM "Uncharacterized protein"	0.512	0.422	0.280	2.8e-34
DICTYBASE|DDB_G0280143	661	DDB_G0280143 "Rab escort prote	0.591	0.482	0.275	3.7e-34
UNIPROTKB|F1NEX6	656	CHM "Uncharacterized protein"	0.378	0.310	0.328	7.9e-34
RGD|2340	650	Chm "choroideremia (Rab escort	0.513	0.426	0.290	3.2e-33

TAIR|locus:2084289 REP "AT3G06540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1221 (434.9 bits), Expect = 9.8e-146, Sum P(2) = 9.8e-146
 Identities = 244/404 (60%), Positives = 312/404 (77%)

Query:    87 LYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATF 146
             LYS VEIS++ S +L +H R FN+D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F
Sbjct:    99 LYSSVEISSFESEILEEHSRRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASF 158

Query:   147 MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEE 204
             + D+  +L +VPDSRAAIFKDKSL L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEE
Sbjct:   159 VGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEE 218

Query:   205 DLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSI 261
             D++SPF +FL+KM+LP KIKSI+LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+
Sbjct:   219 DMESPFVDFLSKMRLPPKIKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSM 278

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
             GRF NALGALIYPIYGQGELPQAFCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLAS
Sbjct:   279 GRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLAS 338

Query:   322 GQDILSHKLVLDPSFTVP-GSLASSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKP 378
             GQ+I S KL+LDP  TV   SL+S   Q  E+          NK K+ARG+C+ R S+K 
Sbjct:   339 GQEIFSQKLILDPCVTVGLESLSSLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKA 398

Query:   379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA 438
             ++SN LV++PP+SLFPEQ+T+IRVLQLG  LAVCP  M VLY S LCD  +QG K L +A
Sbjct:   399 NVSNALVVYPPKSLFPEQLTAIRVLQLGSGLAVCPADMHVLYLSTLCDNDDQGIKALLSA 458

Query:   439 LSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLG 482
             +S L  L V     + S  ++ D  E KP LLW ALY+Q+L  G
Sbjct:   459 MSNLISLPVPENRQSDSVVEN-DTSETKPILLWRALYVQELVKG 501

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0026378 Rep "Rab escort protein" [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 109/323 (33%), Positives = 167/323 (51%)

Query:    23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
             FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P S 
Sbjct:     9 FDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSA 68

Query:    83 CPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGAS 134
               +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS   
Sbjct:    69 LRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKSNIC 127

Query:   135 HYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
              Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F      +   D+ 
Sbjct:   128 RYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDY-GEDKC 185

Query:   195 EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254
              E+++    E     F E+L   ++  KI S V+ AIAM        E       G+ R 
Sbjct:   186 NEDSL----EFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GMQRT 234

Query:   255 ALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY 314
               +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS  +
Sbjct:   235 QRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEF 292

Query:   315 KGVRLASGQDILSHKLVLDPSFT 337
               +  ++G+ + +  +V  P +T
Sbjct:   293 --LLSSAGKTLRAKNVVSAPGYT 313

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS;NAS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=ISS

GO:0005818 "aster" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=NAS

UNIPROTKB|P24386 CHM "Rab proteins geranylgeranyltransferase component A 1" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 92/308 (29%), Positives = 149/308 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F E+L   KL   ++ IV+++IAM  
Sbjct:   293 RMLMKFLTFCMEY----EKYPDEYKGYEE---ITFYEYLKTQKLTPNLQYIVMHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S  Q  Q     
Sbjct:   398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSRVQYRQ----- 451

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT RS LK D    + I    +  P    ++RV++L  +   C  
Sbjct:   452 ---------ISRAVLITDRSVLKTDSDQQISILTVPAEEPGTF-AVRVIELCSSTMTCMK 501

Query:   415 GMFVLYFS 422
             G ++++ +
Sbjct:   502 GTYLVHLT 509

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=TAS

MGI|MGI:101913 Chml "choroideremia-like" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 9.1e-36, Sum P(2) = 9.1e-36
 Identities = 93/308 (30%), Positives = 154/308 (50%)

Query:   118 LFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177
             L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK  
Sbjct:   237 LYSQGSLIDLLIKSNVSRYAEFKNV-TRILAFWEGKVEQVPCSRADVFNSKELSMVEKRM 295

Query:   178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237
             LM+F         LD  + ++    ++     F+++L   KL   ++  +L++IAM    
Sbjct:   296 LMKFLTFC-----LDYEQHSDEY--QDFKQCSFSDYLKTKKLTPNLQHFILHSIAMT--- 345

Query:   238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYV 297
                SE    T DG+     +   +GRF N     I+P+YG GE+PQ FCR  AV G +Y 
Sbjct:   346 ---SESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHGEIPQCFCRMCAVFGGVYC 400

Query:   298 LRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFS 357
             LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P    S+ Q  Q       
Sbjct:   401 LRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LPKETCSNVQYKQ------- 452

Query:   358 LSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                    ++R + IT +S LK D      +++ PP  L P   TS+RV++L  +   C  
Sbjct:   453 -------ISRAVLITDQSILKTDSDQQISILVVPP--LEPG-TTSVRVMELCSSTMTCMK 502

Query:   415 GMFVLYFS 422
               ++++ +
Sbjct:   503 DSYLVHLT 510

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RKG1 CHM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 299 (110.3 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 95/309 (30%), Positives = 148/309 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   233 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 291

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   292 RMLMKFLTFCMEY----EKHPDEYKAYEE---ITFSEYLKTQKLTPNLQYFVLHSIAMT- 343

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   344 -----SETASNTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 396

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILS-HKLVLDPSFTVPGSLASSHQQLQESFQ 354
             Y LR  V  L+ D+ S   K +    GQ I+S H LV D  F+       SH Q ++   
Sbjct:   397 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFS---ENTCSHVQYRQ--- 450

Query:   355 AFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCP 413
                       ++R + IT RS LK D    + I       P    ++RV++L  +   C 
Sbjct:   451 ----------ISRSVLITDRSVLKTDSDQQISILTVPGEEPGTF-AVRVIELCSSTMTCM 499

Query:   414 LGMFVLYFS 422
              G ++++ +
Sbjct:   500 KGTYLVHLT 508

GO:0001568 "blood vessel development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

MGI|MGI:892979 Chm "choroidermia" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 3.5e-35, Sum P(2) = 3.5e-35
 Identities = 92/311 (29%), Positives = 150/311 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   246 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 304

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE   + F+E+L   KL   ++  VL++IAM  
Sbjct:   305 RMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQYFVLHSIAMT- 356

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   357 -----SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 409

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+ +  +  S  Q  Q     
Sbjct:   410 YCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSY-LSENTCSGVQYRQ----- 463

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVT-SIRVLQLGGNLAVCP 413
                      ++R + IT  S LKPD    + I    +   E  + ++RV++L  +   C 
Sbjct:   464 ---------ISRAVLITDGSVLKPDSDQQVSILTVPA--EESGSFAVRVIELCSSTMTCM 512

Query:   414 LGMFVLYFSAL 424
              G ++++ + +
Sbjct:   513 KGTYLVHLTCM 523

GO:0001568 "blood vessel development" evidence=IMP

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

UNIPROTKB|K7GR66 CHM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
 Identities = 86/307 (28%), Positives = 147/307 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   293 RMLMKFLTFCMDY----EEYPDEYKAYEE---ISFSEYLKTQKLTPNLQYFVLHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATQNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ SG  K +    GQ I++   +++ S+    +   S  Q ++  +A
Sbjct:   398 YCLRHSVQCLVVDKESGKCKAIIDHFGQRIIAKHFIVEDSYFSENTC--SRVQYRQISRA 455

Query:   356 FSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
               ++D          + +S+    +S   V       F     ++RV++L  +   C  G
Sbjct:   456 VLVTDKS--------VLKSNSDQQISILTVPADEPGAF-----AVRVIELCSSTMTCMKG 502

Query:   416 MFVLYFS 422
              ++++ +
Sbjct:   503 TYLVHLT 509

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0280143 DDB_G0280143 "Rab escort protein (REP)" [Dictyostelium discoideum (taxid:44689)]

 Score = 321 (118.1 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
 Identities = 95/345 (27%), Positives = 169/345 (48%)

Query:    91 VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
             +++   + + L +  R F++D+S P +L+     V L++ S AS YLEFKS+D  ++   
Sbjct:   162 IDVPLVSDKSLEELGRLFSIDIS-PTLLYGRGALVKLLISSSASRYLEFKSLDQNYLF-T 219

Query:   151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV-----QGHLSLDESE-ENNVRISEE 204
             + K+  +P ++ +IFKD +  L EK  +M+F + +     +G   LD++E E + ++S  
Sbjct:   220 NGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGS-DLDDAEKEAHFKLSII 278

Query:   205 DLDSPFAEFLT---KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSI 261
             +L   F  F+      K    ++S +LY +++   D E     L+T  GI  + LY SS+
Sbjct:   279 ELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLE--SIPLET--GIESVFLYTSSL 334

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
               +   +   + P YG G++PQAFCR  AV G  YVL   V S+  +Q +G  K +  + 
Sbjct:   335 LVY--GVSPFLIPYYGVGDIPQAFCRLCAVFGGSYVLGRTVDSIQFNQETGKVKSIICSE 392

Query:   322 GQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS 381
             GQ I +   +  P +    +++SS   L            +   +R I I  S +    +
Sbjct:   393 GQTIQTTHFITSPKYL--NTISSSQNNL-----ILPQKTIRKTYSRFIGIIESKIIGTQN 445

Query:   382 NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
             +  +  PP+S+   +   I +LQL            +++F+ L D
Sbjct:   446 DSFITIPPKSIGNNK-NVINILQLSSICVPYNKNKALIHFTTLAD 489

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0018344 "protein geranylgeranylation" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

UNIPROTKB|F1NEX6 CHM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 7.9e-34, Sum P(3) = 7.9e-34
 Identities = 73/222 (32%), Positives = 119/222 (53%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLCSVPDSRAAIFKDKSLGLME 174
             ++L+     ++L++KS  S Y EFK+  AT +L   + K+  VP SRA +F  + L ++E
Sbjct:   230 KLLYSRGLLIELLIKSNVSRYAEFKN--ATRILAFREGKVEQVPCSRADVFNSRQLAMVE 287

Query:   175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMA 234
             K  LM+F       L  ++  +      ++  +S FA+FL   KL   ++  +L++IAM 
Sbjct:   288 KRMLMKFLTFC---LEYEQHPDEY----QDYKNSTFAQFLKTRKLTPSLQHFILHSIAM- 339

Query:   235 DYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGC 294
                  VSE    T +G+     +   +GR+ N     ++P+YGQGE+PQ FCR  AV G 
Sbjct:   340 -----VSEKDCNTLEGLQATRKFLQCLGRYGNT--PFLFPLYGQGEIPQCFCRMCAVFGG 392

Query:   295 LYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
             +Y LR  V  L+ D+ SG  K V    GQ I ++  +++ S+
Sbjct:   393 IYCLRHSVQCLVVDKESGRCKAVVDHFGQRISANYFIVEDSY 434

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|2340 Chm "choroideremia (Rab escort protein 1)" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
 Identities = 90/310 (29%), Positives = 146/310 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   231 QLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 289

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  R  E    + F+E+L   KL   ++  VL++IAM  
Sbjct:   290 RMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQYFVLHSIAMT- 341

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   342 -----SETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 394

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    +   S  Q ++    
Sbjct:   395 YCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC--SRVQYRQ---- 448

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT  S LK D    + I    +  P     +RV++L  +   C  
Sbjct:   449 ---------ISRAVLITDGSVLKTDADQQVSILAVPAEEPGSF-GVRVIELCSSTMTCMK 498

Query:   415 GMFVLYFSAL 424
             G ++++ + +
Sbjct:   499 GTYLVHLTCM 508

GO:0001568 "blood vessel development" evidence=IEA;ISO

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	539
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	2e-55
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	2e-52
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	2e-50

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  192 bits (489), Expect = 2e-55
 Identities = 120/473 (25%), Positives = 195/473 (41%), Gaps = 75/473 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL-THFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S  GK VLH+D N +YG   +SLS+  L   F      P S
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEEKPPS 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V L++ +  + YLEFK+
Sbjct: 65  K-------------LGRS------RDWNVDLI-PKFLMANGELVKLLIHTDVTRYLEFKA 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
           ++ +++     K+  VP +         +G+ EK +  +F   VQ     DE +      
Sbjct: 105 VEGSYVYK-GGKIHKVPANEMEALSSPLMGIFEKRRFRKFLTYVQ---DYDEDDPK---- 156

Query: 202 SEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258
           + + LD       E   K  L       + +A+A+   D  +++        + R+ LY+
Sbjct: 157 THDGLDPRKRTMLEVYKKFGLDENTIDFIGHALALYRDDDYLNQ---PALPTVERIKLYS 213

Query: 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318
            S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ D+N G   GV+
Sbjct: 214 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEIVYDEN-GKVVGVK 270

Query: 319 LASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377
             SG ++   K V+ DPS+  P  +                    G+V R ICI    + 
Sbjct: 271 --SGGEVARAKQVICDPSYF-PDKVRK-----------------VGQVIRAICILSHPIP 310

Query: 378 --PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD------EVN 429
              D  +  +I P   +  +  + I +        VCP G ++   S   +      E+ 
Sbjct: 311 NTNDAGSVQIIIPQNQVGRK--SDIYISCCSYAHNVCPKGKYIAIVSTTVETENPESELA 368

Query: 430 QGKKLLHA------ALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYI 476
            G  LL         +S L +    G+      +QS D      T     L I
Sbjct: 369 PGLDLLGPIDEKFVKISDLYEPTDDGSEDQIFISQSYDATTHFETTCNDVLDI 421

Length = 439

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  183 bits (467), Expect = 2e-52
 Identities = 116/418 (27%), Positives = 180/418 (43%), Gaps = 62/418 (14%)

Query: 17  PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
             E T +D+I++GTGL ES++SAA S  GK+VLH+D N +YGS  +SL++  L  + +  
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFD-- 58

Query: 77  STPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHY 136
                  P     D               R+ N+D+  P+ LF     + +++++G + Y
Sbjct: 59  --ECEKRPSKGGGD---------------RDLNIDLI-PKFLFANSELLKILIETGVTEY 100

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEE 196
           LEFK I  +F+     K+  VP + A IF    L L EK ++MRF K V  +       E
Sbjct: 101 LEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNY------AE 153

Query: 197 NNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLA 255
               + E        EFL  K  L    +  + + IA++  D ++       R+ + R+ 
Sbjct: 154 QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLDI-----PAREALERIL 207

Query: 256 LYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP-VISLLTDQNSGSY 314
            Y  S G +  +    +YP YG GEL Q F R +AV G  Y+L         T       
Sbjct: 208 RYMRSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKDVETVD 265

Query: 315 KGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRS 374
           KG          + K++  P++       S                   ++ R ICI   
Sbjct: 266 KG-----SLTQKAGKIISSPTY---FREDSKSVGQFY------------RIIRAICILLV 305

Query: 375 SLKP---DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVN 429
              P    L +  +IFPP SL  ++   I+V  LG    VCP G ++ Y S + +   
Sbjct: 306 HPVPFTTGLDSLQIIFPPFSL--KRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPT 361

Length = 434

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  178 bits (454), Expect = 2e-50
 Identities = 118/429 (27%), Positives = 196/429 (45%), Gaps = 59/429 (13%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV GTGL E ++S   S +GK VLH+D NP+YG   +SL++  L        TP   
Sbjct: 5   YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP--- 61

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  +               R++N+D+  P+ +  +   V ++L +  + YLEFK I
Sbjct: 62  -PESLGRN---------------RDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           D +++   + K+  VP +         +G  EKN+   F + V  +      +EN+    
Sbjct: 105 DGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNY------DENDPETH 158

Query: 203 EE-DLDS-PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           +  +L +   A+   K  L       V +A+A+   D  +++  ++T   + R+ LY  S
Sbjct: 159 KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET---VMRIKLYMDS 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    IYP+YG G LPQAF R  A+ G  Y+L  PV  ++ D+N G   GV+  
Sbjct: 216 LSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSE 272

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G+      ++ DPS+  P  +                    GKV R ICI    + P+ 
Sbjct: 273 GGEVAKCKLVICDPSY-FPDKVKK-----------------VGKVIRCICILNHPI-PNT 313

Query: 381 SN---FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
           +N     +I P + L   +   I ++ +  N  VCP G ++   S    E N  +K +  
Sbjct: 314 NNANSCQIIIPQKQL--GRKNDIYIMLVSSNHGVCPKGKYIAIISTTV-ETNNPEKEIEP 370

Query: 438 ALSALQKLL 446
           AL  L  + 
Sbjct: 371 ALKLLGPIE 379

Length = 443

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	539
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.95
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.94
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.94
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.94
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.92
PRK07233	434	hypothetical protein; Provisional	99.91
PLN02576	496	protoporphyrinogen oxidase	99.91
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.9
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.89
PRK07208	479	hypothetical protein; Provisional	99.89
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.88
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.88
PLN02612	567	phytoene desaturase	99.87
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.84
PLN02487	569	zeta-carotene desaturase	99.83
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.83
PLN02268	435	probable polyamine oxidase	99.79
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.79
PLN02676	487	polyamine oxidase	99.77
PLN02529	738	lysine-specific histone demethylase 1	99.77
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.74
PLN02568	539	polyamine oxidase	99.74
PLN03000	881	amine oxidase	99.72
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.71
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.65
PLN02976	1713	amine oxidase	99.59
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.58
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.56
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.55
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.45
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.29
COG2081	408	Predicted flavoproteins [General function predicti	99.23
COG3349	485	Uncharacterized conserved protein [Function unknow	99.22
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.17
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.11
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.09
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.02
COG0579	429	Predicted dehydrogenase [General function predicti	98.95
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.92
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.91
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.88
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.81
PRK08274	466	tricarballylate dehydrogenase; Validated	98.78
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.77
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.75
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.74
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.72
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.71
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.69
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.65
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.64
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.6
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.59
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.55
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.54
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.51
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.48
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.47
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.47
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.45
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.44
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.4
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.37
PRK10157	428	putative oxidoreductase FixC; Provisional	98.37
PRK10015	429	oxidoreductase; Provisional	98.34
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.29
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.28
PRK07121	492	hypothetical protein; Validated	98.28
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.28
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.25
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.25
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.25
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.24
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.24
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.23
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.21
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.21
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.2
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.2
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.19
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.17
PRK06116	450	glutathione reductase; Validated	98.16
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.16
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.16
PRK08013	400	oxidoreductase; Provisional	98.14
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.14
PTZ00058	561	glutathione reductase; Provisional	98.13
PRK06370	463	mercuric reductase; Validated	98.13
PRK09126	392	hypothetical protein; Provisional	98.13
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.13
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.1
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.1
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.1
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.1
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.1
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.1
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.09
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.08
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.08
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.07
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.07
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.07
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.07
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.05
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.04
PRK06184	502	hypothetical protein; Provisional	98.04
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.04
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.03
PRK07045	388	putative monooxygenase; Reviewed	98.03
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.03
PRK14694	468	putative mercuric reductase; Provisional	98.02
PLN02661	357	Putative thiazole synthesis	98.02
PRK07236	386	hypothetical protein; Provisional	98.02
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.02
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.02
PLN02463	447	lycopene beta cyclase	98.02
PRK13748	561	putative mercuric reductase; Provisional	98.02
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.02
PRK08163	396	salicylate hydroxylase; Provisional	98.01
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.01
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.01
COG3573	552	Predicted oxidoreductase [General function predict	98.01
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.01
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.0
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.98
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.98
PRK12831	464	putative oxidoreductase; Provisional	97.97
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.97
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.97
PLN02985	514	squalene monooxygenase	97.97
PRK06834	488	hypothetical protein; Provisional	97.97
PRK06185	407	hypothetical protein; Provisional	97.96
TIGR02053	463	MerA mercuric reductase. This model represents the	97.96
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.96
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.95
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.95
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.95
PRK14727	479	putative mercuric reductase; Provisional	97.94
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.94
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.93
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.93
PLN02697	529	lycopene epsilon cyclase	97.93
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.91
PRK06847	375	hypothetical protein; Provisional	97.91
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.9
PRK07190	487	hypothetical protein; Provisional	97.9
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.9
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.89
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.89
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.88
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.88
PTZ00052	499	thioredoxin reductase; Provisional	97.88
PTZ00367	567	squalene epoxidase; Provisional	97.88
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.88
PRK06753	373	hypothetical protein; Provisional	97.88
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.87
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
PRK06126	545	hypothetical protein; Provisional	97.86
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.86
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.85
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.85
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.85
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.85
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.85
PLN02507	499	glutathione reductase	97.84
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.84
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.84
PRK08244	493	hypothetical protein; Provisional	97.83
PRK07538	413	hypothetical protein; Provisional	97.83
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.83
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.83
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.82
PRK07804	541	L-aspartate oxidase; Provisional	97.82
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.82
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.82
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.82
PRK11445	351	putative oxidoreductase; Provisional	97.82
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.81
PRK12839	572	hypothetical protein; Provisional	97.81
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.79
PLN02852	491	ferredoxin-NADP+ reductase	97.79
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.79
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.79
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.77
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.77
PRK05257	494	malate:quinone oxidoreductase; Validated	97.77
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.77
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.77
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.77
PRK07395	553	L-aspartate oxidase; Provisional	97.77
PRK07588	391	hypothetical protein; Provisional	97.77
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.76
PRK06175	433	L-aspartate oxidase; Provisional	97.76
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.76
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.74
PLN02546	558	glutathione reductase	97.74
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.74
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.73
PRK02106	560	choline dehydrogenase; Validated	97.73
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.71
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.71
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.7
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.7
PRK05868	372	hypothetical protein; Validated	97.69
PLN02815	594	L-aspartate oxidase	97.69
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.68
PRK10262	321	thioredoxin reductase; Provisional	97.68
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.68
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.67
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.67
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.66
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.66
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.66
PRK08294	634	phenol 2-monooxygenase; Provisional	97.66
PRK06475	400	salicylate hydroxylase; Provisional	97.66
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.64
PRK06996	398	hypothetical protein; Provisional	97.64
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.64
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.63
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.63
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.61
PRK08071	510	L-aspartate oxidase; Provisional	97.61
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.61
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.61
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.6
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.6
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.55
PRK08275	554	putative oxidoreductase; Provisional	97.54
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.54
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.53
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.52
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.51
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.51
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.51
KOG2853	509	consensus Possible oxidoreductase [General functio	97.5
PRK08401	466	L-aspartate oxidase; Provisional	97.5
PRK09077	536	L-aspartate oxidase; Provisional	97.48
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.47
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.47
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.46
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.44
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.42
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.4
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.39
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.37
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.35
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.34
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.33
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.32
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.29
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.28
PRK07512	513	L-aspartate oxidase; Provisional	97.26
PRK07846	451	mycothione reductase; Reviewed	97.25
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.25
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.24
PRK13984	604	putative oxidoreductase; Provisional	97.21
PLN02785	587	Protein HOTHEAD	97.2
PTZ00188	506	adrenodoxin reductase; Provisional	97.2
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.2
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.18
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.17
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.17
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.16
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.08
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.73
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.69
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.67
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.61
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.52
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.52
PRK09897	534	hypothetical protein; Provisional	96.49
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.38
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.35
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.32
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.32
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.21
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.99
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.98
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	95.95
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.76
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.71
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.49
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.35
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.06
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.02
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.02
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	94.8
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.79
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.73
KOG2852	380	consensus Possible oxidoreductase [General functio	94.68
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.62
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.56
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.46
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.33
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.08
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	94.05
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	93.96
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.87
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	93.86
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.85
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	93.8
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.72
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.69
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.55
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.46
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.45
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	93.4
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.19
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.87
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	92.82
TIGR02053	463	MerA mercuric reductase. This model represents the	92.81
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.79
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.79
PRK06370	463	mercuric reductase; Validated	92.78
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.72
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	92.63
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.59
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.51
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.47
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	92.44
PRK13512	438	coenzyme A disulfide reductase; Provisional	92.44
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	92.35
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	92.33
PRK07846	451	mycothione reductase; Reviewed	92.25
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	92.2
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	92.18
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	92.11
PRK04148	134	hypothetical protein; Provisional	92.1
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.07
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	92.07
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.05
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.04
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.97
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	91.96
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.48
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	91.44
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.4
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.39
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	91.3
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	91.25
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.17
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.16
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	91.11
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.1
PRK09564	444	coenzyme A disulfide reductase; Reviewed	90.89
PRK07845	466	flavoprotein disulfide reductase; Reviewed	90.65
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	90.63
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	90.62
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.57
PRK05257	494	malate:quinone oxidoreductase; Validated	90.52
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	90.51
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	90.5
PRK10262	321	thioredoxin reductase; Provisional	90.46
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	90.43
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	90.42
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.24
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.24
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	90.24
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.23
PTZ00153	659	lipoamide dehydrogenase; Provisional	90.23
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	90.14
PTZ00058	561	glutathione reductase; Provisional	90.13
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	90.12
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	89.91
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	89.87
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.86
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	89.79
PLN02507	499	glutathione reductase	89.67
PRK12770	352	putative glutamate synthase subunit beta; Provisio	89.61
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	89.51
PRK06116	450	glutathione reductase; Validated	89.5
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	89.45
PRK07417	279	arogenate dehydrogenase; Reviewed	89.4
PRK12831	464	putative oxidoreductase; Provisional	89.3
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	89.24
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.01
PRK13748	561	putative mercuric reductase; Provisional	88.98
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	88.87
PLN02546	558	glutathione reductase	88.7
PRK06719	157	precorrin-2 dehydrogenase; Validated	88.66
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	88.6
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	88.59
PLN02353	473	probable UDP-glucose 6-dehydrogenase	88.55
PRK14694	468	putative mercuric reductase; Provisional	88.52
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	88.48
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	88.44
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	88.44
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	88.41
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	88.22
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	87.95
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.94
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.89
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.88
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	87.82
PRK14727	479	putative mercuric reductase; Provisional	87.7
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	87.62
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	87.6
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	87.48
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.46
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	87.29
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	87.23
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	87.07
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	87.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	87.04
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	86.96
PRK15116	268	sulfur acceptor protein CsdL; Provisional	86.87
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	86.81
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	86.79
PTZ00052	499	thioredoxin reductase; Provisional	86.75
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	86.71
PRK07121	492	hypothetical protein; Validated	86.67
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	86.61
PRK13339	497	malate:quinone oxidoreductase; Reviewed	86.54
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.53
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	86.38
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	86.29
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	86.13
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	86.1
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	85.74
PRK11730	715	fadB multifunctional fatty acid oxidation complex	85.63
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	85.55
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.49
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	85.44
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	85.37
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.36
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	85.36
PRK06223	307	malate dehydrogenase; Reviewed	85.08
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	85.07
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	85.05
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.97
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	84.92
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.9
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.79
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	84.71
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	84.64
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.46
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	84.44
PRK10157	428	putative oxidoreductase FixC; Provisional	84.38
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	84.3
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	84.24
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	84.05
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	84.04
PRK06175	433	L-aspartate oxidase; Provisional	83.87
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	83.67
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	83.66
PLN02256	304	arogenate dehydrogenase	83.63
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	83.46
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.39
PLN02695	370	GDP-D-mannose-3',5'-epimerase	83.29
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	83.23
PRK06847	375	hypothetical protein; Provisional	83.11
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	82.98
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	82.96
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	82.96
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	82.84
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	82.83
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	82.79
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	82.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.71
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	82.39
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	82.38
PRK07831	262	short chain dehydrogenase; Provisional	82.35
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	82.32
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	82.31
PTZ00082	321	L-lactate dehydrogenase; Provisional	82.24
PLN02712	667	arogenate dehydrogenase	81.9
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	81.88
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	81.72
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	81.7
PLN02464	627	glycerol-3-phosphate dehydrogenase	81.6
PRK09496	453	trkA potassium transporter peripheral membrane com	81.5
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	81.47
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	81.39
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	81.34
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	81.34
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	81.2
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.18
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	81.16
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	81.16
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	80.97
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	80.93
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	80.9
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	80.85
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	80.71
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	80.53
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	80.51
PRK07045	388	putative monooxygenase; Reviewed	80.45
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	80.37
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	80.35
PRK12779	944	putative bifunctional glutamate synthase subunit b	80.32
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	80.23

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=2.7e-68  Score=556.04  Aligned_cols=373  Identities=35%  Similarity=0.647  Sum_probs=289.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      ++++|||||+|||+.++++|++||++|++|||+|+|++|||.++|++++++.+|+......                 ..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~   63 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP   63 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence            4688999999999999999999999999999999999999999999999998888544210                 00


Q ss_pred             ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                      +.+ ...|+|+|||. |++++++|+++++|+++++.+|+||+.+++.|++. +|++++||++++|+|+++.+++.+||+|
T Consensus        64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l  140 (438)
T PF00996_consen   64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL  140 (438)
T ss_dssp             HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred             ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence            122 36799999998 99999999999999999999999999999999986 8999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l  258 (539)
                      |||++++.++.+..+...   + ..+....||.+++++|++++.+++++.|+++|...+..   -..++.+++.++++|+
T Consensus       141 mkFl~~v~~~~~~~~~~~---~-~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl  213 (438)
T PF00996_consen  141 MKFLKFVANYEEDDPSTH---K-GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL  213 (438)
T ss_dssp             HHHHHHHHHGCTTBGGGS---T-TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcchh---h-ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence            999999988754322110   0 11344689999999999999999999999998643221   1135789999999999


Q ss_pred             HhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009226          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (539)
Q Consensus       259 ~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~  338 (539)
                      .|+|+||++  ||+||+||.|||+|+|||++|+.||+|+||++|++|..++ +|++.+|. ++|++++|++||++|+|. 
T Consensus       214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~-  288 (438)
T PF00996_consen  214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL-  288 (438)
T ss_dssp             HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred             HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence            999999986  5999999999999999999999999999999999999874 68888997 599999999999998876 


Q ss_pred             CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC--CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCc
Q 009226          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (539)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~--~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~  416 (539)
                      |+-.                 ...++++|+|+|+++|+.+..  ....+++|+.+.+  ..++||++++|+++++||+|+
T Consensus       289 p~~v-----------------~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~--~~~dIyv~~~ss~~~~CP~G~  349 (438)
T PF00996_consen  289 PEKV-----------------KKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVG--RKSDIYVLQLSSSTGVCPKGQ  349 (438)
T ss_dssp             GCGE-----------------EEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCT--SSS-EEEEEEEGGGTSS-TT-
T ss_pred             cccc-----------------cccceEEEEEEEEcCCCCCCCCCceEEEecCCcccC--CCCCeEEEEECCCccccCCCc
Confidence            2210                 124689999999999998643  3456779987654  356799999999999999999


Q ss_pred             EEEEEEEeeccccchHHHHHHHHHHHH
Q 009226          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (539)
Q Consensus       417 ~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (539)
                      ||+|+||...+ ++++++|+++++.|-
T Consensus       350 yi~~~St~~~t-~~p~~eL~~~l~lL~  375 (438)
T PF00996_consen  350 YIAYVSTTVET-SNPEEELEPALELLG  375 (438)
T ss_dssp             EEEEEEEEE-S-S-HHHHTHHHHHTT-
T ss_pred             EEEEEEeccCC-CCcHHHHHHHHHhhc
Confidence            99999998754 589999999998543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-68  Score=525.65  Aligned_cols=418  Identities=34%  Similarity=0.586  Sum_probs=330.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchh--------hhhhhhc---cCCCCC-------
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPS-------   80 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~--------~~~~~~~---~~~~~~-------   80 (539)
                      .|++|||||||||+.+++.|++.+|+|.+|||||+|+||||.|+||++.        .+.+..+   +..++.       
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~   84 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA   84 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence            5688999999999999999999999999999999999999999999987        3333321   111110       


Q ss_pred             ---CCCCCCccccccccc---------------cccccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccc
Q 009226           81 ---SVCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI  142 (539)
Q Consensus        81 ---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v  142 (539)
                         ..+....+.+++...               .+...+.+.+|+|++||. |+++|++|.++++|+++++.+|.||+.+
T Consensus        85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V  163 (547)
T KOG4405|consen   85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV  163 (547)
T ss_pred             CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence               001122333333221               111223357899999998 9999999999999999999999999999


Q ss_pred             cceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChh
Q 009226          143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK  222 (539)
Q Consensus       143 ~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~  222 (539)
                      ++.+... +|++..|||||+|+|+++.+++.|||+||||++++.+|..+.     ..+...++.+.||.|||++++++|+
T Consensus       164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~  237 (547)
T KOG4405|consen  164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK  237 (547)
T ss_pred             chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence            9998775 789999999999999999999999999999999999985211     1122345677899999999999999


Q ss_pred             HHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcc
Q 009226          223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV  302 (539)
Q Consensus       223 l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V  302 (539)
                      ++.+++++|+|..+++      .++.+|+.+.+.|+.|+||||+++  |+||.||.|||+|+|||+||++||.|+|+++|
T Consensus       238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V  309 (547)
T KOG4405|consen  238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV  309 (547)
T ss_pred             hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence            9999999999976543      468999999999999999999976  99999999999999999999999999999999


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCC-
Q 009226          303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS-  381 (539)
Q Consensus       303 ~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~-  381 (539)
                      +.|..+++.+++..+..+.|+++.|+.+|+.|.+. |... ...             ....+++|+++|++.++..... 
T Consensus       310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~~~-------------~~~K~Israv~itd~sil~~e~~  374 (547)
T KOG4405|consen  310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-CSR-------------VQLKQISRAVLITDPSILKTELD  374 (547)
T ss_pred             hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-ccc-------------cchhhcceeEEecCccccchhHH
Confidence            99999864444333334789999999999999887 4321 111             1233799999999999764331 


Q ss_pred             c--eEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeeccccchHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009226          382 N--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS  459 (539)
Q Consensus       382 ~--~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  459 (539)
                      .  .++..|+.. +  ....+++++.+++++.||+|.|++|+|  +.....++++++..+.+++..            +.
T Consensus       375 q~~~ll~~~~~e-p--g~~avr~iel~~~t~tc~kg~yLvhlT--~~~s~~~~ed~~S~~~kif~t------------~~  437 (547)
T KOG4405|consen  375 QQLSLLSLLAVE-P--GAMAVRLIELCSSTMTCPKGTYLVHLT--CLSSKTAREDLESDVVKIFTT------------EI  437 (547)
T ss_pred             hhhhhhhccccC-c--chhhHHHHHhhcccccCccceEEEEee--cccCcccccchhhhHHHHhhh------------hh
Confidence            1  234444332 1  245688999999999999999999998  444568899999999999962            11


Q ss_pred             cccccCCcceEeEEeEEEEcCcceE
Q 009226          460 EDMEEAKPTLLWSALYIQDLSLGYC  484 (539)
Q Consensus       460 ~~~~~~~p~ilw~~~~~~~~~~~~~  484 (539)
                      .+ +..||++||++||++++.+...
T Consensus       438 ~~-E~~kp~llw~~yf~~~~~s~~s  461 (547)
T KOG4405|consen  438 KN-ETSKPRLLWALYFTMRDSSVIS  461 (547)
T ss_pred             cc-ccccceehHHHHhhHHhhcccc
Confidence            12 3369999999999999988543

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=4e-61  Score=508.61  Aligned_cols=373  Identities=29%  Similarity=0.521  Sum_probs=314.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      |+++|||||||||++||++|++||++|++|+|+|+|++|||+++|++++++..|+... .++                 .
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~-~~~-----------------~   62 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPG-ETP-----------------P   62 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhccc-CCC-----------------c
Confidence            4678999999999999999999999999999999999999999999998865454221 110                 0


Q ss_pred             ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                      +.+ ...|.|++|+. |++++++|.++++|+++++.+|+||+.++..|++..+|+++++|+++.++|+++.+++.+||++
T Consensus        63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l  140 (443)
T PTZ00363         63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC  140 (443)
T ss_pred             hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence            112 35789999996 9999999999999999999999999999999987448999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccc--cccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~  256 (539)
                      |||++++.++....+.      ...  ++...|+.+||+++++++.+++++.+++++...+ +.  ...++.+++.++++
T Consensus       141 ~kfl~~v~~~~~~~~~------~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~  211 (443)
T PTZ00363        141 KNFLQYVSNYDENDPE------THKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKL  211 (443)
T ss_pred             HHHHHHHHhhccCChh------hhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHH
Confidence            9999999877532211      111  1345899999999999999999998888775211 00  01357789999999


Q ss_pred             HHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226          257 YNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (539)
Q Consensus       257 ~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~  336 (539)
                      |+.|+++||.+  +++||+||+++|+|+|||+++++||+|+||++|++|..++ ++++++|++++|++++|+.||++|++
T Consensus       212 y~~S~~~~g~~--p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~  288 (443)
T PTZ00363        212 YMDSLSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSY  288 (443)
T ss_pred             HHHHHhhccCC--cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECccc
Confidence            99999999964  4889999999999999999999999999999999998862 57788999999999999999999887


Q ss_pred             CCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCC
Q 009226          337 TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL  414 (539)
Q Consensus       337 ~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~  414 (539)
                      . |...                 ...++++|+|||+++|+...  .+.++++||+.+++.  .+.||++++|+++++||+
T Consensus       289 ~-p~~~-----------------~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~  348 (443)
T PTZ00363        289 F-PDKV-----------------KKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPK  348 (443)
T ss_pred             c-cccc-----------------ccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCC
Confidence            6 3210                 13678999999999999653  245689999988753  567999999999999999


Q ss_pred             CcEEEEEEEeeccccchHHHHHHHHHHHHh
Q 009226          415 GMFVLYFSALCDEVNQGKKLLHAALSALQK  444 (539)
Q Consensus       415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~~  444 (539)
                      |+||+|+||.+++ .+++++|+++++.|+.
T Consensus       349 g~~i~~~st~~~t-~~~~~~l~~~~~~l~~  377 (443)
T PTZ00363        349 GKYIAIISTTVET-NNPEKEIEPALKLLGP  377 (443)
T ss_pred             CcEEEEEEEecCC-CCHHHHHHHHHHHhcc
Confidence            9999999998876 6999999999999995

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-54  Score=427.33  Aligned_cols=370  Identities=31%  Similarity=0.543  Sum_probs=308.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      +.+|||||+|||+.+++.+++|+++|++|+|+|||++|||-.+|+++.++.+|+.......                 .+
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~   64 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE   64 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence            4569999999999999999999999999999999999999999999988888886442110                 01


Q ss_pred             cccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHH
Q 009226          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~  179 (539)
                      .. ...|.|++||. |+++++.++++++|+..++.+|++|+.+...|++. +|++++||.++.++|+++.+++.+||.+|
T Consensus        65 ~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~  141 (440)
T KOG1439|consen   65 KL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM  141 (440)
T ss_pred             cc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence            11 36789999998 99999999999999999999999999999999987 77999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCcccccccccccc-ccC-CcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHH
Q 009226          180 RFFKLVQGHLSLDESEENNVRISEE-DLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (539)
Q Consensus       180 kfl~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~  257 (539)
                      ||+.++.++.+..+.      .+.. +.. .++.+|+.++++....+++..+++++...+.-   -..++.+++.+|++|
T Consensus       142 kFl~~V~n~~e~~~~------~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~---ld~p~~~~~~ri~~Y  212 (440)
T KOG1439|consen  142 KFLKFVLNYDEEDPK------TWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSY---LDQPAKETLERILLY  212 (440)
T ss_pred             HHHHHHhhhhhhccc------cccccccccchHHHHHHHhcccccceeeeeeeeEEEecchh---ccCccHHHHHHHHHH
Confidence            999999987543322      1222 222 38999999999999999998887776532211   124688999999999


Q ss_pred             HHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009226          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (539)
Q Consensus       258 l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~  337 (539)
                      ++|+++||+++  ++||+||.|||+|+|||.+++.||+|+||+++.+|...+ +|++++|+ +.++..+++++|++|+|.
T Consensus       213 ~~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~  288 (440)
T KOG1439|consen  213 VRSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF  288 (440)
T ss_pred             HHHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc
Confidence            99999999765  899999999999999999999999999999999998854 68888887 567778899999999886


Q ss_pred             CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCC
Q 009226          338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG  415 (539)
Q Consensus       338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G  415 (539)
                       +.-                 ....+++.|++||++.|...  +.+.++++||+.+.+  ..+.|||...|+....||+|
T Consensus       289 -~~~-----------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~--rksdi~v~~~ss~~~vcpeG  348 (440)
T KOG1439|consen  289 -PQK-----------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVG--RKSDIYVFGLSSAHNVCPEG  348 (440)
T ss_pred             -hHH-----------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhC--CcccEEEEEeccCCCcCCCc
Confidence             221                 11245799999999988653  445678899987665  36789999999999999999


Q ss_pred             cEEEEEEEeeccccchHHHHHHHHHHHH
Q 009226          416 MFVLYFSALCDEVNQGKKLLHAALSALQ  443 (539)
Q Consensus       416 ~~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (539)
                      +||.|+||..++ ..++..+.++++.|-
T Consensus       349 ~yia~vsT~~Et-~~pE~ei~~~lellg  375 (440)
T KOG1439|consen  349 KYIAYVSTTVET-PNPEVEILPGLELLG  375 (440)
T ss_pred             eEEEEEEeccCC-CChHHhhhhHHHhhC
Confidence            999999996654 467777777777664

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-51  Score=403.08  Aligned_cols=369  Identities=31%  Similarity=0.538  Sum_probs=305.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      +.+.|||||+|||+.+++.+++|+.+|++|+|+|+|++||+-.+|++..++.+|..+....+.                 
T Consensus         3 ~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~-----------------   65 (434)
T COG5044           3 EETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPS-----------------   65 (434)
T ss_pred             ccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhcccc-----------------
Confidence            345799999999999999999999999999999999999999999999998888876632110                 


Q ss_pred             ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                        .....+.|++||. |+++++.++++.+|++.++.+|++|+.+...|++. +|+++++|.++.++|.++.+++.+||.+
T Consensus        66 --k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~v  141 (434)
T COG5044          66 --KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRV  141 (434)
T ss_pred             --ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHH
Confidence              1125688999998 99999999999999999999999999999999887 6799999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~-~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~  257 (539)
                      |||++++..+.+..      ...-+.+.++++.+|+. +|+++.....++.+++++. ++.+     .++++++.+|.+|
T Consensus       142 mrFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~-ldl~-----~p~re~~erIl~Y  209 (434)
T COG5044         142 MRFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLD-----IPAREALERILRY  209 (434)
T ss_pred             HHHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh-cccc-----CCchHHHHHHHHH
Confidence            99999998885421      11112455688899987 6999999999999998875 2332     5789999999999


Q ss_pred             HHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009226          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (539)
Q Consensus       258 l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~  337 (539)
                      ++|++.||..|  ++||+||.+||+|.|||.+++.||+|+||+++.+|.-.   ..+.+|. .++.+..|.++|.+|++.
T Consensus       210 ~~Sf~~yg~~p--yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~  283 (434)
T COG5044         210 MRSFGDYGKSP--YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF  283 (434)
T ss_pred             HHhhcccCCCc--ceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc
Confidence            99999999754  99999999999999999999999999999999998643   2234665 577889999999988875


Q ss_pred             CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEec-CC--CCCCCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCC
Q 009226          338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL  414 (539)
Q Consensus       338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~-~~--l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~  414 (539)
                       +.   +.. ..+          ....+.|++||.. .|  +....+.++++|||.++..  .+.|+|..+|+.+..||+
T Consensus       284 -~~---~~~-~~~----------q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPE  346 (434)
T COG5044         284 -RE---DSK-SVG----------QFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPE  346 (434)
T ss_pred             -cc---ccc-ccc----------hhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCC
Confidence             21   100 000          1136899999977 54  3344467899999998764  456999999999999999


Q ss_pred             CcEEEEEEEeeccccchHHHHHHHHHHHHh
Q 009226          415 GMFVLYFSALCDEVNQGKKLLHAALSALQK  444 (539)
Q Consensus       415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~~  444 (539)
                      |++|.|++|..++ ..++..+.++++.|..
T Consensus       347 Gy~l~yisT~~et-~~~e~ei~~~lell~~  375 (434)
T COG5044         347 GYYLAYISTIDET-PTPEDEILAALELLGP  375 (434)
T ss_pred             ceEEEEEEeccCC-CChHHHHHHHHHhhcc
Confidence            9999999996543 5788888888886653

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.95  E-value=3.8e-26  Score=248.80  Aligned_cols=389  Identities=14%  Similarity=0.105  Sum_probs=231.5

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH  104 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (539)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.+                                     
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~-------------------------------------   43 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD-------------------------------------   43 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence            6999999999999999999999999999999999999998653                                     


Q ss_pred             CCCeEEecCCCEEEecChHHHHHHhcCCc--cccccccccccee-eEccCCceeecCCCHHHHHhc-cCCChhhHHHHHH
Q 009226          105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR  180 (539)
Q Consensus       105 ~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~--~~y~ef~~v~~~~-~~~~~g~l~~vP~s~~~vf~~-~~ls~~ek~~l~k  180 (539)
                        +|.+|. |++++..++.+.+++...|.  .++++|...++.+ ++..+|+.+.++.+.+..... ..+++.+...+.+
T Consensus        44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  120 (502)
T TIGR02734        44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR  120 (502)
T ss_pred             --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence              366788 58887766666677777663  5678888777655 334467778888776532221 2234556666777


Q ss_pred             HHHHHHhhccc-------Ccccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhcc
Q 009226          181 FFKLVQGHLSL-------DESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (539)
Q Consensus       181 fl~~~~~~~~~-------~~~~~--~~-----~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s  246 (539)
                      |++.++.....       .+...  ..     ......+...|+.+|++++..++.++.++.+......  .++  .+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g--~~p--~~~~  196 (502)
T TIGR02734       121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG--GNP--FRTP  196 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec--cCc--ccch
Confidence            66655432210       00000  00     0111233568999999998888899987753211111  111  1122


Q ss_pred             chhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEE
Q 009226          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (539)
Q Consensus       247 ~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~  326 (539)
                      +..   .+..+.    .+.   +.+.+|.+|++.++++|.+.++..|++|+++++|++|..+  ++++++|++++|+++.
T Consensus       197 ~~~---~l~~~~----~~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~  264 (502)
T TIGR02734       197 SIY---ALISAL----ERE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD  264 (502)
T ss_pred             HHH---HHHHHH----Hhh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence            211   111111    111   1256999999999999999999999999999999999887  6778899999999999


Q ss_pred             cCEEEECCC--CCCCCCCcccchhhhhhh-hhcccCCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCC--------
Q 009226          327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL--------  392 (539)
Q Consensus       327 Ad~VI~~p~--~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~vsr~i~I~~---~~l~~~~~~~~~~~p~~~~--------  392 (539)
                      ||+||++.+  .++..|+ +.+ ..+... +.+.............+.++   .++.....+.++..+....        
T Consensus       265 ad~VI~a~~~~~~~~~l~-~~~-~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (502)
T TIGR02734       265 ADAVVSNADLHHTYRRLL-PNH-PRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK  342 (502)
T ss_pred             CCEEEECCcHHHHHHHhc-Ccc-ccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence            999997543  2322332 111 111111 11111111111222222244   3332222222333231100        


Q ss_pred             CC-CCCceEEEEEeCCC-CccCCCCcEEEEEEEeeccc----cchHHHHHHHHHHHHhhhhcCCCCCCCCccccccccCC
Q 009226          393 FP-EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEV----NQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAK  466 (539)
Q Consensus       393 ~~-~~~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~~~----~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  466 (539)
                      +. ...+.+|+...+.. ++.+|+|+.++++.+.++..    .+-++.-+.+.++++.....         .  ..-+.+
T Consensus       343 g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~il~~l~~---------~--~~p~l~  411 (502)
T TIGR02734       343 GRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILAYLEE---------R--AIPGLR  411 (502)
T ss_pred             CCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHHHHHHHHHHH---------h--cCCChh
Confidence            00 12567888887664 58899999999888866532    11123344555555543210         0  001345


Q ss_pred             cceEeEEeEEEEcCcc
Q 009226          467 PTLLWSALYIQDLSLG  482 (539)
Q Consensus       467 p~ilw~~~~~~~~~~~  482 (539)
                      .+|++.-..||.+...
T Consensus       412 ~~i~~~~~~TP~t~~~  427 (502)
T TIGR02734       412 DRIVVERTFTPADFRD  427 (502)
T ss_pred             HheEEEEEcCHHHHHH
Confidence            5677776666665443

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=1.9e-25  Score=241.49  Aligned_cols=260  Identities=20%  Similarity=0.268  Sum_probs=169.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      |..+||||||||++||+||+.|||+|++|+|||||+++||+++|++++                                
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------------------   48 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------------------   48 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence            456999999999999999999999999999999999999999998764                                


Q ss_pred             cccCCCCCeEEecCCCEEEecChHHHHHHhcCC-cccc-ccccccccee-eEccCCceeecCCCHHHHHh-ccCCChhhH
Q 009226          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK  175 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~-~~~y-~ef~~v~~~~-~~~~~g~l~~vP~s~~~vf~-~~~ls~~ek  175 (539)
                             +|.+|. ||+++...... .++.+.+ ...+ +++...++.+ ++..+|+...+..+.+.... ....++.+.
T Consensus        49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~  119 (487)
T COG1233          49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG  119 (487)
T ss_pred             -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence                   366677 47766555543 4444444 4444 6776666665 34445788888777654332 223445555


Q ss_pred             HHHHHHHHHHHhhccc----Ccc-cccc----ccc------cccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcch
Q 009226          176 NQLMRFFKLVQGHLSL----DES-EENN----VRI------SEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (539)
Q Consensus       176 ~~l~kfl~~~~~~~~~----~~~-~~~~----~~~------~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~  240 (539)
                      ..+++++..+.+..+.    ... ....    ...      .......+..+++..+..++.++..+.+......  ..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~--~~p  197 (487)
T COG1233         120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG--APP  197 (487)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC
Confidence            5666665543321110    000 0000    000      0112235666677655556777777666433221  121


Q ss_pred             hhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC
Q 009226          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (539)
Q Consensus       241 ~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~  320 (539)
                      .   ...  ++..+..   .++ +.  .| +.||+||++.|+++|.+.++++||+|+++++|++|.++  +|+.++|++.
T Consensus       198 ~---~~~--a~~~~~~---~~~-~~--~G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~  263 (487)
T COG1233         198 S---TPP--ALYLLLS---HLG-LS--GG-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS  263 (487)
T ss_pred             C---chh--HHHHHHH---Hhc-cc--CC-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence            0   011  2222221   111 22  12 67999999999999999999999999999999999998  7777788877


Q ss_pred             CCcEEEcCEEEECCCC
Q 009226          321 SGQDILSHKLVLDPSF  336 (539)
Q Consensus       321 ~G~~i~Ad~VI~~p~~  336 (539)
                      +|+.+.+|.||++.+.
T Consensus       264 ~g~~~~ad~vv~~~~~  279 (487)
T COG1233         264 DGENIEADAVVSNADP  279 (487)
T ss_pred             ccceeccceeEecCch
Confidence            8878999999986554

>TIGR02730 carot_isom carotene isomerase

Probab=99.94  E-value=1e-24  Score=236.92  Aligned_cols=387  Identities=13%  Similarity=0.127  Sum_probs=222.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      |||||||+|++||++|+.|+++|++|+||||++.+||++++++.+|                                  
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG----------------------------------   46 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence            6999999999999999999999999999999999999999987654                                  


Q ss_pred             CCCCCeEEecCCCEEEe------cChHHHHHHhcCCccccccccccccee-eEccCCceeecCCCHHHHHhc-cCCChhh
Q 009226          103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME  174 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~------~~~~lv~~L~~s~~~~y~ef~~v~~~~-~~~~~g~l~~vP~s~~~vf~~-~~ls~~e  174 (539)
                           |.+|. |++.+.      ....+.+.|...+.  .+++......+ +...+|....++.+.+..... ....+.+
T Consensus        47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~  118 (493)
T TIGR02730        47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE  118 (493)
T ss_pred             -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence                 33444 244432      11223334433332  23333322222 222356667777776543321 2234677


Q ss_pred             HHHHHHHHHHHHhhccc---C---c--cccccc------c----ccccccCCcHHHHHHhcCCChhHHHHHHH-HHhccc
Q 009226          175 KNQLMRFFKLVQGHLSL---D---E--SEENNV------R----ISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMAD  235 (539)
Q Consensus       175 k~~l~kfl~~~~~~~~~---~---~--~~~~~~------~----~~~~~~~~~~~efL~~~~l~~~l~~~l~~-~i~l~~  235 (539)
                      ...+.+|++.+.+....   .   .  ......      .    ....+...++.++++++..++.++.++.+ +.....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~  198 (493)
T TIGR02730       119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV  198 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence            77788887765432110   0   0  000000      0    01123457889999998899999998763 222221


Q ss_pred             CCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEE
Q 009226          236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (539)
Q Consensus       236 ~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~  315 (539)
                      .+.+    +.+.   +..+..+.  ...++    .+.+|.||+++|+++|.+.++.+||+|+++++|++|.++  ++++.
T Consensus       199 ~p~~----~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~  263 (493)
T TIGR02730       199 VPAD----QTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAV  263 (493)
T ss_pred             CCcc----cchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEE
Confidence            1111    1112   11111111  11122    257999999999999999999999999999999999887  67888


Q ss_pred             EEEeCCCcEEEcCEEEECCC--CCCCCCCcc--cchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCC
Q 009226          316 GVRLASGQDILSHKLVLDPS--FTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPR  390 (539)
Q Consensus       316 gV~l~~G~~i~Ad~VI~~p~--~~~~~l~~~--~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~-~~~~~~~p~~  390 (539)
                      +|++.+|+++.||+||++..  .++..|+..  .++..+...+.+..+  . ......+.++.++.|.. ....+.++.-
T Consensus       264 gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s--~-s~~~~~l~l~~~~~p~~~~~~~~~~~~~  340 (493)
T TIGR02730       264 GVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKS--P-SFLSLHLGVKADVLPPGTECHHILLEDW  340 (493)
T ss_pred             EEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCC--C-ceEEEEEEecCccCCCCCCccEEecchh
Confidence            99999999999999997533  333333211  111111111222111  1 12233334566543322 1122333421


Q ss_pred             CCCCCCCceEEEEEeCCC-CccCCCCcEEEEEEEeecccc-------chHHHHHHHHHHHHhhhhcCCCCCCCCcccccc
Q 009226          391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEVN-------QGKKLLHAALSALQKLLVTGTAGNSSTAQSEDM  462 (539)
Q Consensus       391 ~~~~~~~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~~~~-------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  462 (539)
                      .......+.+|+...+.. ++.+|+|+.++++.++.....       +-++.-+.+.++++....         ..-   
T Consensus       341 ~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~---------~~~---  408 (493)
T TIGR02730       341 TNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLE---------KIF---  408 (493)
T ss_pred             hccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHH---------HHC---
Confidence            111123567888887654 578999999988776532211       112233445555554320         000   


Q ss_pred             ccCCcceEeEEeEEEEcCc
Q 009226          463 EEAKPTLLWSALYIQDLSL  481 (539)
Q Consensus       463 ~~~~p~ilw~~~~~~~~~~  481 (539)
                      -+.+.+|+|.-..||.+..
T Consensus       409 p~l~~~I~~~~~~TP~t~~  427 (493)
T TIGR02730       409 PGLDSAIDYKEVGTPRTHR  427 (493)
T ss_pred             CChhhcEEEEEeeCchhHH
Confidence            1345678888888877754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.94  E-value=1.7e-24  Score=235.35  Aligned_cols=383  Identities=12%  Similarity=0.044  Sum_probs=210.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      .||||||||++||+||+.|+++|++|+|||+++++||++++++.+                                   
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~-----------------------------------   46 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR-----------------------------------   46 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence            599999999999999999999999999999999999999998654                                   


Q ss_pred             CCCCCeEEecCCCEEEec---ChHHHHHHhcCCccccccccccccee-eEccCC-ceeecCCCHHHHHhc-cCCChhhHH
Q 009226          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN  176 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~~---~~~lv~~L~~s~~~~y~ef~~v~~~~-~~~~~g-~l~~vP~s~~~vf~~-~~ls~~ek~  176 (539)
                          +|.+|. |++++..   .+.+-+++.+.|+... ++...++.+ ++..|| +.+.++.+.+..... ....+.+.+
T Consensus        47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~  120 (492)
T TIGR02733        47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER  120 (492)
T ss_pred             ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence                366677 4777643   3334455666665421 123333332 233455 345556665332210 011222321


Q ss_pred             HHHHHHHHH----HhhcccCc----c-cc----------ccccccccccCCcHHHHHHhc--CCChhHHHHHHHHHhccc
Q 009226          177 QLMRFFKLV----QGHLSLDE----S-EE----------NNVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMAD  235 (539)
Q Consensus       177 ~l~kfl~~~----~~~~~~~~----~-~~----------~~~~~~~~~~~~~~~efL~~~--~l~~~l~~~l~~~i~l~~  235 (539)
                       +++.+..+    .......+    . ..          ........+...|+.+|++++  ..++.++.++....... 
T Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~-  198 (492)
T TIGR02733       121 -FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLY-  198 (492)
T ss_pred             -HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhh-
Confidence             11111100    00000000    0 00          000000123358899999986  45778888775422211 


Q ss_pred             CCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEE
Q 009226          236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (539)
Q Consensus       236 ~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~  315 (539)
                       ...+ +.+.++..++.     +..+....  .| +.||+||+++|+++|.+.++..||+|+++++|++|.++  ++++.
T Consensus       199 -~~~~-~~~~~~~~~~~-----~~~~~~~~--~G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~  266 (492)
T TIGR02733       199 -SQED-ADETAALYGAT-----VLQMAQAP--HG-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAG  266 (492)
T ss_pred             -ccCC-hhhhhHHHHHH-----HhhccccC--CC-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEE
Confidence             1111 01122221111     11111111  12 46899999999999999999999999999999999987  66667


Q ss_pred             EEEeCCC-----cEEEcCEEEECCC-CCCCCCCcccchhhhhhhh-hcccCCCcceEEEEEEEecCCCCC-C-CCceEEE
Q 009226          316 GVRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQ-AFSLSDNKGKVARGICITRSSLKP-D-LSNFLVI  386 (539)
Q Consensus       316 gV~l~~G-----~~i~Ad~VI~~p~-~~~~~l~~~~~~~l~~~~~-~l~~~~~~~~vsr~i~I~~~~l~~-~-~~~~~~~  386 (539)
                      +|++.+|     +++.||+||++.+ ..+..++ + ++.++..+. .+.+...........+.++....+ . ..+....
T Consensus       267 gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~  344 (492)
T TIGR02733       267 WVVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFL  344 (492)
T ss_pred             EEEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeec
Confidence            7777665     6799999997633 2223332 1 122332222 221111111122233345553211 1 1122222


Q ss_pred             eCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeecccc-------chHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009226          387 FPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVN-------QGKKLLHAALSALQKLLVTGTAGNSSTAQS  459 (539)
Q Consensus       387 ~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~-------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  459 (539)
                      +.+       ...+|+...+.+++.+|+|+.++++++.++...       +-++.-+...++++.....         .-
T Consensus       345 ~~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~---------~~  408 (492)
T TIGR02733       345 SDH-------QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGH---------YF  408 (492)
T ss_pred             cCC-------CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHH---------HC
Confidence            221       226888777777788999999998887664221       1134444466666654311         00


Q ss_pred             cccccCCcceEeEEeEEEEcCc
Q 009226          460 EDMEEAKPTLLWSALYIQDLSL  481 (539)
Q Consensus       460 ~~~~~~~p~ilw~~~~~~~~~~  481 (539)
                         -+.+.+|++.-..||.+..
T Consensus       409 ---p~l~~~i~~~~v~TP~t~~  427 (492)
T TIGR02733       409 ---DLLEENWVHVELATPRTFE  427 (492)
T ss_pred             ---CCccccEEEEEccCCchHH
Confidence               1345567777677766544

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.92  E-value=2e-22  Score=217.27  Aligned_cols=351  Identities=15%  Similarity=0.153  Sum_probs=207.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (539)
                      ..||+|||||++||+||..|+++    |++|+|+|+++++||+++|++.+                              
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------   51 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------   51 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence            36999999999999999999999    99999999999999999996543                              


Q ss_pred             cccccCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHH
Q 009226           98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (539)
Q Consensus        98 ~~~~~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~  176 (539)
                               +|.+|+ |++.++..+ .+.+++.+.|+..+..+..-...+++..+|+++++|.+..+.++...+++.+|.
T Consensus        52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~  121 (462)
T TIGR00562        52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL  121 (462)
T ss_pred             ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence                     355677 588886665 488888888887765443333344444238888999877666666666655544


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHH
Q 009226          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (539)
Q Consensus       177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~  256 (539)
                      .+.  +.....      .        ....+.++.+|+++..-++....++. .+....+..++  +++++..++..+..
T Consensus       122 ~~~--~~~~~~------~--------~~~~d~s~~e~l~~~~g~~~~~~~~~-p~~~~~~~~~~--~~ls~~~~~~~~~~  182 (462)
T TIGR00562       122 RAG--MDFIRP------A--------SPGKDESVEEFVRRRFGDEVVENLIE-PLLSGIYAGDP--SKLSLKSTFPKFYQ  182 (462)
T ss_pred             Hhh--hhhccC------C--------CCCCCcCHHHHHHHhcCHHHHHHHHH-HHhcccccCCH--HHhhHHHHhHHHHH
Confidence            332  111100      0        01235899999986433333333332 22222233332  33566655544322


Q ss_pred             HHH-------hh------------hhccCCCcc-EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEE
Q 009226          257 YNS-------SI------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (539)
Q Consensus       257 ~l~-------s~------------g~~g~~~ga-~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~g  316 (539)
                      ...       .+            ..+....+. +.++++|+++|++++++.+.  .++|++|++|++|..+  +++ +.
T Consensus       183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~  257 (462)
T TIGR00562       183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT  257 (462)
T ss_pred             HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence            111       10            001111122 56789999999999887553  3789999999999875  333 46


Q ss_pred             EEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC-CCCCCceEEEeCCCCCCC
Q 009226          317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KPDLSNFLVIFPPRSLFP  394 (539)
Q Consensus       317 V~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l-~~~~~~~~~~~p~~~~~~  394 (539)
                      |++++|+++.||+||++ |...+..++    ++++...........+..+....+.++.+. ........+..|....  
T Consensus       258 v~~~~g~~~~ad~VI~t~P~~~~~~ll----~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~--  331 (462)
T TIGR00562       258 LELDNGVTVETDSVVVTAPHKAAAGLL----SELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSK--  331 (462)
T ss_pred             EEECCCcEEEcCEEEECCCHHHHHHHh----cccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCC--
Confidence            77778889999999975 443333332    112222222223334566777777777763 3323344445553321  


Q ss_pred             CCCceEEEEEeCCC-CccCCCCcEEEEEEEeecc-----ccchHHHHHHHHHHHHh
Q 009226          395 EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQK  444 (539)
Q Consensus       395 ~~~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~  444 (539)
                        .....+...++. ...+|+|..++.+......     ..+.++.++.+++.|-+
T Consensus       332 --~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~  385 (462)
T TIGR00562       332 --FAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKK  385 (462)
T ss_pred             --CceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHH
Confidence              122223333222 4678989877755432221     11334555555555554

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07233 hypothetical protein; Provisional

Probab=99.91  E-value=5.4e-22  Score=211.76  Aligned_cols=347  Identities=15%  Similarity=0.144  Sum_probs=195.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (539)
                      +|||||||++||+||..|+++|++|+|||+++++||+++++..+|                                   
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g-----------------------------------   45 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG-----------------------------------   45 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence            599999999999999999999999999999999999999987643                                   


Q ss_pred             CCCCeEEecCCCEEEec-ChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHHHH
Q 009226          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (539)
Q Consensus       104 ~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~kfl  182 (539)
                          |.+|. |.+.++. ...+.+++.+.|+.....+......+.+  +|+.++++ +..++++...+++.++..+...+
T Consensus        46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  117 (434)
T PRK07233         46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLG-TPLELLRFPHLSLIDKFRLGLLT  117 (434)
T ss_pred             ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCC-CHHHHHcCCCCCHHHHHHhHHHH
Confidence                22233 2343332 2366777888887655555433322222  56655443 23344444556665555433322


Q ss_pred             HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhh
Q 009226          183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG  262 (539)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g  262 (539)
                      ......           ....++...++.+||+++..++..+.++.. +....+..++  +++++..++..+..+...  
T Consensus       118 ~~~~~~-----------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~s~~~~~~~~~~~~~~--  181 (434)
T PRK07233        118 LLARRI-----------KDWRALDKVPAEEWLRRWSGEGVYEVFWEP-LLESKFGDYA--DDVSAAWLWSRIKRRGNR--  181 (434)
T ss_pred             Hhhhhc-----------ccccccccccHHHHHHHhcCHHHHHHHHHH-HHhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence            111110           001234568999999976544444554432 1111122222  335665554444322110  


Q ss_pred             hccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009226          263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS  341 (539)
Q Consensus       263 ~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l  341 (539)
                      ........+.+|++|++.|+++|.+.+...|++|++|++|++|..+  +++++++. .+|+++.||+||++ |...+..+
T Consensus       182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l  258 (434)
T PRK07233        182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL  258 (434)
T ss_pred             ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence            0000011267999999999999999999999999999999999876  55655554 57889999999965 43333343


Q ss_pred             CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCCC-CccCCCCcEEEE
Q 009226          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN-LAVCPLGMFVLY  420 (539)
Q Consensus       342 ~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~-~~~cP~G~~vi~  420 (539)
                      + +   +++...................+-+++++.+   ...+.++....     ....+...+.. ...+|+|..+++
T Consensus       259 l-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~g~~~~~  326 (434)
T PRK07233        259 V-P---DLPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGA-----PFGGVIEHTNLVPPERYGGEHLVY  326 (434)
T ss_pred             c-C---CCcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCC-----CcceEEEecccCCccccCCceEEE
Confidence            2 1   1221111111222233444445556777543   22222221111     11222333322 345667877766


Q ss_pred             EEEeeccc-----cchHHHHHHHHHHHHh
Q 009226          421 FSALCDEV-----NQGKKLLHAALSALQK  444 (539)
Q Consensus       421 ~st~~~~~-----~~~~~~l~~~~~~l~~  444 (539)
                      ++..+...     .+.++.++.+++.|-+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  355 (434)
T PRK07233        327 LPKYLPGDHPLWQMSDEELLDRFLSYLRK  355 (434)
T ss_pred             EeeecCCCChhhcCCHHHHHHHHHHHHHH
Confidence            65544321     1224455555555544

>PLN02576 protoporphyrinogen oxidase

Probab=99.91  E-value=8.8e-22  Score=214.23  Aligned_cols=292  Identities=17%  Similarity=0.179  Sum_probs=181.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (539)
                      .+..+||||||||++||+||.+|+++ |++|+|||+++++||++.|++.+                              
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~------------------------------   58 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED------------------------------   58 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC------------------------------
Confidence            34567999999999999999999999 99999999999999999997543                              


Q ss_pred             cccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccc-cceeeEccCCceeecCCCHHHHHhccCCChhhHH
Q 009226           98 SRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (539)
Q Consensus        98 ~~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v-~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~  176 (539)
                               .|.+|. ||+.+...++.+..+.+.++.+++.|... ...|++. +|+++++|.+..+.+....+++.+|.
T Consensus        59 ---------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~  127 (496)
T PLN02576         59 ---------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKI  127 (496)
T ss_pred             ---------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHH
Confidence                     255677 58888777776666766688777665432 2344554 88999999887776666667766655


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHH
Q 009226          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (539)
Q Consensus       177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~  256 (539)
                      .+..-.  . ....  .        .....+.++.+|+++. +.+.+.+.+...+....+..++  .++|+..++..+..
T Consensus       128 ~~~~~~--~-~~~~--~--------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~  191 (496)
T PLN02576        128 RAGLGA--F-GWKR--P--------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWN  191 (496)
T ss_pred             HHhHHH--h-hccC--C--------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHH
Confidence            433211  0 1100  0        0113468999999975 4555544443332222233333  44666665554333


Q ss_pred             HHHhhh--------hc----------------c-CCCccEEeecCCcChHHHHHHHHHHHCC-cEEEeCCcceEEEEecC
Q 009226          257 YNSSIG--------RF----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQN  310 (539)
Q Consensus       257 ~l~s~g--------~~----------------g-~~~ga~lyp~gG~geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~  310 (539)
                      .-.+.|        +.                . ...+.+.++++|+++|+++|++.   +| +.|++|++|++|..+  
T Consensus       192 ~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~--  266 (496)
T PLN02576        192 LEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKN--  266 (496)
T ss_pred             HHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEEC--
Confidence            211100        00                0 01122567899999999988753   46 789999999999876  


Q ss_pred             CCcEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          311 SGSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       311 ~g~~~gV~l--~~G~-~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                      ++..+.|++  .+|+ ++.||+||+. |...+..++.+..   ++..+.+ ....+..+....+.+++++
T Consensus       267 ~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l-~~~~~~~~~~v~l~~~~~~  332 (496)
T PLN02576        267 DDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADAL-PEFYYPPVAAVTTSYPKEA  332 (496)
T ss_pred             CCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHh-ccCCCCceEEEEEEEchHH
Confidence            333133433  3453 6999999974 5444344321111   2222222 2233445666666677753

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.90  E-value=1.7e-21  Score=210.11  Aligned_cols=325  Identities=12%  Similarity=0.150  Sum_probs=188.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhC------CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY   96 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~------G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (539)
                      .+|||||||++||+||..|+++      |.+|+|||+++++||+++|.+.+                             
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~-----------------------------   52 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK-----------------------------   52 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence            3699999999999999999996      37999999999999999997543                             


Q ss_pred             ccccccCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCC--------HHHHHhc
Q 009226           97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD  167 (539)
Q Consensus        97 ~~~~~~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s--------~~~vf~~  167 (539)
                                .|.+|+ |++.++.. ..+.+++.+.|+..+..+..-...+++. +|++.++|.+        ..+.++.
T Consensus        53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~  120 (463)
T PRK12416         53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS  120 (463)
T ss_pred             ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence                      245677 57777554 3567888888887765554433455554 5666666543        3333444


Q ss_pred             cCCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccc
Q 009226          168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (539)
Q Consensus       168 ~~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~  247 (539)
                      ..++...|...+      ...... .        ...+.+.|+.+|+++..-++..+.++. .+...-+..++  .++++
T Consensus       121 ~~~~~~~~~~~~------~~~~~~-~--------~~~~~~~sv~~~l~~~~~~~~~~~~~~-p~~~~~~~~~~--~~ls~  182 (463)
T PRK12416        121 TLVSTKGKIVAL------KDFITK-N--------KEFTKDTSLALFLESFLGKELVERQIA-PVLSGVYSGKL--NELTM  182 (463)
T ss_pred             CcCCHHHHHHhh------hhhccC-C--------CCCCCCCCHHHHHHHhcCHHHHHHHHH-HHhcccccCCc--ccccH
Confidence            444433332211      111100 0        012346899999997433333333332 21122133332  23555


Q ss_pred             hhHHHHHHHHHHhhhh-----------c-cCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEE
Q 009226          248 RDGINRLALYNSSIGR-----------F-QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (539)
Q Consensus       248 ~~~l~~i~~~l~s~g~-----------~-g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~  315 (539)
                      ...+..+..+....+.           + +.....+.++++|++.|+++|++.+..  ++|++|++|++|..+  +++ +
T Consensus       183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~  257 (463)
T PRK12416        183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y  257 (463)
T ss_pred             HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence            4444444333222111           0 011123778999999999999876543  689999999999876  444 5


Q ss_pred             EEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC-CCCceEEEeCCCCCC
Q 009226          316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLF  393 (539)
Q Consensus       316 gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~-~~~~~~~~~p~~~~~  393 (539)
                      .|++.+|+++.||+||++ |...+..+.  .++++++...++    ....+....+.++.+... ......+++|+..  
T Consensus       258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~--  329 (463)
T PRK12416        258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDEQLPADGTGFIVTENS--  329 (463)
T ss_pred             EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence            677778889999999975 443334443  344555544443    234566666667765321 1123445555432  


Q ss_pred             CCCCceEEEEEeCCC--CccCCCCcEEEEEE
Q 009226          394 PEQVTSIRVLQLGGN--LAVCPLGMFVLYFS  422 (539)
Q Consensus       394 ~~~~~~v~v~~~ss~--~~~cP~G~~vi~~s  422 (539)
                         ...+-...+.+.  ...+|++..++.++
T Consensus       330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~  357 (463)
T PRK12416        330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMF  357 (463)
T ss_pred             ---CCeEEEEEeecCCCCCcCCCCeEEEEEE
Confidence               111222223322  23567777666554

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.89  E-value=4.3e-21  Score=206.03  Aligned_cols=325  Identities=14%  Similarity=0.163  Sum_probs=184.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      +|||||||++||+||..|+++|  ++|+|||+++++||+++|++.++                                 
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g---------------------------------   48 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG---------------------------------   48 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence            6999999999999999999988  89999999999999999976543                                 


Q ss_pred             cCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCH--------HHHHhccCCCh
Q 009226          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL  172 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~--------~~vf~~~~ls~  172 (539)
                            +.+|+ |++.++..+ .+.+++.+.|+..+..+..-...+++. +|+++++|...        ...+..+.++.
T Consensus        49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~  120 (451)
T PRK11883         49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP  120 (451)
T ss_pred             ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence                  34566 465444433 577788888886554333212224443 77777776421        11111122221


Q ss_pred             hhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHH
Q 009226          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (539)
Q Consensus       173 ~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~  252 (539)
                      .++...      ......         .......+.++.+||++. +++...+.++..+....+..++  .++|+..++.
T Consensus       121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  182 (451)
T PRK11883        121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP  182 (451)
T ss_pred             HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence            111110      001000         001234568999999863 4444433333222222222222  3355555444


Q ss_pred             HHHHHHHhhh-----------hcc-CCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC
Q 009226          253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (539)
Q Consensus       253 ~i~~~l~s~g-----------~~g-~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~  320 (539)
                      .+..+....+           ... .....+.++++|++.|+++|++.+...  +|++|++|++|..+  ++. +.|.++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~  257 (451)
T PRK11883        183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS  257 (451)
T ss_pred             HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence            4433322111           000 001225689999999999887754322  89999999999876  443 567778


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCce
Q 009226          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS  399 (539)
Q Consensus       321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~  399 (539)
                      +|+++.||+||++ |...+..+.  .++++.+..    ++..+..+.+..+.++.++...+....+.+++..     +.+
T Consensus       258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~  326 (451)
T PRK11883        258 NGGEIEADAVIVAVPHPVLPSLF--VAPPAFALF----KTIPSTSVATVALAFPESATNLPDGTGFLVARNS-----DYT  326 (451)
T ss_pred             CCCEEEcCEEEECCCHHHHHHhc--cChhHHHHH----hCCCCCceEEEEEEeccccCCCCCceEEEecCCC-----CCc
Confidence            9999999999975 433333432  122222222    2334556777777788886333333344454321     122


Q ss_pred             EEEE-EeCC-CCccCCCCcEEEEEEE
Q 009226          400 IRVL-QLGG-NLAVCPLGMFVLYFSA  423 (539)
Q Consensus       400 v~v~-~~ss-~~~~cP~G~~vi~~st  423 (539)
                      +..+ ..+. ....+|+|..++..+.
T Consensus       327 ~~~~~~~s~~~~~~~p~g~~~~~~~~  352 (451)
T PRK11883        327 ITACTWTSKKWPHTTPEGKVLLRLYV  352 (451)
T ss_pred             EEEEEeEcCcCCCCCCCCcEEEEEec
Confidence            3332 2232 2456788988877765

>PRK07208 hypothetical protein; Provisional

Probab=99.89  E-value=2.5e-20  Score=202.01  Aligned_cols=353  Identities=14%  Similarity=0.162  Sum_probs=192.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      |+...||||||||++||+||..|+++|++|+|+|+++++||++.|...++                              
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------   50 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------   50 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence            35678999999999999999999999999999999999999999965432                              


Q ss_pred             ccccCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~  177 (539)
                               +.+|+ |++.++..+ .+.+++.+.+..+....... ..+++. +|+...+|.+..+.+.  .+++.++..
T Consensus        51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~  116 (479)
T PRK07208         51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK  116 (479)
T ss_pred             ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence                     34566 477776554 55666666665222211111 122332 7888888876434332  233333222


Q ss_pred             HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHhcccCCcchhhhhccchhHHHHH--
Q 009226          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGINRL--  254 (539)
Q Consensus       178 l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~i--  254 (539)
                      .+.  .......            .....+.++.+|+++..-.+..+.++. +..++  +..++  +++|+..++.++  
T Consensus       117 ~~~--~~~~~~~------------~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~~  178 (479)
T PRK07208        117 CGA--SYLKARL------------RPRKEEDSFEDWVINRFGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIKG  178 (479)
T ss_pred             HHH--HHHHHhc------------CCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCcccC
Confidence            111  1111110            001235899999996322223333332 22222  22222  335665433222  


Q ss_pred             -------HHHHHhh-h-------hccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe
Q 009226          255 -------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL  319 (539)
Q Consensus       255 -------~~~l~s~-g-------~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l  319 (539)
                             ...+... +       ..+.....+.||++|+++|+++|.+.++..|++|++|++|++|..+. ++.++++..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~  257 (479)
T PRK07208        179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV  257 (479)
T ss_pred             CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence                   1111111 0       00100123779999999999999999999999999999999998862 333444443


Q ss_pred             --CCCc--EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCC
Q 009226          320 --ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFP  394 (539)
Q Consensus       320 --~~G~--~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~  394 (539)
                        .+|+  ++.||+||++ |...+..++.   ++++..............+....+.++++.... . ..+.+|+.... 
T Consensus       258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~-~~~~~~~~~~~-  331 (479)
T PRK07208        258 NDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFP-D-NWIYIHDPDVK-  331 (479)
T ss_pred             EcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCC-C-ceEEecCCCCc-
Confidence              2454  5889999975 4332223221   122222222222333444555555567653211 1 22334432211 


Q ss_pred             CCCceEEEEEeCC-CCccCCCCc-EEEEEEEeeccc-----cchHHHHHHHHHHHHh
Q 009226          395 EQVTSIRVLQLGG-NLAVCPLGM-FVLYFSALCDEV-----NQGKKLLHAALSALQK  444 (539)
Q Consensus       395 ~~~~~v~v~~~ss-~~~~cP~G~-~vi~~st~~~~~-----~~~~~~l~~~~~~l~~  444 (539)
                          .-.+..++. +...+|+|+ ..+.+...+...     ..-++.++.+++.|..
T Consensus       332 ----~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~  384 (479)
T PRK07208        332 ----VGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELAR  384 (479)
T ss_pred             ----cceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHH
Confidence                012222332 245679987 344333322211     1234566666666655

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.88  E-value=1.3e-20  Score=197.65  Aligned_cols=346  Identities=16%  Similarity=0.183  Sum_probs=210.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      .|+|||||++||+||++|+++|  .+|+|||+.++.||..+|+..+|                                 
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G---------------------------------   48 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG---------------------------------   48 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC---------------------------------
Confidence            4899999999999999999999  99999999999999999986544                                 


Q ss_pred             cCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHH
Q 009226          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~k  180 (539)
                            |.+|. ||+.++.+ ...++++.+.|.++.+.+..-...|++. +|+++++|..-  ++.-+.+...++..+.+
T Consensus        49 ------~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~  118 (444)
T COG1232          49 ------FLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR  118 (444)
T ss_pred             ------EEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence                  55677 57776665 5788999999998887776655556665 89999999864  44433332212333333


Q ss_pred             HHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHH
Q 009226          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS  259 (539)
Q Consensus       181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~-~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~  259 (539)
                      ++.......           .+....+.++.+|+++ |+  +++.+-+.-.+.-.-|..+.  +.+|+..+...+.+-..
T Consensus       119 ~~~~~~~~~-----------~~~~~~d~sv~~f~r~~fG--~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~  183 (444)
T COG1232         119 ALQEFIRPK-----------SWEPKQDISVGEFIRRRFG--EEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAER  183 (444)
T ss_pred             HHHhhhccc-----------CCCCCCCcCHHHHHHHHHh--HHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhh
Confidence            333221110           0234567899999985 43  23332221111111122121  33566522222111111


Q ss_pred             hhhhc-------cC-----CCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEc
Q 009226          260 SIGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS  327 (539)
Q Consensus       260 s~g~~-------g~-----~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A  327 (539)
                      ..+..       +.     ..+.|.++++|++++++++.+.+...   |+++++|+.|..+  ... +++.+.+|+++.|
T Consensus       184 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~  257 (444)
T COG1232         184 KYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITA  257 (444)
T ss_pred             hhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEc
Confidence            11110       00     01347788999999999999877665   9999999999876  222 3455678999999


Q ss_pred             CEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCC-CCCCCCceEEEeCCCCCCCCCCceEEEEEe
Q 009226          328 HKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQL  405 (539)
Q Consensus       328 d~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~-l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~  405 (539)
                      |.||++ |.+.++.++.+  ......   + .......++.++..++.+ ....+++..+.+|....     . +.....
T Consensus       258 D~VI~t~p~~~l~~ll~~--~~~~~~---~-~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~-----~-~~a~~~  325 (444)
T COG1232         258 DGVISTAPLPELARLLGD--EAVSKA---A-KELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP-----Y-ILAITF  325 (444)
T ss_pred             ceEEEcCCHHHHHHHcCC--cchhhh---h-hhccccceEEEEEEeccccccCCCCceEEEEecCCC-----c-ceeEEE
Confidence            999975 55554554322  111111   1 112233466666667774 33344566777764331     1 333333


Q ss_pred             CCC--CccCCCCcEEEEEEEeecccc-----chHHHHHHHHHHHHhh
Q 009226          406 GGN--LAVCPLGMFVLYFSALCDEVN-----QGKKLLHAALSALQKL  445 (539)
Q Consensus       406 ss~--~~~cP~G~~vi~~st~~~~~~-----~~~~~l~~~~~~l~~~  445 (539)
                      .+.  ....|+|+.++++........     .-++.++.+++-|-+.
T Consensus       326 ~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~  372 (444)
T COG1232         326 HSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKL  372 (444)
T ss_pred             ecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHH
Confidence            333  467799999999987554321     1256666666666554

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.88  E-value=5.9e-20  Score=197.70  Aligned_cols=294  Identities=17%  Similarity=0.187  Sum_probs=178.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (539)
                      +|+|||+|++||+||..|+++|++|+|+|+++++||++.|+...                                    
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------   44 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------   44 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence            58999999999999999999999999999999999999986421                                    


Q ss_pred             CCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeE-ccCCcee--ecC---CCH---HHHHh-ccCCCh
Q 009226          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL  172 (539)
Q Consensus       104 ~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~-~~~g~l~--~vP---~s~---~~vf~-~~~ls~  172 (539)
                        ..+.+|. |++++... ..+.+++.+.|+...+.|......+.. ..++...  ..|   ...   .++++ ...++.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (453)
T TIGR02731        45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW  121 (453)
T ss_pred             --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence              1234566 47766443 357788888888766665543332221 1122222  122   211   12222 224555


Q ss_pred             hhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHH--HhcccCCcchhhhhccchh
Q 009226          173 MEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYA--IAMADYDQEVSEYVLKTRD  249 (539)
Q Consensus       173 ~ek~~l~k-fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~--i~l~~~~~~~~~~~~s~~~  249 (539)
                      .+|..+.. +.......          .+...++.+.|+.+|+++.+.++.+.+.+...  .++.  ..++  +++|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~--~~~p--~~~S~~~  187 (453)
T TIGR02731       122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN--FINP--DELSMTV  187 (453)
T ss_pred             HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC--CCCH--HHHHHHH
Confidence            55554332 11111000          01123456789999999999998877643322  2222  2232  3467777


Q ss_pred             HHHHHHHHHHhhhhccCCCccEEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc-----
Q 009226          250 GINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----  323 (539)
Q Consensus       250 ~l~~i~~~l~s~g~~g~~~ga~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~-----  323 (539)
                      ++..+..++.  ..+|.   ...+..+| ++.++++|.+.++..|++|++|++|++|..++ ++++++|++.+|+     
T Consensus       188 ~~~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~  261 (453)
T TIGR02731       188 VLTALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRF  261 (453)
T ss_pred             HHHHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCcee
Confidence            7666655442  22231   12345555 47899999999999999999999999998652 6667888887766     


Q ss_pred             EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226          324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (539)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~  378 (539)
                      ++.||.||++ |...+..++ +...+-....+.+. ......+.+..+.+++++..
T Consensus       262 ~~~a~~VI~a~p~~~~~~lL-~~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~  315 (453)
T TIGR02731       262 EVTADAYVSAMPVDIFKLLL-PQPWKQMPFFQKLN-GLEGVPVINVHIWFDRKLTT  315 (453)
T ss_pred             EEECCEEEEcCCHHHHHhhC-chhhhcCHHHHHhh-cCCCCcEEEEEEEEccccCC
Confidence            7999999964 433334443 21110011112221 11244677888889998753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02612 phytoene desaturase

Probab=99.87  E-value=1.3e-19  Score=199.45  Aligned_cols=293  Identities=14%  Similarity=0.155  Sum_probs=181.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      ..||+|||+|++||+||.+|+++|++|+++|+++++||++.++...                                  
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~----------------------------------  138 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE----------------------------------  138 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence            4789999999999999999999999999999999999999997531                                  


Q ss_pred             cCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEc-cCCcee--e----cCCC---HHHHHh-ccC
Q 009226          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS  169 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~-~~g~l~--~----vP~s---~~~vf~-~~~  169 (539)
                          .++.+|. |+++++... .+.++|.+.|+...++|......+... .++...  .    .|..   ..++++ ...
T Consensus       139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~  213 (567)
T PLN02612        139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM  213 (567)
T ss_pred             ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence                1234566 477765433 577888888887776665543333221 122222  1    2222   112332 234


Q ss_pred             CChhhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHHHH-hcccCCcchhhhhcc
Q 009226          170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLYAI-AMADYDQEVSEYVLK  246 (539)
Q Consensus       170 ls~~ek~~l~k-fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~-~l~~~i-~l~~~~~~~~~~~~s  246 (539)
                      +++.+|..+.. ++...   ..       ......++.+.|+.+|+++.+.++.+.+ ++...+ ++.  ..++  +++|
T Consensus       214 ls~~~kl~~~~~~~~~~---~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~--~~~p--~~~S  279 (567)
T PLN02612        214 LTWPEKIKFAIGLLPAI---VG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALN--FINP--DELS  279 (567)
T ss_pred             CCHHHHHHHHHhhhHHh---cc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhc--CCCH--HHhh
Confidence            45555443221 11100   00       0011234557899999999999987765 332211 221  2222  3356


Q ss_pred             chhHHHHHHHHHHhhhhccCCCccEEeecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEE
Q 009226          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI  325 (539)
Q Consensus       247 ~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i  325 (539)
                      +...+..+..++..  +.|   ....++.|+. ..|+++|.+.++..||+|++|++|++|..++ ++++++|++.+|+++
T Consensus       280 ~~~~l~~l~~~l~~--~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~  353 (567)
T PLN02612        280 MQCILIALNRFLQE--KHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTNGSVV  353 (567)
T ss_pred             HHHHHHHHHHHHhc--cCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECCCcEE
Confidence            66666555544331  222   1245676664 5789999998888999999999999998853 666778888899999


Q ss_pred             EcCEEEEC-CCCCCCCCCcccc--hhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          326 LSHKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       326 ~Ad~VI~~-p~~~~~~l~~~~~--~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      .||+||++ |...+..++....  .+++...+.+    ....+.+..+.+++|+.
T Consensus       354 ~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l----~~~~v~~v~l~~dr~~~  404 (567)
T PLN02612        354 EGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKL----VGVPVINVHIWFDRKLK  404 (567)
T ss_pred             ECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhc----CCCCeEEEEEEECcccC
Confidence            99999975 4433333321111  1223233222    23456777777899874

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.84  E-value=5.6e-19  Score=190.63  Aligned_cols=268  Identities=17%  Similarity=0.184  Sum_probs=170.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (539)
                      +|+|||+|++||++|..|+++|++|+|+|+++++||+++++...                                    
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------   44 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------   44 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence            58999999999999999999999999999999999999996321                                    


Q ss_pred             CCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCcee--------ecC-CCHHHHHhccCCChh
Q 009226          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLC--------SVP-DSRAAIFKDKSLGLM  173 (539)
Q Consensus       104 ~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~--------~vP-~s~~~vf~~~~ls~~  173 (539)
                        .+|.+|. |+++++... .+.+++.+.|+...+.+......|.. .++++.        ..| .....+++.+.+++.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~  120 (474)
T TIGR02732        45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV  120 (474)
T ss_pred             --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence              2345666 588776544 56777777887655444432222221 133322        123 233467777888888


Q ss_pred             hHHHHHHHHHH---HHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhH
Q 009226          174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (539)
Q Consensus       174 ek~~l~kfl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~  250 (539)
                      +|..+.+.+..   ...... ..   .....+....+.|+.+|+++++.++.+.+-+...+....+..++  +++|+..+
T Consensus       121 dklr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~  194 (474)
T TIGR02732       121 DKLRNALALGTSPIVRGLVD-YD---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM  194 (474)
T ss_pred             HHHHHHHHhhhhHHHhhccc-cc---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence            88876553311   111100 00   00011223456999999999988876443333222222122222  34677776


Q ss_pred             HHHHHHHHHhhhhccCCCccEEeecCCcCh-HHHHHHHHHHHCCcEEEeCCcceEEEEecC-CC--cEEEEEeCCC---c
Q 009226          251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q  323 (539)
Q Consensus       251 l~~i~~~l~s~g~~g~~~ga~lyp~gG~ge-L~qal~r~~a~~Gg~i~L~~~V~~I~~~~~-~g--~~~gV~l~~G---~  323 (539)
                      +..++.+.  .++.+   .-+.++++|.++ +.+.+.+.++..||+|+++++|++|..+.. ++  ++++|++.+|   +
T Consensus       195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~  269 (474)
T TIGR02732       195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK  269 (474)
T ss_pred             HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence            66555333  22333   126789999876 778899999999999999999999987621 12  3677777544   5


Q ss_pred             EEEcCEEEEC-CCCCCCCCC
Q 009226          324 DILSHKLVLD-PSFTVPGSL  342 (539)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~l~  342 (539)
                      ++.||+||++ |.+....|+
T Consensus       270 ~~~aD~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       270 VIKADAYVAACDVPGIKRLL  289 (474)
T ss_pred             EEECCEEEECCChHHHHhhC
Confidence            6899999974 544444543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=99.83  E-value=1.9e-18  Score=188.58  Aligned_cols=270  Identities=17%  Similarity=0.206  Sum_probs=170.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      +..+|+|||+|++||++|..|+++|++|+++|+++++||++.++...                                 
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~---------------------------------  120 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK---------------------------------  120 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence            34699999999999999999999999999999999999999997421                                 


Q ss_pred             ccCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCcee----ecC--CC---HHHHHhccCC
Q 009226          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL  170 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~----~vP--~s---~~~vf~~~~l  170 (539)
                           ..+.+|. |+++++.. ..+.++|.+.|+...+.+..-...|. ..+|.+.    ++|  ..   ...+++...+
T Consensus       121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L  193 (569)
T PLN02487        121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL  193 (569)
T ss_pred             -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence                 1244566 57776543 36788888888876555443222222 2244442    122  21   1255566778


Q ss_pred             ChhhHHHHHHHH--H-HHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccc
Q 009226          171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (539)
Q Consensus       171 s~~ek~~l~kfl--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~  247 (539)
                      ++.+|..+..-+  . .+.....  ..  .....+....+.|+.+|+++++.++.+.+-++..+....+..+.  +++|+
T Consensus       194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA  267 (569)
T PLN02487        194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA  267 (569)
T ss_pred             CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence            877777653211  1 0111000  00  00011223456899999999888774443333322222222222  44677


Q ss_pred             hhHHHHHHHHHHhhhhccCCCccEEeecCCcCh-HHHHHHHHHHHCCcEEEeCCcceEEEEecC-CC--cEEEEEe---C
Q 009226          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A  320 (539)
Q Consensus       248 ~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~ge-L~qal~r~~a~~Gg~i~L~~~V~~I~~~~~-~g--~~~gV~l---~  320 (539)
                      ..++..+..+.  .+. .  .+-+.||+||.++ |++.+++.++..||+|+++++|++|..+.+ +|  ++++|++   .
T Consensus       268 ~~~~~vl~~~~--~~~-~--~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~  342 (569)
T PLN02487        268 RCMLTIFSLFA--TKT-E--ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT  342 (569)
T ss_pred             HHHHHHHHHHh--hcC-C--cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence            76666553321  111 1  1226799999985 999999999999999999999999998731 22  3788887   3


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCC
Q 009226          321 SGQDILSHKLVLD-PSFTVPGS  341 (539)
Q Consensus       321 ~G~~i~Ad~VI~~-p~~~~~~l  341 (539)
                      +++++.||.||++ |.+.+..|
T Consensus       343 ~~~~~~aD~VV~A~p~~~~~~L  364 (569)
T PLN02487        343 EKEIVKADAYVAACDVPGIKRL  364 (569)
T ss_pred             CceEEECCEEEECCCHHHHHHh
Confidence            4557899999975 43343444

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.83  E-value=1.3e-19  Score=183.70  Aligned_cols=151  Identities=24%  Similarity=0.251  Sum_probs=96.1

Q ss_pred             cEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC--CCCCCCCcccch
Q 009226          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSLASSHQ  347 (539)
Q Consensus       270 a~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~--~~~~~l~~~~~~  347 (539)
                      ++.||.||||+++.++++.+..+|++|.+++.|++|..+  +|+++||+++||++++++.||+|.+  .++.+|+ + ..
T Consensus       255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl-p-~e  330 (561)
T KOG4254|consen  255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL-P-GE  330 (561)
T ss_pred             cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC-C-Cc
Confidence            477999999999999999999999999999999999998  7999999999999999999998754  3444543 2 22


Q ss_pred             hhhhhh--hhcccCCCcceEEEE-EEEe--cCCCCCCCCc-eEE--------------EeCCCCCCCCCCceEEEEEeCC
Q 009226          348 QLQESF--QAFSLSDNKGKVARG-ICIT--RSSLKPDLSN-FLV--------------IFPPRSLFPEQVTSIRVLQLGG  407 (539)
Q Consensus       348 ~l~~~~--~~l~~~~~~~~vsr~-i~I~--~~~l~~~~~~-~~~--------------~~p~~~~~~~~~~~v~v~~~ss  407 (539)
                      .+|++.  +++.......+ .++ .++.  ..+-.|-++. .-+              .-|...+. ...+.|++...|+
T Consensus       331 ~LPeef~i~q~d~~spv~k-~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~-s~~pvI~~siPS~  408 (561)
T KOG4254|consen  331 ALPEEFVIQQLDTVSPVTK-DKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLA-SHRPVIELSIPSS  408 (561)
T ss_pred             cCCchhhhhhccccccccc-ccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhccc-ccCCeEEEecccc
Confidence            355543  12211111000 011 1111  1110111111 111              11111111 1245688888776


Q ss_pred             CC-ccCCCCcEEEEEEEeec
Q 009226          408 NL-AVCPLGMFVLYFSALCD  426 (539)
Q Consensus       408 ~~-~~cP~G~~vi~~st~~~  426 (539)
                      -+ ..+|+|+.||++-+...
T Consensus       409 lDptlappg~Hvl~lf~~~t  428 (561)
T KOG4254|consen  409 LDPTLAPPGKHVLHLFTQYT  428 (561)
T ss_pred             cCCCcCCCCceEEEEeccCC
Confidence            64 78999999999988654

>PLN02268 probable polyamine oxidase

Probab=99.79  E-value=3.5e-18  Score=182.91  Aligned_cols=273  Identities=14%  Similarity=0.151  Sum_probs=156.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      .+|||||||++||+||..|.++|++|+|||+++++||++.|....                                   
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~-----------------------------------   45 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF-----------------------------------   45 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC-----------------------------------
Confidence            379999999999999999999999999999999999999985432                                   


Q ss_pred             CCCCCeEEecCCCEEEec---ChHHHHHHhcCCcccccccccccceeeEcc--------CCceeecCCCHHHHHhccCCC
Q 009226          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDA--------DAKLCSVPDSRAAIFKDKSLG  171 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~~---~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~--------~g~l~~vP~s~~~vf~~~~ls  171 (539)
                          .+.+|+ |++++..   ..++.+++.+.|+..+..  ..+..+++..        ++....+|.+....       
T Consensus        46 ----g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  111 (435)
T PLN02268         46 ----GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQELVTK-------  111 (435)
T ss_pred             ----CcccCC-CCeeEeccCCCchHHHHHHHhCCceEec--cCCccccccccccccceecCCCCCCCHHHHHH-------
Confidence                234577 5888753   235777888888754321  0111111110        11111222110000       


Q ss_pred             hhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC-CCh------hHHHHHHHHHh-cc-cCCcchhh
Q 009226          172 LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPH------KIKSIVLYAIA-MA-DYDQEVSE  242 (539)
Q Consensus       172 ~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~-l~~------~l~~~l~~~i~-l~-~~~~~~~~  242 (539)
                        -+..+.+++..+....            .....+.|+.+|++++. ..+      ..++++.+.+. +. -+..++  
T Consensus       112 --~~~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  175 (435)
T PLN02268        112 --VGETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--  175 (435)
T ss_pred             --HHHHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--
Confidence              0111122222221110            01234678888876532 111      22333321110 00 012222  


Q ss_pred             hhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC
Q 009226          243 YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (539)
Q Consensus       243 ~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G  322 (539)
                      +++|+...       .. ...+.   |.-.+..+|++.|+++|++     |..|++|++|++|..+  ++. +.|++.+|
T Consensus       176 ~~ls~~~~-------~~-~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g  236 (435)
T PLN02268        176 DTISLKSW-------DQ-EELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDG  236 (435)
T ss_pred             HhCchhhc-------CC-ccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCC
Confidence            22333210       00 00010   1123677899999998754     5579999999999876  333 46777889


Q ss_pred             cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009226          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (539)
Q Consensus       323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~  379 (539)
                      +++.||+||+. |...+......+.|++|+.+....++..++.+.|.++.+++++-+.
T Consensus       237 ~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~  294 (435)
T PLN02268        237 TTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN  294 (435)
T ss_pred             cEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence            89999999964 5444333223456778776665555566788999999999986443

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.79  E-value=5.2e-17  Score=172.37  Aligned_cols=276  Identities=16%  Similarity=0.154  Sum_probs=167.1

Q ss_pred             HHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCCCCCeEEecCCC
Q 009226           36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP  115 (539)
Q Consensus        36 ~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ldl~Gp  115 (539)
                      +||..|+++|++|+|||+++++||++.|++.++.                                     .+.+|+ |+
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~   42 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ   42 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence            4899999999999999999999999999876431                                     123566 58


Q ss_pred             EEEecC-hHHHHHHhcCCcccccccccccceeeEccCCce-------eecCCC-HHHHHhccCCChhhHHHHHHHHHHHH
Q 009226          116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-------CSVPDS-RAAIFKDKSLGLMEKNQLMRFFKLVQ  186 (539)
Q Consensus       116 ~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l-------~~vP~s-~~~vf~~~~ls~~ek~~l~kfl~~~~  186 (539)
                      +.++.. ..+.+++.+.|+.....+. .....++..++..       .+.|.. ...+.+.+.+++.+|..+.+++..+.
T Consensus        43 ~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  121 (419)
T TIGR03467        43 HVLLGAYTNLLALLRRIGAEPRLQGP-RLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR  121 (419)
T ss_pred             EEEEcccHHHHHHHHHhCCchhhhcc-cCCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            877654 3677888888887665542 1122222223331       112221 12334456677888877776654433


Q ss_pred             hhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccC
Q 009226          187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN  266 (539)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~  266 (539)
                      ...            ..++.+.|+.+||++++.++.+.+.+...+....+..++  +++|+..++..+..   .+.....
T Consensus       122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~  184 (419)
T TIGR03467       122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA  184 (419)
T ss_pred             hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence            211            123457899999999888877776544322222122232  33555554443322   1211111


Q ss_pred             CCccEEeecCCcChHH-HHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcc
Q 009226          267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS  344 (539)
Q Consensus       267 ~~ga~lyp~gG~geL~-qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~  344 (539)
                       ...+.||++|++++. ++|.+.++..|++|++|++|++|..+  ++++..+...+|+++.||+||++ |...+..++ +
T Consensus       185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-~  260 (419)
T TIGR03467       185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-P  260 (419)
T ss_pred             -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC-C
Confidence             112789999988766 55888888889999999999999886  44433222257888999999975 444434442 2


Q ss_pred             cchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       345 ~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                       ++...+   .+ +...+..+.+..+.+++|+
T Consensus       261 -~~~~~~---~l-~~~~~~~~~~v~l~~~~~~  287 (419)
T TIGR03467       261 -GEDLGA---LL-TALGYSPITTVHLRLDRAV  287 (419)
T ss_pred             -CchHHH---HH-hhcCCcceEEEEEEeCCCc
Confidence             112221   22 2224455666777788887

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02676 polyamine oxidase

Probab=99.77  E-value=3.3e-17  Score=177.23  Aligned_cols=286  Identities=11%  Similarity=0.084  Sum_probs=160.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      +..+||||||||++||+||..|++.|. +|+|||+++++||++.+...++                              
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g------------------------------   73 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG------------------------------   73 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC------------------------------
Confidence            356899999999999999999999998 6999999999999999865432                              


Q ss_pred             ccccCCCCCeEEecCCCEEEec-----ChHHHHHHhcCCccccc-ccccccceeeEccCCceeecCCCHHHHHhccCCCh
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~-----~~~lv~~L~~s~~~~y~-ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~  172 (539)
                               +.+|+ |++++..     ...+.+++.+.|+..+. .+... ...++..+|+..  |.   +...      
T Consensus        74 ---------~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~------  131 (487)
T PLN02676         74 ---------VSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ------  131 (487)
T ss_pred             ---------eEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH------
Confidence                     34566 4676632     34567777777776542 12221 222333355433  21   1100      


Q ss_pred             hhHHHHHHHHHHHHhhcccCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHhcccCCcchhhhhccchh
Q 009226          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (539)
Q Consensus       173 ~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~efL~~~~-l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~  249 (539)
                      .-...+.++..++.......    .    ..++.+.++  .+++.+.. ..+.... ..+......+..++  ..+|..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~  200 (487)
T PLN02676        132 KSMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKN  200 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhh
Confidence            00011111112111111000    0    012334444  33343322 2221111 11111100011111  1233322


Q ss_pred             HHHHHHHHHHhhhhccCCCccEEee-cCCcChHHHHHHHHHHH------CCcEEEeCCcceEEEEecCCCcEEEEEeCCC
Q 009226          250 GINRLALYNSSIGRFQNALGALIYP-IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (539)
Q Consensus       250 ~l~~i~~~l~s~g~~g~~~ga~lyp-~gG~geL~qal~r~~a~------~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G  322 (539)
                      .+.     ......+|.  ..+... ++|++.|+++|++....      .++.|+||++|++|..+  ++. +.|++.+|
T Consensus       201 ~~~-----~~~~~~~g~--~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~G  270 (487)
T PLN02676        201 TEP-----NPTFVDFGE--DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTEDG  270 (487)
T ss_pred             cCc-----ccccccCCC--ceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECCC
Confidence            110     001111221  113222 68999999998875422      24689999999999876  333 46888899


Q ss_pred             cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (539)
Q Consensus       323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~  378 (539)
                      ++++||+||+. |...+....+.+.|+||+.+....++..++.+.|.++.+++||=+
T Consensus       271 ~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~  327 (487)
T PLN02676        271 SVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP  327 (487)
T ss_pred             CEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence            99999999975 444434312367889998777666667788999999999999643

>PLN02529 lysine-specific histone demethylase 1

Probab=99.77  E-value=2.6e-16  Score=175.30  Aligned_cols=279  Identities=14%  Similarity=0.107  Sum_probs=164.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      ...||+|||||++||+||..|+++|++|++||+++++||+..|..+.+                                
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~--------------------------------  206 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR--------------------------------  206 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence            467999999999999999999999999999999999999999976421                                


Q ss_pred             ccCCCCCeEEecCCCEEEecCh--HHHHHHhcCCcccccccccccce-eeEccCCceeecCCCHHHHHhccCCChhhHHH
Q 009226          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~~~--~lv~~L~~s~~~~y~ef~~v~~~-~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~  177 (539)
                         ....+.+|+ |+++++...  ++..+..+.++.-+    .++.. .++..+|...  +.....     .+   + ..
T Consensus       207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v--~~~~~~-----~~---~-~~  267 (738)
T PLN02529        207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLH----KVRDNCPLYKPDGALV--DKEIDS-----NI---E-FI  267 (738)
T ss_pred             ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCc--chhhhh-----hH---H-HH
Confidence               011245687 588885543  45555555554322    11111 1333455432  111100     00   0 01


Q ss_pred             HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHhcccCCcchhhhhccchhHH
Q 009226          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI  251 (539)
Q Consensus       178 l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~------l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l  251 (539)
                      +.+++..+........         ....+.|+.+|++++.      +++.-+.++.+.++...+....   .++.    
T Consensus       268 ~~~~l~~~~~l~~~~~---------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~---~~s~----  331 (738)
T PLN02529        268 FNKLLDKVTELRQIMG---------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAG---CLSD----  331 (738)
T ss_pred             HHHHHHHHHHHHHhcc---------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCC---ChHH----
Confidence            2222222222111000         1234678999997543      5555555554332211111110   0111    


Q ss_pred             HHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009226          252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (539)
Q Consensus       252 ~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (539)
                      ..+..+....+ +.. .|...+..||++.|+++|++     +..|+||++|++|..+  ++. +.|+ .+++++.||+||
T Consensus       332 LSl~~~~~~~~-~e~-~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VI  400 (738)
T PLN02529        332 LSAAYWDQDDP-YEM-GGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVL  400 (738)
T ss_pred             hhhhHhhhccc-ccc-CCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEE
Confidence            11122222111 111 13356789999999998875     3359999999999886  333 4565 466789999999


Q ss_pred             EC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       332 ~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      ++ |...+....+.+.|+||+.+....++..++.+.+.++.++++|=
T Consensus       401 VTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW  447 (738)
T PLN02529        401 CTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW  447 (738)
T ss_pred             ECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence            75 44333322234678888877766677788899999999999953

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.74  E-value=1.5e-15  Score=169.91  Aligned_cols=280  Identities=13%  Similarity=0.110  Sum_probs=162.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      ...||+|||||++||+||..|++.|++|+|+|+++++||+..++.+.+.                               
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~-------------------------------  285 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD-------------------------------  285 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence            4579999999999999999999999999999999999999999876531                               


Q ss_pred             ccCCCCCeEEecCCCEEEecC--hHHHHHHhcCCcccccccccccceeeEccCCceee--cCCCHHHHHhccCCChhhHH
Q 009226          101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--VPDSRAAIFKDKSLGLMEKN  176 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~~--~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~--vP~s~~~vf~~~~ls~~ek~  176 (539)
                          .-.+.+|+ |++++...  ..+..++...|+..+. .....+  ++..+|+...  ++...            + .
T Consensus       286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~~~--~~~~dG~~~~~~~~~~v------------~-~  344 (808)
T PLN02328        286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDICP--LYLPDGKAVDAEIDSKI------------E-A  344 (808)
T ss_pred             ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCCce--EEeCCCcCcchhhhhhH------------H-H
Confidence                01234567 57777543  2466666677764321 111111  2233555331  11110            1 1


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhcccCCcchhhhhccchhH
Q 009226          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (539)
Q Consensus       177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~------~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~  250 (539)
                      .+.+++..+.++.....   .    .....+.++.+|++++      ..++..+.++...++...+....      ....
T Consensus       345 ~f~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs------~ls~  411 (808)
T PLN02328        345 SFNKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS------LMSN  411 (808)
T ss_pred             HHHHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh------hHHH
Confidence            22333333222211000   0    0112457888888743      23444444333222211111100      0011


Q ss_pred             HHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 009226          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (539)
Q Consensus       251 l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~V  330 (539)
                      +. +..+.... .+ ...|.+.+..||++.|+++|++.+   +  |++|++|++|..+  ++. +.| +.+|+++.||+|
T Consensus       412 LS-l~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~V  479 (808)
T PLN02328        412 LS-MAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMV  479 (808)
T ss_pred             HH-hhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEE
Confidence            11 11111110 01 111335677899999999997643   3  9999999999886  333 344 457889999999


Q ss_pred             EEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       331 I~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      |++ |...+....+.+.|+||+.+....++..++.+.|.++.+++++=
T Consensus       480 IvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW  527 (808)
T PLN02328        480 LCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW  527 (808)
T ss_pred             EECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence            975 44443322234677888877665567778899999999999853

>PLN02568 polyamine oxidase

Probab=99.74  E-value=2.2e-16  Score=172.20  Aligned_cols=103  Identities=11%  Similarity=-0.002  Sum_probs=78.3

Q ss_pred             ccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCC----c
Q 009226          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----A  343 (539)
Q Consensus       269 ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~----~  343 (539)
                      |.++...+|++.|+++|++.+  .++.|++|++|++|..+  ++. +.|++++|+++.||+||++ |...+..-.    .
T Consensus       232 g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i  306 (539)
T PLN02568        232 GEEITIAKGYLSVIEALASVL--PPGTIQLGRKVTRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSG  306 (539)
T ss_pred             CCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEEEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccc
Confidence            446788999999999987754  36789999999999876  333 4677889999999999975 443333210    2


Q ss_pred             ccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          344 SSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       344 ~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                      .++|+||+.+....++..++.+.|.++.+++++
T Consensus       307 ~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f  339 (539)
T PLN02568        307 LFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP  339 (539)
T ss_pred             eecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence            477889887766556777889999999999985

>PLN03000 amine oxidase

Probab=99.72  E-value=3.8e-15  Score=166.80  Aligned_cols=280  Identities=13%  Similarity=0.098  Sum_probs=158.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      ...||+|||||++||.||..|++.|++|+|+|+++++||++.|..+++                                
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g--------------------------------  230 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA--------------------------------  230 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence            468999999999999999999999999999999999999999987543                                


Q ss_pred             ccCCCCCeEEecCCCEEEecCh--HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~~~--~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                         ....+.+|+ |++++....  .+..++.+.|+..+ .+..-.+  ++..+|+..  |.+....+         ...+
T Consensus       231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~--ly~~~Gk~v--~~~~~~~v---------e~~f  292 (881)
T PLN03000        231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCP--LYRVDGKPV--DPDVDLKV---------EVAF  292 (881)
T ss_pred             ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCe--EEEeCCcCC--chhhhhhH---------HHHH
Confidence               012356788 588886543  45555666776532 2222222  223366543  32211000         0111


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHhcccCCcchhhhhccchhHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~------~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~  252 (539)
                      .+++..+.++.....         ....+.++.++++.      ..+.+..+.++...++...+...      +....+.
T Consensus       293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~a------s~ls~LS  357 (881)
T PLN03000        293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANA------GLVSKLS  357 (881)
T ss_pred             HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccc------cCHHHHH
Confidence            222222211110000         00113344443331      12233223332221111111100      0001111


Q ss_pred             HHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       253 ~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                       +..+.... .+.. .|.+....||++.|+++|++.+     .|+|+++|++|..+  ++. +.|++ +++++.||+||+
T Consensus       358 -l~~wdqd~-~~e~-~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv  425 (881)
T PLN03000        358 -LAFWDQDD-PYDM-GGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC  425 (881)
T ss_pred             -HHHhhhcc-cccC-CCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence             11111111 1111 1235567899999999998644     39999999999876  333 45654 456899999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      + |...+....+.+.|+||+.+....++..++.+.|.++.++++|=
T Consensus       426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW  471 (881)
T PLN03000        426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFW  471 (881)
T ss_pred             cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence            5 54444421235788999887766677788999999999999854

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.71  E-value=8e-17  Score=165.77  Aligned_cols=99  Identities=14%  Similarity=0.145  Sum_probs=76.2

Q ss_pred             EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 009226          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (539)
Q Consensus       271 ~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l  349 (539)
                      .+.+.|||+.|++||+   .++|..|.++++|.+|.+++ +|  +.|+..+.+++.+|.+|+. |...+..  +.++|.+
T Consensus       201 ~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l  272 (450)
T COG1231         201 MLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLL  272 (450)
T ss_pred             hhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhh--cccCCCC
Confidence            4567799999999986   47899999999999999872 33  5677666578999999976 4333333  3567777


Q ss_pred             hhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          350 QESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       350 ~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      ++.+++..+...++...|..+-+++||=
T Consensus       273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFW  300 (450)
T COG1231         273 PAEYKQAAKGVPYGSATKIGVAFSRPFW  300 (450)
T ss_pred             CHHHHHHhcCcCcchheeeeeecCchhh
Confidence            7777777677888888898888999973

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.65  E-value=2.1e-14  Score=154.51  Aligned_cols=243  Identities=13%  Similarity=0.201  Sum_probs=146.7

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccc
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE   92 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (539)
                      +-++...+|+|||||++||+||++|++.    |++|+|||+++++||++.++....                        
T Consensus        17 ~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------------   72 (576)
T PRK13977         17 PEGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------------   72 (576)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc------------------------
Confidence            3445567999999999999999999996    689999999999999998864321                        


Q ss_pred             ccccccccccCCCCCeEEecCCCEEEecChHHHHHHhcC------C---ccccccccccccee----eEccCCceeecCC
Q 009226           93 ISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF----MLDADAKLCSVPD  159 (539)
Q Consensus        93 ~~~~~~~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s------~---~~~y~ef~~v~~~~----~~~~~g~l~~vP~  159 (539)
                                   .+|.++. ||.+...-..+.++|.+.      |   .++|..|...++.+    +...+|....   
T Consensus        73 -------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d---  135 (576)
T PRK13977         73 -------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD---  135 (576)
T ss_pred             -------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE---
Confidence                         1233343 344322222444444222      1   23455555554442    1111222222   


Q ss_pred             CHHHHHhccCCCh--hhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCC
Q 009226          160 SRAAIFKDKSLGL--MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD  237 (539)
Q Consensus       160 s~~~vf~~~~ls~--~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~  237 (539)
                             ...+.+  +.+..|++++-   ..             .++..+.++.||+++..+....-.   +...+..+.
T Consensus       136 -------~~~~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~---~w~t~FaF~  189 (576)
T PRK13977        136 -------TDKFGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWY---YWRTMFAFE  189 (576)
T ss_pred             -------CcCCCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHH---HHHHHHCCc
Confidence                   222333  33333444322   11             123456889999987444433222   222222222


Q ss_pred             cchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCC--CcE
Q 009226          238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSY  314 (539)
Q Consensus       238 ~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~--g~~  314 (539)
                           +..|+.+....+.+|+.-+.+.+... ++.+.+|- .-.|.+.|.+.++..|+++++|++|++|..+.++  +++
T Consensus       190 -----~whSA~E~rry~~rf~~~~~~l~~~s-~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~V  263 (576)
T PRK13977        190 -----KWHSALEMRRYMHRFIHHIGGLPDLS-GLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTA  263 (576)
T ss_pred             -----hhhHHHHHHHHHHHHHHhhccCCccc-cccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEE
Confidence                 23578887777878876665554432 24566665 3589999999999999999999999999874223  668


Q ss_pred             EEEEeC-CCc--E---EEcCEEEE
Q 009226          315 KGVRLA-SGQ--D---ILSHKLVL  332 (539)
Q Consensus       315 ~gV~l~-~G~--~---i~Ad~VI~  332 (539)
                      ++|.+. +|+  +   ..+|.||+
T Consensus       264 tgI~~~~~~~~~~I~l~~~DlViv  287 (576)
T PRK13977        264 TAIHLTRNGKEETIDLTEDDLVFV  287 (576)
T ss_pred             EEEEEEeCCceeEEEecCCCEEEE
Confidence            888774 332  2   35777874

>PLN02976 amine oxidase

Probab=99.59  E-value=9.5e-14  Score=159.63  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=77.2

Q ss_pred             ccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecC-------CCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 009226          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPG  340 (539)
Q Consensus       269 ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~-------~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~  340 (539)
                      |......+|++.|+++|++.+     .|+||++|++|.....       ++.-+.|.+.+|+++.||+||++ |...+..
T Consensus       926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976        926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred             CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence            345678999999999987643     3999999999987310       12225677889999999999975 4333332


Q ss_pred             CCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226          341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (539)
Q Consensus       341 l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~  378 (539)
                      -.+.+.|+||+.+....++..++.+.|.++.+++||-+
T Consensus      1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976       1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred             cccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence            11358889998776655677788999999999998643

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=2.5e-14  Score=153.75  Aligned_cols=111  Identities=16%  Similarity=0.092  Sum_probs=78.0

Q ss_pred             EeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhh
Q 009226          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQ  350 (539)
Q Consensus       272 lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~  350 (539)
                      ....+|...+.++++.     |..|+++..|.+|.... ++. +.|+..++..+.+|+||+. |-..+..-.+.+.|+||
T Consensus       212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp  284 (501)
T KOG0029|consen  212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP  284 (501)
T ss_pred             hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence            4557888888887654     99999999999999873 443 3455566666999998853 43333331246888999


Q ss_pred             hhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCC
Q 009226          351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP  389 (539)
Q Consensus       351 ~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~  389 (539)
                      ..++...++...+.+.+.++.+++.+=..........|+
T Consensus       285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~  323 (501)
T KOG0029|consen  285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE  323 (501)
T ss_pred             HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence            988877777778889999999998854322234445543

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.56  E-value=1.9e-12  Score=131.56  Aligned_cols=245  Identities=18%  Similarity=0.228  Sum_probs=147.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEE--EeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVL--HLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~Vl--vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      ..+|+|+|||++||++|++|+|.+-+|.  ++|+.+|+||-.+|-..+                                
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~--------------------------------   58 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ--------------------------------   58 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence            4689999999999999999999998764  499999999999992211                                


Q ss_pred             cccCCCCCeEEecCCCEEEecCh----HHHHHHhcCCcccccc-ccccc----ceeeEccCCceeecCCCHHH-HHhccC
Q 009226          100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLE-FKSID----ATFMLDADAKLCSVPDSRAA-IFKDKS  169 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~~~----~lv~~L~~s~~~~y~e-f~~v~----~~~~~~~~g~l~~vP~s~~~-vf~~~~  169 (539)
                            +.|-++. ||.-+--.+    ...+++.++|.++-+. +..-.    .+|++ +.|++..+|.+... +|.  .
T Consensus        59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~--~  128 (491)
T KOG1276|consen   59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF--S  128 (491)
T ss_pred             ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc--c
Confidence                  1222233 344432223    3667777788764332 22111    13444 48899999987654 222  1


Q ss_pred             CChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcccCCcchhhhhccch
Q 009226          170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (539)
Q Consensus       170 ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~-~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~  248 (539)
                      +.+.-|..+..|+....+...           ...-.|.++.+|.++ |+  +++-+.+..++.-+.|..|+  .++|.+
T Consensus       129 l~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk  193 (491)
T KOG1276|consen  129 LQPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMK  193 (491)
T ss_pred             cCcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHH
Confidence            223344444444442211100           123456899999985 66  56666655554445566665  457777


Q ss_pred             hHHHHHHHHHHhhh---------hccC--------------C--CccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcce
Q 009226          249 DGINRLALYNSSIG---------RFQN--------------A--LGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI  303 (539)
Q Consensus       249 ~~l~~i~~~l~s~g---------~~g~--------------~--~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~  303 (539)
                      ..+..+..--...|         .++.              .  .-+.+-.+||...++++|++.....+..|.++-++.
T Consensus       194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~  273 (491)
T KOG1276|consen  194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS  273 (491)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence            66655543222221         0100              0  001234578899999999999888888889999998


Q ss_pred             EEEEecCCCcEEEEEeCCCc
Q 009226          304 SLLTDQNSGSYKGVRLASGQ  323 (539)
Q Consensus       304 ~I~~~~~~g~~~gV~l~~G~  323 (539)
                      .+.....++...+.+..+++
T Consensus       274 ~~sk~~~~~~~~tl~~~~~~  293 (491)
T KOG1276|consen  274 GNSKSRSGNWSLTLVDHSGT  293 (491)
T ss_pred             cccccccCCceeEeEcCCCc
Confidence            88654323333344444554

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.55  E-value=4.9e-14  Score=148.82  Aligned_cols=157  Identities=16%  Similarity=0.120  Sum_probs=88.7

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhc
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF  356 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l  356 (539)
                      .|.+.+.+...+...|++|++|++|++|..+  ++++ .|.+.+|+++.||+||++ |...+.+  ..+.+++|......
T Consensus       208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a  282 (450)
T PF01593_consen  208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA  282 (450)
T ss_dssp             TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred             ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence            4444455556667788999999999999987  5554 677899999999999975 4333232  13445566533332


Q ss_pred             ccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEE-eec---cccch
Q 009226          357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA-LCD---EVNQG  431 (539)
Q Consensus       357 ~~~~~~~~vsr~i~I~~~~l~~~~-~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st-~~~---~~~~~  431 (539)
                      .+......+.+.++.++.++.+.. ....++.++. .    ....++...+...+. +.+..+..... ...   .....
T Consensus       283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~  356 (450)
T PF01593_consen  283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDG-F----SPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSD  356 (450)
T ss_dssp             HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESS-T----SSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCH
T ss_pred             ccccccCcceeEEEeeecccccccccccceecccC-c----cccccccccccCccc-ccCCcceeeeeccccchhcccch
Confidence            244455667777777888865443 2333333332 1    223444555544444 44433333322 111   12234


Q ss_pred             HHHHHHHHHHHHhh
Q 009226          432 KKLLHAALSALQKL  445 (539)
Q Consensus       432 ~~~l~~~~~~l~~~  445 (539)
                      ++.++.+++.|-..
T Consensus       357 e~~~~~~~~~L~~~  370 (450)
T PF01593_consen  357 EEILERVLDDLRKI  370 (450)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhc
Confidence            55666666665543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.45  E-value=9.5e-12  Score=123.33  Aligned_cols=292  Identities=16%  Similarity=0.139  Sum_probs=156.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      ..+|.|||+|++||+||..|++. ++|+++|++++.||+++|...+-                                 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~---------------------------------   53 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT---------------------------------   53 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence            46899999999999999999875 78999999999999999975321                                 


Q ss_pred             cCCCCCeEEecCCCEEEecC---hHHHHHHhcCCcccccccccccceeeEccCCceeecC-CCHHHHHhcc--CCChhhH
Q 009226          102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP-DSRAAIFKDK--SLGLMEK  175 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~---~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP-~s~~~vf~~~--~ls~~ek  175 (539)
                        ....+.+|. | .+++..   -.+..++...|+.....|....-  -++ +|.+..-- .....+|..+  .+.+   
T Consensus        54 --d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~d-~gglEy~g~tgl~~L~aqk~n~l~p---  123 (447)
T COG2907          54 --DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SLD-MGGLEYSGLTGLAGLLAQKRNLLRP---  123 (447)
T ss_pred             --cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Eec-CCceeeccCCCccchhhccccccch---
Confidence              001123343 1 222221   15677777777766544443211  112 23322111 1111233221  1122   


Q ss_pred             HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH--hcccCCcchhhhhccchhHHHH
Q 009226          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGINR  253 (539)
Q Consensus       176 ~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i--~l~~~~~~~~~~~~s~~~~l~~  253 (539)
                       ++.++++.+.........   ..+ .....+.++.+||++.+.+...++-.++-+  +..+.+..    .++...+. .
T Consensus       124 -Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa~-~  193 (447)
T COG2907         124 -RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPAC-N  193 (447)
T ss_pred             -hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhHH-H
Confidence             222222222221111000   011 123456899999999999887776555422  22221111    12222221 2


Q ss_pred             HHHHHHhhhhccCCCcc-EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          254 LALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       254 i~~~l~s~g~~g~~~ga-~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      +..|....|..--...+ +....||+..-.|   ++++..+++|.++++|..|..-. +|.  .|...+|++-+.|.||+
T Consensus       194 ~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vVi  267 (447)
T COG2907         194 FLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVVI  267 (447)
T ss_pred             HHHHHhccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceeee
Confidence            22333333321111122 3345778888887   55678899999999999998753 553  34446799988899884


Q ss_pred             --CCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009226          333 --DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (539)
Q Consensus       333 --~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~  379 (539)
                        .|+..+ .++  .+ +-|++.+.+. . ....-.+++.-+|..+.|.
T Consensus       268 Ath~dqAl-~mL--~e-~sp~e~qll~-a-~~Ys~n~aVlhtd~~lmPr  310 (447)
T COG2907         268 ATHPDQAL-ALL--DE-PSPEERQLLG-A-LRYSANTAVLHTDASLMPR  310 (447)
T ss_pred             ecChHHHH-Hhc--CC-CCHHHHHHHH-h-hhhhhceeEEeeccccccc
Confidence              465543 222  12 2244444331 1 1223455677778777653

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.29  E-value=2.9e-10  Score=117.69  Aligned_cols=206  Identities=14%  Similarity=0.021  Sum_probs=115.8

Q ss_pred             EeecCCcChHHHHHHHHHH----HCC--cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC-CCCC-CCc
Q 009226          272 IYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF-TVPG-SLA  343 (539)
Q Consensus       272 lyp~gG~geL~qal~r~~a----~~G--g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~-~~~~-l~~  343 (539)
                      .+-.-|...+..-|.+...    ++|  +++++|++|.+|..+. ++. +.|++.||+.+.||+||++-+. .+.+ ...
T Consensus       216 ~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~-~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~  293 (498)
T KOG0685|consen  216 IWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN-TGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHHK  293 (498)
T ss_pred             eechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCC-CCc-EEEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence            3444555566655544221    233  5666779999998752 455 4788999999999999975331 1111 012


Q ss_pred             ccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeC-CCC---CCCCC---CceEEEEEeCCCCc--cC--
Q 009226          344 SSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFP-PRS---LFPEQ---VTSIRVLQLGGNLA--VC--  412 (539)
Q Consensus       344 ~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p-~~~---~~~~~---~~~v~v~~~ss~~~--~c--  412 (539)
                      -+.|+||..+..-..+...+.+-|..+=++.|+-|..-+.+..+. ...   +....   -..+++.+..+...  .|  
T Consensus       294 lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gW  373 (498)
T KOG0685|consen  294 LFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGW  373 (498)
T ss_pred             hcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhhee
Confidence            478899998876666777788888888899987655322222222 222   11100   11355555544320  00  


Q ss_pred             CCCcEEEEEEEeeccccchHHHHHHHHHHHHhhhhcCCCCCCCCccccccccCCc-ceEeEEeEEEEcCcceEEEEeeCc
Q 009226          413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKP-TLLWSALYIQDLSLGYCIMVTKLP  491 (539)
Q Consensus       413 P~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~ilw~~~~~~~~~~~~~~~~~~~~  491 (539)
                      =.|..--|+-+      -..+.+...+..+|.....            |.+-++| +|+=+..++....-|.++...+-.
T Consensus       374 iaG~~~~~me~------lsdEev~e~~~~~lr~fl~------------n~~iP~p~kilRs~W~snp~frGSYSY~svgs  435 (498)
T KOG0685|consen  374 IAGREARHMET------LSDEEVLEGLTKLLRKFLK------------NPEIPKPKKILRSQWISNPFFRGSYSYRSVGS  435 (498)
T ss_pred             ccCCcceehhh------CCHHHHHHHHHHHHHHhcC------------CCCCCCchhhhhhcccCCCccCceeeEeeccc
Confidence            00111111111      1233444444444432111            1123455 577777888888999999999988


Q ss_pred             hHHHHh
Q 009226          492 CFQDVI  497 (539)
Q Consensus       492 ~~~~~~  497 (539)
                      |-+|+=
T Consensus       436 ~~~d~~  441 (498)
T KOG0685|consen  436 DGSDTG  441 (498)
T ss_pred             cccccc
Confidence            877754

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.23  E-value=1e-10  Score=119.14  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=51.2

Q ss_pred             Eeec-CCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          272 IYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       272 lyp~-gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      +||. .....|.+++.+.+++.|++++++++|.+|..+  + ....|.+.+|++++||.+|+
T Consensus       103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081         103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence            6898 668999999999999999999999999999876  3 34678888898999999885

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=1.4e-10  Score=122.16  Aligned_cols=251  Identities=19%  Similarity=0.175  Sum_probs=136.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (539)
                      .|+|+|||++||+||..|+.+|++|+++|+++++||+++|+.... ++|. ++                           
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~~-E~---------------------------   52 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNHV-EH---------------------------   52 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCee-ee---------------------------
Confidence            599999999999999999999999999999999999999977532 1111 00                           


Q ss_pred             CCCCeEEecCCCEEEe-cChHHHHHHhcCCcccccccccccceeeEc--cCCcee--ecCCC------HHHHHhccCCCh
Q 009226          104 HPRNFNLDVSGPRVLF-CADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL  172 (539)
Q Consensus       104 ~~~~f~ldl~Gp~ll~-~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~--~~g~l~--~vP~s------~~~vf~~~~ls~  172 (539)
                                |=++++ +--.++.+|.+.+.+..+..++....++-.  ..|.+-  +.|..      ..+.++.+.+..
T Consensus        53 ----------glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~  122 (485)
T COG3349          53 ----------GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR  122 (485)
T ss_pred             ----------eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence                      122221 222566666666665544444433322111  112111  11111      113334444444


Q ss_pred             hhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHH-HHH-HHHHhcccCCcchhhhhccchhH
Q 009226          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIV-LYAIAMADYDQEVSEYVLKTRDG  250 (539)
Q Consensus       173 ~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~-~~l-~~~i~l~~~~~~~~~~~~s~~~~  250 (539)
                      .+|..   |+-.+......      ....+++..+.+|.|||++++...... +.+ ..+.++.-...+.    .|++..
T Consensus       123 ~~~~~---~~~~l~~~~~g------~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~----~sa~~~  189 (485)
T COG3349         123 REKIR---FVLRLGDAPIG------ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEG----CSARFF  189 (485)
T ss_pred             HHHhH---Hhhccccccch------hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCccc----CcchhH
Confidence            44433   22111100000      012245667899999999877654332 221 1122222112232    445444


Q ss_pred             HHHHHHHHHhhhhccCCCccEEeecCCcC-hHHHHHHHHHHHCCcEEEeCCcceEEEEecC--CCcEEEEEeCCCcEEEc
Q 009226          251 INRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILS  327 (539)
Q Consensus       251 l~~i~~~l~s~g~~g~~~ga~lyp~gG~g-eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~--~g~~~gV~l~~G~~i~A  327 (539)
                      +..+..++  +...+.  +.....+++.. -+.+...+.+.+.|.+++++.+|+.|..+..  +.+++|+.+. +....+
T Consensus       190 lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~  264 (485)
T COG3349         190 LTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ  264 (485)
T ss_pred             HHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence            44333332  222221  11235567765 4457777778889999999999999987531  3446787765 554444


Q ss_pred             CEEE
Q 009226          328 HKLV  331 (539)
Q Consensus       328 d~VI  331 (539)
                      ...+
T Consensus       265 ~~~~  268 (485)
T COG3349         265 QAAL  268 (485)
T ss_pred             eehh
Confidence            4433

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.17  E-value=2e-10  Score=119.82  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=39.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      +||+|||||++|+++|..|++.|++|+|+|+++++||.+.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~   43 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE   43 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence            799999999999999999999999999999999999987664

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.11  E-value=4.5e-10  Score=116.00  Aligned_cols=60  Identities=30%  Similarity=0.409  Sum_probs=52.2

Q ss_pred             EEeecCC---cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG---~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +.+|.+|   ...+.++|.+.+...|++++.+++|++|..+  ++++.+|++++|+ ++||+||..
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence            5688888   6799999999999999999999999999988  7788889998887 999999964

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.09  E-value=8.6e-11  Score=92.05  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             EECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhh
Q 009226           27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (539)
Q Consensus        27 IIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~   68 (539)
                      |||+|++||++|.+|+++|++|+|+|+++++||+++++..++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g   42 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG   42 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC
Confidence            899999999999999999999999999999999999987644

...

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.02  E-value=9.5e-10  Score=116.11  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             EEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       271 ~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      -+||.-. ..++.++|.+.+...|++++++++|++|..+  ++.+..|++++++++.||+||+
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence            4689775 6799999999999999999999999999887  6677789877888999999995

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.95  E-value=1.6e-08  Score=106.25  Aligned_cols=62  Identities=23%  Similarity=0.334  Sum_probs=50.6

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~  333 (539)
                      +.+.|.+|.   +++..+|.+.+...|+.++||++|+.|.... +| ++.+.+.+|++ ++|+.||.+
T Consensus       141 al~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~  206 (429)
T COG0579         141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA  206 (429)
T ss_pred             eEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence            355677773   6899999999999999999999999999872 43 45667788887 999999964

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.92  E-value=7e-09  Score=102.43  Aligned_cols=101  Identities=20%  Similarity=0.352  Sum_probs=69.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      .||.+|||+|++|++.|..|++.|++|+|+||++++||++-+...+..                    .+.+        
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~t--------------------GIlv--------   52 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQT--------------------GILV--------   52 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCC--------------------CeEE--------
Confidence            389999999999999999999999999999999999999988544310                    0111        


Q ss_pred             cCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHH
Q 009226          102 SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA  163 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~  163 (539)
                               .--||+++++.+.-|=-.    +.++.||......-+-..+|.++.+|-+...
T Consensus        53 ---------HkYGpHIFHT~~~~Vwdy----v~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t  101 (374)
T COG0562          53 ---------HKYGPHIFHTDNKRVWDY----VNQFTEFNPYQHRVLALVNGQLYPLPFNLNT  101 (374)
T ss_pred             ---------eeccCceeecCchHHHHH----HhhhhhhhhhccceeEEECCeeeeccccHHH
Confidence                     111799998877432211    1234555543332222238899999987643

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.91  E-value=9.5e-08  Score=103.27  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=45.6

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.|..|.   ..+.++|.+.+...|++|+.+++|.+|..   ++ .+.|++.+| +++||+||+.
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~-~~~v~t~~g-~v~A~~VV~A  232 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQ-PAVVRTPDG-QVTADKVVLA  232 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CC-ceEEEeCCc-EEECCEEEEc
Confidence            55777774   47889999999999999999999999863   22 256776665 6999998853

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.88  E-value=3.1e-08  Score=104.75  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +++|..|.   ..+.++|.+.+...|++++++++|.+|..+  ++. +.|++.+| ++.||+||+.
T Consensus       138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A  199 (393)
T PRK11728        138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC  199 (393)
T ss_pred             EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence            55677774   688999999999999999999999999765  444 46776655 7999999964

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.81  E-value=6.6e-08  Score=101.54  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=44.7

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ++.|.+|.   ..+.++|.+.++..|++++.+++|++|..+  ++. +.|++++| ++.||+||+
T Consensus       134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~  194 (380)
T TIGR01377       134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV  194 (380)
T ss_pred             EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence            44666663   478889999888999999999999999765  444 45776555 799998885

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.78  E-value=1.5e-07  Score=101.85  Aligned_cols=58  Identities=29%  Similarity=0.362  Sum_probs=46.5

Q ss_pred             ecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEC
Q 009226          274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD  333 (539)
Q Consensus       274 p~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~Ad~VI~~  333 (539)
                      +.+|...+.++|.+.++..|++++++++|++|..+  ++++++|+..  +|  ..++|+.||+.
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA  187 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA  187 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence            44555688999999999999999999999999876  6788888763  33  35899999853

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.77  E-value=3.5e-07  Score=101.00  Aligned_cols=48  Identities=29%  Similarity=0.477  Sum_probs=42.7

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+..+.++||||||+| +|++||+.++++|.+|+||||.+.+||.+..
T Consensus         9 ~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~   56 (564)
T PRK12845          9 GTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR   56 (564)
T ss_pred             CCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence            44456678999999999 8999999999999999999999999997663

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.75  E-value=1.7e-07  Score=103.31  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL  332 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~Ad~VI~  332 (539)
                      ++.+|. |.   ..+..++++.+..+|++++.+++|++|..+  ++++++|++.   +|  .+|+|++||.
T Consensus       138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn  205 (546)
T PRK11101        138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN  205 (546)
T ss_pred             EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence            466774 53   477888888889999999999999999876  6777788752   33  3689999995

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.74  E-value=2.5e-07  Score=101.08  Aligned_cols=41  Identities=20%  Similarity=0.409  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+|.+|++||+.++++|.+|+||||.+..||..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            47899999999999999999999999999999999999864

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.72  E-value=2.2e-07  Score=98.96  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=46.5

Q ss_pred             CcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009226          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (539)
Q Consensus       277 G~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~  332 (539)
                      +...+.+.|.+.++++|++|+++++|+++.++  +++++||...   +|+  +|+|+.||+
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl  197 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence            34588999999999999999999999999998  7899999875   455  478999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.71  E-value=6.5e-07  Score=95.31  Aligned_cols=61  Identities=25%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.+|..|.   ..+.++|.+.+...|++|+.+++|++|..+  ++++++|++. +.+++||+||+.
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~a  252 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVVA  252 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEEC
Confidence            356777664   377899999999999999999999999876  5666677764 557999999953

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.69  E-value=2.1e-07  Score=97.54  Aligned_cols=58  Identities=28%  Similarity=0.268  Sum_probs=44.7

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ++.|..|.   ..+.+++.+.+...|++++++++|++|..+  ++. +.|++++| +++||+||.
T Consensus       138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (376)
T PRK11259        138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV  198 (376)
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence            44566663   467778888888899999999999999875  443 46777666 799999884

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.65  E-value=9.6e-07  Score=93.81  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.|..|.   ..+.++|++.+...|++++.+++|++|..+ +++++++|++.+| ++.|++||+.
T Consensus       172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVva  235 (407)
T TIGR01373       172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGVA  235 (407)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEEC
Confidence            44455554   366788888889999999999999999754 1466677887666 6999988754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.64  E-value=8.2e-07  Score=96.27  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             cEEeecCC-c---ChHHHHHHHHHHH----CC--cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          270 ALIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG-~---geL~qal~r~~a~----~G--g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +.+.|..| .   +.++++|.+.++.    .|  ++++++++|+.|..+  ++..+.|++.+| +++||.||+.
T Consensus       198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva  268 (497)
T PTZ00383        198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS  268 (497)
T ss_pred             EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence            35567553 3   5889999999888    78  678999999999875  455677887666 6999999864

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.60  E-value=3e-08  Score=93.70  Aligned_cols=43  Identities=14%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||+|||+|.+||+||.+|+++|+||+++|++..+||....
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            4699999999999999999999999999999999999987543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.59  E-value=3.5e-08  Score=92.79  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .+-||||||||.+||+||++||++|.||+++|++.++||-..
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            467999999999999999999999999999999999988543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.55  E-value=1.9e-06  Score=86.00  Aligned_cols=58  Identities=14%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFT  337 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~  337 (539)
                      .-..+|...++.+|+.++-|..|..+....+++..++|++++|..+.|+++|++ ..|+
T Consensus       154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence            344677788899999999999999998655567778999999999999999853 4444

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.54  E-value=1.1e-06  Score=99.45  Aligned_cols=59  Identities=22%  Similarity=0.235  Sum_probs=47.3

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +.+|..|.   ..+.++|.+.+.. |++++.+++|++|..+  ++.+ .|++.+|+.+.|++||..
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~A  458 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVLA  458 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEEC
Confidence            56787774   4888999888888 9999999999999876  5544 477777777889999853

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.51  E-value=8.8e-07  Score=95.15  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=42.7

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      .+.+.++||+|||||++|+-+|+.+|.+|++|+++|++|.-.|-....
T Consensus         7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs   54 (532)
T COG0578           7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS   54 (532)
T ss_pred             cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence            455578999999999999999999999999999999999988865553

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.48  E-value=2.5e-07  Score=89.64  Aligned_cols=46  Identities=13%  Similarity=0.281  Sum_probs=43.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhh
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~   68 (539)
                      .+++|||||++|++||..|+.+|++|+|+||..-+|||.+|-.+++
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~   47 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG   47 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence            3699999999999999999999999999999999999999987765

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.47  E-value=1.4e-07  Score=99.88  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=40.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||||||||++|++||+.|+++|.+|+++|+++.+|....+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            5699999999999999999999999999999999999987766

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.47  E-value=3e-06  Score=95.08  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .++||||||+|.+||.||+.++++|.+|+|+||+..+|+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            4689999999999999999999999999999998888644

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.45  E-value=1.2e-05  Score=85.17  Aligned_cols=86  Identities=13%  Similarity=0.162  Sum_probs=55.5

Q ss_pred             cchhHHHHHHHHHHhhhhccCCCccEEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCC--cEEEEEe-CC
Q 009226          246 KTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRL-AS  321 (539)
Q Consensus       246 s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g--~~~gV~l-~~  321 (539)
                      |+.+.-..+.+|+.-+.++.. ..++.+.+|- .-.|..-|.+-.+..|+++++|+.|+.|..+.+++  .+.++.+ .+
T Consensus       174 Sa~E~rRyl~Rf~h~~~~l~~-l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~  252 (500)
T PF06100_consen  174 SAVEFRRYLHRFIHEIPGLND-LSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQD  252 (500)
T ss_pred             hHHHHHHHHHHHHHhcCCCCC-ccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcC
Confidence            455555556666655544332 1235567776 35899999999999999999999999998864333  2334443 44


Q ss_pred             CcE--E---EcCEEEE
Q 009226          322 GQD--I---LSHKLVL  332 (539)
Q Consensus       322 G~~--i---~Ad~VI~  332 (539)
                      |+.  |   .-|.|++
T Consensus       253 g~~~~i~l~~~DlV~v  268 (500)
T PF06100_consen  253 GKEETIDLGPDDLVFV  268 (500)
T ss_pred             CCeeEEEeCCCCEEEE
Confidence            542  3   2566764

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.44  E-value=1.5e-05  Score=88.60  Aligned_cols=43  Identities=28%  Similarity=0.471  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||||||+|.+|++||..++++|++|++|||++..||.+..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~   57 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT   57 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence            3689999999999999999999999999999999999996653

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.40  E-value=2.9e-07  Score=91.33  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||+|||+|.+||+||++|++.|++|+++||++.+||..
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            46999999999999999999999999999999999998753

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.37  E-value=3.6e-07  Score=90.88  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .++||+|||+|++||+||.+|+++|++|+++|++..+||.
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg   63 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG   63 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            4689999999999999999999999999999999999874

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.37  E-value=4e-07  Score=97.47  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|||||||||++|++||+.|+++|++|+++||++.+|..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            4699999999999999999999999999999999988764

>PRK10015 oxidoreductase; Provisional

Probab=98.34  E-value=4.8e-07  Score=96.87  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .+|||||||||++|++||+.|+++|.+|+++||++++|-.
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            4699999999999999999999999999999999887643

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.29  E-value=8.1e-07  Score=94.50  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=39.1

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        13 ~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      |..|.-.+..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364          9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            445555556799999999999999999999999999999998754

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.28  E-value=7.5e-07  Score=96.30  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=40.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +..|||+|||||.+|+.||..|++.|++|+++|+++.+||.+..
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            56799999999999999999999999999999999999998754

>PRK07121 hypothetical protein; Validated

Probab=98.28  E-value=1e-06  Score=96.12  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .++||||||+|.+|++||+.++++|.+|+||||++..||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999998653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.28  E-value=6.9e-07  Score=96.75  Aligned_cols=44  Identities=18%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |++|||||||+|.+|+.||..+++.|++|+++|+++.+||.|..
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~   44 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN   44 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence            45699999999999999999999999999999998899998644

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.25  E-value=7.8e-07  Score=91.68  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ++||+|||||++||++|..|+|+|++|+|+|+++..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            479999999999999999999999999999998654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR00275 flavoprotein, HI0933 family

Probab=98.25  E-value=1e-05  Score=85.94  Aligned_cols=65  Identities=20%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             EeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 009226          272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPG  340 (539)
Q Consensus       272 lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~  340 (539)
                      .||..+ ..++.++|.+.++..|+++++++.|++|..+  ++ .+.|++ +++++.||.||+. .....|.
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIlAtG~~s~p~  163 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVILATGGLSYPQ  163 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence            466554 5689999999999999999999999999654  33 356776 6778999999953 4333343

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.25  E-value=9e-07  Score=95.14  Aligned_cols=44  Identities=16%  Similarity=0.375  Sum_probs=39.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~-~~GG~~~s   63 (539)
                      |++|||||||||.+|+.||..|++.|++|+++|+.+ .+||.+..
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            357999999999999999999999999999999987 48998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.24  E-value=1e-06  Score=94.90  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ...+|+|||||.+||+||.+|++.|.+|+++|+++.+||.|.-
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            3579999999999999999999999999999999999999865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.24  E-value=8.8e-07  Score=94.82  Aligned_cols=40  Identities=30%  Similarity=0.501  Sum_probs=34.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ||||||||++|++||+++||+|.+|+++|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999998754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.23  E-value=1.2e-06  Score=94.10  Aligned_cols=41  Identities=12%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -+++....|||+|||||++|++||..|+++|++|+++|++.
T Consensus        32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            45566678999999999999999999999999999999975

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.21  E-value=1.2e-06  Score=94.15  Aligned_cols=43  Identities=30%  Similarity=0.487  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC-CCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~-~GG~~~   62 (539)
                      |.+|||||||+|.+|+.||..|++.|++|+++|+++. +||.+-
T Consensus         1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            3579999999999999999999999999999999875 799653

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.21  E-value=1.7e-05  Score=85.12  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=48.6

Q ss_pred             EeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 009226          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL  332 (539)
Q Consensus       272 lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~-G~~i~Ad~VI~  332 (539)
                      .++.+|...+.++|.+.++..|++|+++++|++|..+.+++++++|...+ +.+++|+.||+
T Consensus       116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl  177 (432)
T TIGR02485       116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL  177 (432)
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence            45666667899999999999999999999999998752246777877543 45799999985

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.20  E-value=1.4e-06  Score=93.44  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccccchhh
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD   68 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~~GG~~~s~~~~~   68 (539)
                      .++.+||+|||||.+|+.+|.+|.++|.. +++|||++.+||.|+....++
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            34679999999999999999999999999 999999999999988866554

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.20  E-value=1.5e-06  Score=87.38  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      |||+|||||++||++|..|++.|.+|+|+|+++..+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            7999999999999999999999999999999988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.19  E-value=1.6e-06  Score=94.83  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=38.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      +..|||||||||+.|+.+|..|++.|.+|+++||++..+|..
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS   45 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            456999999999999999999999999999999998877755

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.17  E-value=1.7e-06  Score=93.48  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |.+|||||||+|.+|+.||..|++.|++|+++|+ +.+||.+..
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~   43 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN   43 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence            4569999999999999999999999999999999 789997753

>PRK06116 glutathione reductase; Validated

Probab=98.16  E-value=1.7e-06  Score=93.27  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||||||+|.+|+.||..|++.|++|+++|++ .+||.+..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n   44 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN   44 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence            4699999999999999999999999999999996 89997643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.16  E-value=2e-06  Score=93.30  Aligned_cols=43  Identities=14%  Similarity=0.177  Sum_probs=39.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +.+|||||||+|.+|+.||.+|++.|++|+++|+++.+||.|.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            3469999999999999999999999999999999999999764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.16  E-value=2.1e-06  Score=90.60  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=35.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      +|..+||||||||++||++|..|+++|.+|+|+|+++..
T Consensus         4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            456789999999999999999999999999999998765

>PRK08013 oxidoreductase; Provisional

Probab=98.14  E-value=2.2e-06  Score=90.92  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      |.++||+|||||++||++|+.|++.|++|+|+|+++..
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            34689999999999999999999999999999998753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.14  E-value=2.2e-06  Score=92.72  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +|||||||+|++|+.||..|++.|++|+++|+ +.+||.+..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            48999999999999999999999999999999 889998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PTZ00058 glutathione reductase; Provisional

Probab=98.13  E-value=2.8e-06  Score=93.58  Aligned_cols=52  Identities=21%  Similarity=0.343  Sum_probs=43.0

Q ss_pred             CCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           11 PVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        11 ~~~~-~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |+|. ++.-...+|||||||+|.+|..||..+++.|++|+++|++ .+||.|-.
T Consensus        36 ~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         36 SAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             CcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            4443 4443435799999999999999999999999999999996 79997754

>PRK06370 mercuric reductase; Validated

Probab=98.13  E-value=2.6e-06  Score=92.23  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=39.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +|.+|||||||+|.+|+.||.+|++.|++|+++|+. ..||.|..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   45 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN   45 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence            466799999999999999999999999999999986 57776643

>PRK09126 hypothetical protein; Provisional

Probab=98.13  E-value=2.3e-06  Score=90.32  Aligned_cols=37  Identities=22%  Similarity=0.393  Sum_probs=34.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .++||||||||++||++|..|+++|++|+|+||++..
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            3699999999999999999999999999999999875

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.13  E-value=2.6e-06  Score=93.09  Aligned_cols=44  Identities=32%  Similarity=0.481  Sum_probs=38.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ++.+|||||||||+.|+.+|+.|++.|.+|++|||++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~   46 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS   46 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence            35679999999999999999999999999999999987655443

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.10  E-value=2.8e-06  Score=93.12  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~-~~~GG~   60 (539)
                      +.+|||||||||++|+.||.++||.|++|+++|++ +.+|+.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            45799999999999999999999999999999998 477763

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.10  E-value=2.6e-06  Score=91.75  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +|||||||+|.+|+.||.++++.|++|+++|+ +.+||.+..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            59999999999999999999999999999999 589998763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.10  E-value=2.8e-06  Score=89.56  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      |+.+||+|||||++||++|++|++.|.+|+++|+++
T Consensus         1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            345899999999999999999999999999999875

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.10  E-value=3.2e-06  Score=89.89  Aligned_cols=39  Identities=21%  Similarity=0.285  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      +||||||||+.|+++|..|++.|++|+||||++.+|+.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a   40 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET   40 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence            599999999999999999999999999999998776444

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.10  E-value=2.8e-06  Score=91.53  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ++|||||||+|.+|+.||..|++.|++|+++|++ .+||.|.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            3699999999999999999999999999999995 6899764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.10  E-value=2.8e-06  Score=91.93  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||||||||.+|+.||..|++.|++|+++|++. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            46999999999999999999999999999999987 9997654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.09  E-value=2.4e-06  Score=81.38  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             EEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccc
Q 009226           26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS   63 (539)
Q Consensus        26 IIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~~GG~~~s   63 (539)
                      +|||||++||++|+.|.+.|.+ |++||+++.+||.|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            7999999999999999999999 9999999999999885

...

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.08  E-value=3.7e-06  Score=91.09  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +.+|||||||+|.+|+.||..|++.|++|+++|++ .+||.+..
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~   44 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            34699999999999999999999999999999985 77887754

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.08  E-value=4.1e-06  Score=88.53  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      |||||||||++|+++|..|++.|++|+++|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.07  E-value=3.7e-06  Score=88.83  Aligned_cols=51  Identities=16%  Similarity=0.169  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.++|.+.++..|++++.++.|+++..+  ++. +.|++++|+++.||.||.
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEE
Confidence            467777888888889999999999999865  444 457778899999999994

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.07  E-value=3.3e-06  Score=89.66  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +|..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            355789999999999999999999999999999996

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.07  E-value=9.8e-05  Score=77.89  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC--cEEEcCEEEE-CCCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF  336 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~-~p~~  336 (539)
                      ..+.++|.+.++..||+++.+..|.++..+  ++++++|.+.++  .+++||+||+ ...+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence            478899999999999999999999999876  677778876666  4799999885 4445

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.07  E-value=3.9e-06  Score=91.06  Aligned_cols=42  Identities=21%  Similarity=0.307  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            4799999999999999999999999999999996 78998854

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.05  E-value=4.2e-06  Score=84.56  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |||+|||||++|+.+|..|++.|++|+++|+++ .||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            699999999999999999999999999999987 7886543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.04  E-value=3.4e-06  Score=85.50  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~~   61 (539)
                      |||||||+|.+|+++|.+|+++| ++|+|||+.+++....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            79999999999999999999998 6999999988776555

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06184 hypothetical protein; Provisional

Probab=98.04  E-value=4.9e-06  Score=91.02  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      |+++||+|||||++||++|+.|++.|.+|+|+||++.+
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            45799999999999999999999999999999999866

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.04  E-value=4.7e-06  Score=88.38  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      +||||||||++|++||..|+++|++|+++|++...+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~   37 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK   37 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            6999999999999999999999999999999865543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.03  E-value=4.8e-06  Score=91.22  Aligned_cols=40  Identities=23%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+| +||+||+.++++|.+|+||||.+..||..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            47899999999 99999999999999999999999999865

>PRK07045 putative monooxygenase; Reviewed

Probab=98.03  E-value=4.8e-06  Score=87.86  Aligned_cols=52  Identities=15%  Similarity=0.248  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHH-HCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       280 eL~qal~r~~a-~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      .|-+.|.+.++ ..|+++++++.|+.|..+. ++.++.|++++|+++.||.||.
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIg  159 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVG  159 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEE
Confidence            56666766664 4678999999999998762 5555678888999999999994

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.03  E-value=4.6e-06  Score=88.02  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...+||+|||||++||++|+.|+++|++|+++|+++
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            456999999999999999999999999999999975

>PRK14694 putative mercuric reductase; Provisional

Probab=98.02  E-value=5.2e-06  Score=89.96  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +...|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            345799999999999999999999999999999986 69998754

>PLN02661 Putative thiazole synthesis

Probab=98.02  E-value=4.9e-06  Score=85.41  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG   59 (539)
                      ++||+|||+|++|+.||+.|+++ |++|+++|++..+||
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG  130 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG  130 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence            58999999999999999999986 999999999999987

>PRK07236 hypothetical protein; Provisional

Probab=98.02  E-value=5.1e-06  Score=87.66  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      |..+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5668999999999999999999999999999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.02  E-value=5.1e-06  Score=89.27  Aligned_cols=53  Identities=25%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~  332 (539)
                      .++.+.|.+.+...|++++++++|++|..++ ++++++|++.  +|+  .+.|+.||+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVl  186 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVL  186 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEE
Confidence            4788999999999999999999999998852 5778887653  343  368899884

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.02  E-value=4.7e-06  Score=87.48  Aligned_cols=51  Identities=24%  Similarity=0.191  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.+...| ++++.++.|++|..+  ++. +.|++++|+++.||.||.
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVG  157 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEE
Confidence            467778888777777 999999999999765  444 457778999999999884

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02463 lycopene beta cyclase

Probab=98.02  E-value=6.7e-06  Score=88.23  Aligned_cols=45  Identities=31%  Similarity=0.619  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        11 ~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .-|.+.+-....|||||||||++||++|+.|+++|++|+++|+++
T Consensus        17 ~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         17 ELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             cccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            334455555567999999999999999999999999999999976

>PRK13748 putative mercuric reductase; Provisional

Probab=98.02  E-value=4.9e-06  Score=92.27  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||||||||.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence            5699999999999999999999999999999997 89998754

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.02  E-value=5.6e-06  Score=91.48  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--CCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~--~~GG~~~   62 (539)
                      .++||||||+|.+||+||+.++++|.+|+||||.+  .+||...
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  8899654

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.01  E-value=5.4e-06  Score=87.65  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ...||+|||||++||++|..|+++|++|+|+||++..
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            4579999999999999999999999999999998754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.01  E-value=5.4e-06  Score=87.33  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      .+||+|||||++||++|+.|++.|.+|+|+|+++...
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            5899999999999999999999999999999988753

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.01  E-value=5.8e-06  Score=89.79  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEecc------CCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~------~~~~GG~~~s   63 (539)
                      .+|||||||+|.+|++||.+|++.|++|+++|+      +...||.|..
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n   51 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN   51 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence            469999999999999999999999999999998      4678998754

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.01  E-value=6.1e-06  Score=82.10  Aligned_cols=41  Identities=37%  Similarity=0.499  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC--CCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~--~GG~   60 (539)
                      +.++||||||+|++||.||+.||.+|++|+++|+...  +||.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ   45 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ   45 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence            5679999999999999999999999999999998754  5664

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.01  E-value=5.3e-06  Score=88.37  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=42.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      +...+|+|||||.+||++|+.|.+.|++|+++||.+.+||.|.--
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            446799999999999999999999999999999999999999874

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.00  E-value=5.6e-06  Score=87.29  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ||||||||++|+++|+.|++.|++|+++|+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999877763

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.00  E-value=7.8e-06  Score=94.65  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+.+||+|||||.+|++||..|++.|++|+|+|+++.+||..+.
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            35689999999999999999999999999999999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.00  E-value=6.7e-06  Score=91.37  Aligned_cols=44  Identities=25%  Similarity=0.405  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..++||||||+|.+||+||+.++++|.+|+|+||.+..||....
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~   50 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF   50 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence            35789999999999999999999999999999999999997643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.98  E-value=5.9e-06  Score=87.71  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (539)
                      ..+-++|.+.++..|.+++.++.|+++..+  ++. +.|++++|+++.||.|| ++.
T Consensus       112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG  165 (405)
T PRK05714        112 RVVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG  165 (405)
T ss_pred             HHHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            356677777777789999999999999765  333 45777899999999999 443

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.98  E-value=6e-06  Score=85.92  Aligned_cols=44  Identities=20%  Similarity=0.367  Sum_probs=41.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~   65 (539)
                      .-+++|||||++|++||..|++.|++|.++|+++.+||+.+.++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            46899999999999999999999999999999999999987765

>PRK12831 putative oxidoreductase; Provisional

Probab=97.97  E-value=9.2e-06  Score=87.87  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=41.6

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +...+..||+|||+|.+||+||..|++.|++|+++|+++.+||.+.
T Consensus       135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            3445678999999999999999999999999999999999999874

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.97  E-value=7.2e-06  Score=90.70  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..|||||||||.+||+||..|++.|++|+++|++ .+||.+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            3599999999999999999999999999999996 68987653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.97  E-value=8e-06  Score=85.83  Aligned_cols=60  Identities=32%  Similarity=0.360  Sum_probs=46.4

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.+|..|.   ..+.+++++.+...| ..+..+++|..+..+  . +.++|.+.+|. +.|++||+.
T Consensus       144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a  207 (387)
T COG0665         144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA  207 (387)
T ss_pred             eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence            356777774   478899999999999 556668999998754  3 66788877776 999999964

>PLN02985 squalene monooxygenase

Probab=97.97  E-value=9.3e-06  Score=88.82  Aligned_cols=40  Identities=23%  Similarity=0.359  Sum_probs=35.9

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ......+||||||||++|+++|.+|+++|++|+++||...
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            3455678999999999999999999999999999999754

>PRK06834 hypothetical protein; Provisional

Probab=97.97  E-value=8e-06  Score=88.91  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      |+.+||||||||++|+++|+.|++.|.+|+|+|+++.
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5679999999999999999999999999999999875

>PRK06185 hypothetical protein; Provisional

Probab=97.96  E-value=7.4e-06  Score=86.96  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +.++||+|||||++|+++|+.|+++|.+|+++|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3569999999999999999999999999999999863

>TIGR02053 MerA mercuric reductase

Probab=97.96  E-value=7.6e-06  Score=88.56  Aligned_cols=40  Identities=28%  Similarity=0.520  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |||||||+|.+|+.||.+|++.|++|+++|++. +||.|-.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n   40 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN   40 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence            799999999999999999999999999999976 7887643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.96  E-value=7.4e-06  Score=83.03  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      .....||||||||.+|++.|++|+|.|++|+|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            345799999999999999999999999999999985

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.95  E-value=7.3e-06  Score=86.51  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC---CCeEEEeccC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN   54 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~---G~~VlvlE~~   54 (539)
                      |..+||+|||||++||++|+.|+|+   |.+|+|+|++
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4679999999999999999999998   9999999996

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.95  E-value=9.3e-06  Score=84.87  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +||+|||+|+.|+++|+.|++.|++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.95  E-value=9.6e-06  Score=90.30  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=40.9

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      +++...++||||||+|.+||.||+.++++|.+|+||||+...||..
T Consensus         6 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057          6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             cCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            4566778999999999999999999999999999999998777643

>PRK14727 putative mercuric reductase; Provisional

Probab=97.94  E-value=9.4e-06  Score=88.25  Aligned_cols=46  Identities=15%  Similarity=0.232  Sum_probs=41.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +.+..|||||||+|.+|+.+|..|++.|++|+++|+++.+||.|..
T Consensus        12 ~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         12 RSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            3445699999999999999999999999999999999999998865

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.94  E-value=0.00013  Score=78.96  Aligned_cols=58  Identities=31%  Similarity=0.423  Sum_probs=48.6

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (539)
                      ...|.-|.   ..+.|+++++|...|+.|.-+++|++|.+.  +++..+|.+.-| .|+|.+||
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G-~iet~~~V  236 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG-SIETECVV  236 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc-ceecceEE
Confidence            45677773   588999999999999999999999999987  555679997666 48899988

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.93  E-value=8e-06  Score=86.40  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            37999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.93  E-value=9.6e-06  Score=89.71  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+|.+|++||..|+++|.+|+|||+++.+||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            47899999999999999999999999999999999999964

>PLN02697 lycopene epsilon cyclase

Probab=97.93  E-value=1.3e-05  Score=87.62  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ....+||||||||++||++|.+|++.|.+|+++|+....
T Consensus       105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~  143 (529)
T PLN02697        105 GDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF  143 (529)
T ss_pred             ccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence            345699999999999999999999999999999986443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.91  E-value=8.9e-06  Score=85.48  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009226          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (539)
Q Consensus       279 geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (539)
                      .++.+.|.+.+.. .|+++++++.|++|..+  ++. +.|++++|+++.||.|| ++.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG  159 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG  159 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence            4677888887777 49999999999999765  333 46777888899999998 444

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06847 hypothetical protein; Provisional

Probab=97.91  E-value=1.3e-05  Score=84.10  Aligned_cols=51  Identities=18%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      .++.+.|.+.+...|+++++++.|++|..+  ++. +.|.+.+|+++.||.||.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence            366777777777789999999999999765  333 467778999999999995

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.90  E-value=1.5e-05  Score=91.98  Aligned_cols=45  Identities=16%  Similarity=0.151  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+..+|+|||+|.+|++||..|++.|++|+++|+++.+||..+.
T Consensus       536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            346679999999999999999999999999999999999998754

>PRK07190 hypothetical protein; Provisional

Probab=97.90  E-value=1.1e-05  Score=87.68  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      +..+||+|||||++||++|+.|++.|.+|+++||++.+
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            34689999999999999999999999999999999875

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.90  E-value=8.8e-05  Score=79.97  Aligned_cols=53  Identities=23%  Similarity=0.349  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~  333 (539)
                      +.+-+-|.+.+...|++++.++ |..+..+. +|.+.+|++++|++++||.|| ++
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDAS  207 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDAS  207 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-S
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECC
Confidence            4677888888899999998875 88887764 788889999999999999999 54

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=1.2e-05  Score=81.84  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~   65 (539)
                      +..+||||||+|++||+||.+++|+|.++.+++.....||......
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            3579999999999999999999999999555555677787665544

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.89  E-value=1.2e-05  Score=89.91  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=36.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ...|||||||||+.|+.+|+.|++.|.+|+++|+++.-+|
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            3459999999999999999999999999999999987666

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.88  E-value=1.2e-05  Score=89.44  Aligned_cols=40  Identities=23%  Similarity=0.430  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .++||||||+|.+||+||+.++++|.+|+||||.+..||.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            3689999999999999999999999999999999999885

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.88  E-value=1.1e-05  Score=84.82  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +||+|||||++|+++|..|++.|++|+|+|+++
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            799999999999999999999999999999975

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.88  E-value=1.2e-05  Score=87.87  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.+.+.+..+..|.++++++.|++|...  ++. ..|++.+|+++.+|.||+.
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~a  273 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLYA  273 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEEe
Confidence            56778888888899999999999998754  333 4566778999999999854

>PTZ00367 squalene epoxidase; Provisional

Probab=97.88  E-value=1.3e-05  Score=88.45  Aligned_cols=37  Identities=27%  Similarity=0.528  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...++||||||||++|+++|.+|+++|++|+|+|++.
T Consensus        30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3357999999999999999999999999999999975

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.88  E-value=1.2e-05  Score=85.08  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             CcChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 009226          277 GQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP  334 (539)
Q Consensus       277 G~geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI-~~p  334 (539)
                      ....|-++|.+++...+ .+++.++.|+.+..+  ++.+. |+++ +|++++||.|| ++.
T Consensus       102 ~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654         102 PRSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCC
Confidence            35678888888887777 799999999999886  44444 7777 99999999999 444

>PRK06753 hypothetical protein; Provisional

Probab=97.88  E-value=1.2e-05  Score=84.33  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            38999999999999999999999999999999865

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.87  E-value=1.4e-05  Score=85.56  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=41.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      +.+||+||||+|.+|..||.++++.|++|+++|+...+||-|-.+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            467999999999999999999999999999999999999988664

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.4e-05  Score=88.87  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=36.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ...||||||+|++||.||+.++++|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4569999999999999999999999999999999987764

>PRK06126 hypothetical protein; Provisional

Probab=97.86  E-value=1.5e-05  Score=88.09  Aligned_cols=38  Identities=8%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+..+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34568999999999999999999999999999999864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.86  E-value=1.6e-05  Score=92.69  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ++..+|+|||+|++||+||..|++.|++|+|+|+++.+||..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            3467999999999999999999999999999999999999865

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.85  E-value=1.9e-05  Score=89.22  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ++..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            45679999999999999999999999999999999999997653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.85  E-value=1.6e-05  Score=88.36  Aligned_cols=43  Identities=30%  Similarity=0.278  Sum_probs=38.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      |...++||||||+|.+||.||+.++++|.+|+++||....||.
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          3 LPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             CCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4456789999999999999999999999999999999887774

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.85  E-value=1.4e-05  Score=84.66  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999874

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.85  E-value=1.4e-05  Score=85.94  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar----~G~~VlvlE~~~~   56 (539)
                      |||+|||||++||++|+.|++    .|.+|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            799999999999999999999    8999999999653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.85  E-value=1.6e-05  Score=89.00  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=36.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..++||||||+|++||.||+.++++|.+|+++||+...||
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            3468999999999999999999999999999999987665

>PLN02507 glutathione reductase

Probab=97.84  E-value=1.6e-05  Score=86.73  Aligned_cols=53  Identities=15%  Similarity=0.235  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (539)
                      .++.+.+.+..+..|.++++++.|+++..+  ++. +.|.+.+|+++.+|.||+..
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a~  296 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFAT  296 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEee
Confidence            467777777788899999999999999754  333 35667788899999999643

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.84  E-value=1.7e-05  Score=88.50  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .+...++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus         7 ~~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078          7 KIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             cccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            34446799999999999999999999999999999998776664

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.84  E-value=2.2e-05  Score=86.89  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC--CCCccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~--GG~~~s~~   65 (539)
                      ..+||+|||||++||++|+.|++.|.+|+|+||++..  +++...+.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~   68 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA   68 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence            5689999999999999999999999999999999866  44444444

>PRK08244 hypothetical protein; Provisional

Probab=97.83  E-value=1.6e-05  Score=86.78  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ++||+|||||++||++|+.|++.|.+|+|+||++..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            489999999999999999999999999999998753

>PRK07538 hypothetical protein; Provisional

Probab=97.83  E-value=1.6e-05  Score=84.73  Aligned_cols=35  Identities=14%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            48999999999999999999999999999998654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.83  E-value=2.1e-05  Score=87.13  Aligned_cols=42  Identities=26%  Similarity=0.552  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .++||||||+|.+|++||+.++++|.+|++|||++..||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            478999999999999999999999999999999999988543

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.83  E-value=1.8e-05  Score=83.07  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~   60 (539)
                      ||||||||++||++|.+|+++  |++|+++|+++..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999988  9999999999988764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.82  E-value=1.6e-05  Score=84.28  Aligned_cols=51  Identities=24%  Similarity=0.169  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.+...|++++.+++|+++..+  ++. +.|++++|+++.||.||.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence            477788888888889999999999999765  443 467778899999999994

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.82  E-value=2.2e-05  Score=86.56  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .++||||||+|.+||.||+.+++.|.+|+++||....||.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            4689999999999999999999999999999999987774

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.82  E-value=2.4e-05  Score=84.37  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .++.+||+|||+|.+||++|..|++.|++|+++|+++.+||...
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            44678999999999999999999999999999999999999753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.82  E-value=2e-05  Score=86.99  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      +..+||+|||+|++||++|..|++.|.+|+|+|+++..+..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~   48 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL   48 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence            56689999999999999999999999999999999876543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.82  E-value=2.4e-05  Score=87.98  Aligned_cols=47  Identities=21%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +.+.++..+|+|||+|.+||++|..|++.|++|+++|+++.+||.++
T Consensus       304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            34445678999999999999999999999999999999999999865

>PRK11445 putative oxidoreductase; Provisional

Probab=97.82  E-value=1.7e-05  Score=82.71  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .|||+|||||++||++|..|+++ ++|+++|+++..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            38999999999999999999999 999999999754

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.81  E-value=2.1e-05  Score=87.27  Aligned_cols=52  Identities=15%  Similarity=0.106  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~  332 (539)
                      ..|.++|.+.+...|.+++.++.++++.++  +|+++||...   +|+  .++|+.||+
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVL  192 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTKAVVL  192 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeCeEEE
Confidence            368888888887889999999999999987  7899998753   333  578999985

>PRK12839 hypothetical protein; Provisional

Probab=97.81  E-value=2.3e-05  Score=86.90  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||||||+|.+|++||+.|+++|.+|+++|++...||.+..
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            4789999999999999999999999999999999999997653

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.79  E-value=1.8e-05  Score=85.89  Aligned_cols=62  Identities=16%  Similarity=0.130  Sum_probs=45.9

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCC--cEEEcCEEEEC
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G--~~i~Ad~VI~~  333 (539)
                      +.+.|..|.   ..+.++|.+.++..|++++++++|++|..+. ++. +.|++   .+|  .+++|++||+.
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A  235 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG  235 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence            455777773   6899999999999999999999999998752 333 33432   234  36899999854

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.79  E-value=3e-05  Score=83.77  Aligned_cols=47  Identities=15%  Similarity=0.114  Sum_probs=41.4

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar--~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +......+|+|||+|.+|+.||..|++  .|++|+++|+.+.+||..+.
T Consensus        21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         21 SSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            334456789999999999999999987  79999999999999998875

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.79  E-value=2.3e-05  Score=87.62  Aligned_cols=59  Identities=15%  Similarity=0.301  Sum_probs=45.4

Q ss_pred             eecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       273 yp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      ++..+. ..|.++|.+.+...|.+++.++.|.++..++ +|++.||..   .+|+  .+.|+.||+
T Consensus       159 ~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVL  223 (617)
T PTZ00139        159 AAADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAHYTVI  223 (617)
T ss_pred             ecCCCcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECCcEEE
Confidence            343334 3788999998888999999999999998742 788888864   3564  578999984

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.79  E-value=2.5e-05  Score=80.41  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=36.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      +-+|||||||++||++|++|+|.|++|+|+|++.-+=|.-.++
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si   44 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSI   44 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcce
Confidence            3589999999999999999999999999999987664443333

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.77  E-value=2.3e-05  Score=85.13  Aligned_cols=53  Identities=11%  Similarity=0.175  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|++|..+  ++....|++.+|+++.+|.||+.
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~a  283 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMMA  283 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEEe
Confidence            477888888888999999999999999764  23334566778889999999853

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.77  E-value=3e-05  Score=86.31  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=40.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+.++||||||+|.+|++||..++++|++|++|||++..||.+..
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   53 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW   53 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            345799999999999999999999999999999999999997654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.77  E-value=2.2e-05  Score=85.37  Aligned_cols=43  Identities=14%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~~   62 (539)
                      +..+||||||||+.|+++|+.|++.  |++|+||||++.+|+..+
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS   47 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS   47 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence            4568999999999999999999984  899999999988776553

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.77  E-value=2.7e-05  Score=91.70  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+||+|||||++||+||.+|++.|++|+++|+++.+||....
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            4689999999999999999999999999999999999997754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.77  E-value=2.4e-05  Score=82.25  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.7

Q ss_pred             cEEEECCChhHHHHHHHH--hhCCCeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~L--ar~G~~VlvlE~~~~~   57 (539)
                      ||||||||++||++|.+|  ++.|++|+++|++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8899999999999887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.77  E-value=2.6e-05  Score=91.54  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=39.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .+..||+|||+|++||+||..|++.|++|+|+|+.+.+||..+
T Consensus       428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            4567999999999999999999999999999999999999765

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.77  E-value=2.4e-05  Score=86.38  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=37.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      +-..++||||||+|++||.||+.++ .|.+|+++||.+..||.
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            3445789999999999999999986 59999999999988874

>PRK07588 hypothetical protein; Provisional

Probab=97.77  E-value=2.3e-05  Score=82.78  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .||+|||||++||++|..|++.|.+|+++|+++.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3899999999999999999999999999999864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.76  E-value=3.2e-05  Score=83.91  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ...+||+|||+|.+|+++|..|++.|++|+++|+++++||...
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            3557999999999999999999999999999999999999754

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.76  E-value=2.5e-05  Score=83.81  Aligned_cols=58  Identities=10%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             eecCCcC-hHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEe-CCCc--EEEcCEEEE
Q 009226          273 YPIYGQG-ELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLVL  332 (539)
Q Consensus       273 yp~gG~g-eL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l-~~G~--~i~Ad~VI~  332 (539)
                      ++....+ ++.++|.+.++. .|.+|+++++|..|..+  +++++||.. .+|+  ++.|+.||+
T Consensus       121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL  183 (433)
T PRK06175        121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL  183 (433)
T ss_pred             ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence            4444443 688888877765 59999999999999876  677888653 3554  589999985

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.76  E-value=3.2e-05  Score=88.68  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .+..||+|||+|++||+||..|++.|++|+|+|+++.+||...
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            3567999999999999999999999999999999999999865

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.74  E-value=2.8e-05  Score=87.12  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+|++||.||+.++++|.+|+++||....||..
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s   89 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT   89 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence            35899999999999999999999999999999998877743

>PLN02546 glutathione reductase

Probab=97.74  E-value=2.9e-05  Score=85.59  Aligned_cols=44  Identities=27%  Similarity=0.168  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC---------CCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~---------~~~GG~~~s   63 (539)
                      ..+|||||||+|.+|..||..+++.|++|+++|++         ..+||-|-.
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n  129 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL  129 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence            34699999999999999999999999999999973         568887655

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.74  E-value=3.1e-05  Score=85.03  Aligned_cols=41  Identities=17%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ...|||+|||||++|++||.+|++.|++|+++|++  +||.+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~  249 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL  249 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence            34699999999999999999999999999999874  999875

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.73  E-value=2.7e-05  Score=85.33  Aligned_cols=41  Identities=17%  Similarity=0.178  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..|+|||||.+||++|..|.+.|.+|+++||++.+||.|+-
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            36999999999999999999999999999999999999974

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK02106 choline dehydrogenase; Validated

Probab=97.73  E-value=3.2e-05  Score=85.82  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~   56 (539)
                      ..+||+||||+|.+|+++|.+|++ +|++|+|||+.+.
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            356999999999999999999999 8999999999854

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.71  E-value=0.00085  Score=70.62  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             EeecCCc----ChHHHHHHHHHHHC-CcEEEeCCcceEEEEecCCCcEEEEEe---C--CCcEEEcCEEEECC
Q 009226          272 IYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRL---A--SGQDILSHKLVLDP  334 (539)
Q Consensus       272 lyp~gG~----geL~qal~r~~a~~-Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~--~G~~i~Ad~VI~~p  334 (539)
                      .+...|+    |+|.+.|.+.+... |..+++++.|+.|.+.. +|+ |.|++   .  +.++++|+.|++++
T Consensus       170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvGA  240 (488)
T PF06039_consen  170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVGA  240 (488)
T ss_pred             eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEECC
Confidence            4666775    79999999988877 99999999999999863 453 45543   2  23578999999753

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.71  E-value=3e-05  Score=86.22  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=45.8

Q ss_pred             EeecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       272 lyp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .++..++ ..|.++|.+.+...|.+++.++.|.++.++  +|++.||..   .+|+  .+.|+.||+
T Consensus       127 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl  191 (575)
T PRK05945        127 CYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF  191 (575)
T ss_pred             EecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence            3454443 478899999888899999999999999876  778877753   4564  578999995

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.70  E-value=3.5e-05  Score=81.16  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .||+|||||++|+.||+.|++.|++|+++|+++..+-
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s   39 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT   39 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence            5999999999999999999999999999999876644

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.70  E-value=3.5e-05  Score=85.56  Aligned_cols=51  Identities=20%  Similarity=0.326  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .+.++|.+.+...|.+++.++.|++|..+  +|+++||..   .+|+  .+.|+.||+
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl  185 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL  185 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence            68888888888889999999999999887  788888764   3565  578999985

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05868 hypothetical protein; Validated

Probab=97.69  E-value=3.8e-05  Score=80.68  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            48999999999999999999999999999998764

>PLN02815 L-aspartate oxidase

Probab=97.69  E-value=3.6e-05  Score=85.54  Aligned_cols=38  Identities=24%  Similarity=0.367  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ++||||||+|++||.||+.+++.| +|+++||....||.
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            589999999999999999999999 89999999998884

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.68  E-value=4.1e-05  Score=83.67  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=37.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      |||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999999865

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK10262 thioredoxin reductase; Provisional

Probab=97.68  E-value=4e-05  Score=78.79  Aligned_cols=42  Identities=12%  Similarity=0.198  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+||+|||+|.+||.||..|++.|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            4689999999999999999999999999999965 67887544

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.68  E-value=4.5e-05  Score=85.41  Aligned_cols=43  Identities=19%  Similarity=0.303  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~-~~~GG~~~s   63 (539)
                      .+|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            3799999999999999999999999999999984 579997654

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.67  E-value=4.4e-05  Score=84.96  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G---~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+|.+||.||+.++++|   .+|+++||....||..
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            4689999999999999999999998   8999999999877743

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.67  E-value=6.4e-05  Score=81.23  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ....+|+|||+|.+|+.+|..|++.|++|+++|+++++||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            3457999999999999999999999999999999999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.66  E-value=6e-05  Score=81.65  Aligned_cols=43  Identities=26%  Similarity=0.393  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ++..+|+|||+|.+|+++|..|++.|++|+++|+++.+||..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            3568999999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.66  E-value=4.3e-05  Score=86.03  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      ..|..+|.+.+...|+.++.++.|.+|..+  +|+++||..   .+|+  .+.|+.||+
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL  214 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI  214 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478888888888899999999999999987  788888765   3565  367999885

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.66  E-value=4.1e-05  Score=81.02  Aligned_cols=38  Identities=24%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ||+|||||++|+.+|.+|++.|++|+++|+++..|-..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~   39 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA   39 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence            79999999999999999999999999999998876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.66  E-value=4.1e-05  Score=85.95  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=38.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCC--CCCccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSLS   65 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~~--GG~~~s~~   65 (539)
                      +.++||+|||||++||++|+.|++ .|.+|+|+|+++..  .|++..+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~   78 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIA   78 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEC
Confidence            567999999999999999999999 59999999998643  45554433

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.66  E-value=4.7e-05  Score=80.80  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      -+|+|||||++||++|.+|++.|++|+|+|+++..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            58999999999999999999999999999998754

>TIGR00551 nadB L-aspartate oxidase

Probab=97.64  E-value=4.8e-05  Score=82.90  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeCC-C--cEEEcCEEEE
Q 009226          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~Ad~VI~  332 (539)
                      ..|.++|.+.+.. .|.+++.++.|++|..+  ++++++|...+ +  ..++|+.||+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl  183 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL  183 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence            4788999888877 68999999999999876  67788876543 3  3688999985

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06996 hypothetical protein; Provisional

Probab=97.64  E-value=5e-05  Score=80.51  Aligned_cols=40  Identities=15%  Similarity=0.285  Sum_probs=35.0

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCCC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G----~~VlvlE~~~~   56 (539)
                      +..+..+||+|||||++|+++|+.|++.|    ++|+++|+.+.
T Consensus         6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            35556799999999999999999999997    47999999764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.64  E-value=5.5e-05  Score=82.99  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ...|||+|||||.+|++||.+|++.|++|+++|.  ++||.+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            4569999999999999999999999999999985  6899765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.63  E-value=6.1e-05  Score=90.08  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ...+||||||+|.+|++||+.++++|.+|++|||.+..||...
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            3469999999999999999999999999999999999999753

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.63  E-value=5.5e-05  Score=80.63  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH   60 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~   60 (539)
                      +|+|||||++||++|..|+++| .+|+|+||++.++..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~   39 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV   39 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCC
Confidence            6999999999999999999998 599999999876543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.61  E-value=5.6e-05  Score=84.47  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG   59 (539)
                      .++||||||+|.+||.||+.++++  |.+|+++||++..|+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            468999999999999999999998  999999999987544

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.61  E-value=5.7e-05  Score=82.73  Aligned_cols=40  Identities=18%  Similarity=0.294  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+|.+||.||..+++ |.+|+++||.+..||..
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            36899999999999999999976 99999999999888753

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.61  E-value=5.5e-05  Score=84.34  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....+|+|||||++||++|.+|++.|.+|+|+||++
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            356899999999999999999999999999999975

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.61  E-value=6e-05  Score=84.98  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +..+|+|||+|.+||++|..|++.|++|+++|+++++||...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999864

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.60  E-value=6.1e-05  Score=81.67  Aligned_cols=42  Identities=10%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~~   62 (539)
                      ..+||||||||+.|+++|+.|++.  |++|+|+||.+.+|-..+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence            457999999999999999999999  999999999777766544

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.60  E-value=4.6e-05  Score=79.48  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       281 L~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +.+.+.+.++..+..-.....|+.|..+  +++++||++.+|+.+.||.||+.
T Consensus        97 y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVla  147 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLA  147 (392)
T ss_dssp             HHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-
T ss_pred             HHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEe
Confidence            3444445555656666678899999887  78999999999999999998853

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.55  E-value=8.1e-05  Score=80.98  Aligned_cols=42  Identities=31%  Similarity=0.358  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--------CCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~--------~~GG~~~s   63 (539)
                      +|||||||+|.+|+.||..+++.|++|+++|+..        .+||.|-.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            5899999999999999999999999999999742        57887644

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK08275 putative oxidoreductase; Provisional

Probab=97.54  E-value=7.8e-05  Score=82.53  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .++.+.|.+.+...|.+++.++.|.+|..++ +|++.||..   .+|+  .+.|+.||+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl  194 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVIL  194 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEE
Confidence            4788999998888999999999999998752 577888763   3565  478999885

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.54  E-value=7.6e-05  Score=82.47  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .++.+.|.+.+...|.++++++.|+++.++. +++++||..   .+|+  .++|+.||+
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl  191 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL  191 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence            4788888888888999999999999998872 344888753   4564  488999995

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.53  E-value=7.6e-05  Score=74.51  Aligned_cols=56  Identities=20%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcE--EEcCEEEE-CCCCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLVL-DPSFT  337 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~--i~Ad~VI~-~p~~~  337 (539)
                      .+-+.|-+.....||.++-+-+|.+....  +|++..|.+.++..  ++||.+|. +.++.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsff  317 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFF  317 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccc
Confidence            57788999999999999999999999887  88888888888765  57887774 55554

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.52  E-value=8.7e-05  Score=82.57  Aligned_cols=41  Identities=22%  Similarity=0.152  Sum_probs=36.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+|.+||.||+.++++|  .+|+++||....||.+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            3589999999999999999999874  7999999998887743

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.51  E-value=0.00013  Score=79.36  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ...+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            346999999999999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.51  E-value=0.0001  Score=80.98  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=41.1

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +...++||||||+|.+||.||..++.+|.+|+++||....||+...
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            3456799999999999999999999999999999999998866544

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.51  E-value=9.9e-05  Score=78.52  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~--~i~Ad~VI~  332 (539)
                      ++.++|.+.++..|+++++++.|.++..+  ++++..|...+|+  .++||.||+
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL  312 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL  312 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence            78999999999999999999999999876  5666666555554  489999885

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.50  E-value=8.8e-05  Score=74.25  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCC---------CCCccccchh
Q 009226           21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFY---------GSHFSSLSIA   67 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar----~G~~VlvlE~~~~~---------GG~~~s~~~~   67 (539)
                      .+.||+|||+|..|++.|..|.+    .|.+|+|+|+++.|         ||.+..|+++
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp  144 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP  144 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence            47899999999999999999854    37999999999986         5555555544

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.50  E-value=0.0001  Score=79.87  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.++|.+.+...|.+++.+ .|+.+..+  ++++++|.. +|+.+.|+.||+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL  169 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI  169 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence            478999999998899999876 78888765  678888875 677899999985

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.48  E-value=0.00011  Score=81.00  Aligned_cols=40  Identities=18%  Similarity=0.338  Sum_probs=36.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      +.++||||||+|.+||.||+.+++. .+|+++||....||.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            3468999999999999999999986 899999999988874

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.47  E-value=0.0001  Score=81.89  Aligned_cols=40  Identities=25%  Similarity=0.175  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~   61 (539)
                      ++||||||+|++||.||..++++  |.+|+++||....||..
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            57999999999999999999987  57999999999888744

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.47  E-value=0.00012  Score=81.50  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCC---CcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~---g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      ..|.++|.+.+...|.+++.++.|.+|..++ +   |++.||..   .+|+  .++|+.||+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  200 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVF  200 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence            4788999988888999999999999998762 2   78888864   3565  478999985

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.46  E-value=0.00013  Score=82.37  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=44.2

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      -|+...+-+.|.|||+|.+||+||..|-|+|+.|+|+||.|++||...-
T Consensus      1778 ~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1778 CPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             CCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            4555667789999999999999999999999999999999999998764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.44  E-value=0.00014  Score=68.86  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ||||||||.+|+.||..|++.|.+|+++|+++.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.42  E-value=0.00012  Score=74.98  Aligned_cols=57  Identities=14%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----C--CCeEEEeccCCCCCCCccccc------hhhh-hhhhccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS------IADL-THFLNSHS   77 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar----~--G~~VlvlE~~~~~GG~~~s~~------~~~~-~~~~~~~~   77 (539)
                      +++||+|||||.+||+||.+|.+    +  -.+|.|+|+...+||+.-|-.      ++++ ++|..+..
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~a  144 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGA  144 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCC
Confidence            46999999999999999998854    2  458999999999999987743      3333 56766543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.40  E-value=0.00016  Score=78.29  Aligned_cols=39  Identities=31%  Similarity=0.443  Sum_probs=35.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +|||||+|.+|++||.+|++.|++|+++|+++ +||.|-.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n   40 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN   40 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence            79999999999999999999999999999975 7776653

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00014  Score=80.01  Aligned_cols=35  Identities=34%  Similarity=0.597  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ..++|+||||+|.+|.++|..|+++|++|++||+.
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            45799999999999999999999999999999985

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.37  E-value=0.00022  Score=76.49  Aligned_cols=45  Identities=20%  Similarity=0.225  Sum_probs=41.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+...|.|||+|.+||++|..|+++|+.|+++|+.+..||+...
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            445578999999999999999999999999999999999999876

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.35  E-value=0.00023  Score=74.15  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ..+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            35899999999999999999999999999999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.34  E-value=0.00033  Score=56.42  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      |+|||+|..|+-+|..|++.|++|+++|+++++.
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            8999999999999999999999999999999987

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.33  E-value=0.00029  Score=80.77  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++...|+|||+|.+||+||..|++.|++|+++|+.+..|+..
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~  422 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPF  422 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccccc
Confidence            3467899999999999999999999999999999988877653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.32  E-value=0.00028  Score=78.39  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ...+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            446899999999999999999999999999999999999764

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.29  E-value=0.00027  Score=77.72  Aligned_cols=38  Identities=34%  Similarity=0.330  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      |||||||+|++|+.||.++++.|++|+++|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            79999999999999999999999999999998554443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.28  E-value=0.00027  Score=78.82  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHh----hCCCeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~La----r~G~~VlvlE~~~~~   57 (539)
                      ||||||+|.+||.||+.++    ++|.+|+++||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    789999999998863

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.26  E-value=0.00023  Score=78.06  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHC-CcEEEeCCcceEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~-Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~Ad~VI~  332 (539)
                      ..+.++|.+.+... |.+++.++.|.+|..+  +|+++||...+ ++  .+.|+.||+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL  191 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL  191 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence            47889998888765 8999999999999876  78888887533 33  588999985

>PRK07846 mycothione reductase; Reviewed

Probab=97.25  E-value=0.00028  Score=76.15  Aligned_cols=40  Identities=25%  Similarity=0.487  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      +|||||||+|.+|..||.+  +.|++|+++|+ +.+||-|-..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~   40 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV   40 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence            4899999999999988766  46999999998 4688876553

>TIGR01810 betA choline dehydrogenase

Probab=97.25  E-value=0.00024  Score=78.29  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~   56 (539)
                      |+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 69999999754

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.24  E-value=0.00029  Score=76.03  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      +|||||||+|.+|..||++  ..|++|+++|+ +.+||.|-..
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~   41 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV   41 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence            5999999999999888654  46999999998 5789987653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.21  E-value=0.00041  Score=77.71  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .+..+|+|||+|.+|+++|..|++.|++|+++|+++..||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3567999999999999999999999999999999999999754

>PLN02785 Protein HOTHEAD

Probab=97.20  E-value=0.00047  Score=76.59  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...||+||||+|.+|+++|.+|++ +.+|++||+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            346999999999999999999999 699999999753

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.20  E-value=0.00047  Score=73.96  Aligned_cols=43  Identities=14%  Similarity=0.061  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHH-hhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~L-ar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ....|+|||+|.+|+.||..| ++.|++|.++|+.+.+||..+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            346799999999999999976 4679999999999999999875

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.20  E-value=0.00029  Score=78.71  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      |||||+|.+||.||+.++++|.+|+|+||++.+||.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g   36 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA   36 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence            799999999999999999999999999999976543

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.18  E-value=0.00046  Score=80.72  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .++||||||+|.+||.||+.+++.|.+|+++||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            468999999999999999999999999999999885

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.17  E-value=0.00036  Score=80.17  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~   57 (539)
                      .+|+|||||++||++|..|++.  |++|+|+|+++..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            3799999999999999999998  8999999999873

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.17  E-value=0.00034  Score=71.23  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||+|||+|.+|-.||...++.|.+...+|+|..+||-+-.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn   80 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN   80 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence            5799999999999999999999999999999999999998754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.16  E-value=0.00042  Score=75.12  Aligned_cols=53  Identities=13%  Similarity=0.133  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (539)
                      .++.+.+.+..+..|..+++++.|++|..+  ++. +.|.+.+|+++.+|.||+..
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a~  270 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMAV  270 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEee
Confidence            366777778888899999999999999754  343 34667789999999988643

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.08  E-value=0.00043  Score=73.74  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ++.|||||||||++|+-||++.||.|.+++++=-|
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            45699999999999999999999999999988654

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.73  E-value=0.0012  Score=65.82  Aligned_cols=45  Identities=22%  Similarity=0.301  Sum_probs=38.7

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~   61 (539)
                      +.+...||.||||+|+.|++.|..|.-.  +.+|.|||+....|=+.
T Consensus        43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq   89 (453)
T KOG2665|consen   43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ   89 (453)
T ss_pred             ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee
Confidence            5666789999999999999999999877  99999999987664433

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.69  E-value=0.0018  Score=64.68  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .|||||+|++||+|+-.+-..|-.|++||++...||+..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            699999999999999999999999999999999999754

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.67  E-value=0.0018  Score=67.82  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=32.9

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +-..+.|||||||||++|.-||++.||-|-+.++|-.|
T Consensus        23 ~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   23 SSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            33456899999999999999999999999988887654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.61  E-value=0.002  Score=68.17  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ||+|||+|++||++|+.|++. ++|+|+=|.+.-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            999999999999999999999 999999998764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.52  E-value=0.0029  Score=67.02  Aligned_cols=52  Identities=12%  Similarity=0.212  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ++.+.+.+.++..|.++++++.|++|..   ++. +.|++.+|+++.||.||+...
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~G  238 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGIG  238 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECCC
Confidence            5556677777889999999999999853   222 457788999999999997543

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.52  E-value=0.0031  Score=68.81  Aligned_cols=39  Identities=31%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY   57 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~   57 (539)
                      ....||.||||||-+|++.|++|++. ..+||+||+....
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            44689999999999999999999998 6899999996444

>PRK09897 hypothetical protein; Provisional

Probab=96.49  E-value=0.0028  Score=69.43  Aligned_cols=38  Identities=11%  Similarity=0.078  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCC-CC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYG-SH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~~~G-G~   60 (539)
                      ++|+|||+|.+|+.+|..|.+.+.  +|+|+|++..+| |.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~   42 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM   42 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence            589999999999999999988754  899999999999 54

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.38  E-value=0.0032  Score=67.68  Aligned_cols=53  Identities=15%  Similarity=0.152  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..   +++...|.+ +++++.||.||+.+.
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a~G  243 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVATG  243 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEECcC
Confidence            46778888888899999999999999943   344555654 556799999996543

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.35  E-value=0.032  Score=57.03  Aligned_cols=43  Identities=19%  Similarity=0.310  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+..+-|||+|++||++|..|-|.    |+++.++|--+..||..-.
T Consensus        21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence            446799999999999999999775    7899999999999997544

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.32  E-value=0.0044  Score=66.31  Aligned_cols=49  Identities=22%  Similarity=0.147  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ++.+.+.+..+..|.++++++.|++|.    .+   .|.+++|+++.+|.||..+.
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~~G  277 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWSTG  277 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEccC
Confidence            567777788899999999999999984    22   35678999999999996543

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0034  Score=63.14  Aligned_cols=34  Identities=35%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~   53 (539)
                      .-+||.||||+|-+||+||-..++-|++|.+||-
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            3479999999999999999999999999999995

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.21  E-value=0.0047  Score=65.03  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .+|+|||+|..|+.+|..|++.|++|+++|+++++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            6999999999999999999999999999999999999876

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.99  E-value=0.0073  Score=64.92  Aligned_cols=50  Identities=12%  Similarity=0.117  Sum_probs=39.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|.    ..   .|++++|+++.+|.||+...
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a~G  238 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEGVG  238 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEECcC
Confidence            3677778888888999999999999983    22   35667888999999996543

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.98  E-value=0.0081  Score=60.35  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .--|.||||||+|+-||+.++++|.+|.+.|-++.=+--+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa   42 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA   42 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence            3468999999999999999999999999999997766443

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=95.95  E-value=0.0085  Score=61.97  Aligned_cols=41  Identities=24%  Similarity=0.437  Sum_probs=34.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCC
Q 009226           15 YPPIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNP   55 (539)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~   55 (539)
                      ..+.+...|||||+|||+.|++.|+.|..+    -+||+++|..+
T Consensus        29 ~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   29 AKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             cccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            445565689999999999999999999865    57999999983

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.76  E-value=0.031  Score=57.29  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.|..|.   ..+.+++.+.+.+.|++++.+++|+.|..+  ++++++|.+.+| +++||+||+.
T Consensus       126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  188 (337)
T TIGR02352       126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA  188 (337)
T ss_pred             EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence            55677774   689999999999999999999999999876  667778886555 8999999954

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.71  E-value=0.0036  Score=58.95  Aligned_cols=40  Identities=13%  Similarity=0.178  Sum_probs=35.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~   61 (539)
                      +-||||||+|-+||+||+..+++  ..+|.++|+.--+||-+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa  117 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA  117 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence            46999999999999999999855  68999999999888754

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.49  E-value=0.016  Score=58.66  Aligned_cols=43  Identities=23%  Similarity=0.252  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..||..|||+|-+|+.+|.+.+.-|.+|.++|..-.+||-|-.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN   61 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence            4799999999999999999999999999999999899997754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.35  E-value=0.017  Score=54.42  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||.|..||.+|+.||++|++|+-+|.+..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            589999999999999999999999999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.06  E-value=0.025  Score=51.65  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             EEECCChhHHHHHHHHhhC-----CCeEEEeccCCC
Q 009226           26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPF   56 (539)
Q Consensus        26 IIIGaGl~GL~aA~~Lar~-----G~~VlvlE~~~~   56 (539)
                      +|||+|++|++++..|.+.     ..+|+|+|+++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999888     568999999776

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.02  E-value=0.025  Score=59.08  Aligned_cols=50  Identities=18%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~  336 (539)
                      ++.+.+.+.++..|.++++++.|++|.    ++   +|.+.+|+++.+|.||+.+..
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G~  241 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATGA  241 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccCC
Confidence            566777788889999999999999883    23   466778999999999976543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.02  E-value=0.012  Score=62.62  Aligned_cols=38  Identities=21%  Similarity=0.400  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      +|||+|||||-.|.-+|.-.+-.|.+|.++|++|+--|
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG  104 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG  104 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence            49999999999999999999999999999999998655

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=94.80  E-value=0.079  Score=55.79  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             ecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226          274 PIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (539)
Q Consensus       274 p~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~  336 (539)
                      |.-|+   -.+.+.+.+.+..+|++|++++.|..|.+.  ++.+.+|++++|++|.||+||+.|..
T Consensus       165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence            45565   467788888889999999999999999987  66678899999999999999987654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.79  E-value=0.036  Score=52.04  Aligned_cols=32  Identities=31%  Similarity=0.346  Sum_probs=28.1

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      |.|||+|..|...|..++++|++|.++|.++.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            78999999999999999999999999999753

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.73  E-value=0.037  Score=58.29  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV  331 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~Ad~VI  331 (539)
                      -++.+...+..+.+|.+++++++|++|..   +    +|++.+|+ +|.|+.+|
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv  255 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV  255 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence            36667777888999999999999999843   2    46677888 49999999

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=94.68  E-value=0.021  Score=56.54  Aligned_cols=43  Identities=7%  Similarity=0.160  Sum_probs=38.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G------~~VlvlE~~~~~GG~~~   62 (539)
                      .....++|||+|+.|..+|++|++.+      ..|+++|+....||...
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            34478999999999999999999999      89999999999988654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.62  E-value=0.049  Score=59.24  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +...|+|||+|.+|+.+|..|++.|++|.++|+++.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            345799999999999999999999999999998764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.56  E-value=0.04  Score=58.39  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            469999999999999999999999999999999887653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.46  E-value=0.045  Score=50.12  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|-.|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            37899999999999999999999999999976

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=0.027  Score=57.08  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ..|||+|||+|.+|-+||.+.||+|.+.=++  .++.||..
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv  248 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV  248 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence            3599999999999999999999999987665  35688864

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.08  E-value=0.063  Score=57.03  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~   62 (539)
                      .++|+|||+|.+|...|..|.+.    ++ |.++|+++..|+-.+
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia   44 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA   44 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence            37899999999999999999876    34 999999999987554

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=94.05  E-value=0.07  Score=54.86  Aligned_cols=42  Identities=10%  Similarity=0.015  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar--~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ...|.|||+|.+|..+|..|-+  .+..|.++|+.+.++|..+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence            4589999999999999999888  47999999999999999876

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=93.96  E-value=0.12  Score=54.37  Aligned_cols=60  Identities=23%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++++|..|.   ..+.++|.+.+.. |++++.+++|.+|..+  +++ ++|++.+|+.+.||+||+.
T Consensus       123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~a  185 (381)
T TIGR03197       123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVLA  185 (381)
T ss_pred             ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEEc
Confidence            356787774   5888999988888 9999999999999865  444 6788888888999999853

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.87  E-value=0.075  Score=55.84  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ++.+.+.+.++..|.+++++++|++|..+  ++. +.|.+.+|+++.||.||+...
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a~G  236 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAAAG  236 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEECcC
Confidence            46666777788899999999999999754  333 467788999999999997543

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=93.86  E-value=0.35  Score=50.68  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             cCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHH
Q 009226          206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF  285 (539)
Q Consensus       206 ~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal  285 (539)
                      ...++.+||++.++++...+-+..+....+|.++.   .+      ..+.-.+...|   ...| .+-.+||...|++.|
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~---a~~g-l~sV~GGN~qI~~~l  134 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAG---ATGG-LWSVEGGNWQIFEGL  134 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeee---ccCC-ceEecCCHHHHHHHH
Confidence            45788999999999988776666666667777642   12      22222222222   1223 457899999999877


Q ss_pred             HHHHHHCCcEEEeCCcceEEEEecCCCc-EEEEEeCC--CcE-EEcCEEEECCCC
Q 009226          286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQD-ILSHKLVLDPSF  336 (539)
Q Consensus       286 ~r~~a~~Gg~i~L~~~V~~I~~~~~~g~-~~gV~l~~--G~~-i~Ad~VI~~p~~  336 (539)
                      .+   ..|+.+ +++.|++|.....++. ...|...+  +.. -..|.||+..++
T Consensus       135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl  185 (368)
T PF07156_consen  135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL  185 (368)
T ss_pred             HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence            54   578899 9999999933222332 23444332  222 235999875433

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.85  E-value=0.073  Score=55.93  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .+|+|||+|..|+-+|..|++.|++|+++|+.+++...
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence            47999999999999999999999999999999887543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=93.80  E-value=0.042  Score=57.01  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=27.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~   56 (539)
                      .+|+|+||.|+.+|+.|++|...+ .+++.||+++.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            489999999999999999999987 99999999764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.72  E-value=0.065  Score=54.78  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +|.|||+|+-|...|..|+++|++|.++|+++.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.69  E-value=0.091  Score=53.81  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +....|.|||+|.-|...|.+|+++|++|.++.+++
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            445679999999999999999999999999999864

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.55  E-value=0.099  Score=47.14  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=29.1

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      |.|+|+|-.|+..|+.|+++|++|.++.++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.46  E-value=0.084  Score=57.07  Aligned_cols=34  Identities=26%  Similarity=0.132  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .|.|||.|.+|+++|..|++.|++|++.|+++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            3899999999999999999999999999998775

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.45  E-value=0.1  Score=56.08  Aligned_cols=38  Identities=21%  Similarity=0.102  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++.+.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            47999999999999999999999999999999887554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=93.40  E-value=0.089  Score=57.14  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            4799999999999999999999999999999987643

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.19  E-value=0.1  Score=56.36  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            5799999999999999999999999999999988754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.87  E-value=0.13  Score=52.04  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|+++|++|.++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            359999999999999999999999999999875

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=92.82  E-value=0.55  Score=49.34  Aligned_cols=57  Identities=23%  Similarity=0.359  Sum_probs=46.6

Q ss_pred             EEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 009226          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL  332 (539)
Q Consensus       271 ~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G-~~i~Ad~VI~  332 (539)
                      .+||.-. ..++.++|.+.++..|++|+++++|++|  +  +++ ..|++.++ ++++||+||+
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl  135 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL  135 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence            5799776 6799999999999999999999999999  3  333 56776443 5699999995

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR02053 MerA mercuric reductase

Probab=92.81  E-value=0.12  Score=55.86  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence            57999999999999999999999999999999887543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.79  E-value=0.13  Score=59.69  Aligned_cols=55  Identities=13%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ++.+.+.+.++..|.++++++.|++|..+. ++....|.+++|+++.+|.||+.+.
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~G  242 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFSTG  242 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECCC
Confidence            455667778889999999999999996531 2345677888999999999996543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.79  E-value=0.12  Score=55.21  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||.|..|+..|..|+++|++|..+|++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5699999999999999999999999999998764

>PRK06370 mercuric reductase; Validated

Probab=92.78  E-value=0.14  Score=55.47  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            57999999999999999999999999999999987654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.72  E-value=0.11  Score=52.47  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            489999999999999999999999999999854

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=92.63  E-value=0.34  Score=53.28  Aligned_cols=60  Identities=23%  Similarity=0.298  Sum_probs=47.6

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~  332 (539)
                      ++.+| .|.   ..+..++.+.+..+|++++.+++|++|..+  ++++++|++.   +|+  +|+|++||.
T Consensus       117 a~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn  184 (516)
T TIGR03377       117 AVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN  184 (516)
T ss_pred             EEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence            36677 453   478889999999999999999999999876  6777777753   353  689999994

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.59  E-value=0.14  Score=51.74  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|.++|+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999874

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.51  E-value=0.14  Score=55.18  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999988753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.47  E-value=0.17  Score=54.49  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|+|+|+|..|+.+|..|++.|++|.++|+++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45679999999999999999999999999999975

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.44  E-value=0.15  Score=55.13  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  210 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG  210 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence            47999999999999999999999999999999887543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=92.44  E-value=0.14  Score=54.98  Aligned_cols=37  Identities=11%  Similarity=0.067  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            4799999999999999999999999999999988754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=92.35  E-value=0.16  Score=54.91  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999987654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.33  E-value=0.16  Score=55.25  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999987543

>PRK07846 mycothione reductase; Reviewed

Probab=92.25  E-value=0.17  Score=54.70  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            579999999999999999999999999999998775

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.20  E-value=0.17  Score=54.91  Aligned_cols=37  Identities=11%  Similarity=0.011  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|.++|+.+++..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  209 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP  209 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            4799999999999999999999999999999887644

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.18  E-value=0.17  Score=54.81  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~  211 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            5799999999999999999999999999999988754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=92.11  E-value=0.21  Score=54.02  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-.|..|++.|.+|.++|++++++.
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999998765

>PRK04148 hypothetical protein; Provisional

Probab=92.10  E-value=0.14  Score=45.52  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 888889999999999999999876

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.07  E-value=0.17  Score=49.32  Aligned_cols=32  Identities=25%  Similarity=0.487  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +++|||+|--|...|..|++.|+.|+++|+++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            68999999999999999999999999999975

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=92.07  E-value=0.17  Score=54.02  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999988773

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.05  E-value=0.17  Score=52.02  Aligned_cols=33  Identities=36%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|.-|...|..++++|++|.++|.++.
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            599999999999999999999999999999763

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.04  E-value=0.15  Score=59.01  Aligned_cols=53  Identities=13%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ++.+.+.+..+..|.++++++.|++|..   +++..+|++++|+++.+|.||+.+.
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G  235 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG  235 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence            3455566777889999999999999863   3455678889999999999996543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.97  E-value=0.2  Score=50.75  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .|.|||+|..|.-.|..|+++|++|+++|+++.-
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            6899999999999999999999999999998653

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=91.96  E-value=0.2  Score=54.08  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            57999999999999999999999999999999987553

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.48  E-value=0.21  Score=57.89  Aligned_cols=37  Identities=22%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|+.|+-+|..|++.|.+|.++|+.+++-.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            4699999999999999999999999999999887643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.45  E-value=0.22  Score=50.18  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            599999999999999999999999999998754

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=91.44  E-value=0.25  Score=53.70  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  221 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA  221 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence            47999999999999999999999999999999887543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.40  E-value=0.16  Score=51.03  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=38.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC--------CCCCCCccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS   65 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~--------~~~GG~~~s~~   65 (539)
                      -+|+|||+|..|.-+|....--|-+|+++|.|        +.+||+..+..
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            57999999999999999999999999999999        66788877654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.39  E-value=0.23  Score=50.36  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|-.|...|..|+++|++|.+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            48999999999999999999999999999853

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=91.30  E-value=0.5  Score=44.52  Aligned_cols=52  Identities=21%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+-+.+.++.+|..+++++.|++|..+  +++ +.|++.+|++++|++||+.
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA  133 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA  133 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence            467777878888899899999999999987  444 7899989989999999963

...

>TIGR03452 mycothione_red mycothione reductase

Probab=91.25  E-value=0.25  Score=53.39  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999988754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.17  E-value=0.23  Score=51.68  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+.|||+|..||+.|+.||+.|++|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            68999999999999999999999999999864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.16  E-value=0.26  Score=50.39  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~   55 (539)
                      .|.|||+|..|+++|..|++.|  ..|.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5999999999999999999999  5899999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=91.11  E-value=0.24  Score=54.50  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      .+|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            479999999999999999999999999999988764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.10  E-value=0.26  Score=49.92  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||+|.-|...|..|+++|++|.++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3599999999999999999999999999998763

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=90.89  E-value=0.29  Score=52.61  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|++|.++++.+++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4799999999999999999999999999999887654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=90.65  E-value=0.34  Score=52.53  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence            469999999999999999999999999999998876653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=90.63  E-value=0.29  Score=52.85  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=90.62  E-value=0.26  Score=52.58  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||.|..|+..|..|+++|++|.++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999999764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.57  E-value=0.31  Score=49.78  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|--|...|++|+++|.+|.++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999999963

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=90.52  E-value=0.68  Score=50.63  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             ccEEeecCCc---ChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009226          269 GALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (539)
Q Consensus       269 ga~lyp~gG~---geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~~  333 (539)
                      ++.+.|.+|.   +.+.++|.+.++..| ++++++++|++|..+. ++. +.|.+   .+|+  ++.|++||+.
T Consensus       170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva  241 (494)
T PRK05257        170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG  241 (494)
T ss_pred             eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence            3456777763   589999999988887 5999999999998752 443 33443   3454  6999999854

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=90.51  E-value=0.75  Score=50.14  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~~s   63 (539)
                      +||||||||+.|+++|+.|++.  |.+|+||||.+.+|...+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~   43 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN   43 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence            6999999999999999999997  9999999998877754443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=90.50  E-value=14  Score=38.83  Aligned_cols=50  Identities=26%  Similarity=0.219  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+-+.+.+.+. .++++++++.|++|..+  ++ .+.|++++|++++|+.||-
T Consensus        87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~-~~~v~~~~g~~i~a~~VvD  136 (374)
T PF05834_consen   87 ADFYEFLLERAA-AGGVIRLNARVTSIEET--GD-GVLVVLADGRTIRARVVVD  136 (374)
T ss_pred             HHHHHHHHHHhh-hCCeEEEccEEEEEEec--Cc-eEEEEECCCCEEEeeEEEE
Confidence            456666777766 77889999999999765  33 3567789999999999983

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK10262 thioredoxin reductase; Provisional

Probab=90.46  E-value=0.33  Score=49.69  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..|+|||+|..|+-+|..|++.|++|+++++.+..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998865

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=90.43  E-value=0.31  Score=49.49  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~   53 (539)
                      .|.|||+|..|...|..|+++|++|.++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999987

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=90.42  E-value=0.32  Score=52.36  Aligned_cols=36  Identities=11%  Similarity=0.122  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      -.|+|||+|..|+-.|..|++.|.+|.++|+.+++.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  202 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL  202 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence            469999999999999999999999999999988764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.24  E-value=0.31  Score=56.73  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .++|||+|+.|+-+|..|++.|.+|.++|+.+++-.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            689999999999999999999999999999987543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.24  E-value=0.36  Score=48.93  Aligned_cols=32  Identities=38%  Similarity=0.504  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++|++|.++|+++
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            59999999999999999999999999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=90.24  E-value=0.39  Score=44.39  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|-.|..||..|.+.|.+|.++|.+.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            579999999999999999999999999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.23  E-value=0.32  Score=49.69  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|..|...|..|+++|++|.++|++.
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999865

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=90.23  E-value=0.35  Score=54.60  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~  349 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP  349 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence            4799999999999999999999999999999998765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=90.14  E-value=0.33  Score=53.42  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .+|+|||||.+|+-+|..|+..|++|+++++.+..
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            48999999999999999999999999999998876

>PTZ00058 glutathione reductase; Provisional

Probab=90.13  E-value=0.33  Score=53.83  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            4799999999999999999999999999999988653

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=90.12  E-value=0.3  Score=50.50  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|+..|..|+++|++|.+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            59999999999999999999999999999853

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.00  E-value=0.42  Score=50.27  Aligned_cols=41  Identities=17%  Similarity=0.376  Sum_probs=36.1

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        15 ~~~l~~~~~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +-++++....|.||| +|+-|...|..|+++|+.|.++++++
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            455666667899999 89999999999999999999999865

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.91  E-value=0.51  Score=43.74  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             CcccEEEECCCh-hHHHHHHHHhhCCCeEEEeccC
Q 009226           21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        21 ~~~DVIIIGaGl-~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            446899999995 6999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=89.87  E-value=0.4  Score=51.67  Aligned_cols=38  Identities=16%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.++|||+|..|+-.|-.+++-|.+|+++|+.+++--.
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~  211 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG  211 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence            35999999999999999999999999999999987553

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.86  E-value=0.42  Score=48.78  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|.|||+|..|+..|..|+..|. +|.++|.++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            368999999999999999999887 899999844

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=89.79  E-value=0.35  Score=53.65  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      -.|+|||+|..|+-.|..|++.|++|+++++.+..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            47999999999999999999999999999998865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02507 glutathione reductase

Probab=89.67  E-value=0.4  Score=52.52  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      -+|+|||+|..|+-.|..|++.|.+|.++++.+++-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            479999999999999999999999999999988753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=89.61  E-value=0.37  Score=50.09  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~   56 (539)
                      -.|+|||+|..|+-+|..|++.|.+ |.++++++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3699999999999999999999997 999998765

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=89.51  E-value=0.5  Score=50.79  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            47999999999999999999999999999998877543

>PRK06116 glutathione reductase; Validated

Probab=89.50  E-value=0.43  Score=51.41  Aligned_cols=36  Identities=11%  Similarity=0.041  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence            579999999999999999999999999999988764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=89.45  E-value=0.43  Score=47.84  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..|+|||+|.+|+-+|..|++.|++|.++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            47999999999999999999999999999998755

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.40  E-value=0.4  Score=48.20  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||.|+-|...|..|+++|++|.++|++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=89.30  E-value=0.42  Score=51.81  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            5899999999999999999999999999998764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=89.24  E-value=0.47  Score=48.57  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|+..|..|+++|++|.+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.01  E-value=0.53  Score=48.06  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|.+.+++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999999999999999999999875

>PRK13748 putative mercuric reductase; Provisional

Probab=88.98  E-value=0.49  Score=52.49  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|+|||+|..|+-.|..|++.|++|+++++++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  304 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL  304 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            4799999999999999999999999999998643

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=88.87  E-value=1.7  Score=45.95  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             cEEeecCCcC---hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEC
Q 009226          270 ALIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG~g---eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~Ad~VI~~  333 (539)
                      ++++|..|..   .+.++|.+.+...|++++.+++|++|..+  ++.+ .|.+.++     .+++||+||..
T Consensus       185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~~vV~a  253 (410)
T PRK12409        185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFDGVVVC  253 (410)
T ss_pred             EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecCEEEEC
Confidence            4667776643   55788889999999999999999999865  4443 3433232     37999999853

>PLN02546 glutathione reductase

Probab=88.70  E-value=0.52  Score=52.33  Aligned_cols=37  Identities=8%  Similarity=-0.029  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -+|+|||+|..|+-.|..|++.|.+|.++|+.+++..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4799999999999999999999999999999887654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=88.66  E-value=0.6  Score=42.74  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~   53 (539)
                      ++.+...|+|||||-.|..-|..|.+.|.+|+|+.+
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            445567899999999999999999999999999954

>TIGR00518 alaDH alanine dehydrogenase

Probab=88.60  E-value=0.53  Score=49.45  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            569999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=88.59  E-value=0.6  Score=42.90  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|-|||.|..|...|..|.++|++|.++|++.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            68999999999999999999999999999874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=88.55  E-value=0.49  Score=51.27  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~   56 (539)
                      +.|.|||+|..|+.+|+.||++  |++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            3599999999999999999998  588999997653

>PRK14694 putative mercuric reductase; Provisional

Probab=88.52  E-value=0.61  Score=50.60  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            479999999999999999999999999999753

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=88.48  E-value=0.6  Score=44.77  Aligned_cols=36  Identities=11%  Similarity=0.068  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .....|+|||+|-.|...|..|.+.|.+|+|++++.
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            344579999999999999999999999999998864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=88.44  E-value=0.7  Score=39.46  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      |||+|.|--|...|-.|.+.|.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999853

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=88.44  E-value=0.47  Score=45.51  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEecc---CCC-CCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~---~~~-~GG~~~s   63 (539)
                      -.|+|||+|.++-+||++++|+-.|-+++|-   |+. +||...|
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT   53 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT   53 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence            4799999999999999999999999999994   343 3666554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=88.41  E-value=0.37  Score=40.69  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +.+...|+|||+|-.+..-+..|.+.|.+|+|+.+..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            3456789999999999999999999999999999875

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=88.22  E-value=0.65  Score=44.44  Aligned_cols=36  Identities=11%  Similarity=0.273  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +.....|+|||||-.|...|..|.++|.+|+|+++.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            445578999999999999999999999999999863

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=87.95  E-value=0.58  Score=41.75  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ++|+|+|..+...|..++..|++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999854

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.94  E-value=0.64  Score=48.79  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~   54 (539)
                      .+|+|||+|-.|+.+|..|++.| .+|++.+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            47999999999999999999999 999999997

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.89  E-value=0.64  Score=47.83  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|--|.+.|..|+++|++|.+++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48999999999999999999999999999864

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.88  E-value=0.75  Score=47.39  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|--|...|..|+++|++|.+++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999964

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=87.82  E-value=0.5  Score=47.67  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CC-eEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~-G~-~VlvlE~~~~   56 (539)
                      .+++.|+|||+|-+|+..|+.+.|. |. +|-++|..++
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            4689999999999999999999887 54 7889987653

>PRK14727 putative mercuric reductase; Provisional

Probab=87.70  E-value=0.72  Score=50.21  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|||+|..|+-.|..|++.|++|+++++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            469999999999999999999999999999754

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=87.62  E-value=0.7  Score=44.66  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.||| +|.-|.+.|..|+++|++|.++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            489997 89999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=87.60  E-value=1.5  Score=48.91  Aligned_cols=52  Identities=23%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-d~VI~  332 (539)
                      ..+.++|.+.+...|++|+++++|++|..+  ++++++|+.. +++  +++| +.||+
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl  272 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL  272 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence            468899999999999999999999999876  6888888653 233  4788 87885

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=87.48  E-value=0.63  Score=49.19  Aligned_cols=32  Identities=22%  Similarity=0.239  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|..|+..|..|+. |++|+.+|.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            48999999999999988885 999999998764

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.46  E-value=0.84  Score=43.57  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~   54 (539)
                      ...|.|||+|--|+.+|..|+++|. ++.++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3579999999999999999999998 69999875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=87.29  E-value=0.46  Score=41.85  Aligned_cols=39  Identities=15%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ........|.|||+|-.|-..|.+|.++|+.|.-+..++
T Consensus         5 ~~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs   43 (127)
T PF10727_consen    5 ATQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS   43 (127)
T ss_dssp             -------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred             ccCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            345567899999999999999999999999998877654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=87.23  E-value=0.62  Score=50.95  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999864

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=87.07  E-value=0.78  Score=46.82  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~   56 (539)
                      .|+|||+|..|.++|..|+..|  .++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            4899999999999999999999  58999999753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=87.05  E-value=0.63  Score=50.94  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|.-|.-.|..|+++|++|.++|+++.
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            499999999999999999999999999998754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.04  E-value=1.2  Score=42.53  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +.....|+|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3344579999999999999999999999999999873

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=86.96  E-value=2.1  Score=45.12  Aligned_cols=28  Identities=36%  Similarity=0.507  Sum_probs=25.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEe
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHL   51 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~Vlvl   51 (539)
                      ||||||||++|+.||+++||.|.+|+++
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            8999999999999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=86.87  E-value=0.84  Score=45.62  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~   55 (539)
                      ...|+|||.|-.|+.+|-.|+++| .+++++|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            357999999999999999999999 7899999753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=86.81  E-value=0.76  Score=49.69  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~   56 (539)
                      -.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            579999999999999999999998 8999998764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=86.79  E-value=0.77  Score=47.95  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~   57 (539)
                      ++..+|+|.||-|..-|..|++|...+ .+++.|||.+.+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            456799999999999999999999986 889999998764

>PTZ00052 thioredoxin reductase; Provisional

Probab=86.75  E-value=0.82  Score=50.05  Aligned_cols=32  Identities=9%  Similarity=-0.005  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      -+++|||+|..|+-.|..|++.|.+|++++++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            37999999999999999999999999999974

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=86.71  E-value=0.65  Score=44.60  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|.|||+|+-|+-.|--.+.+|+.|.++|++.-
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            35799999999999999999999999999999854

>PRK07121 hypothetical protein; Validated

Probab=86.67  E-value=1.8  Score=47.31  Aligned_cols=54  Identities=26%  Similarity=0.345  Sum_probs=43.4

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-d~VI~  332 (539)
                      ...+.++|.+.++..|++|+++++|++|..++ +|++++|+.. +|+  .++| +.||+
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVl  233 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVL  233 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence            45789999999999999999999999998762 5688888763 333  4788 88885

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=86.61  E-value=0.73  Score=50.27  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      -.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            46999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=86.54  E-value=2  Score=46.94  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=44.9

Q ss_pred             ccEEeecCCc---ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEC
Q 009226          269 GALIYPIYGQ---GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD  333 (539)
Q Consensus       269 ga~lyp~gG~---geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~---l~~G~--~i~Ad~VI~~  333 (539)
                      ++.+.|.+|.   +.+.++|++.+.. .|++++++++|..|..+. ++. +.|+   +.+|+  +++||.||+.
T Consensus       171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A  242 (497)
T PRK13339        171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG  242 (497)
T ss_pred             eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence            3455677662   5889999998854 589999999999997642 333 3444   33453  6899999854

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.53  E-value=0.8  Score=49.55  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|+|.|.+|.++|..|.+.|++|.+.|+++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999876

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=86.38  E-value=1.1  Score=39.73  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~   54 (539)
                      ...|+|||+|=+|-.++.+|++.|.+ |.++-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45799999999999999999999987 9999876

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=86.29  E-value=0.74  Score=46.53  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=29.4

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      |.|||.|..|...|..|++.|++|.+++++.
T Consensus         2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            7899999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=86.13  E-value=0.76  Score=50.39  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|.|||+|.-|.-.|..|+++|+.|.++|+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3589999999999999999999999999998864

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=86.10  E-value=2.8  Score=46.69  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=46.5

Q ss_pred             eecCCcC-hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       273 yp~gG~g-eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      ++..++| .|.++|.+.+...|.+|+.++.|++++++  +|+++||..   .+|+  .|+|+.||+
T Consensus       112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL  175 (565)
T TIGR01816       112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL  175 (565)
T ss_pred             ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence            4444444 79999999888899999999999999886  789999864   3565  478999995

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=85.74  E-value=0.87  Score=46.31  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      |.|||+|..|..+|..|+..|. +|.++|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999887 999999984

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=85.63  E-value=0.77  Score=52.58  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||+|..|.-.|..++++|++|.++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999998853

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=85.55  E-value=1  Score=48.15  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             cEEEECCChhHHHHHHHHhh--------------CCCeEEEeccCCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGS   59 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar--------------~G~~VlvlE~~~~~GG   59 (539)
                      .|+|||+|..|+-.|..|+.              .|.+|+++|+.+++.+
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~  224 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG  224 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence            79999999999999999875              5899999999987754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.49  E-value=1.2  Score=47.81  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..|+|+|.|-+|+.+|..|++.|++|.+.|.++..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            46999999999999999999999999999987653

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=85.44  E-value=1  Score=49.23  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La---r~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-.|..++   +.|.+|+++|+++++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~  227 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR  227 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence            46999999999999996554   45999999999998753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=85.37  E-value=0.8  Score=48.46  Aligned_cols=40  Identities=15%  Similarity=0.194  Sum_probs=34.1

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEeccCCC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPF   56 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~-----G~~VlvlE~~~~   56 (539)
                      .++...+||||||+|.+|+-+|+.|+..     .++++++|....
T Consensus        13 ~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~   57 (486)
T COG2509          13 ALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLD   57 (486)
T ss_pred             HHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccc
Confidence            3556789999999999999999999864     789999998544

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.36  E-value=1.1  Score=48.18  Aligned_cols=39  Identities=15%  Similarity=0.137  Sum_probs=34.4

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +|+...--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus         1 ~~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          1 SLMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            355566679999999999999999999999999999875

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=85.36  E-value=0.5  Score=47.25  Aligned_cols=26  Identities=15%  Similarity=0.086  Sum_probs=22.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK   46 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~   46 (539)
                      ...+++|||+|..||+.|..+.+.+.
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~   27 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYH   27 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhh
Confidence            34689999999999999999988653

>PRK06223 malate dehydrogenase; Reviewed

Probab=85.08  E-value=1.2  Score=45.46  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~   56 (539)
                      ..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999999654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=85.07  E-value=0.85  Score=52.18  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||+|..|.-.|..++++|++|.++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=85.05  E-value=1  Score=45.81  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999999999999874

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.97  E-value=1  Score=49.27  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|.|.+|++++..|.+.|.+|.+.|.++
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            59999999999999999999999999999753

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=84.92  E-value=0.95  Score=49.40  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .-.|+|+|+|..|+.|+..+...|.+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.90  E-value=1  Score=48.89  Aligned_cols=34  Identities=12%  Similarity=-0.184  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|+|+|.|-+|.++|..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.79  E-value=1.3  Score=47.74  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|-.|.++|..|++.|.+|.+.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            358999999999999999999999999999765

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=84.71  E-value=3.1  Score=44.45  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ++||+|||+|++|+++|+.|+++|++|+++|++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999874

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=84.64  E-value=2  Score=45.42  Aligned_cols=42  Identities=17%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ++.+.++....|+|+|+ |..|..++..|.+.|++|..+.++.
T Consensus        52 ~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         52 SFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            56677777778999996 9999999999999999999998864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.46  E-value=1.3  Score=48.20  Aligned_cols=40  Identities=28%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.+.+.++  .|.|+|.|-+|.++|..|.+.|.+|.+.|++.
T Consensus         9 ~~~~~~~~--~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141          9 ALPQELSG--RVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             hcccccCC--eEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            34555555  39999999999999999999999999999754

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=84.44  E-value=2.1  Score=34.67  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEecc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP   53 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~   53 (539)
                      ...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35799999999999999999998 789999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=84.38  E-value=3.1  Score=44.57  Aligned_cols=50  Identities=22%  Similarity=0.334  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ++-+.|.+.++..|++++.+++|+++..+  ++++++|+ ++|+++.|+.||.
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~  158 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL  158 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence            55566778888899999999999999876  56666665 5788899999984

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=84.30  E-value=1.1  Score=45.29  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||.|.-|...|..|++.|++|.++|++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999875

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=84.24  E-value=1.1  Score=51.79  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~   56 (539)
                      ..|||||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998765

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=84.05  E-value=1.3  Score=47.21  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .-.|+|+|+|.-|+.+|..|...|.+|+++|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            35799999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=84.04  E-value=1.5  Score=47.18  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      -.+|+|||+|-++-..|..|++.|.+|.++=|++-+
T Consensus       175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            468999999999999999999999999999887654

>PRK06175 L-aspartate oxidase; Provisional

Probab=83.87  E-value=3.8  Score=43.98  Aligned_cols=39  Identities=10%  Similarity=0.220  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .++||||||+|.+||.||+.++ .|.+|+++||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999975 79999999999988775

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=83.67  E-value=1.9  Score=38.73  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~   55 (539)
                      ...++|||+|..|...|..|++.| ++|.+++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            357999999999999999999996 8999999874

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=83.66  E-value=1.2  Score=47.78  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ...|.|+|-|.+|+++|..|.+.|.+|.+.|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            356999999999999999999999999999987766

>PLN02256 arogenate dehydrogenase

Probab=83.63  E-value=1.6  Score=44.63  Aligned_cols=35  Identities=14%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|.|||.|.-|...|..|++.|++|.++++++
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            34579999999999999999999999999999875

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=83.46  E-value=1.2  Score=45.22  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ..|.|||+|.-|.-.|..++.+|++|.++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46899999999999999999988999999998

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.39  E-value=1.3  Score=47.29  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|.|||-|.+|.++|..|.+.|++|...|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999997653

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=83.29  E-value=2  Score=45.00  Aligned_cols=38  Identities=18%  Similarity=0.269  Sum_probs=32.8

Q ss_pred             CCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           18 IEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        18 l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +......|+|.|+ |.-|..++.+|.+.|++|+.+++..
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            3445567999998 9999999999999999999999753

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=83.23  E-value=3  Score=46.64  Aligned_cols=54  Identities=22%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEcCE-EEE
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL  332 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad~-VI~  332 (539)
                      ...+...|.+.++..|++|+++++|++|.+++ +|+++||... +|+  .++|++ ||+
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVil  269 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVIL  269 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEE
Confidence            35677778888888999999999999999863 6889898653 343  377874 774

>PRK06847 hypothetical protein; Provisional

Probab=83.11  E-value=3.7  Score=42.71  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ...||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4579999999999999999999999999999998753

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=82.98  E-value=1.7  Score=42.97  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...++|+|+|+-+...|..++..|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            46899999999999999999999999999998765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=82.96  E-value=1.6  Score=44.10  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|+|||+|-+|.++|..|++.|. +|.+++|+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            579999999999999999999996 799999874

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=82.96  E-value=1.2  Score=51.23  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||+|.-|.-.|..++++|++|.++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4599999999999999999999999999998764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=82.84  E-value=3.8  Score=40.71  Aligned_cols=53  Identities=15%  Similarity=0.099  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-----------~G~~i~Ad~VI~  332 (539)
                      .++.+.|.+.+...|+++++++.|..+..++ ++++.+|.+.           +..+++|+.||.
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~  167 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD  167 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence            5788889998999999999999999998762 4477777643           124789999984

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=82.83  E-value=1.2  Score=45.43  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+.|+|+|--|+..|+.|+++|..|+++=|.++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            489999999999999999999988888877664

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=82.79  E-value=3.7  Score=44.02  Aligned_cols=38  Identities=26%  Similarity=0.521  Sum_probs=36.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009226           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~~   61 (539)
                      ||||||+|++|+.||+.++++| .+|+||||++..||..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            8999999999999999999999 9999999999998864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=82.73  E-value=3.5  Score=43.33  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ...+||+|||||++|+++|+.|+++|.+|+++|+++..
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~   41 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP   41 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence            45689999999999999999999999999999998753

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.71  E-value=1.6  Score=44.32  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|+|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999984

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=82.39  E-value=1.3  Score=50.59  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La-r~G~~VlvlE~~~~   56 (539)
                      ..|.|||+|..|.-.|..++ ++|++|.++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            45999999999999999998 69999999999853

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=82.38  E-value=1.3  Score=44.57  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      .-|+|||.|+-|...|..|.++|+.|.++.+....+......
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~   45 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL   45 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence            469999999999999999999999999999988776555544

>PRK07831 short chain dehydrogenase; Provisional

Probab=82.35  E-value=2.4  Score=41.63  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=28.5

Q ss_pred             cccEEEECC-C-hhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGa-G-l~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..-++|.|+ | --|..+|..|++.|.+|++.+++.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            356999997 5 479999999999999999988763

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=82.32  E-value=1.8  Score=44.82  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~   54 (539)
                      ...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3579999999999999999999998 89999984

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=82.31  E-value=2.3  Score=40.10  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009226           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        21 ~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ....++|+|+ |-.|..+|..|++.|++|.++.|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3457999995 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=82.24  E-value=2.1  Score=44.07  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~   57 (539)
                      ..|.|||+|..|...|..|+..|. +|.++|.++..
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            579999999999999999999996 89999998754

>PLN02712 arogenate dehydrogenase

Probab=81.90  E-value=2.3  Score=48.26  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||.|.-|-..|..|.+.|++|.++++++
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   85 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD   85 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3569999999999999999999999999999874

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=81.88  E-value=3.7  Score=32.54  Aligned_cols=41  Identities=17%  Similarity=0.189  Sum_probs=33.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G  322 (539)
                      .++.+.+.+..+..|.++++++.|++|..+. ++ +. |+++||
T Consensus        40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~~g   80 (80)
T PF00070_consen   40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLEDG   80 (80)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEETS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEecC
Confidence            4677778888899999999999999998772 44 55 888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=81.72  E-value=1.8  Score=44.04  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|++.|.  +|.+++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            369999999999999999999995  899999874

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=81.70  E-value=1.8  Score=44.02  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999875

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=81.60  E-value=5.1  Score=45.20  Aligned_cols=60  Identities=28%  Similarity=0.408  Sum_probs=45.0

Q ss_pred             eecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          273 YPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       273 yp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      ++..|.   ..+..+|.+.++..|++++.+++|.+|..++.++++++|++   .+|+  +++||.||.
T Consensus       223 ~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn  290 (627)
T PLN02464        223 VYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN  290 (627)
T ss_pred             EecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence            444453   47888999999999999999999999987521366777765   2444  589999995

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.50  E-value=1.5  Score=47.04  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|+|+|+|-.|..+|..|.+.|++|.++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            699999999999999999999999999999654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=81.47  E-value=1.4  Score=50.40  Aligned_cols=33  Identities=30%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La-r~G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|.-.|..++ ++|++|.++|.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            45999999999999999998 8999999999865

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=81.39  E-value=5.7  Score=44.21  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ||||||+|++|+.||+.++++|.+|+++||....||..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            89999999999999999999999999999998877743

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=81.34  E-value=1.6  Score=47.36  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+|-|||.|.-|...|..|+++|++|.+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3799999999999999999999999999998654

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=81.34  E-value=5.7  Score=44.33  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~   60 (539)
                      |.++||||||+|.+||.||+.++++|  .+|+|+||....||.
T Consensus         1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            35689999999999999999999875  899999999877764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=81.20  E-value=2.1  Score=39.79  Aligned_cols=30  Identities=23%  Similarity=0.217  Sum_probs=27.8

Q ss_pred             EEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009226           25 LIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~   54 (539)
                      |+|||+|-.|+..|..|++.|.. +.++|..
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            89999999999999999999984 9999975

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.18  E-value=1.7  Score=47.54  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus         9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            59999999999999999999999999999865

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=81.16  E-value=5.4  Score=44.51  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=46.9

Q ss_pred             EeecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       272 lyp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      +++..++ ..|.++|.+.+...|.+++.++.+.+++.+ ++|+++||..   .+|+  .|+|+.||+
T Consensus       118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  183 (570)
T PRK05675        118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSKATVL  183 (570)
T ss_pred             EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence            3444444 488999998888899999999999999875 2688999864   3565  478999995

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=81.16  E-value=1.5  Score=47.51  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|||+|.+|+-.|..|++.+++|.++.+++
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            579999999999999999999999999999865

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=80.97  E-value=4.2  Score=45.18  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=42.6

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad-~VI~  332 (539)
                      ...|.+.|.+.++..|+++++++.|++|+.+  +++++||... +|+  .+.|+ .||+
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl  263 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL  263 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence            3578889989999999999999999999987  7889998763 454  47785 4774

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=80.93  E-value=5.3  Score=41.64  Aligned_cols=40  Identities=20%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      +.++||||||+|+.|+++|+.|++.|.+|+++|++.-.+|
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g   41 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG   41 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence            4578999999999999999999999999999999887663

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=80.90  E-value=2.1  Score=44.44  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~   54 (539)
                      ...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3569999999999999999999997 78889985

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=80.85  E-value=2.1  Score=37.78  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=28.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~   54 (539)
                      ..|+|+|+|-.|+.+|..|++.|. ++.++|..
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            469999999999999999999998 68888864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=80.71  E-value=4.6  Score=42.48  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~   56 (539)
                      .|||+|||||++||++|..|+++|  .+|+++|+++.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            389999999999999999999996  99999999874

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=80.53  E-value=1.9  Score=43.58  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|+|||+|-.|..+|..|+..|.+|.+++++.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=80.51  E-value=2.1  Score=42.73  Aligned_cols=32  Identities=13%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ..++|+|+|-.|..+|..|++.|.+|.+++|+
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK07045 putative monooxygenase; Reviewed

Probab=80.45  E-value=5  Score=42.08  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            35689999999999999999999999999999998753

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=80.37  E-value=2.7  Score=34.47  Aligned_cols=31  Identities=29%  Similarity=0.449  Sum_probs=27.7

Q ss_pred             EEEECCChhHHHHHHHHhhCC---CeEEEe-ccCC
Q 009226           25 LIVIGTGLPESVISAAASASG---KSVLHL-DPNP   55 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G---~~Vlvl-E~~~   55 (539)
                      +.|||+|--|.+.|..|.++|   .+|.+. ++++
T Consensus         2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence            679999999999999999999   899966 7763

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=80.35  E-value=6  Score=39.23  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI~  332 (539)
                      .++-+.|.+.++..|+++++++.|+++..+  ++++ .|.+. ++++++||.||.
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~  142 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG  142 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence            456677888888899999999999999876  4443 34333 456899999885

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=80.32  E-value=1.9  Score=50.93  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+|||||+|..|+-+|..+.|.|.+|+++.+++.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~  481 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK  481 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence            5799999999999999999999999999998754

>TIGR00292 thiazole biosynthesis enzyme

Probab=80.23  E-value=5.9  Score=39.28  Aligned_cols=52  Identities=19%  Similarity=0.135  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCC--cEEEEEeCC-----------CcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g--~~~gV~l~~-----------G~~i~Ad~VI~  332 (539)
                      .++.+.|.+.+...|++++.++.|+.+..+  ++  ++.||.+..           ..+++|+.||.
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd  164 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD  164 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence            478888888888999999999999999876  34  678887632           24689999884

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	539
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		3e-30
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		6e-30
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-29
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-29
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		1e-29
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-29
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-29
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		3e-22

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 168/371 (45%), Gaps = 45/371 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539
Query: 465 AKPTLLWSALY 475
            KP LLW ALY
Sbjct: 540 -KPRLLW-ALY 548

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 168/371 (45%), Gaps = 45/371 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S L+ D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539
Query: 465 AKPTLLWSALY 475
            KP LLW ALY
Sbjct: 540 -KPRLLW-ALY 548

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 163/330 (49%), Gaps = 37/330 (11%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
            G+     +L+ DPS+ VP  +  + Q ++
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKAGQVIR 301

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 185/408 (45%), Gaps = 48/408 (11%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 10  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 64
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 65  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 113
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 114 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 172
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 173 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 225
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 226 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 283
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 284 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 324
Query: 381 SNF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
           SN   L I  P+S    + + I V  +     VC  G ++   S + +
Sbjct: 325 SNADSLQIIIPQSQLGRK-SDIYVAIVSDAHNVCSKGHYLAIISTIIE 371

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  125 bits (314), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 185/408 (45%), Gaps = 48/408 (11%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 8   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 62
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 63  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 111
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 112 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 170
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 171 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 223
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 224 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 281
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 282 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 322
Query: 381 SNF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
           SN   L I  P+S    + + I V  +     VC  G ++   S + +
Sbjct: 323 SNADSLQIIIPQSQLGRK-SDIYVAIVSDAHNVCSKGHYLAIISTIIE 369

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 163/361 (45%), Gaps = 61/361 (16%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL   +LT+  N+   P   
Sbjct: 21  YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL---NLTNLYNTFK-PKEN 76
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P         S Y         R++N+D+  P+ +    + V ++ K+  ++YLE+  +
Sbjct: 77  IP---------SKYGEN------RHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVV 120
Query: 143 DATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
           + +++        L ++  +  VP +         L LMEKN+   F++ V         
Sbjct: 121 EGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVS-------E 173
Query: 195 EENNVRISEEDLDSPFA----EFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250
            + N R + ++LD P+     E      L       + +A+A+   D  + +    T   
Sbjct: 174 WDANKRNTWDNLD-PYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLT--- 229
Query: 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN 310
           + R+ LY  SI  F  +    IYP+YG G +P+ F R  A+ G  ++L   V+  + D +
Sbjct: 230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD 287
Query: 311 SGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC 370
           +    G++ + G+     K++ DPS+ +          L+   +        G+V R IC
Sbjct: 288 N-KVCGIKSSDGEIAYCDKVICDPSYVM---------HLKNKIKKI------GQVIRCIC 331
Query: 371 I 371
           I
Sbjct: 332 I 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	539
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	3e-80
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	2e-75
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	3e-74
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	1e-15
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-69
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  257 bits (657), Expect = 3e-80
 Identities = 93/428 (21%), Positives = 177/428 (41%), Gaps = 49/428 (11%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
            T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +   
Sbjct: 9   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L       ++++ +  + Y++F
Sbjct: 69  KEERESKFG---------------KDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDF 112

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    +
Sbjct: 113 KQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGL 171

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            + +        E   K  L +  K  + +A+A+   D  + +     R    R+ LY  
Sbjct: 172 DLDKN----TMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQ 224

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+ 
Sbjct: 225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK- 281

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP- 378
                  +  ++ DP++  P    S+ Q                +V R ICI    +   
Sbjct: 282 TKLGTFKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPVPNT 324

Query: 379 -DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
            +  +  +I P   L  +    I V  +     VC  G ++   S    E ++    L  
Sbjct: 325 SNADSLQIIIPQSQLGRKS--DIYVAIVSDAHNVCSKGHYLAIIST-IIETDKPHIELEP 381

Query: 438 ALSALQKL 445
           A   L  +
Sbjct: 382 AFKLLGPI 389

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  245 bits (626), Expect = 2e-75
 Identities = 104/498 (20%), Positives = 191/498 (38%), Gaps = 77/498 (15%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
                +   +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL++ +L +  
Sbjct: 12  ENLYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTF 71

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGA 133
                  S                        R++N+D+  P+ +    + V ++ K+  
Sbjct: 72  KPKENIPSKYG-------------------ENRHWNVDL-IPKFILVGGNLVKILKKTRV 111

Query: 134 SHYLEFKSIDATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV 185
           ++YLE+  ++ +++        L ++  +  VP +         L LMEKN+   F++ V
Sbjct: 112 TNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYV 171

Query: 186 QGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVL 245
               +   +  +N+    +       E      L       + +A+A+   D  + +   
Sbjct: 172 SEWDANKRNTWDNL----DPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQ--- 224

Query: 246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL 305
                + R+ LY  SI  F       IYP+YG G +P+ F R  A+ G  ++L   V+  
Sbjct: 225 PAYLTLERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDF 282

Query: 306 LTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
           + D +     G++ + G+     K++ DPS+ +                  +     G+V
Sbjct: 283 VFDDD-NKVCGIKSSDGEIAYCDKVICDPSYVMHLK---------------NKIKKIGQV 326

Query: 366 ARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA 423
            R ICI  + +      ++  +I P   L  +    I +  +     V   G ++   SA
Sbjct: 327 IRCICILSNPIPETNQTNSCQIIIPQNQLNRKS--DIYINLVSFQHGVTLKGKYIAIVSA 384

Query: 424 LCDEVNQGKKLLHAALSALQKL-------------LVTGTAGN----SSTAQSEDMEEAK 466
              E N   K +   L  L  +                  A N    SS   +   E A 
Sbjct: 385 TV-ETNNPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADNIFVTSSYDATSHFETAT 443

Query: 467 PTL--LWSALYIQDLSLG 482
             L  +W  L+ Q L+  
Sbjct: 444 NDLLQIWENLWGQKLNFD 461

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  247 bits (631), Expect = 3e-74
 Identities = 100/453 (22%), Positives = 176/453 (38%), Gaps = 56/453 (12%)

Query: 31  GLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSD 90
            +P          S   V   +      +  +  S  + +  +      +        + 
Sbjct: 155 EIPAEQSQCPGPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITY 214

Query: 91  VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
            +I            R FN+D+   ++L+     +DL++KS  S Y EFK+I        
Sbjct: 215 SQIIK--------EGRRFNIDLV-SKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFR- 264

Query: 151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF 210
           +  +  VP SRA +F  K L ++EK  LM+F      +    +              + F
Sbjct: 265 EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYR-------AYEGTTF 317

Query: 211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGA 270
           +E+L   KL   ++  VL++IAM             T DG+     +   +GR+ N    
Sbjct: 318 SEYLKTQKLTPNLQYFVLHSIAMTSETTS------CTVDGLKATKKFLQCLGRYGNT--P 369

Query: 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330
            ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   
Sbjct: 370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHF 429

Query: 331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIF 387
           +++ S+    + +                    +++R + IT  S+     D    ++  
Sbjct: 430 IIEDSYLSENTCSRV---------------QYRQISRAVLITDGSVLRTDADQQVSILTV 474

Query: 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLV 447
           P        V   RV++L  +   C  G ++++ +  C      ++ L   +  L     
Sbjct: 475 PAEEPGSFAV---RVIELCSSTMTCMKGTYLVHLT--CMSSKTAREDLERVVQKL----- 524

Query: 448 TGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLS 480
                  +  ++E+ +  KP LLW+  +    S
Sbjct: 525 ---FTPYTEIEAENEQVEKPRLLWALYFNMRDS 554

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score = 79.2 bits (194), Expect = 1e-15
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 6   PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65

Query: 80  SSVCPD---------------PLYS------DVEISNYASRLLSQHPRNFNLDVSGPRVL 118
           + V  +               PL S       VE+  YAS+ L +              +
Sbjct: 66  NDVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASV 125

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
             A  A        +      + +      +  A+    P   ++   + +    +K   
Sbjct: 126 TSAQSAEAAEAAETSCLPTAVEPLSMG-SCEIPAEQSQCPGPESSPEVNDAEATGKKEN- 183

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP 220
                      S  E    NV   +++ ++P    +T  ++ 
Sbjct: 184 -------SDAKSSTEEPSENVPKVQDNTETPKKNRITYSQII 218

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  228 bits (582), Expect = 2e-69
 Identities = 102/426 (23%), Positives = 179/426 (42%), Gaps = 55/426 (12%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
              +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +        
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L      V ++L +  + YL+F
Sbjct: 64  PPETM------------------GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDF 104

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K ++ +F+     K+  VP +         +G+ EK +  +F   V      D       
Sbjct: 105 KVVEGSFVY-KGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF--- 160

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
               +  ++   +   K  L   +     +A+A+   D  + +      + INR+ LY+ 
Sbjct: 161 -EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ---PCLETINRIKLYSE 216

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ 
Sbjct: 217 SLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK- 271

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-- 377
           + G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K  
Sbjct: 272 SEGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNT 313

Query: 378 PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
            D ++  +I P   +  +    I V  +     V   G ++   S    E    +K +  
Sbjct: 314 NDANSCQIIIPQNQVNRKS--DIYVCMISYAHNVAAQGKYIAIASTTV-ETTDPEKEVEP 370

Query: 438 ALSALQ 443
           AL  L+
Sbjct: 371 ALGLLE 376

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 79/569 (13%), Positives = 165/569 (28%), Gaps = 186/569 (32%)

Query: 2   TGNESESELPVP---PYPPIEPTAFDL-----IVI----GTGLPESVISAAASASGKSVL 49
             N+  ++  V    PY  +     +L     ++I    G+G  ++ ++     S K   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDVCLSYKVQC 178

Query: 50  HLDPNPFY---GSHFSSLSI----ADLTHFL--NSHSTPSSVCPDPLYSDVEISNYASRL 100
            +D   F+    +  S  ++      L + +  N  S         L     I     RL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRL 237

Query: 101 LSQHPRNFNL----DVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS 156
           L   P    L    +V   +      +A +L  K                +         
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAW----NAFNLSCK--------------ILLTTRFK---Q 276

Query: 157 VPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFL-- 214
           V D  +A                        H+SLD        ++ +++ S   ++L  
Sbjct: 277 VTDFLSA--------------------ATTTHISLDHHSMT---LTPDEVKSLLLKYLDC 313

Query: 215 TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY--------NSSIGRFQN 266
               LP ++ +     +++      ++E +   RDG+     +         + I    N
Sbjct: 314 RPQDLPREVLTTNPRRLSI------IAESI---RDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 267 ALG---------AL-IYP----IYGQ------GELPQAFCRRAAVKGCLYVLRMPVISLL 306
            L           L ++P    I          ++ ++       K   Y       SL+
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-------SLV 417

Query: 307 T-DQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
                  +     +          + L+    +     + H+ + + +      D+    
Sbjct: 418 EKQPKESTI---SI--------PSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDL- 464

Query: 366 ARGICITRSSLKPDLSNFLVIFPPRSLFP----EQVTSIRVLQLGGNLAVCPLGMFVLYF 421
                     + P L  +        L      E++T  R++ L  +        F+   
Sbjct: 465 ----------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFR------FL--- 503

Query: 422 SALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSL 481
                     +K+ H             TA N+S +    +++ K    +   YI D   
Sbjct: 504 ---------EQKIRH-----------DSTAWNASGSILNTLQQLK---FYKP-YICDNDP 539

Query: 482 GYCIMVTKLPCF-----QDVIRKKHYVLI 505
            Y  +V  +  F     +++I  K+  L+
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 53/381 (13%), Positives = 106/381 (27%), Gaps = 104/381 (27%)

Query: 51  LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI-SNY-ASR--------- 99
           L  N  Y    S +        + +         D LY+D ++ + Y  SR         
Sbjct: 87  LRIN--YKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 100 -LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP 158
            LL   P   N+ + G             +L SG       K+  A  +  +    C + 
Sbjct: 143 ALLELRP-AKNVLIDG-------------VLGSG-------KTWVALDVCLSYKVQCKMD 181

Query: 159 DSRAAIF------KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE 212
                IF       +    ++E  Q +  +++     S  +   N +++    + +    
Sbjct: 182 F---KIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN-IKLRIHSIQAELRR 236

Query: 213 FLTKMKLPHKIKSIVLYAIAMAD--YDQEVSEY-------VLKTRDGINRLALYNSSIGR 263
            L      + +  +VL          + +           +L TR            +  
Sbjct: 237 LLKSKPYENCL--LVL------LNVQNAKAWNAFNLSCKILLTTRF---------KQV-- 277

Query: 264 FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ 323
             + L A                        L  L      L                 +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PRE 321

Query: 324 DILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--S 381
            + ++   L         +A S +    ++  +   +   K+   I  + + L+P     
Sbjct: 322 VLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRK 373

Query: 382 NF--LVIFPPRSLFPEQVTSI 400
            F  L +FPP +  P  + S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	539
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.97
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.91
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.91
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.9
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.89
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.87
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.87
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.86
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.86
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.86
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.86
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.85
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.81
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.76
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.74
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.72
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.71
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.7
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.68
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.59
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.57
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.56
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.55
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.51
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.49
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.42
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.41
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.36
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.33
3dme_A	369	Conserved exported protein; structural genomics, P	99.11
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.11
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.0
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.99
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.98
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.95
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.91
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.9
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.88
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.88
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.86
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.85
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.85
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.78
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.73
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.72
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.69
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.49
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.47
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.45
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.42
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.37
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.36
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.35
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.32
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.31
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.3
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.27
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.27
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.27
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.26
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.25
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.23
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.22
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.21
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.21
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.21
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.21
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.19
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.19
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.19
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.18
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.17
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.17
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.15
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.15
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.14
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.14
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.13
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.13
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.13
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.13
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.13
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.12
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.12
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.11
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.1
4dna_A	463	Probable glutathione reductase; structural genomic	98.1
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.1
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.1
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.1
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.09
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.09
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.08
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.08
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.06
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.06
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.04
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.04
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.03
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.03
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.03
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.03
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.03
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.03
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.02
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.02
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.01
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.01
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.0
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.99
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.99
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.98
3atr_A	453	Conserved archaeal protein; saturating double bond	97.98
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.98
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.98
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.97
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.97
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.97
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.97
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.97
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.96
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.96
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.95
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.95
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.95
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.95
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.95
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.94
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.93
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.93
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.93
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.92
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.92
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.9
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.9
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.9
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.89
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.88
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.87
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.86
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.86
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.86
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.85
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.84
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.83
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.83
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.83
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.83
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.82
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.82
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.81
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.81
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.81
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.8
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.79
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.77
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.76
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.76
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.75
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.74
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.68
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.66
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.66
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.66
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.65
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.65
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.64
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.62
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.62
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.6
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.6
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.6
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.59
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.58
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.57
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.57
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.52
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.48
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.45
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.44
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.44
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.43
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.43
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.36
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.35
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.35
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.35
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.35
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.34
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.34
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.31
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.22
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.19
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.14
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.12
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.87
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.8
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.79
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.69
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.44
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.31
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.3
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.16
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.95
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.86
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.77
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.45
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.41
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.39
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.3
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.3
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.21
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.19
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.17
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.17
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.97
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	93.8
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.77
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.75
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	93.67
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.42
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.39
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.32
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.24
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	93.23
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.22
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.15
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.07
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.02
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	92.94
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	92.93
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	92.91
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.84
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.83
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	92.74
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.74
1ojt_A	482	Surface protein; redox-active center, glycolysis,	92.71
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.7
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.69
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.68
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.58
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	92.58
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.54
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.49
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	92.43
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	92.41
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.41
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.31
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.22
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	92.22
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	92.2
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	92.1
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	92.09
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.09
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	92.06
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	92.05
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.94
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.93
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	91.91
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.9
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	91.89
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	91.88
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	91.87
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.87
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.83
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	91.8
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.78
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	91.76
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	91.75
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	91.75
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	91.74
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.74
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	91.7
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	91.68
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.67
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	91.62
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	91.61
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.61
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	91.6
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.58
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	91.51
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.5
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	91.28
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.26
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.21
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.08
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	90.95
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	90.9
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.9
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.73
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.73
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	90.72
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	90.69
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	90.68
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	90.66
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.66
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.64
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	90.54
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.48
2cul_A	232	Glucose-inhibited division protein A-related PROT	90.46
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.43
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	90.35
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	90.35
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	90.31
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.06
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	89.94
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	89.92
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	89.85
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.85
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.83
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.81
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	89.81
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	89.8
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	89.78
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	89.75
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	89.74
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	89.74
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.73
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.67
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	89.64
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.54
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	89.53
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	89.5
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.46
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.43
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	89.41
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	89.39
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	89.33
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	89.32
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.17
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	89.16
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	89.06
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	89.03
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	88.99
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	88.98
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	88.89
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	88.83
3atr_A	453	Conserved archaeal protein; saturating double bond	88.76
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.57
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	88.52
3r9u_A	315	Thioredoxin reductase; structural genomics, center	88.52
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.49
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	88.47
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	88.47
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.47
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.45
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	88.41
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.39
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	88.35
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	88.33
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	88.31
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	88.22
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	88.18
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.16
1fec_A	490	Trypanothione reductase; redox-active center, oxid	88.09
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.09
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	88.08
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	88.01
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	87.98
3tl2_A	315	Malate dehydrogenase; center for structural genomi	87.94
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	87.75
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	87.66
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	87.6
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	87.55
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	87.54
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	87.53
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	87.45
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	87.39
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.18
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	87.15
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	87.14
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	87.11
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.06
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	87.04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	87.01
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	87.01
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	86.98
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	86.94
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	86.87
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	86.86
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.8
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.78
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	86.73
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	86.69
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	86.63
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	86.43
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	86.42
4dna_A	463	Probable glutathione reductase; structural genomic	86.34
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.28
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	86.21
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	86.19
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	86.15
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.1
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	86.04
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.92
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	85.87
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	85.83
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	85.8
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	85.78
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	85.78
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.78
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	85.73
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	85.65
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	85.6
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	85.55
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	85.52
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	85.41
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	85.4
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	85.38
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	85.29
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.24
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	85.16
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	85.03
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	85.01
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	84.99
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	84.96
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	84.92
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	84.9
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	84.8
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	84.6
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	84.58
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	84.54
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	84.38
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	84.35
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	84.33
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	84.3
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	84.28
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	84.27
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	84.22
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	84.17
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	84.1
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	84.07
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	84.04
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	84.03
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	83.9
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	83.85
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	83.79
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	83.69
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	83.68
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	83.6
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	83.47
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	83.39
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	83.22
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	83.13
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	83.12
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	83.06
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	83.05
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	82.89
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	82.83
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	82.83
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	82.62
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	82.6
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	82.52
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	82.41
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	82.4
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	82.37
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	82.35
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	82.34
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	82.29
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.28
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	82.26
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	82.08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	82.04
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	82.01
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	81.94
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	81.83
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	81.56
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	81.56
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	81.49
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	81.44
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	81.43
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	81.43
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	81.39
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	81.31
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	81.24
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	81.18
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	80.87
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	80.66
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	80.59
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	80.58
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	80.58
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	80.54
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	80.32
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	80.31
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	80.3

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=1.5e-57  Score=498.15  Aligned_cols=418  Identities=31%  Similarity=0.518  Sum_probs=326.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCC-----------------
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV-----------------   82 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~-----------------   82 (539)
                      +.+|||+|||||+.|++.|++|++.|++|+|+|+|++|||.+.++++.++.+|+...+.....                 
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   85 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchhh
Confidence            457999999999999999999999999999999999999999999999999998766531000                 


Q ss_pred             ----CCCCccccccccccc-------------------------------------------------------------
Q 009226           83 ----CPDPLYSDVEISNYA-------------------------------------------------------------   97 (539)
Q Consensus        83 ----~~~~~~~~~~~~~~~-------------------------------------------------------------   97 (539)
                          .....+++.++.++.                                                             
T Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (650)
T 1vg0_A           86 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  165 (650)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             ccccccccccccceeEeecccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                000001111000000                                                             


Q ss_pred             -------------------------------------------cc-----cccCCCCCeEEecCCCEEEecChHHHHHHh
Q 009226           98 -------------------------------------------SR-----LLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (539)
Q Consensus        98 -------------------------------------------~~-----~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~  129 (539)
                                                                 .+     .+.+..|+|+||+. |+++++++.++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL~-PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          166 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEeeC-CeeeeCCcHHHHHHH
Confidence                                                       00     00125799999995 999999999999999


Q ss_pred             cCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCc
Q 009226          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (539)
Q Consensus       130 ~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (539)
                      ++|+.+|++|+.++..|++. +|+++++|+++.++|+++.+++.+|+.+|||++.+.++.. .+      ..+..+...|
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~-~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p------~~~~~~d~~S  316 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HP------DEYRAYEGTT  316 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CH------HHHHTTTTSB
T ss_pred             HcCCcceeeEEEccceEEec-CCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-Ch------HHHhhhccCC
Confidence            99999999999999988874 8899999999999999999999999999999999887532 11      1123566899


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHH
Q 009226          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (539)
Q Consensus       210 ~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~  289 (539)
                      +.+||+++++++.++.++.+++++.....      .++..++.++..|+.++++||.+  +++||+||+|+|+|+|||++
T Consensus       317 ~~d~L~~~~ls~~L~~~L~~~lal~~~~~------~pa~~~l~~i~~~l~sl~~yg~s--g~~yp~GG~g~L~qaL~r~~  388 (650)
T 1vg0_A          317 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMC  388 (650)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSSS--SEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCC------CchhHHHHHHHHHHHHHHhhccC--ceEEeCCchhHHHHHHHHHH
Confidence            99999999999999999988776653221      24667777888999999999863  48999999999999999999


Q ss_pred             HHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEE
Q 009226          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGI  369 (539)
Q Consensus       290 a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i  369 (539)
                      +++||+|+||++|++|.++.++|++++|++.+|++++||+||++|.++ +...   .           .+...++++|++
T Consensus       389 ~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~l-p~~~---~-----------~~~~~~~v~R~i  453 (650)
T 1vg0_A          389 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL-SENT---C-----------SRVQYRQISRAV  453 (650)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGB-CTTT---T-----------TTCCCEEEEEEE
T ss_pred             HHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhc-CHhH---h-----------ccccccceEEEE
Confidence            999999999999999998731288999988889999999999987765 3211   0           111246799999


Q ss_pred             EEecCCCCCCC---CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeeccccchHHHHHHHHHHHHhhh
Q 009226          370 CITRSSLKPDL---SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLL  446 (539)
Q Consensus       370 ~I~~~~l~~~~---~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~  446 (539)
                      +|+++|+.+..   ..+++++|+.+ +  ..++||++++|++++.||+|++|+|++|..  ..+++++|++++++|+...
T Consensus       454 ~i~~~pi~~~~~~~~~~~iiiP~~~-g--~~~~V~i~~~Ss~~~~cP~G~~Vv~lst~~--~~~~~~eLe~~l~~L~~~~  528 (650)
T 1vg0_A          454 LITDGSVLRTDADQQVSILTVPAEE-P--GSFAVRVIELCSSTMTCMKGTYLVHLTCMS--SKTAREDLERVVQKLFTPY  528 (650)
T ss_dssp             EEESSCSSCCSCCCCCEEEEECCSS-T--TSCCEEEEEECGGGTSSCTTCEEEEEEEEC--SSCHHHHHHHHHHHHCBSC
T ss_pred             EEecCCCCCcCCCcceEEEEccCcc-C--CCCCEEEEEeCCCCCCCCCCCEEEEEEeec--CCCHHHHHHHHHHHHhccc
Confidence            99999986542   34788888765 2  367899999999999999999999999873  3588999999999998532


Q ss_pred             hcCCCCCCCCccccccccCCcceEeEEeEEEEcCcc
Q 009226          447 VTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLG  482 (539)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~p~ilw~~~~~~~~~~~  482 (539)
                       .       +++.++.+..+|+|||++||+|.+..+
T Consensus       529 -~-------~~~~~~~~~~~~~vLws~~~~~~~~~~  556 (650)
T 1vg0_A          529 -T-------EIEAENEQVEKPRLLWALYFNMRDSSD  556 (650)
T ss_dssp             -S-------CCC-------CCBEEEEEEEEEEECTT
T ss_pred             -c-------ccccccccccCCceEEEEEEEeecccc
Confidence             1       111223356789999999999987653

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.9e-54  Score=458.29  Aligned_cols=378  Identities=24%  Similarity=0.423  Sum_probs=309.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      +++.|||||||||++|+++|+.|+++|++|+|+|+++++||++++++..++..|... +.++       .          
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~-g~~~-------~----------   78 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKP-KENI-------P----------   78 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCT-TSCC-------C----------
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhccc-CCCc-------c----------
Confidence            456799999999999999999999999999999999999999999998876555532 2110       0          


Q ss_pred             ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEc--------cCCceeecCCCHHHHHhccCC
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD--------ADAKLCSVPDSRAAIFKDKSL  170 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~--------~~g~l~~vP~s~~~vf~~~~l  170 (539)
                      +.+ ...|+|++|+. |+++++.+.++++|.++++.+|++|+.++..|++.        ++|+++++|+++.++|+++.+
T Consensus        79 ~~~-g~~R~y~iDL~-P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lL  156 (475)
T 3p1w_A           79 SKY-GENRHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLL  156 (475)
T ss_dssp             GGG-CCGGGCCEESS-CCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTS
T ss_pred             ccc-ccccceEEeec-CeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCC
Confidence            112 35789999995 99999999999999999999999999999998764        257899999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhH
Q 009226          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (539)
Q Consensus       171 s~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~  250 (539)
                      ++.+|+++|+|+..+.++....+..   .. ..+....|+.+|++++++++.+++++.+++++.... +.  ...++.++
T Consensus       157 s~~eK~~l~kFL~~l~~~~~~~~~~---~~-~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~-~~--~~~~a~~~  229 (475)
T 3p1w_A          157 SLMEKNRCKNFYQYVSEWDANKRNT---WD-NLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLND-DY--LKQPAYLT  229 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTCGGG---ST-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccchh---hh-cccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCC-Cc--ccCCHHHH
Confidence            9999999999999988764321110   00 012346899999999999999999988887775321 11  22467889


Q ss_pred             HHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 009226          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (539)
Q Consensus       251 l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~V  330 (539)
                      +.+++.|+.|+++||++  +++||+||+++|+++|+|.+++.||+|+++++|++|..+ ++|++++|++.+|++++||+|
T Consensus       230 l~ri~~y~~Sl~~yg~s--~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d-~~g~v~gV~~~~G~~i~Ad~V  306 (475)
T 3p1w_A          230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFD-DDNKVCGIKSSDGEIAYCDKV  306 (475)
T ss_dssp             HHHHHHHHHHHHHHSSC--SEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCCC--ceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEe-cCCeEEEEEECCCcEEECCEE
Confidence            99999999999999854  489999999999999999999999999999999999984 278889999999999999999


Q ss_pred             EECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCC
Q 009226          331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGN  408 (539)
Q Consensus       331 I~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~ss~  408 (539)
                      |+++++.. .+        |+.      ....+.++|+|+|+++|+.+.  .+.++++||+.+++  ..++||++++|++
T Consensus       307 I~a~~~~~-~~--------p~~------~~~~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~~~--~~~~iy~~~~s~~  369 (475)
T 3p1w_A          307 ICDPSYVM-HL--------KNK------IKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLN--RKSDIYINLVSFQ  369 (475)
T ss_dssp             EECGGGCT-TS--------TTS------EEEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGGT--SSSCEEEEEEEGG
T ss_pred             EECCCccc-cC--------ccc------ccccceEEEEEEEEeccCcccCCCceEEEEeCCcccC--CCCCEEEEEECCC
Confidence            99887641 11        100      012467999999999999763  35678999987764  3578999999999


Q ss_pred             CccCCCCcEEEEEEEeeccccchHHHHHHHHHHHHh
Q 009226          409 LAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQK  444 (539)
Q Consensus       409 ~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~  444 (539)
                      +++||+|+||+|+||.+.+ .+++++|++++++|..
T Consensus       370 ~~~cp~G~~i~~~st~~e~-~~~~~~l~~~l~~l~~  404 (475)
T 3p1w_A          370 HGVTLKGKYIAIVSATVET-NNPIKEIEKPLELLGT  404 (475)
T ss_dssp             GTSSCTTCEEEEEEEECCS-SCHHHHTHHHHHTTCS
T ss_pred             cCcCCCCcEEEEEEeecCC-CCHHHHHHHHHHHhcc
Confidence            9999999999999998754 5899999999999983

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=5.3e-40  Score=351.58  Aligned_cols=376  Identities=24%  Similarity=0.474  Sum_probs=283.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      +.++||||||||++||+||++|+++|++|+|||+++++||+++|++.++...+. +.+...         .  ..  ...
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~-d~~~~~---------~--~~--~~~   74 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKF-KQNPIS---------K--EE--RES   74 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHH-CSSCCC---------H--HH--HHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhcee-ccCCcc---------c--cC--cch
Confidence            356999999999999999999999999999999999999999999987632222 111000         0  00  000


Q ss_pred             cccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHH
Q 009226          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~  179 (539)
                      .+ ...+.|.+++. |+++++++.+.++|.+.|+.+|++|+.++..|.+. +|+.+++|.++.+.|.+..++..+|+.++
T Consensus        75 ~~-~~g~~~~~~l~-P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~  151 (453)
T 2bcg_G           75 KF-GKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMK  151 (453)
T ss_dssp             HH-CCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHHH
T ss_pred             hc-ccccceeeccc-cceeecCcHHHHHHHhcCCccceEEEEccceeEEe-CCeEEECCCChHHHHhhhccchhhHHHHH
Confidence            01 13466888995 99999999999999999999999999998888764 89999999997788888888888999999


Q ss_pred             HHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHH
Q 009226          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS  259 (539)
Q Consensus       180 kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~  259 (539)
                      +|++.+.++....+..   .. ..+....|+.+|++++++++.+++++.+++++.....-   ...++..++.++..|+.
T Consensus       152 ~~~~~~~~~~~~~p~~---~~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~---~~~p~~~~~~~~~~~~~  224 (453)
T 2bcg_G          152 KFLEWISSYKEDDLST---HQ-GLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDY---LQQPARPSFERILLYCQ  224 (453)
T ss_dssp             HHHHHHHHCBTTBGGG---ST-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG---GGSBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchh---hh-ccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccc---cCCchHHHHHHHHHHHH
Confidence            9999887654221110   00 01245789999999999999999988776654321100   00134556666778888


Q ss_pred             hhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCC
Q 009226          260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (539)
Q Consensus       260 s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~  339 (539)
                      ++++++.  ++|.||+||+++|+++|++.+++.||+|+++++|++|..+++++++++|++ +|++++||+||+++.....
T Consensus       225 s~~~~~~--~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHhhcC--CceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            8888774  347899999999999999999999999999999999987521466778886 6889999999987543211


Q ss_pred             CCCcccchhhhhhhhhcccCCCcc-eEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCc
Q 009226          340 GSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (539)
Q Consensus       340 ~l~~~~~~~l~~~~~~l~~~~~~~-~vsr~i~I~~~~l~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~  416 (539)
                      .        +.          ... ...++++++++++..  ...+..+++|....+  .++.+|+.+.+..++.||+|+
T Consensus       302 ~--------l~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~--~~~~~~v~~~s~~d~~aP~G~  361 (453)
T 2bcg_G          302 K--------CK----------STGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLG--RKSDIYVAIVSDAHNVCSKGH  361 (453)
T ss_dssp             G--------EE----------EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTC
T ss_pred             h--------hc----------ccCCcceeEEEEEccccCCCCCCccEEEEeCccccC--CCCCEEEEEeCCCCCCCCCCc
Confidence            1        10          123 578889999998763  223567788865544  357899999998778999999


Q ss_pred             EEEEEEEeeccccchHHHHHHHHHHHH
Q 009226          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (539)
Q Consensus       417 ~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (539)
                      +++|++++++. .++++.|++++++|.
T Consensus       362 ~~~~v~~~~~~-~~~~~~l~~~~~~l~  387 (453)
T 2bcg_G          362 YLAIISTIIET-DKPHIELEPAFKLLG  387 (453)
T ss_dssp             EEEEEEEECCS-SCHHHHTHHHHGGGC
T ss_pred             EEEEEEEecCC-CCHHHHHHHHHHHhh
Confidence            99999998865 467888998888865

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=3.1e-38  Score=335.95  Aligned_cols=370  Identities=27%  Similarity=0.507  Sum_probs=281.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc-hhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      +.++||||||||++||++|++|+++|++|+|+|+++++||+++|++ +....+ .++.+..       ++..        
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~-~~~~~~~-------~~~~--------   67 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYK-RFQLLEG-------PPET--------   67 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHH-HTTCTTC-------CCGG--------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHh-hccCCCC-------ChhH--------
Confidence            4579999999999999999999999999999999999999999998 432110 1111000       0000        


Q ss_pred             ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                        + ...+.|.+|+ ||++++..+.+.++|.+.|+.+|++|+.++..|++. +|+.+.+|.++.+.+....++..+|+.+
T Consensus        68 --~-~~g~~~~~d~-gP~~l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~  142 (433)
T 1d5t_A           68 --M-GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYK-GGKIYKVPSTETEALASNLMGMFEKRRF  142 (433)
T ss_dssp             --G-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGGCCEEECCEEEEEE-TTEEEECCCSHHHHHHCSSSCHHHHHHH
T ss_pred             --h-cccCceEEcc-CcceeeccchHHHHHHHcCCccceEEEEeCceEEee-CCEEEECCCCHHHHhhCcccChhhHHHH
Confidence              1 1336789999 599999999999999999999999999998877764 8899999999778888888888899999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l  258 (539)
                      ++|++.+.++....+..   .+ ..++...|+.+|+++++.++.+++++.+.+++... .++  ...++..++.++..|.
T Consensus       143 ~~~~~~~~~~~~~~p~~---~~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~-~~~--~~~p~~~~~~~~~~~~  215 (433)
T 1d5t_A          143 RKFLVFVANFDENDPKT---FE-GVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRT-DDY--LDQPCLETINRIKLYS  215 (433)
T ss_dssp             HHHHHHHHHCCTTCGGG---GT-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGG--GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCchh---cc-ccccccCCHHHHHHHcCCCHHHHHHHHHHHHhccC-CCc--cCCCHHHHHHHHHHHH
Confidence            99999887653211110   00 11345789999999999999999988766544311 111  1245666777777888


Q ss_pred             HhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009226          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (539)
Q Consensus       259 ~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~  338 (539)
                      .+++++|.  ++++||+||+++|+++|++.+++.|++|+++++|++|..+  ++++++|+ .+|++++||+||++.... 
T Consensus       216 ~s~~~~g~--~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~-~~g~~~~ad~VV~a~~~~-  289 (433)
T 1d5t_A          216 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEGEVARCKQLICDPSYV-  289 (433)
T ss_dssp             HSCCSSSC--CSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEE--TTEEEEEE-ETTEEEECSEEEECGGGC-
T ss_pred             HHHHhcCC--CcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEe--CCEEEEEE-ECCeEEECCEEEECCCCC-
Confidence            87777774  3478999999999999999999999999999999999887  67777787 588999999999875432 


Q ss_pred             CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCc
Q 009226          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (539)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~  416 (539)
                      +..       ++    .      .....++++++++++...  +....+.+|...++  .++.+|+.+.+.+++.||+|+
T Consensus       290 ~~~-------~~----~------~~~~~~~~~il~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~s~d~~~aP~G~  350 (433)
T 1d5t_A          290 PDR-------VR----K------AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN--RKSDIYVCMISYAHNVAAQGK  350 (433)
T ss_dssp             GGG-------EE----E------EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTC
T ss_pred             ccc-------cc----c------cCcceeEEEEEcCcccccCCCceEEEEeCccccC--CCCCEEEEEECCCCcccCCCC
Confidence            111       00    0      124667888889887532  24567788865544  357899999997778999999


Q ss_pred             EEEEEEEeeccccchHHHHHHHHHHHH
Q 009226          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (539)
Q Consensus       417 ~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (539)
                      ++++++++++. .++++.|++++++|.
T Consensus       351 ~~~~~~~~~p~-~~~~~~l~~~~~~l~  376 (433)
T 1d5t_A          351 YIAIASTTVET-TDPEKEVEPALGLLE  376 (433)
T ss_dssp             EEEEEEEECCS-SCHHHHTHHHHTTTC
T ss_pred             EEEEEEEecCC-CCHHHHHHHHHHHhh
Confidence            99999998875 467788999988865

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.97  E-value=8.2e-30  Score=275.35  Aligned_cols=344  Identities=15%  Similarity=0.122  Sum_probs=203.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      .+|||||||++||+||++|+++|++|+|||+++++||+++|++.+|                                  
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G----------------------------------   47 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQG----------------------------------   47 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETT----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCC----------------------------------
Confidence            5799999999999999999999999999999999999999986543                                  


Q ss_pred             CCCCCeEEecCCCEEEecChHHHHHHhcCC--ccccccccccccee-eEccCCceeecCCCHHHHHhc-cCCChhhHHHH
Q 009226          103 QHPRNFNLDVSGPRVLFCADHAVDLMLKSG--ASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQL  178 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~--~~~y~ef~~v~~~~-~~~~~g~l~~vP~s~~~vf~~-~~ls~~ek~~l  178 (539)
                           |.+|. ||+++...+.+.+++...+  +.+++++..+++.+ +...+|+...++.+....... ..+++.+...+
T Consensus        48 -----~~~D~-G~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~  121 (501)
T 4dgk_A           48 -----FTFDA-GPTVITDPSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGY  121 (501)
T ss_dssp             -----EEEEC-SCCCBSCTHHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHH
T ss_pred             -----EEEec-CceeecCchhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchh
Confidence                 55677 5877766665556655544  56778888887766 334578888888876543321 23456777788


Q ss_pred             HHHHHHHHhhcccCcc-c-----ccccc---cccc----ccCCcHHHHHHhcCCChhHHHHHHH-HHhcccCCcchhhhh
Q 009226          179 MRFFKLVQGHLSLDES-E-----ENNVR---ISEE----DLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYV  244 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~-~-----~~~~~---~~~~----~~~~~~~efL~~~~l~~~l~~~l~~-~i~l~~~~~~~~~~~  244 (539)
                      .+|++.++........ .     ....+   ....    ....++.+++.++..++.++.++.+ +......+..     
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~-----  196 (501)
T 4dgk_A          122 RQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFA-----  196 (501)
T ss_dssp             HHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC-------
T ss_pred             hhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcch-----
Confidence            8888776554321100 0     00000   0001    0113677888888888888887653 2222111111     


Q ss_pred             ccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcE
Q 009226          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (539)
Q Consensus       245 ~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~  324 (539)
                      .+....   +..++  ....|     ..||+||+++|+++|++.++..||+|++|++|++|.++  ++++++|++++|++
T Consensus       197 ~~~~~~---~~~~~--~~~~G-----~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~~g~~  264 (501)
T 4dgk_A          197 TSSIYT---LIHAL--EREWG-----VWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLEDGRR  264 (501)
T ss_dssp             CCCTHH---HHHHH--HSCCC-----EEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCE
T ss_pred             hhhhhh---hhhhh--hccCC-----eEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee--CCeEEEEEecCCcE
Confidence            122211   11111  11122     56999999999999999999999999999999999998  88999999999999


Q ss_pred             EEcCEEEEC--CCCCCCCCCcccchhhhhhh-hhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCC--C-------
Q 009226          325 ILSHKLVLD--PSFTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRS--L-------  392 (539)
Q Consensus       325 i~Ad~VI~~--p~~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~--~-------  392 (539)
                      +.||.||++  |..++..|+ +.. +.+... +.+.............+-++.+......+ .+.+.+..  .       
T Consensus       265 ~~ad~VV~~a~~~~~~~~Ll-~~~-~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~-~i~~~~~~~~~~~~~~~~  341 (501)
T 4dgk_A          265 FLTQAVASNADVVHTYRDLL-SQH-PAAVKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHH-TVCFGPRYRELIDEIFNH  341 (501)
T ss_dssp             EECSCEEECCC-----------------------------CCEEEEEEEEESSCCTTSCSE-EEEEECC-----------
T ss_pred             EEcCEEEECCCHHHHHHHhc-ccc-ccchhhhhhhhccccCCceeEEEecccCCccccccc-eeccccchhhhccccccc
Confidence            999999975  444444443 211 122111 11111111122233333356655433322 23332210  0       


Q ss_pred             -CCCCCceEEEEEeCCC-CccCCCCcEEEEEEEeec
Q 009226          393 -FPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCD  426 (539)
Q Consensus       393 -~~~~~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~  426 (539)
                       .-...+.+|+...+.. ...+|+|+.++++.+.++
T Consensus       342 ~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p  377 (501)
T 4dgk_A          342 DGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVP  377 (501)
T ss_dssp             --CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEEC
T ss_pred             cccccCCceecccCCCCCCCcCCCCCceEEEEEecC
Confidence             0012456888777654 488999999999888765

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.91  E-value=6.7e-23  Score=216.45  Aligned_cols=332  Identities=13%  Similarity=0.122  Sum_probs=195.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      +||||||||++||+||+.|+++|++|+||||++++||+++++..++                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g----------------------------------   46 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKG----------------------------------   46 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCC----------------------------------
Confidence            4899999999999999999999999999999999999999976543                                  


Q ss_pred             CCCCCeEEecCCCEEEec---ChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHH
Q 009226          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~~---~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~  179 (539)
                           |.+|. ||+.+..   ...+.+++.+.+..  .++...++...+..+|+..++|...      ..+++.++..+.
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~~~~  112 (421)
T 3nrn_A           47 -----FQLST-GALHMIPHGEDGPLAHLLRILGAK--VEIVNSNPKGKILWEGKIFHYRESW------KFLSVKEKAKAL  112 (421)
T ss_dssp             -----EEEES-SSCSEETTTTSSHHHHHHHHHTCC--CCEEECSSSCEEEETTEEEEGGGGG------GGCC--------
T ss_pred             -----EEEec-CCeEEEccCCChHHHHHHHHhCCc--ceEEECCCCeEEEECCEEEEcCCch------hhCCHhHHHHHH
Confidence                 44565 4654432   23566666666653  3333333322222277777776532      235566666666


Q ss_pred             HHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCC-ChhHHHHHHH-HHhcccCCcchhhhhccchhHHHHHHHH
Q 009226          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-PHKIKSIVLY-AIAMADYDQEVSEYVLKTRDGINRLALY  257 (539)
Q Consensus       180 kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l-~~~l~~~l~~-~i~l~~~~~~~~~~~~s~~~~l~~i~~~  257 (539)
                      +++.......             .+..+.++.+|++++++ ++.++.++.. .......+.    ..++....+..+..+
T Consensus       113 ~~~~~~~~~~-------------~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  175 (421)
T 3nrn_A          113 KLLAEIRMNK-------------LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSL----SDLTALELAKEIRAA  175 (421)
T ss_dssp             CCHHHHHTTC-------------CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCG----GGSBHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-------------CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc----ccCCHHHHHHHHHHH
Confidence            5554333210             01234789999998744 4455554432 111111111    235555555544433


Q ss_pred             HHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCC
Q 009226          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSF  336 (539)
Q Consensus       258 l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~  336 (539)
                      .    .++   + +.+|++|+++|+++|++.++..|++|++|++|++|..+  ++++  | +++|++++||.||++ +..
T Consensus       176 ~----~~~---g-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V-~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          176 L----RWG---G-PGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIE--EKKV--Y-TRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             H----HHC---S-CEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETT--TTEE--E-ETTCCEEECSEEEECSCHH
T ss_pred             h----hcC---C-cceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE--CCEE--E-EeCCcEEEeCEEEECCCHH
Confidence            2    223   2 46999999999999999999999999999999999865  5654  6 468899999999975 322


Q ss_pred             CCCCCCcccchhhhhhh-hhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCC-CCccCCC
Q 009226          337 TVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGG-NLAVCPL  414 (539)
Q Consensus       337 ~~~~l~~~~~~~l~~~~-~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ss-~~~~cP~  414 (539)
                      ...+++ + .+.+|..+ +.+. +..........+.++++..  ....+ .+++...      .-.+...+. +...+|+
T Consensus       243 ~~~~ll-~-~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~--~~~~~-~~~~~~~------~~~i~~~s~~~p~~ap~  310 (421)
T 3nrn_A          243 ETVKLI-G-RDYFDRDYLKQVD-SIEPSEGIKFNLAVPGEPR--IGNTI-VFTPGLM------INGFNEPSALDKSLARE  310 (421)
T ss_dssp             HHHHHH-C-GGGSCHHHHHHHH-TCCCCCEEEEEEEEESSCS--SCSSE-EECTTSS------SCEEECGGGTCGGGSCT
T ss_pred             HHHHhc-C-cccCCHHHHHHHh-CCCCCceEEEEEEEcCCcc--cCCeE-EEcCCcc------eeeEeccCCCCCCcCCC
Confidence            222332 1 11222221 1111 1122234444455676632  22223 3443221      112333333 3478999


Q ss_pred             CcEEEEEEEeeccccchHHHHHHHHHHHHhh
Q 009226          415 GMFVLYFSALCDEVNQGKKLLHAALSALQKL  445 (539)
Q Consensus       415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~  445 (539)
                      |+.+++++...... +.++.++.+++.|-..
T Consensus       311 G~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~  340 (421)
T 3nrn_A          311 GYTLIMAHMALKNG-NVKKAIEKGWEELLEI  340 (421)
T ss_dssp             TEEEEEEEEECTTC-CHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEeeccc-cHHHHHHHHHHHHHHH
Confidence            99999998876543 3345566777766654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.91  E-value=2.2e-22  Score=212.24  Aligned_cols=335  Identities=13%  Similarity=0.093  Sum_probs=193.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      +||||||||++||+||+.|+++|++|+|||+++++||+++++..++                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKG----------------------------------   46 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCC----------------------------------
Confidence            5999999999999999999999999999999999999999986654                                  


Q ss_pred             CCCCCeEEecCCCEEEec---ChHHHHHHhcCCcccccccccccceeeEc-c--------CCceeecCCCHHHHHhccCC
Q 009226          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLD-A--------DAKLCSVPDSRAAIFKDKSL  170 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~~---~~~lv~~L~~s~~~~y~ef~~v~~~~~~~-~--------~g~l~~vP~s~~~vf~~~~l  170 (539)
                           |.+|. ||..+..   ...+.+++.+.|....+.... .....+. .        +++.+.++..      ...+
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  113 (425)
T 3ka7_A           47 -----FQLSS-GAFHMLPNGPGGPLACFLKEVEASVNIVRSE-MTTVRVPLKKGNPDYVKGFKDISFNDF------PSLL  113 (425)
T ss_dssp             -----EEEES-SSCSCBTTGGGSHHHHHHHHTTCCCCEEECC-CCEEEEESSTTCCSSTTCEEEEEGGGG------GGGS
T ss_pred             -----cEEcC-CCceEecCCCccHHHHHHHHhCCCceEEecC-CceEEeecCCCcccccccccceehhhh------hhhC
Confidence                 23333 2332221   124555566666533221111 1111110 0        1333333321      1245


Q ss_pred             ChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHH-HHhcccCCcchhhhhccchh
Q 009226          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVLKTRD  249 (539)
Q Consensus       171 s~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~-~i~l~~~~~~~~~~~~s~~~  249 (539)
                      ++.++..+.+.+.....               ....+.++.+|++++.-++.++.++.. .......+.    ..+++..
T Consensus       114 ~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~  174 (425)
T 3ka7_A          114 SYKDRMKIALLIVSTRK---------------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKS----DEVPVEE  174 (425)
T ss_dssp             CHHHHHHHHHHHHHTTT---------------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCG----GGSBHHH
T ss_pred             CHHHHHHHHHHHHhhhh---------------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCc----ccchHHH
Confidence            56666655544332110               012357899999987666666665432 111111121    2355554


Q ss_pred             HHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCE
Q 009226          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (539)
Q Consensus       250 ~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~  329 (539)
                      .+..+..+    ..++   + ..+|++|++.|+++|.+.++..|++|+++++|++|..+  ++++++|++ +|++++||.
T Consensus       175 ~~~~~~~~----~~~~---~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~-~g~~~~ad~  243 (425)
T 3ka7_A          175 VFEIIENM----YRFG---G-TGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIE--NGKAAGIIA-DDRIHDADL  243 (425)
T ss_dssp             HHHHHHHH----HHHC---S-CEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEE-TTEEEECSE
T ss_pred             HHHHHHHH----HhcC---C-ccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEE-CCEEEECCE
Confidence            44444332    1223   2 46999999999999999999999999999999999987  778878886 588999999


Q ss_pred             EEEC-CCCCCCCCCcccchhh--hhhh-hhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEe
Q 009226          330 LVLD-PSFTVPGSLASSHQQL--QESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL  405 (539)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l--~~~~-~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~  405 (539)
                      ||++ |.+....++.. .+.+  +..+ +.+ ++.......+..+.+++++..   ...+.+++..     .....+...
T Consensus       244 VV~a~~~~~~~~ll~~-~~~~~~~~~~~~~~-~~~~~~~~~~v~l~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~  313 (425)
T 3ka7_A          244 VISNLGHAATAVLCSE-ALSKEADAAYFKMV-GTLQPSAGIKICLAADEPLVG---HTGVLLTPYT-----RRINGVNEV  313 (425)
T ss_dssp             EEECSCHHHHHHHTTT-TCCTTTTHHHHHHH-HHCCCBEEEEEEEEESSCSSC---SSSEEECCSS-----SSEEEEECG
T ss_pred             EEECCCHHHHHHhcCC-cccccCCHHHHHHh-hCcCCCceEEEEeecCCCccC---cCEEEECCCh-----hhcceEEec
Confidence            9975 33322233211 1111  2211 122 111233344555567777532   2333444421     122334444


Q ss_pred             CC-CCccCCCCcEEEEEEEeeccc--cchHHHHHHHHHHHHh
Q 009226          406 GG-NLAVCPLGMFVLYFSALCDEV--NQGKKLLHAALSALQK  444 (539)
Q Consensus       406 ss-~~~~cP~G~~vi~~st~~~~~--~~~~~~l~~~~~~l~~  444 (539)
                      |. ++..+|+|+.++++.......  +..++.++.+++.|-.
T Consensus       314 s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  355 (425)
T 3ka7_A          314 TQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKE  355 (425)
T ss_dssp             GGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHH
T ss_pred             cCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHH
Confidence            43 357899999999887654321  1123555666555554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.90  E-value=2.9e-22  Score=214.89  Aligned_cols=349  Identities=15%  Similarity=0.143  Sum_probs=202.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      .+||||||||++||+||..|+++|++|+|||+++++||+++|+..++                                 
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g---------------------------------   62 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG---------------------------------   62 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCC---------------------------------
Confidence            57999999999999999999999999999999999999999976533                                 


Q ss_pred             cCCCCCeEEecCCCEEEec-ChHHHHHHhcCCccccccccc--ccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226          102 SQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS--IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~--v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                            +.+|. |++++.. ...+.+++.+.|+...+.+..  ....+++. +|+.+++|.+..+++....++..++..+
T Consensus        63 ------~~~~~-g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~  134 (478)
T 2ivd_A           63 ------YLVEQ-GPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPPAFLASDILPLGARLRV  134 (478)
T ss_dssp             ------EEEES-SCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEE-TTEEEECCCSHHHHHTCSSSCHHHHHHH
T ss_pred             ------eeeec-ChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEE-CCEEEECCCCHHHhccCCCCCHHHHHHH
Confidence                  44566 4777655 346778888888866554332  11233443 7888899988777766555554433221


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-hcccCCcchhhhhccchhHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALY  257 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i-~l~~~~~~~~~~~~s~~~~l~~i~~~  257 (539)
                            +...... .        .....+.++.+|+++..-++.++.++.... ...  ..++  .++++...+..+..+
T Consensus       135 ------~~~~~~~-~--------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~~~~~~~~~  195 (478)
T 2ivd_A          135 ------AGELFSR-R--------APEGVDESLAAFGRRHLGHRATQVLLDAVQTGIY--AGDV--EQLSVAATFPMLVKM  195 (478)
T ss_dssp             ------HGGGGCC-C--------CCTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHH--CCCT--TTBBHHHHCHHHHHH
T ss_pred             ------hhhhhcC-C--------CCCCCCCCHHHHHHHhhCHHHHHHHHHHHhceee--cCCH--HHhhHHHHhHHHHHH
Confidence                  2222110 0        012456899999997433333333332111 111  1111  235555544444333


Q ss_pred             HHhhhh-------c----------cCCC----ccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEE
Q 009226          258 NSSIGR-------F----------QNAL----GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (539)
Q Consensus       258 l~s~g~-------~----------g~~~----ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~g  316 (539)
                      ....+.       .          ....    +.+.+|++|++.|+++|++.+   |++|+++++|++|..+  +++ ++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~--~~~-~~  269 (478)
T 2ivd_A          196 EREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE--DGG-WR  269 (478)
T ss_dssp             HHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC----C-CE
T ss_pred             HHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec--CCe-EE
Confidence            221110       0          0000    236799999999999988754   7899999999999875  444 57


Q ss_pred             EEe---CCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCC
Q 009226          317 VRL---ASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSL  392 (539)
Q Consensus       317 V~l---~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~  392 (539)
                      |++   .+|++++||+||++ |...+..++    ++++..+...........+.+..+.+++++.+.+....+.+|... 
T Consensus       270 v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll----~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-  344 (478)
T 2ivd_A          270 LIIEEHGRRAELSVAQVVLAAPAHATAKLL----RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEE-  344 (478)
T ss_dssp             EEEEETTEEEEEECSEEEECSCHHHHHHHH----TTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGG-
T ss_pred             EEEeecCCCceEEcCEEEECCCHHHHHHHh----hccCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCC-
Confidence            777   68889999999975 333222221    223333222223334556777778888885433223334455321 


Q ss_pred             CCCCCceEEEEEeCC-CCccCCCCcEEEEEEEeeccc-----cchHHHHHHHHHHHHh
Q 009226          393 FPEQVTSIRVLQLGG-NLAVCPLGMFVLYFSALCDEV-----NQGKKLLHAALSALQK  444 (539)
Q Consensus       393 ~~~~~~~v~v~~~ss-~~~~cP~G~~vi~~st~~~~~-----~~~~~~l~~~~~~l~~  444 (539)
                         ......+...++ ....+|+|..++.+.......     ...++..+.+++.|..
T Consensus       345 ---~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  399 (478)
T 2ivd_A          345 ---QRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKA  399 (478)
T ss_dssp             ---CCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHHHH
T ss_pred             ---CCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHHHHH
Confidence               011222333222 235678887766554433221     1223444555555544

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.89  E-value=1.1e-21  Score=212.95  Aligned_cols=295  Identities=14%  Similarity=0.081  Sum_probs=184.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      ..+||||||||++||+||..|+++|++|+|||+++++||++.|+..+                                 
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~---------------------------------   49 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ---------------------------------   49 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCT---------------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccC---------------------------------
Confidence            45899999999999999999999999999999999999999997653                                 


Q ss_pred             ccCCCCCeEEecCCCEEEec-ChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHH
Q 009226          101 LSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~  179 (539)
                           ..+.+|+ |++++.. ...+.+++.+.|+..+..+..-.. +.+ .+|+...++...    . ..+++.+...+.
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~-~~~-~~g~~~~~~~~~----p-~~~~~~~~~~~~  116 (520)
T 1s3e_A           50 -----KVKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNEVERL-IHH-VKGKSYPFRGPF----P-PVWNPITYLDHN  116 (520)
T ss_dssp             -----TTSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCCSSEE-EEE-ETTEEEEECSSS----C-CCCSHHHHHHHH
T ss_pred             -----CCccccc-CceEecCCcHHHHHHHHHcCCcceecccCCce-EEE-ECCEEEEecCCC----C-CCCCHHHHHHHH
Confidence                 1233566 4776654 346777888888765543332211 222 366666554320    0 012333444444


Q ss_pred             HHHHHHHhhcccCccccc-cccccccccCCcHHHHHHhcCCChhHHHHHHHHH-hcccCCcchhhhhccchhHHHHHHHH
Q 009226          180 RFFKLVQGHLSLDESEEN-NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALY  257 (539)
Q Consensus       180 kfl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i-~l~~~~~~~~~~~~s~~~~l~~i~~~  257 (539)
                      +++..+.+.......... ......++.+.++.+|+++...++.++.++.... ...  ..++  .++++...+.    +
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--g~~~--~~~s~~~~~~----~  188 (520)
T 1s3e_A          117 NFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCV--TAET--HEVSALWFLW----Y  188 (520)
T ss_dssp             HHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHH--SSCT--TTSBHHHHHH----H
T ss_pred             HHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhc--CCCh--HHhHHHHHHH----H
Confidence            444433332211100000 0001123567899999999888888877664321 111  1121  2345544432    2


Q ss_pred             HHhhhh----ccC-CCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          258 NSSIGR----FQN-ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       258 l~s~g~----~g~-~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      +...+.    +.. ..+.+.++.+|+++|+++|++.   .|++|++|++|++|..+  ++++ .|++.+|+++.||+||+
T Consensus       189 ~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~~~ad~VI~  262 (520)
T 1s3e_A          189 VKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---LGDRVKLERPVIYIDQT--RENV-LVETLNHEMYEAKYVIS  262 (520)
T ss_dssp             HHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH---HGGGEESSCCEEEEECS--SSSE-EEEETTSCEEEESEEEE
T ss_pred             HhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHH---cCCcEEcCCeeEEEEEC--CCeE-EEEECCCeEEEeCEEEE
Confidence            222111    110 1122568999999999988764   48899999999999875  4554 48888999999999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      + |...+..+  .++|++|..+....++..++.+.+..+.+++++-
T Consensus       263 a~p~~~l~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w  306 (520)
T 1s3e_A          263 AIPPTLGMKI--HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW  306 (520)
T ss_dssp             CSCGGGGGGS--EEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGG
T ss_pred             CCCHHHHcce--eeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcc
Confidence            5 44333343  2456677666554455667788888888998863

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.87  E-value=6e-21  Score=203.23  Aligned_cols=292  Identities=11%  Similarity=0.104  Sum_probs=173.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      +.++||||||||++||+||..|+++|++|+|+|+++++||++.++..++                               
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g-------------------------------   51 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDG-------------------------------   51 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETT-------------------------------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCC-------------------------------
Confidence            3568999999999999999999999999999999999999999876533                               


Q ss_pred             cccCCCCCeEEecCCCEEEec-ChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                              +.+|+ |++++.. ...+.+++.+.|+..+..+......+. ..+|+...++...      ..+++.....+
T Consensus        52 --------~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~~~~~~~------~~~~~~~~~~~  115 (453)
T 2yg5_A           52 --------AVLEI-GGQWVSPDQTALISLLDELGLKTFERYREGESVYI-SSAGERTRYTGDS------FPTNETTKKEM  115 (453)
T ss_dssp             --------EEEEC-SCCCBCTTCHHHHHHHHHTTCCEEECCCCSEEEEE-CTTSCEEEECSSS------CSCCHHHHHHH
T ss_pred             --------ceecc-CCeEecCccHHHHHHHHHcCCcccccccCCCEEEE-eCCCceeeccCCC------CCCChhhHHHH
Confidence                    23344 3444332 346677777788766554433222222 2125544443210      01222222222


Q ss_pred             HHHHHHHHhh----cccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhh-hccchhHHHH
Q 009226          179 MRFFKLVQGH----LSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEY-VLKTRDGINR  253 (539)
Q Consensus       179 ~kfl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~-~~s~~~~l~~  253 (539)
                      .+++..+...    ....+..   .....++.+.++.+||++++.++.++.++...+ ...+..++  . ++++...+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~s~~~~~~~  189 (453)
T 2yg5_A          116 DRLIDEMDDLAAQIGAEEPWA---HPLARDLDTVSFKQWLINQSDDAEARDNIGLFI-AGGMLTKP--AHSFSALQAVLM  189 (453)
T ss_dssp             HHHHHHHHHHHHHHCSSCGGG---STTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHH-CCCCCCSC--TTSSBHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCC---CcchhhhhhccHHHHHHhhcCCHHHHHHHHHHH-HhhcccCC--cccccHHHHHHH
Confidence            2322222111    1000000   001123457899999999888888888665332 11222222  2 3555544332


Q ss_pred             HHHHHHhhhhc----cCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCE
Q 009226          254 LALYNSSIGRF----QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (539)
Q Consensus       254 i~~~l~s~g~~----g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~  329 (539)
                      +    ...+.+    ....+.+.++++|++.|+++|++.   .|++|++|++|++|..+  +++.+.|++ +|+++.||+
T Consensus       190 ~----~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~~v~v~~-~~~~~~ad~  259 (453)
T 2yg5_A          190 A----ASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEA---LGDDVFLNAPVRTVKWN--ESGATVLAD-GDIRVEASR  259 (453)
T ss_dssp             H----HHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHH---HGGGEECSCCEEEEEEE--TTEEEEEET-TTEEEEEEE
T ss_pred             h----ccCCcHhhhccCCCcceEEEcCChHHHHHHHHHh---cCCcEEcCCceEEEEEe--CCceEEEEE-CCeEEEcCE
Confidence            2    221111    000012468999999999988764   48999999999999876  554245764 788999999


Q ss_pred             EEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                      ||++ |...+..+.  +++++|..+....++...+.+.+..+.+++++
T Consensus       260 VI~a~p~~~~~~l~--~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~  305 (453)
T 2yg5_A          260 VILAVPPNLYSRIS--YDPPLPRRQHQMHQHQSLGLVIKVHAVYETPF  305 (453)
T ss_dssp             EEECSCGGGGGGSE--EESCCCHHHHHHGGGEEECCEEEEEEEESSCG
T ss_pred             EEEcCCHHHHhcCE--eCCCCCHHHHHHHhcCCCcceEEEEEEECCCC
Confidence            9975 444434432  44566665443333344566777777788885

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.87  E-value=3.7e-21  Score=205.15  Aligned_cols=348  Identities=13%  Similarity=0.140  Sum_probs=190.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISN   95 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G------~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (539)
                      .+||||||||++||+||.+|+++|      ++|+|||+++++||++.|...++                           
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g---------------------------   57 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDG---------------------------   57 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTT---------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCC---------------------------
Confidence            489999999999999999999999      99999999999999999975532                           


Q ss_pred             cccccccCCCCCeEEecCCCEEEec-ChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCH--------HHHHh
Q 009226           96 YASRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFK  166 (539)
Q Consensus        96 ~~~~~~~~~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~--------~~vf~  166 (539)
                                  +.+|. |++.+.. ...+.+++.+.|+...+........+++. +|++..+|...        ..+++
T Consensus        58 ------------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~p~~~~~~~~  123 (470)
T 3i6d_A           58 ------------YIIER-GPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLV-NRTLHPMPKGAVMGIPTKIAPFVS  123 (470)
T ss_dssp             ------------CCEES-SCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEEC-SSCEEECCC---------------
T ss_pred             ------------EEecc-ChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEE-CCEEEECCCCcccCCcCchHHhhc
Confidence                        33455 4654433 33577788888887655432233344443 67777776532        11222


Q ss_pred             ccCCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHH-HHhcccCCcchhhhhc
Q 009226          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVL  245 (539)
Q Consensus       167 ~~~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~-~i~l~~~~~~~~~~~~  245 (539)
                      ...++..++...  ......   .          ......+.++.+|+++..-.+....++.. ..+.  +..+.  .++
T Consensus       124 ~~~~~~~~~~~~--~~~~~~---~----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~  184 (470)
T 3i6d_A          124 TGLFSLSGKARA--AMDFIL---P----------ASKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGI--YAGDI--DKL  184 (470)
T ss_dssp             ------CCSHHH--HHHHHS---C----------CCSSSSCCBHHHHHHHHSCHHHHHHTHHHHHHHT--TCSCT--TTB
T ss_pred             cCcCCHHHHHHH--hcCccc---C----------CCCCCCCcCHHHHHHHhcCHHHHHHhccchhcEE--ecCCH--HHh
Confidence            222222222111  001000   0          01234568999999874333333333221 1122  22222  224


Q ss_pred             cchhHHHHHHHHHHhhhhcc-----------------CCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEe
Q 009226          246 KTRDGINRLALYNSSIGRFQ-----------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (539)
Q Consensus       246 s~~~~l~~i~~~l~s~g~~g-----------------~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~  308 (539)
                      ++...+..+..+....+...                 ...+.+.++++|++.|+++|++.+..  ++|+++++|++|..+
T Consensus       185 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  262 (470)
T 3i6d_A          185 SLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS  262 (470)
T ss_dssp             BHHHHCGGGCC-------------------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc
Confidence            44333322211111110000                 00124778999999999988764432  799999999999876


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC-CceEEE
Q 009226          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVI  386 (539)
Q Consensus       309 ~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~-~~~~~~  386 (539)
                        +++ +.|++++|+++.||+||+. |...+..++  .++++....+    +.....+.+..+.+++++-+.+ ....++
T Consensus       263 --~~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~l~--~~~~~~~~~~----~~~~~~~~~v~l~~~~~~~~~~~~~~g~l  333 (470)
T 3i6d_A          263 --GSC-YSLELDNGVTLDADSVIVTAPHKAAAGML--SELPAISHLK----NMHSTSVANVALGFPEGSVQMEHEGTGFV  333 (470)
T ss_dssp             --SSS-EEEEESSSCEEEESEEEECSCHHHHHHHT--TTSTTHHHHH----TCEEEEEEEEEEEESSTTCCCSSCSSEEE
T ss_pred             --CCe-EEEEECCCCEEECCEEEECCCHHHHHHHc--CCchhhHHHh----cCCCCceEEEEEEECchhcCCCCCCeEEE
Confidence              444 5788889989999999975 433322222  1222222222    2345667777777898864332 334455


Q ss_pred             eCCCCCCCCCCceEEEEEeCC--CCccCCCCcEEEEEEEeecc-----ccchHHHHHHHHHHHHhh
Q 009226          387 FPPRSLFPEQVTSIRVLQLGG--NLAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKL  445 (539)
Q Consensus       387 ~p~~~~~~~~~~~v~v~~~ss--~~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~~  445 (539)
                      +|...     ...+......+  ....+|.|..++.+......     ..+.++.++.+++.|-..
T Consensus       334 ~~~~~-----~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  394 (470)
T 3i6d_A          334 ISRNS-----DFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKV  394 (470)
T ss_dssp             ECSTT-----CCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGG
T ss_pred             ccCCC-----CCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHH
Confidence            55432     12233333332  23567888877766542221     113345555565555543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.86  E-value=2.2e-20  Score=200.23  Aligned_cols=328  Identities=15%  Similarity=0.164  Sum_probs=190.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (539)
                      |..+||+|||||++||++|..|+++|  ++|+|||+++++||++++....+                             
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g-----------------------------   52 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDG-----------------------------   52 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTT-----------------------------
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCC-----------------------------
Confidence            45689999999999999999999999  99999999999999999976533                             


Q ss_pred             cccccCCCCCeEEecCCCEEEec-ChHHHHHHhcCCcccccccccccceeeEccCCceeecCCC--------HHHHHhcc
Q 009226           98 SRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKDK  168 (539)
Q Consensus        98 ~~~~~~~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s--------~~~vf~~~  168 (539)
                                +.+|. |++.+.. ...+.+++.+.|+............+++. +|++.++|..        ...+++..
T Consensus        53 ----------~~~~~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~p~~~~~~~~~~  120 (475)
T 3lov_A           53 ----------FTIER-GPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILD-TGGLHPIPKGAVMGIPTDLDLFRQTT  120 (475)
T ss_dssp             ----------CCEES-SCCCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEE-TTEEEECCSSEETTEESCHHHHTTCS
T ss_pred             ----------EEEec-CchhhhcccHHHHHHHHHcCCcceEeecCCCceEEEE-CCEEEECCCcccccCcCchHHHhhcc
Confidence                      23355 3554433 34677888888887654433233344443 7777777653        34555666


Q ss_pred             CCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccch
Q 009226          169 SLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (539)
Q Consensus       169 ~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~  248 (539)
                      .++..+|..+..++   .....         .......+.++.+|+++..-.+....++. .+....+..+.  .++++.
T Consensus       121 ~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--~~ls~~  185 (475)
T 3lov_A          121 LLTEEEKQEVADLL---LHPSD---------SLRIPEQDIPLGEYLRPRLGDALVEKLIE-PLLSGIYAGNI--DQMSTF  185 (475)
T ss_dssp             SSCHHHHHHHHHHH---HSCCT---------TCCCCSSCCBHHHHHHHHHCHHHHHHTHH-HHHHGGGCCCT--TTSBST
T ss_pred             CCChhHHHHhhCcc---cCCcc---------cccCCCCCcCHHHHHHHHhCHHHHHHHHH-HHhceeecCCh--HHcCHH
Confidence            66666555222221   11100         00113456899999986322223333322 11111122222  235555


Q ss_pred             hHHHHHHHHHHhhhhc-------c-------------CCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEe
Q 009226          249 DGINRLALYNSSIGRF-------Q-------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (539)
Q Consensus       249 ~~l~~i~~~l~s~g~~-------g-------------~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~  308 (539)
                      ..+..+..+....+.+       .             ...+.+.++++|++.|+++|++.+..  ++|+++++|++|..+
T Consensus       186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  263 (475)
T 3lov_A          186 ATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE  263 (475)
T ss_dssp             TTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe
Confidence            4444444332222110       0             00134789999999999988765432  799999999999876


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEe
Q 009226          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (539)
Q Consensus       309 ~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~  387 (539)
                        +++ +.|++.+| ++.||+||+. |.+.+..++  .++++ +..    ....+..+.+..+.+++++........+++
T Consensus       264 --~~~-~~v~~~~g-~~~ad~vV~a~p~~~~~~ll--~~~~~-~~~----~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~  332 (475)
T 3lov_A          264 --DGR-YRLKTDHG-PEYADYVLLTIPHPQVVQLL--PDAHL-PEL----EQLTTHSTATVTMIFDQQQSLPIEGTGFVV  332 (475)
T ss_dssp             --TTE-EEEECTTC-CEEESEEEECSCHHHHHHHC--TTSCC-HHH----HTCCEEEEEEEEEEEECCSSCSSSSSEEEE
T ss_pred             --CCE-EEEEECCC-eEECCEEEECCCHHHHHHHc--CccCH-HHH----hcCCCCeEEEEEEEECCcCCCCCCCEEEEe
Confidence              444 56888888 7999999975 433322322  11111 111    223456677777788998722223344555


Q ss_pred             CCCCCCCCCCceEEEEEeCCC--CccCCCCcEEEEEE
Q 009226          388 PPRSLFPEQVTSIRVLQLGGN--LAVCPLGMFVLYFS  422 (539)
Q Consensus       388 p~~~~~~~~~~~v~v~~~ss~--~~~cP~G~~vi~~s  422 (539)
                      |+..     ...+....+.+.  ....|. ..++...
T Consensus       333 ~~~~-----~~~~~~~~~~s~~~~~~~p~-~~~l~~~  363 (475)
T 3lov_A          333 NRRA-----PYSITACTAIDQKWNHSAPD-HTVLRAF  363 (475)
T ss_dssp             CTTS-----SCSEEEEEEHHHHCTTTCTT-EEEEEEE
T ss_pred             cCCC-----CCceEEEEEEcccCCCCCCC-cEEEEEE
Confidence            5432     223444444332  344565 4444443

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.86  E-value=8.1e-21  Score=203.43  Aligned_cols=326  Identities=13%  Similarity=0.082  Sum_probs=183.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      +||||||||++||+||++|+++|+  +|+|||+++++||++.++...                                 
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~---------------------------------   49 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP---------------------------------   49 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT---------------------------------
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc---------------------------------
Confidence            699999999999999999999999  999999999999999996542                                 


Q ss_pred             ccCCCCCeEEecCCCEEEecC----hHHHHHHhcCCccccccccc-----ccceeeEccCCceeecCCCHHHHHhc-cCC
Q 009226          101 LSQHPRNFNLDVSGPRVLFCA----DHAVDLMLKSGASHYLEFKS-----IDATFMLDADAKLCSVPDSRAAIFKD-KSL  170 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~~----~~lv~~L~~s~~~~y~ef~~-----v~~~~~~~~~g~l~~vP~s~~~vf~~-~~l  170 (539)
                           ..+.+|. ||+.+...    ..+.+++.+.|+...+....     ....+++. +|++.++|.+...++.. ..+
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~  122 (477)
T 3nks_A           50 -----NGAIFEL-GPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYV-GGALHALPTGLRGLLRPSPPF  122 (477)
T ss_dssp             -----TSCEEES-SCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEE-TTEEEECCCSSCC---CCTTS
T ss_pred             -----CCeEEEe-CCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEE-CCEEEECCCChhhcccccchh
Confidence                 1244566 46665443    24567777777754332211     11234454 78888888764333321 111


Q ss_pred             ChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH---HHHhcccCCcchhhhhccc
Q 009226          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL---YAIAMADYDQEVSEYVLKT  247 (539)
Q Consensus       171 s~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~---~~i~l~~~~~~~~~~~~s~  247 (539)
                      ..   ..+.+.+   .....  +        .....+.++.+|+++..-.+....++.   .++.    ..+.  .+++.
T Consensus       123 ~~---~~~~~~~---~~~~~--~--------~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~--~~ls~  180 (477)
T 3nks_A          123 SK---PLFWAGL---RELTK--P--------RGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVF----AGNS--RELSI  180 (477)
T ss_dssp             CS---CSSHHHH---TTTTS--C--------CCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHHHH----SSCT--TTBBH
T ss_pred             hh---HHHHHHH---Hhhhc--C--------CCCCCCcCHHHHHHHhhCHHHHHHHHHHHhcccc----cCCH--HHhhH
Confidence            11   1111111   11110  0        112345789999986222222222221   1221    1121  23555


Q ss_pred             hhHHHHHHHHHHhhhh-----c-----------------cCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEE
Q 009226          248 RDGINRLALYNSSIGR-----F-----------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL  305 (539)
Q Consensus       248 ~~~l~~i~~~l~s~g~-----~-----------------g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I  305 (539)
                      ...+..+..+....+.     +                 ......++++++|++.|+++|++.+...|++|++|++|++|
T Consensus       181 ~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i  260 (477)
T 3nks_A          181 RSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGL  260 (477)
T ss_dssp             HHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEE
Confidence            5554443332211110     0                 00011367999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceE
Q 009226          306 LTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFL  384 (539)
Q Consensus       306 ~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~  384 (539)
                      ..+  +++.+.|++ +|+++.||+||++ |.+.+..++.+..+++.+   .+ ....+..+....+.++.++.+.. ..-
T Consensus       261 ~~~--~~~~~~v~~-~~~~~~ad~vv~a~p~~~~~~ll~~~~~~~~~---~l-~~~~~~~~~~v~l~~~~~~~~~~-~~g  332 (477)
T 3nks_A          261 SLQ--AEGRWKVSL-RDSSLEADHVISAIPASVLSELLPAEAAPLAR---AL-SAITAVSVAVVNLQYQGAHLPVQ-GFG  332 (477)
T ss_dssp             EEC--GGGCEEEEC-SSCEEEESEEEECSCHHHHHHHSCGGGHHHHH---HH-HTCCEEEEEEEEEEETTCCCSSC-SSE
T ss_pred             EEc--CCceEEEEE-CCeEEEcCEEEECCCHHHHHHhccccCHHHHH---HH-hcCCCCcEEEEEEEECCCCCCCC-Cce
Confidence            876  444457765 6778999999975 443323332222222222   22 22244556666667888765433 234


Q ss_pred             EEeCCCCCCCCCCceEEEEEeCCC--CccC-CCCcEEEEEEE
Q 009226          385 VIFPPRSLFPEQVTSIRVLQLGGN--LAVC-PLGMFVLYFSA  423 (539)
Q Consensus       385 ~~~p~~~~~~~~~~~v~v~~~ss~--~~~c-P~G~~vi~~st  423 (539)
                      .++|+..     +..+....+.+.  .+.. |+|..++.+..
T Consensus       333 ~l~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~  369 (477)
T 3nks_A          333 HLVPSSE-----DPGVLGIVYDSVAFPEQDGSPPGLRVTVML  369 (477)
T ss_dssp             EECCTTT-----CSSEEEEECHHHHCGGGSTTTTCEEEEEEE
T ss_pred             EEccCCC-----CCCceEEEEeccccCCCCCCCCceEEEEEE
Confidence            4555432     122333344332  2222 33777775554

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.86  E-value=1.9e-20  Score=202.21  Aligned_cols=360  Identities=13%  Similarity=0.083  Sum_probs=197.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      ..+||||||||++||+||+.|+++|++|+|||+++++||+++|+..++                                
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g--------------------------------   59 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG--------------------------------   59 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT--------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC--------------------------------
Confidence            468999999999999999999999999999999999999999976533                                


Q ss_pred             ccCCCCCeEEecCCCEEEec-ChHHHHHHhcCCccccccccccc-ceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226          101 LSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~v~-~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                             +.+|. |++++.. ...+.+++.+.|+.....|.... ..+++ .+|+...+|.+..+++....++..+|..+
T Consensus        60 -------~~~~~-g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~~  130 (504)
T 1sez_A           60 -------LIWDE-GANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIA-RNGTPVLLPSNPIDLIKSNFLSTGSKLQM  130 (504)
T ss_dssp             -------EEEES-SCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEE-SSSSEEECCSSHHHHHHSSSSCHHHHHHH
T ss_pred             -------eEEec-CCcccccCcHHHHHHHHHcCCcccceeccCCCceEEE-ECCeEEECCCCHHHHhccccCCHHHHHHH
Confidence                   34566 4666543 34677888888887666554322 23344 48888899988777666555655444332


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHhcccCCcchhhhhccchhHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGINRLALY  257 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~i~~~  257 (539)
                      ..  ......... .     .  .....+.++.+|+++..-++.++.++. +.....  ..++  .++++...+..+..+
T Consensus       131 ~~--~~~~~~~~~-~-----~--~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~~~~~~~~~  196 (504)
T 1sez_A          131 LL--EPILWKNKK-L-----S--QVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTC--GGDP--DSLSMHHSFPELWNL  196 (504)
T ss_dssp             HT--HHHHC------------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHH--SCCG--GGSBHHHHCHHHHHH
T ss_pred             hH--hhhccCccc-c-----c--ccCCCCccHHHHHHHHcCHHHHHHHHHHHHcccc--CCCh--HHhhHHHHhHHHHHH
Confidence            11  111100000 0     0  012345899999986432333333332 111111  1121  234554433322221


Q ss_pred             HHh------------hhhccC-------------CCccEEeecCCcChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCC
Q 009226          258 NSS------------IGRFQN-------------ALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS  311 (539)
Q Consensus       258 l~s------------~g~~g~-------------~~ga~lyp~gG~geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~  311 (539)
                      ...            +...+.             ....+.+++||+++|+++|++   .+| ++|++|++|++|..+  +
T Consensus       197 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~--~  271 (504)
T 1sez_A          197 EKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCS--C  271 (504)
T ss_dssp             HHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEE--C
T ss_pred             HHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEec--C
Confidence            111            001000             001256899999999998875   456 899999999999887  3


Q ss_pred             Cc-----EEEEEeC--CC---cEEEcCEEEEC-CCCCCCCCCc-ccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC-
Q 009226          312 GS-----YKGVRLA--SG---QDILSHKLVLD-PSFTVPGSLA-SSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-  378 (539)
Q Consensus       312 g~-----~~gV~l~--~G---~~i~Ad~VI~~-p~~~~~~l~~-~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~-  378 (539)
                      ++     .+.|++.  +|   +++.||+||++ |...+..++. +..++++...  + .......+.+..+.+++++-+ 
T Consensus       272 ~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~--l-~~~~~~~~~~v~l~~~~~~~~~  348 (504)
T 1sez_A          272 TEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNF--I-PEVDYVPLSVVITTFKRENVKY  348 (504)
T ss_dssp             SSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTT--S-CCCCEEEEEEEEEEEEGGGBSS
T ss_pred             CCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHH--H-hcCCCCceEEEEEEEchhhcCC
Confidence            33     2456554  45   67899999975 3333233321 0001122111  1 222334566666667776422 


Q ss_pred             CCCceEEEeCCCCCCCCCCceEEEEEeC--CCCccCCCCcEEEEEEEeeccc-----cchHHHHHHHHHHHHhh
Q 009226          379 DLSNFLVIFPPRSLFPEQVTSIRVLQLG--GNLAVCPLGMFVLYFSALCDEV-----NQGKKLLHAALSALQKL  445 (539)
Q Consensus       379 ~~~~~~~~~p~~~~~~~~~~~v~v~~~s--s~~~~cP~G~~vi~~st~~~~~-----~~~~~~l~~~~~~l~~~  445 (539)
                      ......+.+|+....  ....++...++  ..+..+|+|..++...+.....     ...++.++.+++.|-..
T Consensus       349 ~~~~~~~l~~~~~~~--~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~  420 (504)
T 1sez_A          349 PLEGFGVLVPSKEQQ--HGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQL  420 (504)
T ss_dssp             CCCSSEEECCGGGGG--GTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCC--CCCccceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHH
Confidence            223345566643210  00011111222  2234679898776554432211     12345555555555443

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.86  E-value=1.1e-21  Score=211.80  Aligned_cols=244  Identities=16%  Similarity=0.142  Sum_probs=141.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      .+||||||||++||+||++|+++ |++|+|||+++++||+++|+...                                 
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~---------------------------------   56 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTP---------------------------------   56 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECT---------------------------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEec---------------------------------
Confidence            58999999999999999999984 99999999999999999985321                                 


Q ss_pred             ccCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccce-eeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~-~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                           .+|.+|. ||++++... .+.+++.+.+... .+|...++. +++. +|+++++|... .+   ..+....+...
T Consensus        57 -----~G~~~D~-G~h~~~~~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~~-~g~~~~~p~~~-~~---~~~~~~~~~~~  124 (513)
T 4gde_A           57 -----EGFLYDV-GGHVIFSHYKYFDDCLDEALPKE-DDWYTHQRISYVRC-QGQWVPYPFQN-NI---SMLPKEEQVKC  124 (513)
T ss_dssp             -----TSCEEES-SCCCCCCCBHHHHHHHHHHSCSG-GGEEEEECCEEEEE-TTEEEESSGGG-GG---GGSCHHHHHHH
T ss_pred             -----CCEEEEe-CceEecCCCHHHHHHHHHhCCcc-ceeEEecCceEEEE-CCeEeecchhh-hh---hhcchhhHHHH
Confidence                 2356677 588876665 4555555544321 234333332 3443 78888888531 11   12222222222


Q ss_pred             -HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH--HHHhcccCCcchhhhhccchhHH----
Q 009226          179 -MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGI----  251 (539)
Q Consensus       179 -~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~--~~i~l~~~~~~~~~~~~s~~~~l----  251 (539)
                       ..++.......            .......++.+|+.+.. .+.+.+.+.  +.-.....+.    .++++..+.    
T Consensus       125 ~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~----~~ls~~~~~~~~~  187 (513)
T 4gde_A          125 IDGMIDAALEAR------------VANTKPKTFDEWIVRMM-GTGIADLFMRPYNFKVWAVPT----TKMQCAWLGERVA  187 (513)
T ss_dssp             HHHHHHHHHHHH------------TCCSCCCSHHHHHHHHH-HHHHHHHTHHHHHHHHHSSCG----GGBCSGGGCSSCC
T ss_pred             HHHHHHHHHhhh------------cccccccCHHHHHHHhh-hhhhhhhhcchhhhhhccCCh----HHhhHHHHHHhhc
Confidence             12222111110            01223467788776421 122222111  1111111111    112222111    


Q ss_pred             -----HHHHHHHHh--hhhccCCCccEEee-cCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc
Q 009226          252 -----NRLALYNSS--IGRFQNALGALIYP-IYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ  323 (539)
Q Consensus       252 -----~~i~~~l~s--~g~~g~~~ga~lyp-~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~  323 (539)
                           ..+...+..  .+.++.. ..+.+| ++|++.|+++|++.+...|+++++|++|++|..+  ++   .|++.+|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~--~~---~v~~~~G~  261 (513)
T 4gde_A          188 APNLKAVTTNVILGKTAGNWGPN-ATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN--NK---TVTLQDGT  261 (513)
T ss_dssp             CCCHHHHHHHHHHTCCCCSCBTT-BEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT--TT---EEEETTSC
T ss_pred             ccchhhhhhhhhhcccccccccc-cceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc--CC---EEEEcCCC
Confidence                 111111110  0111111 224455 8999999999999999999999999999999764  44   35578999


Q ss_pred             EEEcCEEEEC
Q 009226          324 DILSHKLVLD  333 (539)
Q Consensus       324 ~i~Ad~VI~~  333 (539)
                      ++.||+||++
T Consensus       262 ~~~ad~vI~t  271 (513)
T 4gde_A          262 TIGYKKLVST  271 (513)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEECCEEEEC
Confidence            9999999975

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.85  E-value=7.4e-21  Score=205.01  Aligned_cols=295  Identities=15%  Similarity=0.117  Sum_probs=176.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      +||||||||++||+||..|+++|++|+|||+++++||++.|++.++                                  
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g----------------------------------   85 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDG----------------------------------   85 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETT----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCC----------------------------------
Confidence            8999999999999999999999999999999999999999976532                                  


Q ss_pred             CCCCCeEEecCCCEEEec-ChHHHHHHhcCCccccccccc----ccceeeEccC--CceeecCCCHHHHHhccCCChhhH
Q 009226          103 QHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS----IDATFMLDAD--AKLCSVPDSRAAIFKDKSLGLMEK  175 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~----v~~~~~~~~~--g~l~~vP~s~~~vf~~~~ls~~ek  175 (539)
                           +.+|+ |++++.. ...+.+++.+.|+.+.+....    ....+++. +  |+...+|..  +...      .-.
T Consensus        86 -----~~~d~-G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~--~~~~------~~~  150 (495)
T 2vvm_A           86 -----YPYEM-GGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLR-TNPTTSTYMTHE--AEDE------LLR  150 (495)
T ss_dssp             -----EEEEC-SCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEE-SSTTCCEEECHH--HHHH------HHH
T ss_pred             -----eeecC-CCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEec-CCCCceeecCHH--HHHH------HHH
Confidence                 44566 4776643 346777777778754433321    12233333 3  555565541  1110      001


Q ss_pred             HHHHHHHH----HHHhhcccCccccccccccccccCCcHHHHHHhcC--CChhHHHHHHHHHhcccCCcchhhhhccchh
Q 009226          176 NQLMRFFK----LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK--LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (539)
Q Consensus       176 ~~l~kfl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~--l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~  249 (539)
                      ..+.+|++    ..+..... +...........+.+.++.+||++++  +++.++.++...+... +..+.  ..+++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~  226 (495)
T 2vvm_A          151 SALHKFTNVDGTNGRTVLPF-PHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLC-SGGTL--ENSSFGE  226 (495)
T ss_dssp             HHHHHHHCSSSSTTTTTCSC-TTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHH-HSSCT--TTSBHHH
T ss_pred             HHHHHHHccchhhhhhcCCC-CCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHh-cCCCc--chhhHHH
Confidence            11222222    11111000 00000000112345789999999877  8888777664322111 11111  2245544


Q ss_pred             HHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcC
Q 009226          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (539)
Q Consensus       250 ~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad  328 (539)
                      .+..+......+..+... ..++++++|+++|+++|.+.+...| ++|+++++|++|..+  ++. +.|++.+|++++||
T Consensus       227 ~~~~~~~~~~~~~~~~~~-~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad  302 (495)
T 2vvm_A          227 FLHWWAMSGYTYQGCMDC-LMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE--RDA-ARVTARDGREFVAK  302 (495)
T ss_dssp             HHHHHHHTTSSHHHHHHH-HHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC--SSS-EEEEETTCCEEEEE
T ss_pred             HHHHHHHcCCCHHHHHhh-hceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcC
Confidence            443322110011100000 1145789999999999999998888 999999999999875  444 46888888899999


Q ss_pred             EEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                      +||++ |...+..+  .++|++|..+....+...+..+.+..+.++.++
T Consensus       303 ~vI~a~~~~~l~~i--~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~  349 (495)
T 2vvm_A          303 RVVCTIPLNVLSTI--QFSPALSTERISAMQAGHVSMCTKVHAEVDNKD  349 (495)
T ss_dssp             EEEECCCGGGGGGS--EEESCCCHHHHHHHHHCCCCCCEEEEEEESCGG
T ss_pred             EEEECCCHHHHhhe--eeCCCCCHHHHHHHHhcCCCceeEEEEEECCcc
Confidence            99975 43333333  245666655443333444566778887788865

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.81  E-value=2.3e-19  Score=193.09  Aligned_cols=343  Identities=13%  Similarity=0.114  Sum_probs=187.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCcccc-chhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSL-SIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      ..+||+|||||++||++|..|+++| ++|+|+|+++++||++.++ ..+                               
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   56 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDEN-------------------------------   56 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTT-------------------------------
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCC-------------------------------
Confidence            4689999999999999999999999 8999999999999999985 322                               


Q ss_pred             ccccCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~  177 (539)
                              .+.+|. |++.++... .+.+++.+.. .++.....  ..+++. +|+++.+|....  +  ..++..++..
T Consensus        57 --------g~~~~~-g~~~~~~~~~~~~~l~~~~~-~~~~~~~~--~~~~~~-~g~~~~~P~~~~--~--~~l~~~~~~~  119 (484)
T 4dsg_A           57 --------GFTWDL-GGHVIFSHYQYFDDVMDWAV-QGWNVLQR--ESWVWV-RGRWVPYPFQNN--I--HRLPEQDRKR  119 (484)
T ss_dssp             --------SCEEES-SCCCBCCSBHHHHHHHHHHC-SCEEEEEC--CCEEEE-TTEEEESSGGGC--G--GGSCHHHHHH
T ss_pred             --------CcEEee-CCcccccChHHHHHHHHHHh-hhhhhccC--ceEEEE-CCEEEEeCccch--h--hhCCHHHHHH
Confidence                    244566 366555444 3444444432 33332222  123333 789999884211  1  2233333322


Q ss_pred             -HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHH----HHHHHHHhcccCCcchhhhhccchhHH-
Q 009226          178 -LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK----SIVLYAIAMADYDQEVSEYVLKTRDGI-  251 (539)
Q Consensus       178 -l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~----~~l~~~i~l~~~~~~~~~~~~s~~~~l-  251 (539)
                       +..++.. ...             .....+.++.+|+.+. +.+.+.    ..+...+..  .+.    .++++..++ 
T Consensus       120 ~~~~ll~~-~~~-------------~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~--~~~----~~ls~~~~~~  178 (484)
T 4dsg_A          120 CLDELVRS-HAR-------------TYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWA--VPP----CLMSTEWVEE  178 (484)
T ss_dssp             HHHHHHHH-HHC-------------CCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHS--SCG----GGBCSSSCTT
T ss_pred             HHHHHHHH-Hhc-------------cCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcC--CCH----HHhcHHHHhc
Confidence             2233332 100             0123457899998753 111111    111112111  111    123332211 


Q ss_pred             -------HH-HHHHHHhhhh--ccCCCccEEeec-CCcChHHHHHHHHHHHCCcEEEeC--CcceEEEEecCCCcEEEEE
Q 009226          252 -------NR-LALYNSSIGR--FQNALGALIYPI-YGQGELPQAFCRRAAVKGCLYVLR--MPVISLLTDQNSGSYKGVR  318 (539)
Q Consensus       252 -------~~-i~~~l~s~g~--~g~~~ga~lyp~-gG~geL~qal~r~~a~~Gg~i~L~--~~V~~I~~~~~~g~~~gV~  318 (539)
                             .. +...+.....  ++ ..+.|.||. ||++.|+++|++.+..  ..|+++  ++|++|..+  ++   +|+
T Consensus       179 r~~~~~l~~~~~~~~~~~~~~~~~-~~~~f~yp~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~--~~---~v~  250 (484)
T 4dsg_A          179 RVAPVDLERIRRNIQENRDDLGWG-PNATFRFPQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD--AK---TIT  250 (484)
T ss_dssp             TSCCCCHHHHHHHHHHTCCCCCCS-TTSEEEEESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT--TT---EEE
T ss_pred             cccCCCHHHHHHHHhhcccccCCC-ccceEEeecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec--CC---EEE
Confidence                   11 1111111000  11 123478886 7999999998875432  389999  569999765  44   355


Q ss_pred             eCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC-CCceEEEeCCCCCCCCC
Q 009226          319 LASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD-LSNFLVIFPPRSLFPEQ  396 (539)
Q Consensus       319 l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~-~~~~~~~~p~~~~~~~~  396 (539)
                      +++|+++.||+||++ |...+..++.+..+++++..........+..+....+.++.+.... +....+.+|....    
T Consensus       251 ~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~----  326 (484)
T 4dsg_A          251 FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTS----  326 (484)
T ss_dssp             ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTC----
T ss_pred             ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCC----
Confidence            689999999999975 3332222221111122332222222334555555556677764321 2345667775432    


Q ss_pred             CceEEEEEeCCC-CccCCCCcEEEEEEEeecc--ccchHHHHHHHHHHHHhh
Q 009226          397 VTSIRVLQLGGN-LAVCPLGMFVLYFSALCDE--VNQGKKLLHAALSALQKL  445 (539)
Q Consensus       397 ~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~~--~~~~~~~l~~~~~~l~~~  445 (539)
                       +...+..+++- ...+|+|+.++.+......  ..+-+++++.+++-|...
T Consensus       327 -~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~  377 (484)
T 4dsg_A          327 -PFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLAS  377 (484)
T ss_dssp             -SCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHT
T ss_pred             -eEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHc
Confidence             23455556554 4679999888876643321  123356777777777653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.76  E-value=6e-18  Score=183.46  Aligned_cols=278  Identities=15%  Similarity=0.147  Sum_probs=152.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      +..+||||||||++||+||..|+++| ++|+|||+++++||++.|+...                               
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------------------   54 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------------------   54 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------------------
Confidence            45689999999999999999999999 9999999999999999996541                               


Q ss_pred             ccccCCCCCeEEecCCCEEEecC--hHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCCh-hhH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL-MEK  175 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~--~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~-~ek  175 (539)
                             ..+.+|+ |++++...  .++.+++.+.++....      ..+.+ .+|+...++.+...+........ .-.
T Consensus        55 -------~G~~~D~-G~~~~~~~~~~~~~~~~~~lg~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (516)
T 1rsg_A           55 -------QGRKYDI-GASWHHDTLTNPLFLEEAQLSLNDGR------TRFVF-DDDNFIYIDEERGRVDHDKELLLEIVD  119 (516)
T ss_dssp             -------GGCEEES-SCCEECCTTTCHHHHHHHHHHHHHCC------CCEEC-CCCCCEEEETTTEECTTCTTTCHHHHH
T ss_pred             -------CCcEEec-CCeEEecCCCChHHHHHHHhCCCCcc------eeEEE-CCCCEEEEcCCCccccccHHHHHHHHH
Confidence                   1245677 57777532  3455555444431110      01111 13333222221111100000000 001


Q ss_pred             HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhc----ccCCcchhhhhc
Q 009226          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAM----ADYDQEVSEYVL  245 (539)
Q Consensus       176 ~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~------~l~~~l~~~l~~~i~l----~~~~~~~~~~~~  245 (539)
                      ..+.++....   ...          .....+.++.+|++++      .+++....++...+..    .....    ..+
T Consensus       120 ~~~~~~~~~~---~~~----------~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~----~~~  182 (516)
T 1rsg_A          120 NEMSKFAELE---FHQ----------HLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDW----KLL  182 (516)
T ss_dssp             HHHHHHHHHH---C-----------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCT----TTS
T ss_pred             HHHHHHHHHH---hhh----------ccCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCCh----HHC
Confidence            1122222111   000          0112357788877642      2333222221111100    01111    112


Q ss_pred             cchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEE
Q 009226          246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI  325 (539)
Q Consensus       246 s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i  325 (539)
                      +....          +....   +...++++ ++.|+++|++.+  .+++|++|++|++|..+  ++..+.|++.+|+++
T Consensus       183 s~~~~----------~~~~~---~~~~~~~g-~~~l~~~l~~~l--~~~~i~~~~~V~~I~~~--~~~~v~v~~~~g~~~  244 (516)
T 1rsg_A          183 SAKDT----------YFGHQ---GRNAFALN-YDSVVQRIAQSF--PQNWLKLSCEVKSITRE--PSKNVTVNCEDGTVY  244 (516)
T ss_dssp             BHHHH----------CCCCS---SCCEEESC-HHHHHHHHHTTS--CGGGEETTCCEEEEEEC--TTSCEEEEETTSCEE
T ss_pred             ChHHH----------Hhhcc---CcchhhhC-HHHHHHHHHHhC--CCCEEEECCEEEEEEEc--CCCeEEEEECCCcEE
Confidence            22110          00111   11346777 888888776533  24689999999999875  333467888899999


Q ss_pred             EcCEEEEC-CCCCCCCC---------CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226          326 LSHKLVLD-PSFTVPGS---------LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (539)
Q Consensus       326 ~Ad~VI~~-p~~~~~~l---------~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~  378 (539)
                      +||+||++ |...+...         ...+.|+||..+....++..++.+.+.++.+++++=+
T Consensus       245 ~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~  307 (516)
T 1rsg_A          245 NADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWS  307 (516)
T ss_dssp             EEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSC
T ss_pred             ECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCC
Confidence            99999975 33222110         1246677888776665666788899999999999743

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.74  E-value=1.2e-16  Score=171.28  Aligned_cols=286  Identities=11%  Similarity=0.091  Sum_probs=156.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      ..+||+|||+|++||++|..|++.|+ +|+|+|+++++||++.+....+                               
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~-------------------------------   51 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG-------------------------------   51 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT-------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCC-------------------------------
Confidence            46899999999999999999999999 8999999999999999975432                               


Q ss_pred             cccCCCCCeEEecCCCEEEec-----ChHHHHHHhc-CCccccc-ccccccceeeEccCCceeecCCCHHHHHhccCCCh
Q 009226          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLK-SGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~-----~~~lv~~L~~-s~~~~y~-ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~  172 (539)
                              +.+|+ |++++..     ...+.+++.+ .++.... .|... ..+++..+|+..+.+.. ...+.      
T Consensus        52 --------~~~d~-g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~------  114 (472)
T 1b37_A           52 --------INVEL-GANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYL-AQNVYKEDGGVYDEDYV-QKRIE------  114 (472)
T ss_dssp             --------EEEES-SCCEEEEESSSSCCTHHHHHHTTSCCCEEECCCTTG-GGCEECSSSSBCCHHHH-HHHHH------
T ss_pred             --------cEEee-CCeEEeccCCCCCCHHHHHHHhhcCCceeeccCccc-cceeEcCCCCCCCHHHH-HHHHH------
Confidence                    34566 4666642     2356777777 6765432 12221 11233335655432110 01110      


Q ss_pred             hhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHH--HHHhcC---CChhHHHHHHHHH-hc-ccCCcchhhhhc
Q 009226          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE--FLTKMK---LPHKIKSIVLYAI-AM-ADYDQEVSEYVL  245 (539)
Q Consensus       173 ~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--fL~~~~---l~~~l~~~l~~~i-~l-~~~~~~~~~~~~  245 (539)
                       ....+.+|...+.....           ..++.+.++.+  ++.+..   ....+..++.... .+ ...+.    ..+
T Consensus       115 -~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  178 (472)
T 1b37_A          115 -LADSVEEMGEKLSATLH-----------ASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPP----RVT  178 (472)
T ss_dssp             -HHHHHHHHHHHHHHTSC-----------TTCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCG----GGB
T ss_pred             -HHHHHHHHHHHHHHhhc-----------cccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccc----ccc
Confidence             00112222222211110           01123344433  454322   1112222222111 00 01111    112


Q ss_pred             cchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHC--------CcEEEeCCcceEEEEecCCCcEEEE
Q 009226          246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK--------GCLYVLRMPVISLLTDQNSGSYKGV  317 (539)
Q Consensus       246 s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~--------Gg~i~L~~~V~~I~~~~~~g~~~gV  317 (539)
                      +...... ...|    ..++.. ..+.++++|++.|+++|++.+...        |++|+++++|++|..+  ++++ .|
T Consensus       179 s~~~~~~-~~~~----~~~~~~-~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~--~~~v-~v  249 (472)
T 1b37_A          179 SLQNTVP-LATF----SDFGDD-VYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS--PGGV-TV  249 (472)
T ss_dssp             BSTTTSS-CHHH----HHHCSE-EEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC--SSCE-EE
T ss_pred             chhhccc-cccc----cccCCc-eeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc--CCcE-EE
Confidence            2211110 0111    112211 113345899999999998766543        7899999999999876  4554 58


Q ss_pred             EeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009226          318 RLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (539)
Q Consensus       318 ~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~  379 (539)
                      ++.+|++++||+||++ |...+..+...+.|+||+.+....++..++.+.+..+.+++|+-+.
T Consensus       250 ~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~  312 (472)
T 1b37_A          250 KTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPE  312 (472)
T ss_dssp             EETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCC
T ss_pred             EECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCC
Confidence            8889999999999975 4333233222355667665443333344666778888889886543

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.72  E-value=1.6e-16  Score=167.66  Aligned_cols=287  Identities=15%  Similarity=0.108  Sum_probs=156.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (539)
                      +||||||||++|++||..|+++|++|+|||+++++||++.+.+..-.                                 
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~ci---------------------------------   48 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNV---------------------------------   48 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSS---------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCC---------------------------------
Confidence            79999999999999999999999999999999999999988654310                                 


Q ss_pred             CCCCCeEEecCCCEEEec--ChHHHHHHhcCCcccccccccccceeeE-ccCCceeec-CCCHHHHHhccCCChhhHHHH
Q 009226          103 QHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLCSV-PDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus       103 ~~~~~f~ldl~Gp~ll~~--~~~lv~~L~~s~~~~y~ef~~v~~~~~~-~~~g~l~~v-P~s~~~vf~~~~ls~~ek~~l  178 (539)
                         ..+.+++ |++++..  ...+.+++.+.|+........  ....+ ..++++... |... +..      ..-+..+
T Consensus        49 ---pg~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~  115 (431)
T 3k7m_X           49 ---PGLRVEI-GGAYLHRKHHPRLAAELDRYGIPTAAASEF--TSFRHRLGPTAVDQAFPIPG-SEA------VAVEAAT  115 (431)
T ss_dssp             ---TTCEEES-SCCCBCTTTCHHHHHHHHHHTCCEEECCCC--CEECCBSCTTCCSSSSCCCG-GGH------HHHHHHH
T ss_pred             ---CCceEec-CCeeeCCCCcHHHHHHHHHhCCeeeecCCC--CcEEEEecCCeecCCCCCCH-HHH------HHHHHHH
Confidence               1223455 3554433  234555665555542211111  11111 112222211 1111 100      0111223


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHh-cccCCcchhhhhccchhHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA-MADYDQEVSEYVLKTRDGINRLALY  257 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~-l~~~~~~~~~~~~s~~~~l~~i~~~  257 (539)
                      .+++..........+..   .....+. +.++.+|+++.+.++..+.++...+. ......    .+++....+..+...
T Consensus       116 ~~l~~~~~~~~~~~~~~---~~~~~~~-d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~  187 (431)
T 3k7m_X          116 YTLLRDAHRIDLEKGLE---NQDLEDL-DIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPA----DQASALWMLQLVAAH  187 (431)
T ss_dssp             HHHHHHHTTCCTTTCTT---SSSCGGG-CSBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCT----TTSBHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCcc---Ccchhhh-cCCHHHHHHhcCCCHHHHHHHHHHHHHhcCCCh----hhhhHHHHHHHHHhc
Confidence            33433333221111100   0111222 38999999998888877765432111 111111    123444433222211


Q ss_pred             HHhhh--hccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-C
Q 009226          258 NSSIG--RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-P  334 (539)
Q Consensus       258 l~s~g--~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p  334 (539)
                      -..+.  ..+   ... ++.+|++.+++++.   +..| +|++|++|++|..+  ++. +.|++.+|+++.||+||+. |
T Consensus       188 ~~~~~~~~~~---~~~-~~~~g~~~l~~~~~---~~~g-~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          188 HYSILGVVLS---LDE-VFSNGSADLVDAMS---QEIP-EIRLQTVVTGIDQS--GDV-VNVTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             TSCHHHHHHT---CCE-EETTCTHHHHHHHH---TTCS-CEESSCCEEEEECS--SSS-EEEEETTSCCEEEEEEEECSC
T ss_pred             CCccceeecc---hhh-hcCCcHHHHHHHHH---hhCC-ceEeCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            00000  111   113 77899998888664   4566 99999999999865  444 4588888988999999975 3


Q ss_pred             CCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          335 SFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       335 ~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                      ...+..+  .+.|++|..+.........+...+...-++.++
T Consensus       257 ~~~l~~i--~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~  296 (431)
T 3k7m_X          257 MNTWRRI--VFTPALPERRRSVIEEGHGGQGLKILIHVRGAE  296 (431)
T ss_dssp             GGGGGGS--EEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC
T ss_pred             cchHhhe--eeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC
Confidence            2222222  245566654443333334556677777778876

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.71  E-value=3.8e-16  Score=168.27  Aligned_cols=284  Identities=12%  Similarity=0.080  Sum_probs=156.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      ..+||||||||++||+||..|++.|++|+|||+++++||++.++....                                
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~--------------------------------   79 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE--------------------------------   79 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT--------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCC--------------------------------
Confidence            458999999999999999999999999999999999999998865311                                


Q ss_pred             ccCCCCCeEEecCCCEEEecCh-HHHHHHhcCCccccccccccc-ceeeEccCCceeecCC---CHHHHHhccCCChhhH
Q 009226          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPD---SRAAIFKDKSLGLMEK  175 (539)
Q Consensus       101 ~~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~-~~~~~~~~g~l~~vP~---s~~~vf~~~~ls~~ek  175 (539)
                           ..+.+|+ |++.+.... .+.+++.+.|+... .|...+ ..++.. +|...+.+.   .. ..+. ..+.+.++
T Consensus        80 -----~~~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~-~~~~~~~~  149 (498)
T 2iid_A           80 -----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDP-GLLK-YPVKPSEA  149 (498)
T ss_dssp             -----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCG-GGGC-CCCCGGGT
T ss_pred             -----CCchhhc-CcccccchHHHHHHHHHHhCCCce-eecccCCccEEEe-CCeeecccccccCc-cccc-cCCCcccc
Confidence                 1233455 355554433 45556666665321 221111 111111 333221110   00 0000 01111111


Q ss_pred             ----H-----HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC-CChhHHHHHHHHHhcccCCcchhhhhc
Q 009226          176 ----N-----QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVL  245 (539)
Q Consensus       176 ----~-----~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~-l~~~l~~~l~~~i~l~~~~~~~~~~~~  245 (539)
                          .     .+.+++..+....        .......+...++.+|+++.+ +++..+..+...+...  ...    ..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~----~~  215 (498)
T 2iid_A          150 GKSAGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNED--SGY----YV  215 (498)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCG--GGT----TS
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc--------HHHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcc--cch----hH
Confidence                0     1111221111110        001112345578999999865 5665554432211000  000    01


Q ss_pred             cchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc--
Q 009226          246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--  323 (539)
Q Consensus       246 s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~--  323 (539)
                      +..+++...    .... .+   ..+.++.+|++.|+++|++.+   +.+|++|++|++|..+  +++ +.|++.+|+  
T Consensus       216 ~~~~~~~~~----~~~~-~~---~~~~~~~gG~~~l~~~l~~~l---~~~i~~~~~V~~I~~~--~~~-v~v~~~~~~~~  281 (498)
T 2iid_A          216 SFIESLKHD----DIFA-YE---KRFDEIVDGMDKLPTAMYRDI---QDKVHFNAQVIKIQQN--DQK-VTVVYETLSKE  281 (498)
T ss_dssp             BHHHHHHHH----HHHT-TC---CCEEEETTCTTHHHHHHHHHT---GGGEESSCEEEEEEEC--SSC-EEEEEECSSSC
T ss_pred             HHHHHHHHH----hccc-cC---cceEEeCCcHHHHHHHHHHhc---ccccccCCEEEEEEEC--CCe-EEEEEecCCcc
Confidence            111111111    1111 11   226789999999999987654   3489999999999876  444 467666665  


Q ss_pred             --EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          324 --DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       324 --~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                        +++||+||++ |...+..+  .++|+||..+....++..++.+.+.++.+++++
T Consensus       282 ~~~~~ad~vI~t~p~~~~~~i--~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~  335 (498)
T 2iid_A          282 TPSVTADYVIVCTTSRAVRLI--KFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKF  335 (498)
T ss_dssp             CCEEEESEEEECSCHHHHTTS--EEESCCCHHHHHHHHHCCEECEEEEEEEESSCG
T ss_pred             cceEEeCEEEECCChHHHhhe--ecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCC
Confidence              5899999975 33333332  245667766554434455677888888889885

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.70  E-value=2.2e-16  Score=166.38  Aligned_cols=247  Identities=14%  Similarity=0.162  Sum_probs=136.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      ..+||||||||++||+||..|+++| ++|+|+|+++++||+++|++.+|                               
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G-------------------------------   53 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG-------------------------------   53 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT-------------------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC-------------------------------
Confidence            4589999999999999999999999 99999999999999999976543                               


Q ss_pred             cccCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                              +.+|+ |++++... ..+.+++.+.|+...  .......+.+ .+|+.. .|..  +....    ......+
T Consensus        54 --------~~~d~-G~~~~~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~-~~g~~~-~~~~--~~~~~----~~~~~~~  114 (424)
T 2b9w_A           54 --------RRYEM-GAIMGVPSYDTIQEIMDRTGDKVD--GPKLRREFLH-EDGEIY-VPEK--DPVRG----PQVMAAV  114 (424)
T ss_dssp             --------EECCS-SCCCBCTTCHHHHHHHHHHCCCCC--SCCCCEEEEC-TTSCEE-CGGG--CTTHH----HHHHHHH
T ss_pred             --------ccccc-CceeecCCcHHHHHHHHHhCCccc--cccccceeEc-CCCCEe-cccc--Ccccc----hhHHHHH
Confidence                    23344 35554332 356666766665321  1111122222 355543 2211  00000    0011122


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l  258 (539)
                      .++...+.......... .......+....|+.+|+++.+.+. +.+.+...+....+. ++  ..+++...+..+... 
T Consensus       115 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~a~~~~~~~~~~-  188 (424)
T 2b9w_A          115 QKLGQLLATKYQGYDAN-GHYNKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HF--DNVPAAYVLKYLDFV-  188 (424)
T ss_dssp             HHHHHHHHTTTTTTTSS-SSSSCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CT--TTSBHHHHHHHSCHH-
T ss_pred             HHHHHHHhhhhhhcccc-cchhhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-Ch--HhcCHHHHHHhhhHh-
Confidence            33333222211100000 0000112345689999999877764 334322111111121 11  223443332211110 


Q ss_pred             HhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       259 ~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ..+. +..  +...++.+|++++++++.+   ..+.++++|++|++|..+  ++++ .|++.+|+ ++||+||++
T Consensus       189 ~~~~-~~~--~~~~~~~~g~~~l~~~l~~---~l~~~v~~~~~V~~i~~~--~~~v-~v~~~~g~-~~ad~Vv~a  253 (424)
T 2b9w_A          189 TMMS-FAK--GDLWTWADGTQAMFEHLNA---TLEHPAERNVDITRITRE--DGKV-HIHTTDWD-RESDVLVLT  253 (424)
T ss_dssp             HHHH-HHH--TCCBCCTTCHHHHHHHHHH---HSSSCCBCSCCEEEEECC--TTCE-EEEESSCE-EEESEEEEC
T ss_pred             hhhc-ccC--CceEEeCChHHHHHHHHHH---hhcceEEcCCEEEEEEEE--CCEE-EEEECCCe-EEcCEEEEC
Confidence            0011 111  1134778999999997754   567789999999999875  5554 58777775 899999975

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.68  E-value=2.8e-16  Score=168.84  Aligned_cols=302  Identities=14%  Similarity=0.113  Sum_probs=153.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      +..+||+|||||++||+||..|+++|++|+|||+++++||++.++...+  .+....+..                   .
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~--~~~~~~~~~-------------------~   67 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS--EETDLSGET-------------------Q   67 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC--EEECTTSCE-------------------E
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc--ccccccchh-------------------h
Confidence            3468999999999999999999999999999999999999999876532  111000000                   0


Q ss_pred             cccCCCCCeEEecCCCEEEecChHHHHHHhcCCccccccccccc-ceeeE-ccC----CceeecCCCHHHHHhccCCChh
Q 009226          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSID-ATFML-DAD----AKLCSVPDSRAAIFKDKSLGLM  173 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~-~~~~~-~~~----g~l~~vP~s~~~vf~~~~ls~~  173 (539)
                       .......+.++. |+..+.....+.+++.+.|+... .+.... ..+++ ..+    |+..++|....+.+        
T Consensus        68 -~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  136 (489)
T 2jae_A           68 -KCTFSEGHFYNV-GATRIPQSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTF--------  136 (489)
T ss_dssp             -ECCCCTTCEEES-SCCCEETTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHHHH--------
T ss_pred             -hhcccCCCcCCc-chhhcccHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhhhh--------
Confidence             001123455677 47766655577888888877421 122111 12333 222    54444332111100        


Q ss_pred             hHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChh--------HHHHHHHHHhcccCCcchhhhhc
Q 009226          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK--------IKSIVLYAIAMADYDQEVSEYVL  245 (539)
Q Consensus       174 ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~--------l~~~l~~~i~l~~~~~~~~~~~~  245 (539)
                        ..+..++......... .      .......+.++.+|+++++-...        +..++...-.........   ..
T Consensus       137 --~~~~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  204 (489)
T 2jae_A          137 --GYMSELLKKATDQGAL-D------QVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEK---KP  204 (489)
T ss_dssp             --HHHHHHHHHHHHHTTT-T------TTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEEC---CC
T ss_pred             --ccHHHHHHHHHhcccc-c------cccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCC---CC
Confidence              0111111111110000 0      00001123467778776432100        000000000000000000   00


Q ss_pred             cchhHHHH--HHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeCCC
Q 009226          246 KTRDGINR--LALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (539)
Q Consensus       246 s~~~~l~~--i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~~G  322 (539)
                      .....+..  +..++........ .+.+.++++|++.|+++|++.+   + ++|++|++|++|..+  ++++ .|++.+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l---~~~~i~~~~~V~~i~~~--~~~v-~v~~~~g  277 (489)
T 2jae_A          205 FAMQEVIRSGIGRNFSFDFGYDQ-AMMMFTPVGGMDRIYYAFQDRI---GTDNIVFGAEVTSMKNV--SEGV-TVEYTAG  277 (489)
T ss_dssp             CCHHHHHHHTTTTTGGGGGCTTT-SSSEEEETTCTTHHHHHHHHHH---CGGGEETTCEEEEEEEE--TTEE-EEEEEET
T ss_pred             cCHHHHhhhhHHHHHhhhhcccc-CccEEeecCCHHHHHHHHHHhc---CCCeEEECCEEEEEEEc--CCeE-EEEEecC
Confidence            00000000  0001111000111 1236789999999999987754   4 789999999999887  5553 4766666


Q ss_pred             ---cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226          323 ---QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       323 ---~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                         ++++||+||++ |...+..+.  +  ++|+.+....+...+..+.+..+.+++++
T Consensus       278 ~~~~~~~ad~vI~a~p~~~l~~l~--~--~l~~~~~~~l~~~~~~~~~kv~l~~~~~~  331 (489)
T 2jae_A          278 GSKKSITADYAICTIPPHLVGRLQ--N--NLPGDVLTALKAAKPSSSGKLGIEYSRRW  331 (489)
T ss_dssp             TEEEEEEESEEEECSCHHHHTTSE--E--CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred             CeEEEEECCEEEECCCHHHHHhCc--c--CCCHHHHHHHHhCCCccceEEEEEeCCCC
Confidence               67999999975 433334432  1  34433332223334667788888888875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.59  E-value=7.4e-16  Score=161.70  Aligned_cols=231  Identities=14%  Similarity=0.154  Sum_probs=128.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (539)
                      .++||||||||++||+||..|+++ |++|+|+|+++++||++.+...+.                               
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   54 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ-------------------------------   54 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT-------------------------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC-------------------------------
Confidence            469999999999999999999999 999999999999999999976420                               


Q ss_pred             cccCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHH---HHhccCCChhhH
Q 009226          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA---IFKDKSLGLMEK  175 (539)
Q Consensus       100 ~~~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~---vf~~~~ls~~ek  175 (539)
                            .++.+|..|++++... ..+.+++.+.++..  .+.  ...+++ .+|+.+++|.+...   ++.. .+++.  
T Consensus        55 ------~g~~~~~~G~~~~~~~~~~~~~~~~~~g~~~--~~~--~~~~~~-~~G~~~~~p~~~~~~~~l~~~-~~~~~--  120 (399)
T 1v0j_A           55 ------TGIEVHKYGAHLFHTSNKRVWDYVRQFTDFT--DYR--HRVFAM-HNGQAYQFPMGLGLVSQFFGK-YFTPE--  120 (399)
T ss_dssp             ------TCCEEETTSCCCEEESCHHHHHHHTTTCCBC--CCC--CCEEEE-ETTEEEEESSSHHHHHHHHTS-CCCHH--
T ss_pred             ------CCEEEEeCCCcEEcCCcHHHHHHHHHhhhhh--ccc--cceEEE-ECCEEEeCCCCHHHHHHHhcc-cCCHH--
Confidence                  1233431257766543 36677777766521  221  122333 38899999986432   2221 11222  


Q ss_pred             HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHhcccCCcchhhhhccchhHHHHH
Q 009226          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGINRL  254 (539)
Q Consensus       176 ~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~i  254 (539)
                       .+.+++.......             ....+.++.+|+.+..-.+....++. +.-+...  .++  .++++... .++
T Consensus       121 -~~~~~l~~~~~~~-------------~~~~~~s~~e~l~~~~g~~~~~~~~~~~~~~~~~--~~~--~~ls~~~~-~~~  181 (399)
T 1v0j_A          121 -QARQLIAEQAAEI-------------DTADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQ--TDP--KELPAANI-TRL  181 (399)
T ss_dssp             -HHHHHHHHHGGGS-------------CTTC----CCHHHHHHCHHHHHHHTHHHHHHHHT--SCG--GGSCGGGC-SCC
T ss_pred             -HHHHHHHHHhhcc-------------CCCCcccHHHHHHHHHhHHHHHHHHHHHHHhhcC--CCh--hhcChHhh-hcc
Confidence             2222222211100             01234678888876322223333332 2212211  121  22444332 000


Q ss_pred             HHHHHhhhhccCCCccEE-eecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEE-EcCEEEE
Q 009226          255 ALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI-LSHKLVL  332 (539)
Q Consensus       255 ~~~l~s~g~~g~~~ga~l-yp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i-~Ad~VI~  332 (539)
                      .........+..  ..+. +|+||+++|+++|++   ..|++|+||++|++|..   +     |  .   ++ .||+||+
T Consensus       182 ~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~I~~---~-----v--~---~~~~aD~VI~  243 (399)
T 1v0j_A          182 PVRYTFDNRYFS--DTYEGLPTDGYTAWLQNMAA---DHRIEVRLNTDWFDVRG---Q-----L--R---PGSPAAPVVY  243 (399)
T ss_dssp             CCCSSSCCCSCC--CSEEECBTTHHHHHHHHHTC---STTEEEECSCCHHHHHH---H-----H--T---TTSTTCCEEE
T ss_pred             eeEeccccchhh--hhhcccccccHHHHHHHHHh---cCCeEEEECCchhhhhh---h-----h--h---hcccCCEEEE
Confidence            000000001111  1253 999999999998865   57899999999999842   1     2  1   34 6899997


Q ss_pred             C
Q 009226          333 D  333 (539)
Q Consensus       333 ~  333 (539)
                      +
T Consensus       244 t  244 (399)
T 1v0j_A          244 T  244 (399)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.57  E-value=5.3e-14  Score=146.89  Aligned_cols=309  Identities=13%  Similarity=0.123  Sum_probs=167.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc-hhhhhhhhccCCCCCCCCCCCccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (539)
                      ....+||+|||||++||++|..|+++|++|+|+|+++++||++.+.. .+|                             
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G-----------------------------   76 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAG-----------------------------   76 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTS-----------------------------
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCC-----------------------------
Confidence            34579999999999999999999999999999999999999999864 222                             


Q ss_pred             cccccCCCCCeEE-ecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHh--ccCCChh
Q 009226           98 SRLLSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFK--DKSLGLM  173 (539)
Q Consensus        98 ~~~~~~~~~~f~l-dl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~--~~~ls~~  173 (539)
                                +.+ |. ||+++... ..+.+++.+.+...  .+  ....+++. +|+++++|.+...+..  ...+++.
T Consensus        77 ----------~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~-~g~l~~lP~~~~~~~~l~~~~~~~~  140 (397)
T 3hdq_A           77 ----------VLIHPY-GPHIFHTNSKDVFEYLSRFTEWR--PY--QHRVLASV-DGQLLPIPINLDTVNRLYGLNLTSF  140 (397)
T ss_dssp             ----------CEECTT-SCCCCEESCHHHHHHHHTSCCEE--EC--CCBEEEEE-TTEEEEESCCHHHHHHHHTCCCCHH
T ss_pred             ----------ceEeec-CCcccCCChHHHHHHHHHhhhcc--cc--cccceEEE-CCEEEEcCCChHHHHHhhccCCCHH
Confidence                      222 34 46665543 35666666655311  11  12233443 8999999987643211  2223332


Q ss_pred             hHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHH-HHHhcccCCcchhhhhccchhHH
Q 009226          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGI  251 (539)
Q Consensus       174 ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~-~~l~~~l~~~l~-~~i~l~~~~~~~~~~~~s~~~~l  251 (539)
                         .+..++..   ..            .....+.++.+|+.+ ++ .+....++. +.-..  +..++  +++|+... 
T Consensus       141 ---~~~~~l~~---~~------------~~~~~~~s~~e~~~~~~G-~~~~e~~~~py~~k~--~~~~~--~~Lsa~~~-  196 (397)
T 3hdq_A          141 ---QVEEFFAS---VA------------EKVEQVRTSEDVVVSKVG-RDLYNKFFRGYTRKQ--WGLDP--SELDASVT-  196 (397)
T ss_dssp             ---HHHHHHHH---HC------------CCCSSCCBHHHHHHHHHH-HHHHHHHTHHHHHHH--HSSCG--GGSBTTTG-
T ss_pred             ---HHHHHHhh---cc------------cCCCCCcCHHHHHHHhcC-HHHHHHHHHHHhCch--hCCCH--HHHHHHHH-
Confidence               22333331   10            112346789999875 43 222222222 22122  22222  23554321 


Q ss_pred             HHHHHHHHhhhhccCC--CccE-EeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcC
Q 009226          252 NRLALYNSSIGRFQNA--LGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (539)
Q Consensus       252 ~~i~~~l~s~g~~g~~--~ga~-lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad  328 (539)
                      .++..    ...+.+.  .+.| .+|++|.+.|.++|.   +..|++|+||++|.++                ++++.+|
T Consensus       197 ~Rvp~----~~~~d~~yf~~~~qg~P~gGy~~l~e~l~---~~~g~~V~l~~~v~~~----------------~~~~~~d  253 (397)
T 3hdq_A          197 ARVPT----RTNRDNRYFADTYQAMPLHGYTRMFQNML---SSPNIKVMLNTDYREI----------------ADFIPFQ  253 (397)
T ss_dssp             GGSCC----CSSCCCBSCCCSEEEEETTCHHHHHHHHT---CSTTEEEEESCCGGGT----------------TTTSCEE
T ss_pred             HhcCc----ccccCccchhhhheeccCCCHHHHHHHHH---hccCCEEEECCeEEec----------------cccccCC
Confidence            11110    0001110  1224 389999999988764   4679999999999843                2234588


Q ss_pred             EEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCCC
Q 009226          329 KLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN  408 (539)
Q Consensus       329 ~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~  408 (539)
                      +||.+.+.  ..+   ++..    .    .......+......++.+-.+  ....+.+|...      +.-++.++.+-
T Consensus       254 ~vI~T~P~--d~~---~~~~----~----g~L~yrsl~~~~~~~~~~~~~--~~~~vn~~d~~------p~tRi~e~k~~  312 (397)
T 3hdq_A          254 HMIYTGPV--DAF---FDFC----Y----GKLPYRSLEFRHETHDTEQLL--PTGTVNYPNDY------AYTRVSEFKHI  312 (397)
T ss_dssp             EEEECSCH--HHH---TTTT----T----CCCCEEEEEEEEEEESSSCSC--SSSEEECSSSS------SCSEEEEHHHH
T ss_pred             EEEEcCCH--HHH---HHHh----c----CCCCCceEEEEEEEeccccCC--CCeEEEeCCCC------cceEEEeeccc
Confidence            99965321  111   1100    0    111222232222335544222  35678887432      23467777664


Q ss_pred             CccCCCCcEEEEEEEeecc--------ccchHHHHHHHHHH
Q 009226          409 LAVCPLGMFVLYFSALCDE--------VNQGKKLLHAALSA  441 (539)
Q Consensus       409 ~~~cP~G~~vi~~st~~~~--------~~~~~~~l~~~~~~  441 (539)
                      ++. |.++.+|..-..+..        ..+..++++.+.+.
T Consensus       313 ~~~-~~~~t~i~~Ey~~~~~~pyYpv~~~~~~~~~~~y~~~  352 (397)
T 3hdq_A          313 TGQ-RHHQTSVVYEYPRAEGDPYYPVPRPENAELYKKYEAL  352 (397)
T ss_dssp             HCC-CCSSEEEEEEEEESSSSCCEECCSHHHHHHHHHHHHH
T ss_pred             CCC-CCCCEEEEEEECCCCCccccccCchhHHHHHHHHHHH
Confidence            433 456777765544432        23455666666655

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.56  E-value=1.1e-13  Score=143.43  Aligned_cols=47  Identities=17%  Similarity=0.340  Sum_probs=43.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCCccccch
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSLSI   66 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~-~~~GG~~~s~~~   66 (539)
                      +..+||+|||||++||+||+.|+++|++|+|||++ +++||++.++..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~   89 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHA   89 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecc
Confidence            45689999999999999999999999999999999 999999998764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.55  E-value=5.1e-15  Score=153.54  Aligned_cols=226  Identities=13%  Similarity=0.168  Sum_probs=128.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      ++||+|||+|++||++|..|+++|++|+|+|+++++||++.++..++                                 
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g---------------------------------   47 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG---------------------------------   47 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT---------------------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCC---------------------------------
Confidence            37999999999999999999999999999999999999999975432                                 


Q ss_pred             cCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHH
Q 009226          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~k  180 (539)
                            +.+|..||+++.... .+.+++.+.+..  ..+...  ...+ .+|+...+|.+...+...  +.......+.+
T Consensus        48 ------~~~~~~G~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~-~~g~~~~~p~~~~~~~~l--~~~~~~~~~~~  114 (367)
T 1i8t_A           48 ------IQIHKYGAHIFHTNDKYIWDYVNDLVEF--NRFTNS--PLAI-YKDKLFNLPFNMNTFHQM--WGVKDPQEAQN  114 (367)
T ss_dssp             ------EEEETTSCCCEEESCHHHHHHHHTTSCB--CCCCCC--CEEE-ETTEEEESSBSHHHHHHH--HCCCCHHHHHH
T ss_pred             ------ceeeccCCceecCCCHHHHHHHHHhhhh--hhcccc--ceEE-ECCeEEEcCCCHHHHHHH--hccCCHHHHHH
Confidence                  334312577665543 455555544431  122111  1222 378888898875432221  01111223344


Q ss_pred             HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHhcccCCcchhhhhccchhHHHHHHHHH
Q 009226          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (539)
Q Consensus       181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~-~l~-~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l  258 (539)
                      |+......             .....+.++.+|+.+. +.+.+.+ ++. +..+..+.+.    .++++... .++....
T Consensus       115 ~l~~~~~~-------------~~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~----~~lsa~~~-~~l~~~~  175 (367)
T 1i8t_A          115 IINAQKKK-------------YGDKVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSA----KELPAFII-KRIPVRF  175 (367)
T ss_dssp             HHHHHTTT-------------TCCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCG----GGSCTTSS-CCCCBCS
T ss_pred             HHHHHhhc-------------cCCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCCh----HHcCHHHH-hhceeee
Confidence            44432221             0112457899999864 3333333 322 2212222221    22444321 0000000


Q ss_pred             HhhhhccCCCccEE-eecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          259 SSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       259 ~s~g~~g~~~ga~l-yp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ..-..+.  .+.+. +|+||+++|+++|++     |++|+||++|++|.    . +   |      ++.+|+||++
T Consensus       176 ~~~~~~~--~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V~~i~----~-~---v------~~~~D~VV~a  230 (367)
T 1i8t_A          176 TFDNNYF--SDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDFLKDK----D-S---L------ASKAHRIIYT  230 (367)
T ss_dssp             SSCCCSC--CCSEEECBTTCHHHHHHHHHT-----TSEEECSCCGGGSH----H-H---H------HTTEEEEEEC
T ss_pred             ccccccc--cchhhcccCCCHHHHHHHHhc-----CCEEEeCCceeeec----h-h---h------hccCCEEEEe
Confidence            0000111  12354 999999999998865     68999999999883    1 1   2      1358999975

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.51  E-value=1.7e-14  Score=150.57  Aligned_cols=214  Identities=13%  Similarity=0.159  Sum_probs=123.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (539)
                      +++||+|||+|++||++|..|+++|++|+|+|+++++||++.+...+.                                
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~--------------------------------   49 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE--------------------------------   49 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT--------------------------------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC--------------------------------
Confidence            458999999999999999999999999999999999999999875521                                


Q ss_pred             ccCCCCCeEE-ecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhc--cCCChhhHH
Q 009226          101 LSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKD--KSLGLMEKN  176 (539)
Q Consensus       101 ~~~~~~~f~l-dl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~--~~ls~~ek~  176 (539)
                           .++.+ |. |++++... ..+.+++.+.+..  ..+.  ...+++ .+|+.+++|.+...+-..  ..+++   .
T Consensus        50 -----~g~~~~~~-G~~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~~~-~~g~~~~~P~~~~~~~~l~~~~~~~---~  115 (384)
T 2bi7_A           50 -----TNVMVHVY-GPHIFHTDNETVWNYVNKHAEM--MPYV--NRVKAT-VNGQVFSLPINLHTINQFFSKTCSP---D  115 (384)
T ss_dssp             -----TCCEEETT-SCCCEEESCHHHHHHHHTTSCE--EECC--CCEEEE-ETTEEEEESCCHHHHHHHTTCCCCH---H
T ss_pred             -----CCceEeeC-CceEECCCCHHHHHHHHHHhhh--cccc--cceEEE-ECCEEEECCCChhHHHHHhcccCCH---H
Confidence                 12233 44 57766543 3566666666542  1111  122233 378888999875432211  11222   2


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHhcccCCcchhhhhccchhHHHHH
Q 009226          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRL  254 (539)
Q Consensus       177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~-~l~-~~i~l~~~~~~~~~~~~s~~~~l~~i  254 (539)
                      .+.+++......             . ...+.++.+|+.+. +.+.+.+ ++. +..+...  .++  .++++... .++
T Consensus       116 ~~~~~l~~~~~~-------------~-~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~--~~~--~~ls~~~~-~r~  175 (384)
T 2bi7_A          116 EARALIAEKGDS-------------T-IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWG--MQP--SELPASIL-KRL  175 (384)
T ss_dssp             HHHHHHHHHSCC-------------S-CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHS--SCG--GGSBGGGC-CSC
T ss_pred             HHHHHHHHhhhc-------------c-CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhC--CCH--HHhCHHHH-hcc
Confidence            223333322110             0 12457899999865 3344333 322 2222222  221  22443321 000


Q ss_pred             HHHHHhhhhccCCCccEE-eecCCcChHHHHHHHHHHHCCcEEEeCCcce-EE
Q 009226          255 ALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVI-SL  305 (539)
Q Consensus       255 ~~~l~s~g~~g~~~ga~l-yp~gG~geL~qal~r~~a~~Gg~i~L~~~V~-~I  305 (539)
                      .........+..  +.+. +|+||+++|+++|++   ..|++|++|++|+ +|
T Consensus       176 ~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~~i  223 (384)
T 2bi7_A          176 PVRFNYDDNYFN--HKFQGMPKCGYTQMIKSILN---HENIKVDLQREFIVEE  223 (384)
T ss_dssp             CCCSSSCCCSCC--CSEEEEETTHHHHHHHHHHC---STTEEEEESCCCCGGG
T ss_pred             cccccccccccc--ccccEEECcCHHHHHHHHHh---cCCCEEEECCeeehhh
Confidence            000000001111  2354 999999999998864   4789999999999 77

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.49  E-value=2.3e-13  Score=153.56  Aligned_cols=99  Identities=13%  Similarity=0.050  Sum_probs=70.6

Q ss_pred             EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 009226          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (539)
Q Consensus       271 ~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l  349 (539)
                      .....+|++.+.+++++     |..|++|++|++|..+  +++ +.|++.+|+++.||+||+. |...+......+.|+|
T Consensus       526 ~~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~--~~~-v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~L  597 (776)
T 4gut_A          526 HTLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYS--GDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPL  597 (776)
T ss_dssp             EEECTTCTHHHHHHHHT-----TSCEESSCCEEEEECS--SSS-EEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCC
T ss_pred             eEEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEc--CCE-EEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCC
Confidence            45678899999887753     6789999999999876  444 4688889999999999975 4333222112466777


Q ss_pred             hhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          350 QESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       350 ~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      |..+....++...+.+.+.++.+++++-
T Consensus       598 p~~~~~ai~~l~~g~~~KV~l~f~~~FW  625 (776)
T 4gut_A          598 SEKKMKAINSLGAGIIEKIALQFPYRFW  625 (776)
T ss_dssp             CHHHHHHHHHEEEECCEEEEEECSSCTT
T ss_pred             CHHHHHHHHhCCCeeEEEEEEecCcccc
Confidence            7755544344456677888888999864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.42  E-value=2.8e-12  Score=142.95  Aligned_cols=101  Identities=11%  Similarity=-0.031  Sum_probs=72.4

Q ss_pred             cEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCC------CcEEEcCEEEEC-CCCCCCCCC
Q 009226          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGSL  342 (539)
Q Consensus       270 a~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~------G~~i~Ad~VI~~-p~~~~~~l~  342 (539)
                      .+..+++|++.|+++|++     |..|+||++|++|..+  ++. +.|++.+      |+++.||+||++ |...+..+.
T Consensus       392 ~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~--~~~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~  463 (662)
T 2z3y_A          392 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  463 (662)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEE--TTE-EEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEEC--CCc-EEEEEeecccCCCCeEEEeCEEEECCCHHHHhccc
Confidence            356889999999998865     4589999999999987  443 4566544      578999999976 433333210


Q ss_pred             --cccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226          343 --ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (539)
Q Consensus       343 --~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~  378 (539)
                        +.+.|+||..+....++..++.+.+.++.+++++-+
T Consensus       464 ~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~  501 (662)
T 2z3y_A          464 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWD  501 (662)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSC
T ss_pred             CceEEcCCCCHHHHHHHHhCCccceeEEEEEcCccccc
Confidence              236777887655444555677889989899999754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.41  E-value=3.1e-12  Score=145.38  Aligned_cols=102  Identities=12%  Similarity=-0.009  Sum_probs=72.1

Q ss_pred             ccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCC------CcEEEcCEEEEC-CCCCCCCC
Q 009226          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGS  341 (539)
Q Consensus       269 ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~------G~~i~Ad~VI~~-p~~~~~~l  341 (539)
                      |.++.+++|++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |+++.||+||++ |...+..+
T Consensus       562 g~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~--~~g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l  633 (852)
T 2xag_A          562 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQ  633 (852)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEE--TTE-EEEEEEESSSTTCEEEEEESEEEECCCHHHHHCS
T ss_pred             CceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEc--CCc-EEEEEeecccCCCCeEEECCEEEECCCHHHHHhh
Confidence            3467889999999998865     3479999999999987  443 4566544      578999999976 43333331


Q ss_pred             C--cccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226          342 L--ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (539)
Q Consensus       342 ~--~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~  378 (539)
                      .  +.+.|+||..+....++..++.+.+.++.+++++-+
T Consensus       634 ~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~  672 (852)
T 2xag_A          634 PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWD  672 (852)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSC
T ss_pred             hcccccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccC
Confidence            0  236677877655443455577788988889998744

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.36  E-value=1.7e-11  Score=125.16  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=69.9

Q ss_pred             EeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhh
Q 009226          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQ  350 (539)
Q Consensus       272 lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~  350 (539)
                      +.+.+|+..+.+++++..   |++|+++++|++|..+  +++ +.|++.+|+++.||.||+. |......++...++.+|
T Consensus       105 ~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~--~~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~  178 (342)
T 3qj4_A          105 FVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLR--DDK-WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLIS  178 (342)
T ss_dssp             EECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEEC--SSS-EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSC
T ss_pred             eecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccC
Confidence            466889999999887643   8999999999999876  444 4688888888999999964 44333454433344455


Q ss_pred             hhhhhcccCCCcceEEEEEEEecCCC
Q 009226          351 ESFQAFSLSDNKGKVARGICITRSSL  376 (539)
Q Consensus       351 ~~~~~l~~~~~~~~vsr~i~I~~~~l  376 (539)
                      +......+...+..+....+.+++++
T Consensus       179 ~~~~~~l~~~~~~~~~~v~l~~~~~~  204 (342)
T 3qj4_A          179 ECQRQQLEAVSYSSRYALGLFYEAGT  204 (342)
T ss_dssp             HHHHHHHHTCCBCCEEEEEEECSSCC
T ss_pred             HHHHHHHhcCCccccEEEEEEECCCC
Confidence            54443334556777887788888763

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.33  E-value=3.2e-12  Score=141.82  Aligned_cols=105  Identities=9%  Similarity=-0.028  Sum_probs=70.0

Q ss_pred             EEeecCCcChHHHHHHHHHHHCCcEEEeCCcce--EEEEecCCC-----cEEEE-EeCCCc--EEEcCEEEEC-CCCCC-
Q 009226          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI--SLLTDQNSG-----SYKGV-RLASGQ--DILSHKLVLD-PSFTV-  338 (539)
Q Consensus       271 ~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~--~I~~~~~~g-----~~~gV-~l~~G~--~i~Ad~VI~~-p~~~~-  338 (539)
                      +.++.||++.|+++|.+.+.. |+.|+|+++|+  +|..+. ++     ..+.| ...+|+  ++.||+||++ |...+ 
T Consensus       339 ~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~-~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~  416 (721)
T 3ayj_A          339 YTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANAC-HSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT  416 (721)
T ss_dssp             ECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEE-ECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred             eeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECC-CCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence            668999999999999886532 78899999999  998763 33     13456 446777  7899999984 32221 


Q ss_pred             -----CCCC-------c---------cc---chh-h-h-------hhhhhcccCCCcceEEEEEEEe-----cCCCC
Q 009226          339 -----PGSL-------A---------SS---HQQ-L-Q-------ESFQAFSLSDNKGKVARGICIT-----RSSLK  377 (539)
Q Consensus       339 -----~~l~-------~---------~~---~~~-l-~-------~~~~~l~~~~~~~~vsr~i~I~-----~~~l~  377 (539)
                           ..+.       .         ++   .++ | |       ..+....++..++..+|..+.+     ++||=
T Consensus       417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW  493 (721)
T 3ayj_A          417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWV  493 (721)
T ss_dssp             HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTS
T ss_pred             hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcc
Confidence                 0110       0         00   122 3 4       4444444566788889998888     88863

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.11  E-value=2.4e-10  Score=116.92  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             EEeecCC---cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC
Q 009226          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG---~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~~  333 (539)
                      ...|..|   ...+.++|.+.++..|++++++++|++|..+  ++..+.|++.+|  ++++||.||+.
T Consensus       139 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~a~~VV~A  204 (369)
T 3dme_A          139 LVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVR--PEGGFELDFGGAEPMTLSCRVLINA  204 (369)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSSEEEEECTTSCEEEEEEEEEEC
T ss_pred             eECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCceEEEEECCCceeEEEeCEEEEC
Confidence            4455555   2578899999999999999999999999876  444356888887  48999999964

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.11  E-value=9.1e-10  Score=116.17  Aligned_cols=61  Identities=21%  Similarity=0.202  Sum_probs=52.0

Q ss_pred             EEeecC-C---cChHHHHHHHHHHHCCcEEEeCC---cceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIY-G---QGELPQAFCRRAAVKGCLYVLRM---PVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~g-G---~geL~qal~r~~a~~Gg~i~L~~---~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +..|.. |   ...+.++|.+.++..|++|++++   +|++|..+  ++++++|++.+|++++||+||+.
T Consensus       149 ~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~~G~~i~Ad~VV~A  216 (438)
T 3dje_A          149 YFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTADGKIWRAERTFLC  216 (438)
T ss_dssp             EEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEETTTEEEECSEEEEC
T ss_pred             EEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEECCCCEEECCEEEEC
Confidence            456666 5   35788999999999999999999   99999887  77888899999989999999963

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.00  E-value=2.1e-10  Score=110.19  Aligned_cols=45  Identities=27%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchh
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~   67 (539)
                      +||+|||||++||+||..|+++|++|+||||++.+||++.+...+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~   47 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSD   47 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEET
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccC
Confidence            899999999999999999999999999999999999999876543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.99  E-value=3e-09  Score=118.83  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ..+|.+|.   ..+.++|.+.++..|++|+++++|++|..+  +++ ++|++.+|++++||.||+.
T Consensus       406 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~i~Ad~VVlA  468 (676)
T 3ps9_A          406 ITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK--DDC-WLLNFAGDQQATHSVVVLA  468 (676)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             EEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe--CCe-EEEEECCCCEEECCEEEEC
Confidence            55676663   588899999999999999999999999887  555 5888888889999999963

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.98  E-value=2.5e-09  Score=110.06  Aligned_cols=59  Identities=17%  Similarity=0.129  Sum_probs=48.6

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +++|.+|.   ..+.++|.+.++..|++|+++++|++|..+  +++ ++|++.+| +++||+||+.
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~~g-~i~a~~VV~A  204 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCDAG-SYRAAVLVNA  204 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE--TTE-EEEECSSE-EEEESEEEEC
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeCCC-EEEcCEEEEC
Confidence            45666663   588899999999999999999999999887  555 67887666 8999999964

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.95  E-value=1.4e-08  Score=109.54  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .++||||||+|++||+||+.|+++|.+|+||||.+..||...
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            469999999999999999999999999999999999998753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.91  E-value=1.1e-08  Score=108.44  Aligned_cols=60  Identities=20%  Similarity=0.327  Sum_probs=51.2

Q ss_pred             EEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       271 ~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+|..+ ...+.++|.+.++..|++|+++++|++|..+  ++++++|++.+|++++||.||+
T Consensus       125 ~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          125 RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEECCCCEEECCEEEE
Confidence            3577554 4688999999999999999999999999876  6777889988888899999985

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.90  E-value=9.6e-09  Score=114.97  Aligned_cols=60  Identities=17%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc-EEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~Ad~VI~~  333 (539)
                      ..+|.+|.   ..+.++|.+.++..|++|+++++|++|..+  +++ ++|++.+|+ +++||.||+.
T Consensus       401 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~~i~Ad~VVlA  464 (689)
T 3pvc_A          401 IHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI--DSQ-WQLTFGQSQAAKHHATVILA  464 (689)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC--SSS-EEEEEC-CCCCEEESEEEEC
T ss_pred             EEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe--CCe-EEEEeCCCcEEEECCEEEEC
Confidence            55676664   588999999999999999999999999886  455 578888887 8999999963

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.88  E-value=4.1e-08  Score=101.90  Aligned_cols=60  Identities=25%  Similarity=0.346  Sum_probs=50.0

Q ss_pred             EEeecCCcC---hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~g---eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ..+|..|..   .+.++|.+.++..|++++++++|++|..+  ++++++|++.+| +++||.||..
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  225 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTTRG-TIHAGKVALA  225 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTC-CEEEEEEEEC
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeCCc-eEECCEEEEC
Confidence            556777754   78899999999999999999999999876  667788888777 7999999964

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.88  E-value=6.4e-09  Score=109.39  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       271 ~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+|.....++.++|.+.++..|++++++++|++|..+  ++. +.|++.+| +++||.||+
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~VIl  181 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT--ASG-FRVTTSAG-TVDAASLVV  181 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTE-EEEESEEEE
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCc-EEEeeEEEE
Confidence            35776566799999999999999999999999999876  443 67887777 899999995

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.86  E-value=8.7e-08  Score=104.83  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=47.7

Q ss_pred             EeecCC---cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009226          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (539)
Q Consensus       272 lyp~gG---~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~  332 (539)
                      .+|..|   ..++.++|.+.++..|++|+++++|++|..+. ++++++|++.  +|+  +++||.||+
T Consensus       245 ~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~i~a~~VVl  311 (571)
T 1y0p_A          245 HRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKADAVIL  311 (571)
T ss_dssp             EESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC-CCeEEEEEEEeCCCcEEEEECCeEEE
Confidence            455543   24788999999999999999999999998861 3788888765  676  689999885

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.85  E-value=5.5e-08  Score=106.30  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             EeecCC---cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 009226          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (539)
Q Consensus       272 lyp~gG---~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~-g~~~gV~l~--~G~--~i~Ad~VI~  332 (539)
                      .+|..|   ...+.++|.+.++..|++|+++++|++|..+  + +++++|++.  +|+  +++||.||+
T Consensus       240 ~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A~~VVl  306 (566)
T 1qo8_A          240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGAKSVVL  306 (566)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEcCEEEE
Confidence            355554   3478899999999999999999999999876  5 888888764  676  689998885

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.85  E-value=4.3e-08  Score=101.13  Aligned_cols=60  Identities=25%  Similarity=0.244  Sum_probs=48.7

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.|..|.   ..+.++|.+.++..|++++.+++|++|..+  ++++.+|++.+| +++||.||..
T Consensus       138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~~g-~i~a~~VV~A  200 (382)
T 1y56_B          138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTNKG-IIKTGIVVNA  200 (382)
T ss_dssp             EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTE-EEECSEEEEC
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE--CCEEEEEEECCc-EEECCEEEEC
Confidence            44565553   478889999999999999999999999876  667777887776 8999999964

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.78  E-value=2.1e-08  Score=108.78  Aligned_cols=53  Identities=23%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ..+.++|.+.+...|++|+++++|++|..+  ++++++|++.+|+++.||.||+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~~G~~i~Ad~VVlA  272 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME--DGQITGVTLSNGEEIKSRHVVLA  272 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEETTSCEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            467788888888899999999999999876  67788899999999999999964

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.73  E-value=9.8e-08  Score=109.04  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +.+|..|.   ..+.++|.+.++..|++|+++++|++|..+  ++++++|++.+| +++||+||..
T Consensus       140 ~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~~G-~i~Ad~VV~A  202 (830)
T 1pj5_A          140 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  202 (830)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             EEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe--CCEEEEEEECCc-EEECCEEEEC
Confidence            55666664   378999999999999999999999999886  677778887666 7999999964

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.72  E-value=4e-07  Score=99.59  Aligned_cols=58  Identities=24%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             eecCC---cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 009226          273 YPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (539)
Q Consensus       273 yp~gG---~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~-g~~~gV~l~--~G~--~i~Ad~VI~  332 (539)
                      ++..|   ..++.++|.+.++..|++|+++++|++|..+  + +++++|++.  +|+  +++||.||+
T Consensus       246 ~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A~~VVl  311 (572)
T 1d4d_A          246 RPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKADAVVI  311 (572)
T ss_dssp             ESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEcCEEEE
Confidence            45444   2478899999999999999999999999876  5 788888765  675  689999995

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.69  E-value=8.1e-09  Score=106.38  Aligned_cols=41  Identities=27%  Similarity=0.412  Sum_probs=38.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      |++|||||||||++||++|..|+++|++|+|+||++.+|..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~   42 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP   42 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC
Confidence            67899999999999999999999999999999999888764

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.49  E-value=6.7e-08  Score=97.92  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar--~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ++||+|||+|++||+||.+|++  .|++|+|+|+++++||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            5899999999999999999974  69999999999999997754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.45  E-value=9.3e-08  Score=95.68  Aligned_cols=41  Identities=22%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .|++|||||||+|.+|++||.+|+|+|++|+++|++. +||.
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~   43 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNR   43 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCe
Confidence            4788999999999999999999999999999999975 5554

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.42  E-value=1.3e-07  Score=95.42  Aligned_cols=57  Identities=9%  Similarity=0.056  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC----CCCCCCcccc
Q 009226            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN----PFYGSHFSSL   64 (539)
Q Consensus         8 ~~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~----~~~GG~~~s~   64 (539)
                      ..++.|+-++..+..+||+|||+|++|+++|..|++.|++|+++|++    ..+||.+...
T Consensus         8 ~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A            8 HHHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             -------------CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             cccccCCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            34444444445556799999999999999999999999999999994    5899987753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.37  E-value=2.2e-07  Score=93.12  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +|||||||+|.+|++||..|+|.|++|+++|++ .+||.+.
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            699999999999999999999999999999985 6787654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.35  E-value=2.8e-07  Score=94.83  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=47.8

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +.+|..|.   .++.++|.+.++..|++++++++|++|..+  ++++ +|++.+| +++||.||..
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~-~v~~~~g-~~~a~~vV~A  214 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEAL-FIKTPSG-DVWANHVVVA  214 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSE-EEEETTE-EEEEEEEEEC
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE--CCEE-EEEcCCc-eEEcCEEEEC
Confidence            55666664   478899999999999999999999999865  5554 7877666 8999999964

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.32  E-value=3.6e-06  Score=88.03  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=49.0

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~  336 (539)
                      ..++.+.+.+.++..|.++++++.|++|..+  ++++.+|++++|+++.||.||+....
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~dG~~i~aD~Vv~a~G~  249 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQDGSVIPADIVIVGIGI  249 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEESSSCEEECSEEEECSCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECCCC
Confidence            4578888888899999999999999999765  67778899999999999999976443

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.31  E-value=3.3e-07  Score=92.88  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |+++||+|||+|++|+++|..|++.|++|+++|+++.+||.|..
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            45689999999999999999999999999999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.30  E-value=8.9e-06  Score=84.74  Aligned_cols=57  Identities=16%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~  336 (539)
                      ..++.+.+.+.++..|.++++++.|++|..+  ++++.+|++++|+++.||.||+....
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            4578888889999999999999999999876  67778899999999999999975443

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.27  E-value=3.1e-07  Score=95.99  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      |.++||||||+|++|+++|..|++.|.+|+|+|+++.+|+.+.
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~   44 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcE
Confidence            4579999999999999999999999999999999999887653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.27  E-value=4.9e-07  Score=94.21  Aligned_cols=46  Identities=17%  Similarity=0.052  Sum_probs=34.8

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      +-++-.++.+||||||||++||++|..|++.|.+|+|+|+++.++.
T Consensus        15 ~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~   60 (407)
T 3rp8_A           15 GENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP   60 (407)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC--
T ss_pred             CCcccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            3444455679999999999999999999999999999999987653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.27  E-value=3.6e-07  Score=97.79  Aligned_cols=53  Identities=21%  Similarity=0.275  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (539)
                      .++.+.+.+.++..|.+++++++|++|..+  +++ +.|++.+|+++.||.||+..
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vi~A~  284 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST--ENC-YNVVLTNGQTICADRVMLAT  284 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC--SSS-EEEEETTSCEEEESEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee--CCE-EEEEECCCcEEEcCEEEEee
Confidence            367888888888999999999999999765  444 47888899999999999643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.26  E-value=5.7e-07  Score=93.27  Aligned_cols=59  Identities=22%  Similarity=0.214  Sum_probs=45.3

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.|.+|.   ..+.++|.+.+...|++++++++|++|..+  ++. +.|++.+| +++||.||..
T Consensus       142 ~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~v~t~~g-~i~a~~VV~A  203 (397)
T 2oln_A          142 FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD--ADG-VSVTTDRG-TYRAGKVVLA  203 (397)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEESSC-EEEEEEEEEC
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc--CCe-EEEEECCC-EEEcCEEEEc
Confidence            44565553   467888999888999999999999999876  444 45766544 7999999853

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.25  E-value=4e-07  Score=97.56  Aligned_cols=49  Identities=31%  Similarity=0.386  Sum_probs=39.1

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .|+..+ .++||+|||||.+|++||..|++.|++|+++|+++.+||.|..
T Consensus        18 ~~~~~m-~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           18 LYFQSM-MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             ---------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             cchhhc-ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            344444 4599999999999999999999999999999999999997654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.25  E-value=5.3e-07  Score=90.07  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|||||||+|.+|++||..|+|.|++|+++|++..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            359999999999999999999999999999999764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.23  E-value=5.4e-07  Score=92.16  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ++..+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            456799999999999999999999999999999999999998753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.22  E-value=6.9e-07  Score=88.71  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG~   60 (539)
                      .++||||||+|++|+.+|..|++. |.+|+|+|+++.+||.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~   78 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG   78 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence            468999999999999999999997 9999999999999874

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.21  E-value=4.9e-07  Score=96.25  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=40.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||+|||||.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            3699999999999999999999999999999999999998764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.21  E-value=5.9e-07  Score=90.65  Aligned_cols=44  Identities=20%  Similarity=0.344  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +..+||+|||+|++|+++|..|++.|++|+++|+++..||.+..
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            35689999999999999999999999999999999999997753

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.21  E-value=8.8e-07  Score=92.48  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~~GG~~~s   63 (539)
                      |..+||||||||++||++|..|++.|.+ |+|+|+++.+++....
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g   46 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVG   46 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeE
Confidence            4568999999999999999999999999 9999999887654433

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.21  E-value=7.5e-07  Score=97.17  Aligned_cols=61  Identities=26%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             EEeecCCc--ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCC---C--cEEEcCEEEEC
Q 009226          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---G--QDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~--geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~---G--~~i~Ad~VI~~  333 (539)
                      +.|+.+-.  ..+..++.+.++..|++++++++|++|..+  ++++++|++.+   |  .+++||.||..
T Consensus       160 ~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~~VV~A  227 (561)
T 3da1_A          160 GIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAKKVVNA  227 (561)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEEC
T ss_pred             EEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECCEEEEC
Confidence            55665432  578899999999999999999999999987  77788888753   4  46899999853

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.19  E-value=1.2e-06  Score=97.85  Aligned_cols=60  Identities=15%  Similarity=0.191  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226            3 GNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |.|.+..|+.+..++ ....+||||||||++|+.||..|++.|++|+++|+++++||.+..
T Consensus       373 g~e~~~~~~~~~~~~-~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          373 GEEWRRGWHPERIRA-KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             TTTTTTCCCSSCCCC-CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             CcccccccCccccCc-ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            445444444333332 345689999999999999999999999999999999999998664

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.19  E-value=9.2e-07  Score=90.63  Aligned_cols=59  Identities=19%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.|..|.   ..+.++|.+.+...|++++.+++|++|..+  ++. +.|++.+| +++||.||..
T Consensus       138 ~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~g-~~~a~~vV~a  199 (372)
T 2uzz_A          138 LFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD--DDG-VTIETADG-EYQAKKAIVC  199 (372)
T ss_dssp             EEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSS-EEEEESSC-EEEEEEEEEC
T ss_pred             EEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc--CCE-EEEEECCC-eEEcCEEEEc
Confidence            44555553   478899999999999999999999999875  444 56777666 5999999853

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.19  E-value=1.7e-06  Score=87.39  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~   61 (539)
                      ++||+|||+|++|+++|..|++.  |++|+++|+++..||..
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            46999999999999999999999  99999999999998743

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.18  E-value=7.8e-07  Score=96.76  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=41.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccch
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSI   66 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~   66 (539)
                      .+..+||||||||++|+.+|..|++.|++|+++|+++.+||.|.....
T Consensus        18 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~y   65 (549)
T 4ap3_A           18 GTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY   65 (549)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC
T ss_pred             CCCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCC
Confidence            345699999999999999999999999999999999999998764433

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.17  E-value=1.1e-06  Score=88.19  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+||+|||+|++|+++|..|++.|++|+++|+ ..+||.+..
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            468999999999999999999999999999999 568887653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.17  E-value=1.4e-06  Score=92.03  Aligned_cols=43  Identities=21%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~~~GG~~~s   63 (539)
                      ..+||+|||||++||++|.+|++.|.  +|+++|+++.+||.|..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            46899999999999999999999999  99999999999997754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.17  E-value=1.5e-06  Score=88.90  Aligned_cols=39  Identities=18%  Similarity=0.146  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .++||||||+|++|+++|+.|+++|++|+|+|++...+|
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            578999999999999999999999999999999874443

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.15  E-value=8.7e-07  Score=88.94  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~   48 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA   48 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh
Confidence            589999999999999999999999999999999999998853

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.15  E-value=1.6e-06  Score=90.10  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      +..+||+|||||++||++|..|++.|.+|+|+|+++.++++
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            35689999999999999999999999999999999877553

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.14  E-value=1.4e-06  Score=87.06  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+||+|||+|++|+++|..|++.|++|+++|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999999  8988765

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.14  E-value=1.6e-06  Score=89.37  Aligned_cols=41  Identities=15%  Similarity=0.066  Sum_probs=36.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      |..+||||||||++||++|..|++.|.+|+|+|+++..++.
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~   49 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAF   49 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCC
Confidence            45689999999999999999999999999999999988754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.13  E-value=1.6e-06  Score=93.21  Aligned_cols=52  Identities=19%  Similarity=0.097  Sum_probs=43.3

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~~  333 (539)
                      ..+.+++.+.++..|++++.+++|++|..+  + ++++|++   .+|+  +++||.||..
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~~VV~A  205 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQARGLVNA  205 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEESCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECCEEEEC
Confidence            478899999999999999999999999876  4 5678876   3676  7899999953

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.13  E-value=1.7e-06  Score=89.11  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ..+.++|.+.++..|++++.+++|++|..+  ++. +.|++.+| +++||.||..
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A  200 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec--CCe-EEEEeCCC-EEEeCEEEEe
Confidence            588899999999999999999999999875  444 46776555 7999999964

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.13  E-value=1.5e-06  Score=90.57  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~--~i~Ad~VI~  332 (539)
                      ..+.+.|.+.++..|++++.+++|++|..+. ++..+.|++.+|+  +++||.||.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFG-TDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCCEEEEEcCEEEE
Confidence            3556677777777899999999999998762 3444567778888  699999995

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.13  E-value=1.5e-06  Score=88.32  Aligned_cols=40  Identities=13%  Similarity=0.133  Sum_probs=37.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~   61 (539)
                      ++||||||+|++||++|++|++.  |++|+++|+++.+||..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            58999999999999999999997  99999999999998743

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.13  E-value=1.6e-06  Score=94.19  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+..+||||||||++|+.+|..|++.|++|+++|+++.+||.|..
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~   57 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   57 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            345799999999999999999999999999999999999998753

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.12  E-value=1.7e-06  Score=83.23  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      |.++||||||+|++|+.+|..|++.|.+|+++|++.
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            356999999999999999999999999999999984

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.12  E-value=1.6e-06  Score=92.45  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=37.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .+|||+|||+|.+|++||..|++.|++|+++|+++..||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999998655554

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.11  E-value=2.2e-06  Score=90.98  Aligned_cols=45  Identities=20%  Similarity=0.176  Sum_probs=40.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ...+.+||+|||+|++||++|..|++.|++|+++|+++++||.+.
T Consensus       118 ~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          118 SRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            334678999999999999999999999999999999999999754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.10  E-value=2.3e-06  Score=93.78  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CC--cEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SG--QDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G--~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.++..|++++.+++|++|..+  ++..++|++. +|  ++++||.||.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~AdlVV~  182 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESDFVID  182 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcCEEEE
Confidence            467777888888899999999999999875  5566788876 67  5799999995

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.10  E-value=1.3e-06  Score=92.92  Aligned_cols=53  Identities=13%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEE-eCCCcEEEcCEEEECC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVLDP  334 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~-l~~G~~i~Ad~VI~~p  334 (539)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|+ +.+|+ +.||.||+..
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~~g~-i~aD~Vv~a~  264 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSAD--ADGRRVATTMKHGE-IVADQVMLAL  264 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSCEEEEESSSCE-EEESEEEECS
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCCEEEEEEcCCCe-EEeCEEEEee
Confidence            477888888899999999999999999765  33335788 88888 9999999643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.10  E-value=1.7e-06  Score=90.24  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcce---------EEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVI---------SLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~---------~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .+.|..|.   ..+.++|.+.+...|++++.+++|+         +|..+  ++++ +|++.+| +++||.||..
T Consensus       161 ~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~--~~~v-~v~~~~g-~i~a~~VV~A  231 (405)
T 3c4n_A          161 RVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT--NTHQ-IVVHETR-QIRAGVIIVA  231 (405)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCE-EEEEEEEEEC
T ss_pred             EEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee--CCeE-EEEECCc-EEECCEEEEC
Confidence            34555553   4688999999999999999999999         88665  4554 7776555 8999999954

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.10  E-value=2.2e-06  Score=92.69  Aligned_cols=45  Identities=33%  Similarity=0.468  Sum_probs=41.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ++..+||||||||.+|+++|..|++.|++|+++|+++.+||.+..
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   84 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH   84 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccc
Confidence            456799999999999999999999999999999999989998653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.10  E-value=1.8e-06  Score=86.88  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            4689999999999999999999999999999999 78887654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.09  E-value=1.6e-06  Score=91.59  Aligned_cols=60  Identities=18%  Similarity=0.298  Sum_probs=47.9

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEE---------------ecCCCcEEEEEeCCCcEE--EcCEE
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLT---------------DQNSGSYKGVRLASGQDI--LSHKL  330 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~---------------~~~~g~~~gV~l~~G~~i--~Ad~V  330 (539)
                      +.+|..|.   ..+.++|.+.++..|++++.+++|++|..               +  ++++++|++.+| ++  +||.|
T Consensus       170 ~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~--~~~v~~V~t~~g-~i~~~Ad~V  246 (448)
T 3axb_A          170 VLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ--EARASAAVLSDG-TRVEVGEKL  246 (448)
T ss_dssp             EEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS--CEEEEEEEETTS-CEEEEEEEE
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC--CCceEEEEeCCC-EEeecCCEE
Confidence            44555442   37889999999999999999999999987               3  556678888777 68  99999


Q ss_pred             EEC
Q 009226          331 VLD  333 (539)
Q Consensus       331 I~~  333 (539)
                      |..
T Consensus       247 V~A  249 (448)
T 3axb_A          247 VVA  249 (448)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            964

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.09  E-value=1.3e-06  Score=89.20  Aligned_cols=43  Identities=19%  Similarity=0.305  Sum_probs=39.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~~s   63 (539)
                      |.++||+|||||++|+++|..|++.|+ +|+++|+++ +||.+..
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~   45 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKH   45 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHT
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcccc
Confidence            456899999999999999999999999 999999999 9986654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.08  E-value=1.7e-06  Score=86.07  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEE-eccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~Vlv-lE~~~~~GG~~~s   63 (539)
                      ..+||+|||+|++|++||..|++.|++|++ +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            468999999999999999999999999999 999 788998754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.08  E-value=2.9e-06  Score=88.08  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      +..+||+|||||++||++|..|++.|++|+|+|+++..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            45689999999999999999999999999999999874

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.06  E-value=2.2e-06  Score=86.73  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=39.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus        10 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A           10 AHHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             CCCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             ccCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            3456799999999999999999999999999999975 78887643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.06  E-value=2.4e-06  Score=90.82  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||||||+|.+|+++|..|++.|++|+++|+++.+||.+..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            4689999999999999999999999999999999999998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.04  E-value=1.3e-06  Score=93.11  Aligned_cols=43  Identities=19%  Similarity=0.270  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||||||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            4699999999999999999999999999999999999997644

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.04  E-value=2.7e-06  Score=91.88  Aligned_cols=43  Identities=30%  Similarity=0.366  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--------CCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~--------~~GG~~~s   63 (539)
                      .+|||+|||+|.+|+.||..|++.|++|+++|+++        .+||.|..
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   81 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVN   81 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCC
Confidence            46999999999999999999999999999999975        78997654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.04  E-value=2.7e-06  Score=92.44  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchh
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~   67 (539)
                      +..+||||||||++|+.+|..|++.|++|+++|+++.+||.|.....+
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yP   54 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYP   54 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCC
Confidence            456899999999999999999999999999999999999987644433

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.03  E-value=1.7e-06  Score=92.23  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +..+||+|||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            35799999999999999999999999999999976 78987644

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.03  E-value=2.2e-06  Score=93.97  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .++.++|.+.+...|++|++++.|++|..++ +++++||..   .+|+  +++|+.||+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~-~g~v~Gv~~~~~~~g~~~~i~A~~VVl  200 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKARATVL  200 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCeEEEEEcCEEEE
Confidence            4788999999988999999999999998742 577888875   4676  589999885

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.03  E-value=2e-06  Score=91.70  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +.++||||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLN   47 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccc
Confidence            35699999999999999999999999999999999999998653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.03  E-value=2.2e-06  Score=91.22  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=39.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ++||||||||.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   43 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLN   43 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCC
Confidence            489999999999999999999999999999999999998753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.03  E-value=2.7e-06  Score=90.99  Aligned_cols=43  Identities=30%  Similarity=0.314  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEecc--------CCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP--------NPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~--------~~~~GG~~~s   63 (539)
                      .+|||||||+|.+|++||..|++.|++|+++|+        +..+||.|..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   55 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN   55 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecc
Confidence            569999999999999999999999999999998        6689997754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.03  E-value=2.2e-06  Score=92.93  Aligned_cols=47  Identities=17%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHh-hCCCeEEEeccCCCCCCCccccch
Q 009226           20 PTAFDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPFYGSHFSSLSI   66 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La-r~G~~VlvlE~~~~~GG~~~s~~~   66 (539)
                      +..+||||||||++|+.+|..|+ +.|++|+++|+++.+||.|.....
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~y   53 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRY   53 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCC
Confidence            34689999999999999999999 999999999999999998765433

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.02  E-value=3.7e-06  Score=91.82  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      .++||||||||++||++|+.|++.|.+|+|||+++..+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            46899999999999999999999999999999998765

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.02  E-value=3.4e-06  Score=93.04  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ..+||||||+|++|+++|..|++.|++|+++|+.+..||.+.
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            469999999999999999999999999999999999998553

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.01  E-value=2.4e-06  Score=90.53  Aligned_cols=42  Identities=26%  Similarity=0.333  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +|||||||+|.+|++||..|++.|++|+++|+++.+||.+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   42 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLR   42 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccce
Confidence            389999999999999999999999999999999999998654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.01  E-value=1.9e-06  Score=92.07  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||||||+|.+|+++|..|++.|++|+++|+++.+||.+..
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   47 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceee
Confidence            4699999999999999999999999999999999999987643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.00  E-value=4.7e-06  Score=89.52  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=36.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .+.++||+|||||++||++|+.|++.|.+|+|+||++..+.
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            34579999999999999999999999999999999987654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.00  E-value=4e-06  Score=86.93  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHC-CcEEEeCCcceEEEEecCCCcEE-EEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYK-GVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~-Gg~i~L~~~V~~I~~~~~~g~~~-gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.+... |++++++++|++|..+  +++++ .|++.+|++++||.||.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRD--ERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEEC--TTSCEEEEEETTSCEEEEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc--CCceEEEEEECCCCEEECCEEEE
Confidence            35666777777777 8999999999999876  44443 67888899999999995

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.00  E-value=3.3e-06  Score=92.52  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhC------CCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~------G~~VlvlE~~~~~GG~~   61 (539)
                      ++||||||||++||++|+.|++.      |.+|+|+||++.+|+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~   80 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   80 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcc
Confidence            58999999999999999999999      99999999999988753

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.99  E-value=4.9e-06  Score=89.35  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ...+||+|||||++||++|..|++.|++|+|+|+++.+|+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            35689999999999999999999999999999999988754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.99  E-value=3.9e-06  Score=90.35  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe--CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l--~~G~--~i~Ad~VI~  332 (539)
                      ..+.+.|.+.+...|++++++++|++|..+  ++++.+|++  .+|+  +++||.||.
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence            367777888888899999999999999887  677666655  4574  799999994

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.98  E-value=4.8e-06  Score=90.98  Aligned_cols=61  Identities=18%  Similarity=0.299  Sum_probs=47.3

Q ss_pred             EEeecCCc--ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEC
Q 009226          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~--geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~~  333 (539)
                      +.|+.+..  ..+..++.+.++..|++|+.+++|++|..+  ++++++|++.   +|+  +++||.||..
T Consensus       178 ~~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~~VV~A  245 (571)
T 2rgh_A          178 GVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAKLVINT  245 (571)
T ss_dssp             EEECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBSCEEEC
T ss_pred             EEecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcCEEEEC
Confidence            55665332  367888888889999999999999999887  6777788753   344  6999999953

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.98  E-value=2.2e-06  Score=90.71  Aligned_cols=51  Identities=18%  Similarity=0.156  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~  332 (539)
                      .+.+.|.+.+...|+++++++.|+++..+  ++++++|++.   +|+  +++||.||.
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad~VV~  156 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSKVVVE  156 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcCEEEE
Confidence            56677778788899999999999999876  6777667664   676  799999994

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.98  E-value=2.6e-06  Score=90.53  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +++||||||||++|+++|..|++.|++|+++|++ .+||.+..
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~   43 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLN   43 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccc
Confidence            4689999999999999999999999999999998 78887643

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.98  E-value=4e-06  Score=90.98  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      +.++||||||+|++||+||+.|++ |.+|+||||++..||..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            346899999999999999999999 99999999999877653

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.97  E-value=4.4e-06  Score=90.81  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||+|||||++||++|+.|++.|.+|+|+||++..++..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~   65 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHP   65 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC
Confidence            36899999999999999999999999999999998876543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.97  E-value=2.9e-06  Score=85.40  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEecc----CCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~----~~~~GG~~~s   63 (539)
                      +..+||+|||+|++|+++|..|++.|++|+++|+    ....||.+..
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            4568999999999999999999999999999999    6778887543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.97  E-value=3.7e-06  Score=89.41  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=39.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +..+||||||+|.+|+++|..|++.|++|+++|++ .+||.|..
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~   44 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVN   44 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccC
Confidence            35689999999999999999999999999999998 78987653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.97  E-value=3e-06  Score=84.80  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      |..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            45689999999999999999999999999999974 7888654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.97  E-value=5.2e-06  Score=82.71  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~~s   63 (539)
                      +||+|||+|++|+++|..|++.|+ +|+++|++ .+||.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            799999999999999999999999 99999995 68887653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.97  E-value=6e-06  Score=89.36  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=36.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .++||||||||++||++|+.|++.|.+|+|+||++..+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~   42 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSP   42 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            468999999999999999999999999999999987653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.96  E-value=4.7e-06  Score=89.04  Aligned_cols=55  Identities=7%  Similarity=0.135  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc-----EEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~-----~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..+. ++. +.|++.+|+     ++.+|.||+...
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~-~~v~~~~~~~~~~~~~~~D~vi~a~G  286 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQD-DGK-LLVKYKNVETGEESEDVYDTVLWAIG  286 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECT-TSC-EEEEEEETTTCCEEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCc-EEEEEecCCCCceeEEEcCEEEECcc
Confidence            4677888888899999999999999997652 333 356665554     789999997543

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.96  E-value=3.6e-06  Score=93.32  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=44.0

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      ..|.++|.+.+...|++|+.++.|.+|..+  +|++.||..   .+|+  .++|+.||+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  214 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence            378899999988899999999999999887  788888765   4676  489999985

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.95  E-value=3.7e-06  Score=89.39  Aligned_cols=52  Identities=13%  Similarity=0.089  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc-EEEcCEEEECC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVLDP  334 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~Ad~VI~~p  334 (539)
                      ++.+.+.+.++..|.++++++.|++|..+  ++. +.|++++|+ ++.+|.||+..
T Consensus       208 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~G~~~i~~D~vv~a~  260 (463)
T 2r9z_A          208 LLSATLAENMHAQGIETHLEFAVAALERD--AQG-TTLVAQDGTRLEGFDSVIWAV  260 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEE--TTE-EEEEETTCCEEEEESEEEECS
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCe-EEEEEeCCcEEEEcCEEEECC
Confidence            67788888888999999999999999765  333 578888999 89999999653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.95  E-value=3.9e-06  Score=89.99  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=37.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +|||||||+|.+|++||..|++.|++|+++|++. +||.|.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            5999999999999999999999999999999975 999764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.95  E-value=5.6e-06  Score=93.10  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ...+||+|||||.+|+.||..|++.|++|+++|+++++||.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            34689999999999999999999999999999999999998754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=3.4e-06  Score=90.10  Aligned_cols=55  Identities=4%  Similarity=-0.046  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC-cEEEcCEEEECC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVLDP  334 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G-~~i~Ad~VI~~p  334 (539)
                      .++.+.+.+.++..|.++++++.|++|..+. +++.+.|++++| +++.||.||+..
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~~v~~~~G~~~i~~D~vv~a~  281 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNV-ETDKLKIHMNDSKSIDDVDELIWTI  281 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEECS
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcC-CCcEEEEEECCCcEEEEcCEEEECC
Confidence            3677888888889999999999999997641 333457888889 789999999653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.95  E-value=4.8e-06  Score=91.26  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCCC
Q 009226           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGS   59 (539)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~-~~GG   59 (539)
                      ..+..+..|||||||||++|+.||.+|++.|.+|+++|++. .+|+
T Consensus        14 ~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           14 LVPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             ------CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             ccccccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            34445567999999999999999999999999999999985 4554

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.94  E-value=3.5e-06  Score=85.76  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G------~~VlvlE~~~~~GG   59 (539)
                      +||||||||++||++|+.|+++|      ++|+|||++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            49999999999999999999998      99999999875444

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.93  E-value=4.8e-06  Score=86.14  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ++||+|||||++||++|..|++.|.+|+|+|+++.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.93  E-value=6.1e-06  Score=91.47  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHC--CcEEEeCCcceEEEEecCCC---cEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVK--GCLYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~--Gg~i~L~~~V~~I~~~~~~g---~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .++.++|.+.+...  |.+|+.++.|.+|.++  ++   +++||..   .+|+  .++|+.||+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~--~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVL  227 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD--KNTPNRIAGAVGFNLRANEVHIFKANAMVV  227 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC--SSSTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe--CCccceEEEEEEEEcCCCcEEEEEeCEEEE
Confidence            47888888888777  9999999999999887  44   8888864   3565  589999985

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.93  E-value=3.8e-06  Score=88.97  Aligned_cols=53  Identities=8%  Similarity=0.073  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (539)
                      ++.+.+.+.++..|.++++++.|++|..+  ++..+.|++++|+++.||.||+..
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vv~a~  261 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN--TDGSLTLELEDGRSETVDCLIWAI  261 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC--TTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCcEEEEEECCCcEEEcCEEEECC
Confidence            67788888888999999999999999764  333356788899999999999653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.92  E-value=7.2e-06  Score=88.08  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .++||+|||||++||++|+.|++.|.+|+|+|+++..+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   49 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG   49 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999987653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.92  E-value=4.9e-06  Score=91.65  Aligned_cols=52  Identities=19%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .+|.++|.+.+...|.+|+.++.|.+|..+  +|++.||..   .+|+  .++|+.||+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  211 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAKNTVI  211 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478899999888899999999999999887  788888875   4676  689999885

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.92  E-value=6.9e-06  Score=84.82  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .+|+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999997643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.90  E-value=4.3e-06  Score=88.91  Aligned_cols=42  Identities=31%  Similarity=0.379  Sum_probs=38.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      |.++||||||+|.+|+.||..|++.|++|+++|+++ +||.|.
T Consensus         4 m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~   45 (464)
T 2eq6_A            4 MKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL   45 (464)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence            346999999999999999999999999999999998 898764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.90  E-value=7.2e-06  Score=87.21  Aligned_cols=42  Identities=12%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCe---EEEeccCCCCCCCcccc
Q 009226           23 FDLIVIGTGLPESVISAAASA---SGKS---VLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar---~G~~---VlvlE~~~~~GG~~~s~   64 (539)
                      +||+|||||++|++||..|++   .|.+   |+++|+++.+||.|...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~   50 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT   50 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecC
Confidence            699999999999999999999   9999   99999999999988753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.90  E-value=6.5e-06  Score=81.10  Aligned_cols=38  Identities=21%  Similarity=0.314  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      +||+|||+|++|+.+|..|++.|++|+++|+++..|+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~   40 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF   40 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc
Confidence            89999999999999999999999999999998765543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.89  E-value=5.6e-06  Score=88.68  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (539)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|++++|+++.||.||+..
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a~  284 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKN--ADGTRHVVFESGAEADYDVVMLAI  284 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEEC--TTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEECCCcEEEcCEEEEcc
Confidence            367888888889999999999999999765  333357888899899999999653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.88  E-value=1.2e-05  Score=89.54  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ..+||||||+|.+|+.||..|++.|++|+++|++++.||.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            468999999999999999999999999999999999999864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.87  E-value=8e-06  Score=84.32  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~G   58 (539)
                      .||||||||++||++|..|+++  |.+|+|+|+++..+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~   38 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQE   38 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCC
Confidence            4899999999999999999999  99999999998763

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=5.9e-06  Score=87.50  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ++||||||||.+|++||..|++.|++|+++|++ .+||.+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            589999999999999999999999999999998 8898764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.86  E-value=6.5e-06  Score=89.17  Aligned_cols=52  Identities=8%  Similarity=-0.004  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++++.+.+..+..|..+++++.|+++...  ++. +.|.+.+++++.+|.|++.
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~--~~~-~~v~~~~~~~~~~D~vLvA  314 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKM--DDK-ILVEFSDKTSELYDTVLYA  314 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEec--CCe-EEEEEcCCCeEEEEEEEEc
Confidence            478899999999999999999999999876  444 4677889999999999863

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.86  E-value=8.6e-06  Score=89.35  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          280 ELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       280 eL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      .+.++|.+.++. .|.++ ++..|+.|..+  ++++++|++.+|+++.||.||+
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e--~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIVE--NDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEES--SSBEEEEEETTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEec--CCEEEEEEECCCCEEECCEEEE
Confidence            566777777776 57787 68899999876  6777889888888899999885

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.85  E-value=5.6e-06  Score=87.85  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||||||+|.+|+.||..|++.|++|+++|+ +.+||.|..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~   45 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLN   45 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCC
Confidence            358999999999999999999999999999999 789998763

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.84  E-value=9.8e-06  Score=88.60  Aligned_cols=52  Identities=12%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ..+.++|.+.++. .|.++ ++..|+.|..+  ++++++|.+.+|+++.|+.||+.
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e--~g~V~GV~t~dG~~i~AdaVVLA  175 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVK--NNQVVGVRTNLGVEYKTKAVVVT  175 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEES--SSBEEEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEec--CCEEEEEEECCCcEEEeCEEEEc
Confidence            3567778777777 48888 68899999876  77888999999999999999853

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.83  E-value=6.1e-06  Score=88.50  Aligned_cols=55  Identities=9%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|++++|+++.||.||+...
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a~G  289 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLN--TDGSKHVTFESGKTLDVDVVMMAIG  289 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC--TTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCceEEEEECCCcEEEcCEEEECCC
Confidence            367888888889999999999999999765  3333578888999999999997543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.83  E-value=1.1e-05  Score=80.36  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +|||+|||+|++|+++|..|++.|++|+++|+  .+||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            48999999999999999999999999999986  5788765

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.83  E-value=8.2e-06  Score=87.47  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+||||||+|++|+++|..|++. ++|+++|+++++||.+..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            468999999999999999999999 999999999999998764

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.83  E-value=1.5e-05  Score=81.95  Aligned_cols=41  Identities=20%  Similarity=0.122  Sum_probs=36.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +||||||+|++|+.||.+|++.|++|+++|+++..+...+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h~   42 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHG   42 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSCC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcccc
Confidence            69999999999999999999999999999999866655443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.82  E-value=8.9e-06  Score=85.58  Aligned_cols=34  Identities=9%  Similarity=0.045  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3799999999999999999999999999999986

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.82  E-value=6.1e-06  Score=88.56  Aligned_cols=51  Identities=10%  Similarity=0.121  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.+.+.+.++..|.+++++++|++|..+  +++ +.|++.+|+++.||.||+.
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vv~a  274 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT--GAG-VLVTMTDGRTVEGSHALMT  274 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCE-EEEEECCCcEEEcCEEEEC
Confidence            67888888889999999999999999765  444 4677788999999999964

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.81  E-value=2.2e-05  Score=86.91  Aligned_cols=39  Identities=13%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~~GG   59 (539)
                      .++||+|||||++||++|+.|++ .|.+|+|+||++..+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~   70 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPME   70 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            46899999999999999999999 9999999999987653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.81  E-value=9.1e-06  Score=87.23  Aligned_cols=55  Identities=7%  Similarity=0.005  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcE-EEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..++ ++. +.|++++|++ +.+|.||+...
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~~D~vi~a~G  272 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIYCVG  272 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEECCC
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcC-Cce-EEEEECCCcEEEECCEEEECCC
Confidence            3678888888899999999999999997641 233 4677889988 99999997543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.81  E-value=1.6e-05  Score=86.14  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.+...|++++.+ .|++|..+. ++.+++|++.+|++++||.||.
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~g~~~~v~~~~g~~i~ad~vV~  216 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNN-RGYISNLLTKEGRTLEADLFID  216 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEETTSCEECCSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcC-CCcEEEEEECCCcEEEeCEEEE
Confidence            578888888888899999999 899998752 5566788888898999999994

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.80  E-value=1.3e-05  Score=87.06  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..+||+||||+|.+|+++|.+|+++|++|++||+....
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            35699999999999999999999999999999998753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.79  E-value=1.5e-05  Score=84.89  Aligned_cols=51  Identities=22%  Similarity=0.160  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI~  332 (539)
                      .++.++|.+.++..|.+++.++.| +|..+  ++++.+|.+. ++.++.||.||+
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~--~~~v~Gv~v~~~~g~~~a~~VVl  170 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK--DGKVTGFVTEKRGLVEDVDKLVL  170 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE--TTEEEEEEETTTEEECCCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe--CCEEEEEEEEeCCCeEEeeeEEE
Confidence            478888988888889999999999 99877  6777787653 334578999985

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.77  E-value=1.8e-05  Score=72.43  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +||+|||+|++|+.+|..|++.|++|+++|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999987

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.76  E-value=1.4e-05  Score=86.18  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~   56 (539)
                      +||+||||+|.+|+++|.+|++ .|++|||||+...
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            6999999999999999999998 6899999999644

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.76  E-value=1.2e-05  Score=88.26  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      .+|.++|.+.+...| .+++.++.|.+|..+  +++++||..   .+|+  +++|+.||+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  191 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478889988888888 999999999999887  677777753   5676  689999885

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.75  E-value=1.4e-05  Score=84.58  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-----CeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G-----~~VlvlE~~~~~GG~~   61 (539)
                      ..+||||||+|++|+++|..|++.|     .+|+++|+++.+|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            4689999999999999999999999     9999999999998544

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.74  E-value=1.7e-05  Score=86.53  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~   56 (539)
                      ..+||+||||+|.+|+++|.+|++.| .+|+|||+.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999998 69999999765

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.73  E-value=1.6e-05  Score=88.15  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHC-Cc-EEEeCCcceEEEEecCCC---cEEEEEe---CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVK-GC-LYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~-Gg-~i~L~~~V~~I~~~~~~g---~~~gV~l---~~G~--~i~Ad~VI~  332 (539)
                      ..+...+.+.+... |. +++.++.|.+|..+  ++   +++||..   .+|+  .++|+.||+
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~--~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  212 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD--NNDPNAVAGAVGFSVREPKFYVFKAKAVIL  212 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC--TTCTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc--CCccceeEEEEEEEecCCcEEEEEcCEEEE
Confidence            35677777777777 99 99999999999886  55   8888764   5666  589999995

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.68  E-value=2e-05  Score=91.32  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ..+||||||+|.+|+.||..|++.|++|+++|+++++||.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            468999999999999999999999999999999999999887

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.66  E-value=2.9e-05  Score=83.76  Aligned_cols=40  Identities=15%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ..+||+|||||++|++||.+|++.|++|+++|+  +.||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            469999999999999999999999999999996  5788765

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.66  E-value=3.3e-05  Score=83.84  Aligned_cols=52  Identities=25%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHHHHC-CcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~-Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.++.. |++++++ .|++|..++ ++.+++|++.+|+++.||.||.
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~-~g~~~~v~~~~G~~i~ad~vI~  246 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDA-NGNIESVRTATGRVFDADLFVD  246 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECT-TSCEEEEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcC-CCCEEEEEECCCCEEECCEEEE
Confidence            46888898888888 9999999 999998752 5667789888998999999995

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.66  E-value=1.9e-05  Score=83.82  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-C------CCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASA-S------GKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar-~------G~~VlvlE~~~~~GG~~~   62 (539)
                      |..+||+|||+|.+|+.+|..|++ .      |.+|+++|+++++||.++
T Consensus         1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            346899999999999999999999 7      999999999999998764

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.65  E-value=1.9e-05  Score=85.57  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .+||+||||+|.+|+++|.+|++ |.+|+|||+....++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            46999999999999999999999 999999999876543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.65  E-value=2.6e-05  Score=83.18  Aligned_cols=53  Identities=8%  Similarity=0.078  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..   ++++..|.+ +++++.||.||+...
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~D~vi~a~G  279 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG---NERVEAVET-DKGTYKADLVLVSVG  279 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE---SSBEEEEEE-TTEEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc---CCcEEEEEE-CCCEEEcCEEEECcC
Confidence            46778888888999999999999999964   345556765 456899999996543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.64  E-value=2.7e-05  Score=84.01  Aligned_cols=52  Identities=12%  Similarity=0.193  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.++. .|++++.+ .|++|..+. ++.+++|++.+|++++||.||.
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~-~g~~~~v~~~~g~~i~ad~vV~  227 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQ-HGDIEKLITKQNGEISGQLFID  227 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECT-TSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecC-CCcEEEEEECCCCEEEcCEEEE
Confidence            4678888888888 89999999 599998752 5566788888888899999994

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.62  E-value=3.3e-05  Score=81.54  Aligned_cols=42  Identities=10%  Similarity=0.097  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~   61 (539)
                      |+.+||||||+|++|+.+|..|++.  |++|+++|++++.|+..
T Consensus         1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~   44 (449)
T 3kd9_A            1 MSLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP   44 (449)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC
Confidence            3458999999999999999999998  88999999999887543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.62  E-value=2.2e-05  Score=84.34  Aligned_cols=52  Identities=21%  Similarity=0.230  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..+.+.|.+.+...|++++.+ .|++|..++ ++.+++|++.+|++++||.||.
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~~~~~~v~~~~g~~~~ad~vV~  224 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDE-RGWISGVHTKQHGEISGDLFVD  224 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcC-CCCEEEEEECCCCEEEcCEEEE
Confidence            477888888888899999999 999998752 5667789888898999999994

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.60  E-value=3.6e-05  Score=84.21  Aligned_cols=50  Identities=24%  Similarity=0.195  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+.++..|.++++++.|++|..+  ++   +|++++|+++.||.||+.
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~D~Vi~a  277 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA---VVRLKSGSVIQTDMLILA  277 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG--GT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC--CC---EEEECCCCEEEcCEEEEc
Confidence            477888888889999999999999999643  33   477789999999999964

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.60  E-value=2.9e-05  Score=82.50  Aligned_cols=55  Identities=11%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ..++.+.+.+.++..|.+++++++|++|..+  ++++ .|++++|+++.||.||+...
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g~~i~aD~Vv~a~G  255 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE--NGKV-ARVITDKRTLDADLVILAAG  255 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBE-EEEEESSCEEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc--CCeE-EEEEeCCCEEEcCEEEECCC
Confidence            4578888889899999999999999999764  5554 47778999999999997543

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.60  E-value=3.1e-05  Score=84.91  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ...+||+|||+|.+|++||..|++.|++|+++|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            45699999999999999999999999999999983

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.59  E-value=3.8e-05  Score=89.49  Aligned_cols=41  Identities=10%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~   61 (539)
                      +.+||+|||+|.+|++||..|++.|+ +|+++|+++++||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            46899999999999999999999999 799999999999975

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.58  E-value=4e-05  Score=83.65  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=34.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCC
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~   55 (539)
                      +...+||+||||||.+|+++|.+|+.. |.+|+|||+.+
T Consensus        15 ~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           15 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             cCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            555689999999999999999999975 89999999976

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.57  E-value=3.7e-05  Score=81.64  Aligned_cols=42  Identities=10%  Similarity=-0.034  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~~   62 (539)
                      ..+||+|||+|++|+.+|..|++.|  ++|+++|+++++||.++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            3579999999999999999999999  99999999999998763

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.57  E-value=4.7e-05  Score=84.62  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-----CCCeEEEeccCCCC--CCCccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASA-----SGKSVLHLDPNPFY--GSHFSSLS   65 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar-----~G~~VlvlE~~~~~--GG~~~s~~   65 (539)
                      .++||+|||||++||++|+.|++     .|.+|+|+|+++..  .|+...+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~   58 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ   58 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEC
Confidence            36899999999999999999999     99999999998764  45544443

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.52  E-value=5.8e-05  Score=81.04  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      +.+||+||||+|.+|+++|.+|++.|++|+++|+....+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            457999999999999999999999999999999988765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.48  E-value=6.1e-05  Score=79.62  Aligned_cols=53  Identities=6%  Similarity=0.120  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.+++++++|++|..+  ++++ .|++.+| ++.||.||+...
T Consensus       189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g-~i~aD~Vv~A~G  241 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQAVIFHFEETVLGIEET--ANGI-VLETSEQ-EISCDSGIFALN  241 (452)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETCCEEEEEEC--SSCE-EEEESSC-EEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEcc--CCeE-EEEECCC-EEEeCEEEECcC
Confidence            477888888889999999999999999765  5555 7877666 899999997543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.44  E-value=7.5e-05  Score=78.89  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ..++.+.+.+.++..|.+++++++|++|..+  ++++..|.+ +|+++.||.||+...
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~~v~~-~g~~i~~D~vv~a~G  244 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEV--DDEIITKTL-DGKEIKSDIAILCIG  244 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEE--TTEEEEEET-TSCEEEESEEEECCC
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC--CCeEEEEEe-CCCEEECCEEEECcC
Confidence            3578888888899999999999999999764  566656765 888999999997543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.44  E-value=6.2e-05  Score=81.92  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~~GG   59 (539)
                      +||+||||+|.+|+++|.+|++ .|++|+|||+.+..++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~   40 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDEN   40 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccC
Confidence            5999999999999999999999 7999999999877643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.43  E-value=0.00011  Score=79.00  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      +.+||+||||+|.+|+++|.+|++.|++|+++|+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            35799999999999999999999999999999998654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.43  E-value=0.00011  Score=77.18  Aligned_cols=57  Identities=7%  Similarity=0.014  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..+.+++++.+|++++|+++.||.||+...
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G  247 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  247 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCC
Confidence            467788888888999999999999999751015666788889999999999997544

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.36  E-value=0.00011  Score=80.38  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~~   57 (539)
                      +.+||+||||+|.+|+++|.+|++ .|++|++||+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            467999999999999999999999 89999999998654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.35  E-value=0.0001  Score=78.79  Aligned_cols=53  Identities=9%  Similarity=0.140  Sum_probs=42.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..   ++++..|.+ +|+++.||.||+...
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~---~~~v~~v~~-~g~~i~~D~Vi~a~G  288 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG---NGKVEKIIT-DKNEYDVDMVILAVG  288 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC---SSSCCEEEE-SSCEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc---CCcEEEEEE-CCcEEECCEEEECCC
Confidence            46778888888899999999999999963   344445665 788999999997543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.35  E-value=0.00012  Score=78.46  Aligned_cols=53  Identities=17%  Similarity=0.164  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      ++.+.+.+.++..|.++++++.|++|..+  +++ +.|++++|+++.||.||+...
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~--~~~-~~v~l~dG~~i~aD~Vv~a~G  279 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAAVG  279 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec--CCe-EEEEECCCCEEECCEEEECCC
Confidence            57788888888999999999999999765  444 478889999999999997543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.35  E-value=0.00011  Score=77.49  Aligned_cols=53  Identities=9%  Similarity=0.028  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..   ++++..|.+ +|+++.||.||+...
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~d~vi~a~G  243 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKVVT-DKNAYDADLVVVAVG  243 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEEEE-SSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEc---cCcEEEEEE-CCCEEECCEEEECcC
Confidence            46778888888899999999999999964   344445665 677899999997543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.35  E-value=0.00013  Score=75.30  Aligned_cols=54  Identities=17%  Similarity=0.079  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..+  ++. +.|++++|+++.||.||+...
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~d~vv~a~G  240 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA--GEG-LEAHLSDGEVIPCDLVVSAVG  240 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEECcC
Confidence            367788888888999999999999999765  343 578888999999999997543

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.34  E-value=0.00014  Score=78.89  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG   59 (539)
                      ..||+||||+|.+|+++|.+|+++ |++|+|||+.....+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            569999999999999999999998 999999999877643

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.34  E-value=7.7e-05  Score=77.56  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~  336 (539)
                      .++.+.+.+.++..|.++++++.|++|.    .+   +|++++|+++.+|.||+.+..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~----~~---~v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIR----EH---EIVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEC----SS---EEEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEEC----CC---eEEECCCCEEeeeEEEECCCC
Confidence            3677888888899999999999999984    22   366789999999999975543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.31  E-value=0.00015  Score=75.60  Aligned_cols=51  Identities=22%  Similarity=0.237  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~  336 (539)
                      .++.+.+.+.++..|.++++++.|++|. +  +    +|++++|+++.||.||+....
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~----~v~~~~g~~i~~D~vi~a~G~  237 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D--G----VVLLDDGTRIAADMVVVGIGV  237 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T----EEEETTSCEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C----EEEECCCCEEEcCEEEECcCC
Confidence            3677888888899999999999999996 3  3    567789999999999976443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.22  E-value=0.00021  Score=73.43  Aligned_cols=47  Identities=19%  Similarity=0.164  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (539)
                      ++.+.+.+.++..|.++++++.|++|.    .+   +|++++|+ +.+|.||+..
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~----~~---~v~~~~g~-i~~D~vi~a~  230 (367)
T 1xhc_A          184 ELSNMIKDMLEETGVKFFLNSELLEAN----EE---GVLTNSGF-IEGKVKICAI  230 (367)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEEC----SS---EEEETTEE-EECSCEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEE----ee---EEEECCCE-EEcCEEEECc
Confidence            677888888889999999999999984    12   46678887 9999999643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.19  E-value=0.00019  Score=75.48  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar---~G~~VlvlE~~~~~   57 (539)
                      ..||||||||++|+.+|..|++   .|.+|+++|++++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4699999999999999999999   89999999999965

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.14  E-value=0.00031  Score=73.17  Aligned_cols=54  Identities=11%  Similarity=0.131  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      .++.+.+.+.++..|.++++++.|++|..+   +++.+|++++|+++.||.||+...
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~---~~~~~v~~~dg~~i~aD~Vv~a~G  238 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGE---GQLEQVMASDGRSFVADSALICVG  238 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECS---SSCCEEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEecc---CcEEEEEECCCCEEEcCEEEEeeC
Confidence            467778888888999999999999999643   355688899999999999997543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.13  E-value=0.00013  Score=78.36  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+.+||||||+|.+||++|++|.++|...+++|+.+..|+.+..
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~   80 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKIC   80 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEE
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCccee
Confidence            34599999999999999999999987776666666666665543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.12  E-value=0.00027  Score=76.73  Aligned_cols=36  Identities=11%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~G   58 (539)
                      .||+|||||++|++||..|++.  |.+|+++|+++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4899999999999999999998  89999999999987

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.87  E-value=0.00059  Score=73.11  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ++..|||||+|.+|+.+|..|++.|++|+++|++++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            456899999999999999999999999999999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.80  E-value=0.00095  Score=68.97  Aligned_cols=39  Identities=10%  Similarity=0.243  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ++..|||||||++|+.||..|++.|.+|+++|++++++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            356899999999999999999888999999999998773

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.79  E-value=0.00071  Score=69.92  Aligned_cols=38  Identities=18%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~~~GG~   60 (539)
                      ..|||||+|.+|+++|.+|++.|+  +|+++|++++++.+
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~   42 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC   42 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc
Confidence            369999999999999999998874  89999999876544

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.69  E-value=0.00097  Score=70.10  Aligned_cols=48  Identities=10%  Similarity=0.137  Sum_probs=40.0

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|+++.    .+   .|++++|+++.+|.||+.
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~----~~---~v~~~~g~~~~~D~vl~a  235 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAIN----GN---EITFKSGKVEHYDMIIEG  235 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEec----CC---eeeecCCeEEeeeeEEEE
Confidence            4777888888899999999999999873    22   366789999999999964

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.44  E-value=0.0016  Score=68.24  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~   57 (539)
                      .|||||||.+|++||..|++.|  .+|+++|++++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            6999999999999999999876  789999999874

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.31  E-value=0.016  Score=51.23  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|+|+|+|.-|+.+|..|++.|++|+++|++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4579999999999999999999999999999874

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.30  E-value=0.018  Score=60.40  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..+|+|||+|..|+.+|..|++.|.+|+++|+++++..+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            468999999999999999999999999999999987653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.16  E-value=0.019  Score=49.22  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|||+|..|...|..|++.|++|.++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.16  E-value=0.015  Score=59.81  Aligned_cols=38  Identities=16%  Similarity=0.026  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++..+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            47999999999999999999999999999999988665

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.95  E-value=0.032  Score=48.46  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|+|.|--|...|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            479999999999999999999999999999974

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.86  E-value=0.03  Score=49.34  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|+|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34579999999999999999999999999999963

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.77  E-value=0.023  Score=56.11  Aligned_cols=37  Identities=16%  Similarity=0.053  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.++.-.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~  182 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRA  182 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCc
Confidence            3799999999999999999999999999999987643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.45  E-value=0.028  Score=59.15  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.41  E-value=0.037  Score=47.84  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|.-|..+|..|++.|++|.++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.39  E-value=0.036  Score=56.66  Aligned_cols=40  Identities=15%  Similarity=0.194  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+++++....
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL  184 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Confidence            3579999999999999999999999999999999876643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.30  E-value=0.037  Score=58.26  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999988755

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.21  E-value=0.035  Score=56.57  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            5799999999999999999999999999999998766

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.19  E-value=0.047  Score=57.26  Aligned_cols=38  Identities=26%  Similarity=0.196  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            35899999999999999999999999999999988754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.17  E-value=0.04  Score=58.11  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            57999999999999999999999999999999988763

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.17  E-value=0.039  Score=57.90  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+.+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            5799999999999999999999999999999988654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.97  E-value=0.051  Score=49.29  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~   55 (539)
                      +..-.|+|+|+|..|..+|..|.+. |++|+++|++.
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3345799999999999999999999 99999999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=93.80  E-value=0.048  Score=53.57  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            47999999999999999999999999999987653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.77  E-value=0.057  Score=55.83  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            57999999999999999999999999999999987654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.75  E-value=0.061  Score=44.38  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~   55 (539)
                      ..|+|+|+|..|..+|..|.+.| ++|.+++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            46999999999999999999999 9999999863

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=93.67  E-value=0.055  Score=56.73  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4799999999999999999999999999999988654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.42  E-value=0.076  Score=52.02  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||+|.-|...|..|+++|++|.++|+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3469999999999999999999999999999875

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.39  E-value=0.063  Score=53.70  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|.|||+|.-|.-.|..++++|++|+++|.++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.32  E-value=0.084  Score=55.45  Aligned_cols=52  Identities=13%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCCC----CCCC-CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226            5 ESESELPVPPYP----PIEP-TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus         5 ~~~~~~~~~~~~----~l~~-~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ....+|-.|+-.    +..+ .-..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus        32 ~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           32 SLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            344456666322    2222 224699999999999999999999999999999876

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.24  E-value=0.12  Score=52.33  Aligned_cols=50  Identities=16%  Similarity=0.172  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        10 ~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .|+.|-++=.+.++||||||||++|+++|+.|+++|++|+|+|+++..||
T Consensus         5 ~~~~~~~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A            5 HHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             ---------CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             hhhHHHhhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            35555555555679999999999999999999999999999999975554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=93.23  E-value=0.071  Score=56.10  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc
Confidence            4799999999999999999999999999999988653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.22  E-value=0.049  Score=57.61  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            35799999999999999999999999999999988765

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.15  E-value=0.082  Score=52.54  Aligned_cols=48  Identities=10%  Similarity=0.009  Sum_probs=33.3

Q ss_pred             CCCCCCCCC-CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226            9 ELPVPPYPP-IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus         9 ~~~~~~~~~-l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +|+.+++.+ .......|.|||+|.-|...|..|+++|++|.++|++..
T Consensus         7 ~~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A            7 HHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             -----------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             ccccccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            444443333 333346799999999999999999999999999999763

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.07  E-value=0.063  Score=53.45  Aligned_cols=49  Identities=20%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             CCCCCCC-CCCCCCC-CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226            7 ESELPVP-PYPPIEP-TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus         7 ~~~~~~~-~~~~l~~-~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      |+-|+.+ +|++.+. ....|.|||+|.-|...|..|+++|+ +|.++|++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A            7 HSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             ------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             cccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            5567766 5665432 34679999999999999999999999 999999973

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.02  E-value=0.085  Score=55.55  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4799999999999999999999999999999998765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=92.94  E-value=0.093  Score=54.64  Aligned_cols=38  Identities=26%  Similarity=0.214  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  187 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER  187 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999887554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=92.93  E-value=0.079  Score=45.37  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|+|-.|..+|..|.+.|++|.++|++.
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            59999999999999999999999999999863

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=92.91  E-value=0.082  Score=56.05  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            5799999999999999999999999999999988754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.84  E-value=0.11  Score=56.04  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ....|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            4467999999999999999999999999999998753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.83  E-value=0.088  Score=55.29  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=92.74  E-value=0.1  Score=55.44  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .-.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            357999999999999999999999999999999987654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.74  E-value=0.1  Score=56.10  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45799999999999999999999999999999875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=92.71  E-value=0.077  Score=56.10  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            5799999999999999999999999999999988754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.70  E-value=0.085  Score=53.04  Aligned_cols=36  Identities=11%  Similarity=0.048  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++++...
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            479999999999999999999999999999987654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.69  E-value=0.096  Score=53.30  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=32.3

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .++++....|.|||.|.-|...|..|+++|++|.++|++.
T Consensus        16 ~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           16 ENLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             chhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3566677889999999999999999999999999999874

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.68  E-value=0.097  Score=54.05  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  180 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV  180 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch
Confidence            5799999999999999999999999999999988754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.58  E-value=0.11  Score=54.31  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            38999999999999999999999999999999887654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=92.58  E-value=0.1  Score=51.13  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  179 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR  179 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC
Confidence            579999999999999999999999999999998773

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.54  E-value=0.087  Score=49.29  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|+|--|...|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.49  E-value=0.12  Score=50.92  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++|++|.++|++.
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999874

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.43  E-value=0.081  Score=55.59  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=92.41  E-value=0.11  Score=55.92  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ....|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            4467999999999999999999999999999998753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.41  E-value=0.12  Score=49.52  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .......|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34445679999999999999999999999999999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.31  E-value=0.13  Score=47.85  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|.|||+|.-|...|..|+++|++|.+++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35699999999999999999999999999998865

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.22  E-value=0.12  Score=52.08  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|.|||+|..|...|..|+++|++|.+++++.
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34579999999999999999999999999999863

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=92.22  E-value=0.11  Score=54.71  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  222 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR  222 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc
Confidence            5799999999999999999999999999999988653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=92.20  E-value=0.11  Score=50.76  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++.+++
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            47999999999999999999999999999999887

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=92.10  E-value=0.22  Score=51.73  Aligned_cols=41  Identities=27%  Similarity=0.294  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH   60 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~   60 (539)
                      |.++||||||+|++|+++|+.|+++| ++|+|+|+++.+|+.
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~g   62 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSG   62 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCCC
Confidence            46799999999999999999999999 999999996666543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=92.09  E-value=0.2  Score=54.17  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .+.+|||||||||++|+.+|+.|++.|++|+++|+++..||...
T Consensus        15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~   58 (561)
T 3da1_A           15 SEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS   58 (561)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence            34679999999999999999999999999999999987776543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.09  E-value=0.12  Score=54.73  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||+|.-|+..|..|+++|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4679999999999999999999999999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.06  E-value=0.12  Score=54.91  Aligned_cols=37  Identities=8%  Similarity=0.020  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR  213 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc
Confidence            4799999999999999999999999999999988754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=92.05  E-value=0.14  Score=52.57  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc
Confidence            469999999999999999999999999999999876543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.94  E-value=0.14  Score=49.76  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.93  E-value=0.14  Score=51.10  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|.++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            469999999999999999999999999999976

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=91.91  E-value=0.16  Score=52.91  Aligned_cols=38  Identities=11%  Similarity=0.082  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~  185 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL  185 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc
Confidence            37999999999999999999999999999999987543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.90  E-value=0.18  Score=53.21  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=91.89  E-value=0.12  Score=54.39  Aligned_cols=36  Identities=11%  Similarity=0.035  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|.+|+-+|..|++.|++|+++++++.+-
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~  233 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM  233 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence            479999999999999999999999999999987653

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=91.88  E-value=0.14  Score=50.54  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            34579999999999999999999999999999875

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=91.87  E-value=0.14  Score=53.84  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR  213 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC
Confidence            5799999999999999999999999999999987654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.87  E-value=0.15  Score=51.17  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ...|.|||+|..|...|..|++.|+ +|.++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            3579999999999999999999998 999999975

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.83  E-value=0.16  Score=52.99  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...+.|||.|..||..|+.||++|++|+.+|-+.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3579999999999999999999999999999874

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=91.80  E-value=0.13  Score=50.79  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++++.+.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC
Confidence            479999999999999999999999999999998763

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.78  E-value=0.14  Score=51.31  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||+|.-|...|..|+++|++|.++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~   36 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGA   36 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH
Confidence            3579999999999999999999999999999853

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=91.76  E-value=0.14  Score=53.71  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=91.75  E-value=0.13  Score=53.67  Aligned_cols=35  Identities=9%  Similarity=0.004  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~~   57 (539)
                      .+|+|||+|.+|+-+|..|++.|.+ |+++++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=91.75  E-value=0.15  Score=50.43  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            479999999999999999999999999999998764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=91.74  E-value=0.13  Score=51.26  Aligned_cols=41  Identities=15%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCC
Q 009226           15 YPPIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNP   55 (539)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G----~~VlvlE~~~   55 (539)
                      -+++++....|.|||+|.-|...|..|+++|    ++|.+++++.
T Consensus        15 ~~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           15 TENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CchhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            3566777778999999999999999999999    8999999875

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.74  E-value=0.16  Score=52.38  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ...|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~  191 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV  191 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh
Confidence            3479999999999999999999999999999999875543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=91.70  E-value=0.14  Score=50.31  Aligned_cols=36  Identities=17%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++++.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc
Confidence            479999999999999999999999999999988763

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=91.68  E-value=0.32  Score=48.84  Aligned_cols=42  Identities=31%  Similarity=0.350  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ++||||||||++|+++|+.|+++|++|+|+|+++..+|...+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~   43 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH   43 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCC
Confidence            489999999999999999999999999999999887665433

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=91.62  E-value=0.14  Score=53.43  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            4799999999999999999999999999999987654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=91.61  E-value=0.14  Score=50.83  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~  191 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC
Confidence            579999999999999999999999999999998763

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.61  E-value=0.14  Score=50.75  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|.+.|..|+++|++|.++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            469999999999999999999999999999975

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=91.60  E-value=0.36  Score=49.04  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=35.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      .++||||||||++|+++|+.|+++|++|+||||++..+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            35899999999999999999999999999999998765

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.58  E-value=0.16  Score=51.52  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|.|||+|.-|...|..|+++|++|.++++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34689999999999999999999999999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=91.51  E-value=0.22  Score=49.02  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.||| +|.-|...|..|+++|++|.+++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3699999 999999999999999999999998764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.50  E-value=0.15  Score=50.59  Aligned_cols=37  Identities=8%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++.+.+..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4799999999999999999999999999999987644

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=91.28  E-value=0.26  Score=51.71  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ...|+|||+|..|+-+|..|++.|.+|+++++.+++....
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  211 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL  211 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC
Confidence            3579999999999999999999999999999998876543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.26  E-value=0.17  Score=49.67  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            369999999999999999999999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.21  E-value=0.17  Score=54.47  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=33.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            799999999999999999999999999999987654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.08  E-value=0.2  Score=52.51  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|.|||.|.+|+++|..|++.|++|.+.|+++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            35799999999999999999999999999999763

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=90.95  E-value=0.4  Score=51.81  Aligned_cols=39  Identities=26%  Similarity=0.433  Sum_probs=36.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..+||||||||++|+.+|+.|++.|++|+|+|+++..+|
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            469999999999999999999999999999999986665

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=90.90  E-value=0.18  Score=49.67  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|..|+-.|..|++.|.+|.++++.+++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC
Confidence            469999999999999999999999999999988764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.90  E-value=0.19  Score=52.82  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            469999999999999999999999999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.73  E-value=0.21  Score=52.30  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...+.|||+|.-|+..|..|+++|++|+++|++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999999999999999999999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.73  E-value=0.19  Score=49.40  Aligned_cols=35  Identities=17%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|.|||+|.-|...|..|+++|++|.++|++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45799999999999999999999999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=90.72  E-value=0.15  Score=53.27  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~   57 (539)
                      ...|+|||+|.+|+-+|..|++.  |.+|.++++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45799999999999999999999  9999999998653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=90.69  E-value=0.24  Score=52.34  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  236 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG  236 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc
Confidence            47999999999999999999999999999999987653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=90.68  E-value=0.23  Score=51.87  Aligned_cols=38  Identities=16%  Similarity=-0.001  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            46999999999999999999999999999999887543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=90.66  E-value=0.21  Score=52.53  Aligned_cols=38  Identities=13%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .-.|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  224 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR  224 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc
Confidence            35799999999999999999999999999999888653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.66  E-value=0.23  Score=52.50  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-CC-eEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~-G~-~VlvlE~~~~   56 (539)
                      ..|.|||+|.-|+..|..|+++ |+ +|+++|++..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.64  E-value=0.21  Score=46.88  Aligned_cols=35  Identities=14%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|+|.|| |.-|..+|..|.+.|++|.++.|+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            3457999997 9999999999999999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=90.54  E-value=0.21  Score=49.24  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++.+.+..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            5699999999999999999999999999999987644

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.48  E-value=0.2  Score=52.25  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=90.46  E-value=0.55  Score=44.13  Aligned_cols=52  Identities=17%  Similarity=0.061  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHC-CcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~-Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+.++.. |.+++ ++.|++|..+  ++++++|++.+|++++||.||..
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~--~~~v~~v~~~~g~~i~a~~VV~A  120 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLE--GNRVVGVRTWEGPPARGEKVVLA  120 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE--TTEEEEEEETTSCCEECSEEEEC
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            36677777777776 77777 6899999876  67777888888989999999953

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.43  E-value=0.25  Score=46.70  Aligned_cols=36  Identities=14%  Similarity=0.236  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +.....|+|||+|-.|...|..|.++|.+|+|++++
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            445678999999999999999999999999999975

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=90.35  E-value=0.24  Score=48.86  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +..|.|||+|.-|...|..|+ +|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            467999999999999999999 999999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=90.35  E-value=0.44  Score=48.09  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ++||||||||++|+++|+.|+++|++|+|+|+++..|
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5899999999999999999999999999999988766

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=90.31  E-value=0.21  Score=50.08  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.|+|||+|..|+-+|..|++.|.+|.++++.+.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            4799999999999999999999999999999987654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.06  E-value=0.25  Score=52.72  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc
Confidence            57999999999999999999999999999999876543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=89.94  E-value=0.27  Score=49.23  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +..|.|||+|.-|...|..|+++|++|.+++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            367999999999999999999999999999986

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=89.85  E-value=0.3  Score=47.20  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|+|.|||.-|..++..|.+.|++|..+.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999998754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.85  E-value=0.27  Score=48.03  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3589999999999999999999999999999754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.83  E-value=0.19  Score=49.42  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|--|.+.|..|+++|++|.+++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            469999999999999999999999999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.81  E-value=0.27  Score=50.58  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999999863

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=89.81  E-value=0.16  Score=49.47  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +.....|+|||+|-.|+..|..|.+.|.+|+|++++..
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            33456799999999999999999999999999998653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=89.80  E-value=0.33  Score=47.99  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|.|||+|.-|...|..|++.|++|.+++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36799999999999999999999999999998753

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=89.78  E-value=0.15  Score=48.42  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ...|.|||+|.-|...|..|+++|++|..+++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            357999999999999999999999999999985

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=89.75  E-value=0.24  Score=53.81  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36999999999999999999999999999987

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=89.74  E-value=0.18  Score=52.63  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..|.|||.|.+|+++|..|++.|++|.+.|.++..
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            46999999999999999999999999999998765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=89.74  E-value=0.3  Score=52.83  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            47999999999999999999999999999999887654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.73  E-value=0.3  Score=45.62  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|++.|++|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999863

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.67  E-value=0.31  Score=48.53  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||+|.-|...|..|+++|++|.++|++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3579999999999999999999999999999874

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=89.64  E-value=0.34  Score=50.82  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            5799999999999999999999999999999988754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.54  E-value=0.37  Score=47.95  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|+  +|.++|+++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999976

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=89.53  E-value=0.72  Score=48.80  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar---~G~~VlvlE~~~~   56 (539)
                      +||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            699999999999999999999   9999999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=89.50  E-value=0.3  Score=48.57  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|+++|+ +|.++|++.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            479999999999999999999998 999999975

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.46  E-value=0.3  Score=48.63  Aligned_cols=34  Identities=15%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|.|||+|.-|...|..|+++|++|.++ +++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            3457999999999999999999999999999 654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.43  E-value=0.3  Score=48.36  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|+++|+  +|.++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999999  999999874

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=89.41  E-value=0.29  Score=47.73  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            5799999999999999999999999999999988755

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=89.39  E-value=0.24  Score=52.98  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.+.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999998875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=89.33  E-value=0.37  Score=50.99  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  220 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY  220 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc
Confidence            57999999999999999999999999999999987653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=89.32  E-value=0.73  Score=49.41  Aligned_cols=36  Identities=8%  Similarity=0.165  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar---~G~~VlvlE~~~~   56 (539)
                      ..+||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            46899999999999999999999   9999999999754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.17  E-value=0.2  Score=52.75  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+.|||+|+|-.|...|..|+..|++|+++|++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999974

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=89.16  E-value=0.2  Score=46.92  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEE-eccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLH-LDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~Vlv-lE~~~   55 (539)
                      ...|.|||+|.-|...|..|+++|++|.+ ++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            45799999999999999999999999999 88864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=89.06  E-value=0.38  Score=48.47  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||.|.-|...|..|+++|++|.++|+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999885

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=89.03  E-value=0.32  Score=50.58  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|.|||+|.-|+..|..|++ |++|+++|++..
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            3579999999999999999998 999999998753

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=88.99  E-value=0.32  Score=51.46  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      |.+.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            456789999999999999999999999999999863

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=88.98  E-value=0.35  Score=44.66  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.6

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.||| +|..|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            489999 99999999999999999999999863

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=88.89  E-value=0.41  Score=47.25  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||.|.-|...|..|+++|++|.++|++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.84  E-value=0.36  Score=51.09  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=88.83  E-value=0.19  Score=43.52  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|++.|.+|.+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            469999999999999999999999999999863

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=88.76  E-value=0.73  Score=47.95  Aligned_cols=37  Identities=27%  Similarity=0.541  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .++||||||||++||++|..|+++|.+|+|+|+++..
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            3689999999999999999999999999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.57  E-value=0.29  Score=50.02  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999885

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=88.52  E-value=0.43  Score=47.81  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|++.|+ +|.++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999975

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=88.52  E-value=0.37  Score=46.83  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++++++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            47999999999999999999999999999999876

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.49  E-value=0.29  Score=47.82  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|.-|...|..|+++|++|.++|++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=88.47  E-value=0.5  Score=49.53  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~   57 (539)
                      ..+|+|||+|..|+-+|..+.+.|. +|++++++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3579999999999999999999997 59999998765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=88.47  E-value=0.38  Score=47.14  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++++.+++.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc
Confidence            4799999999999999999999999999999988744

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.47  E-value=0.32  Score=49.24  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.45  E-value=0.35  Score=50.32  Aligned_cols=33  Identities=30%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..-|||.|.-|+..|..|+++|++|+++|++..
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578999999999999999999999999999854

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=88.41  E-value=0.24  Score=49.79  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G-------~~VlvlE~~~~   56 (539)
                      ...|.|||+|.-|...|..|+++|       ++|.+++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            357999999999999999999999       99999999876

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.39  E-value=0.3  Score=48.54  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~   53 (539)
                      .|.|||+|.-|...|..|+++|++|.++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            489999999999999999999999999998

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=88.35  E-value=0.67  Score=47.10  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .++||||||||++|+++|..|+++|.+|+|+|+++..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=88.33  E-value=0.42  Score=50.51  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999999999999999875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=88.31  E-value=0.38  Score=45.99  Aligned_cols=36  Identities=14%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G----~~VlvlE~~~~   56 (539)
                      ....|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            3457999999999999999999999    79999998865

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=88.22  E-value=0.48  Score=47.32  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|.|||+|..|..+|..|+..|. +|.++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            479999999999999999999998 999999874

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=88.18  E-value=0.35  Score=49.84  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|..|+..|..|++ |++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.16  E-value=0.41  Score=49.55  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|||||.|-.|..+|..|.+.|++|+++|++..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4699999999999999999999999999999853

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=88.09  E-value=1  Score=47.52  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEec--------cCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE--------~~~~~GG~~~s   63 (539)
                      .+|||||||||.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            46899999999999999999999 999999999        46788997654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.09  E-value=0.43  Score=47.21  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|--|.+.|..|+ +|.+|.++++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            46999999999999999999 999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=88.08  E-value=0.43  Score=47.19  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|..|...|..|+..|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999999999  999999874

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=88.01  E-value=0.97  Score=47.29  Aligned_cols=37  Identities=14%  Similarity=0.048  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~G   58 (539)
                      ..||||||||++|++||..|++.  |++|+++|++++.|
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            47999999999999999999999  99999999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=87.98  E-value=1.1  Score=47.36  Aligned_cols=43  Identities=33%  Similarity=0.364  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEec--------cCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE--------~~~~~GG~~~s   63 (539)
                      .++||||||||.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            46999999999999999999999 999999999        46788997654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=87.94  E-value=0.5  Score=47.02  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~   54 (539)
                      |....|.|||+|..|..+|..|++.|. +|.++|.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            444679999999999999999999999 99999997

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=87.75  E-value=0.57  Score=46.37  Aligned_cols=42  Identities=14%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +.++-......|+|.|| |.-|..+|..|++.|++|.+++++.
T Consensus        12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            44444445567999997 9999999999999999999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=87.66  E-value=0.79  Score=46.81  Aligned_cols=37  Identities=27%  Similarity=0.412  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .++||||||||++||++|+.|++.|++|+|+|+++..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~   40 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP   40 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4589999999999999999999999999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=87.60  E-value=0.62  Score=49.09  Aligned_cols=34  Identities=9%  Similarity=-0.023  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++++...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP  219 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc
Confidence            4699999999999999999999999999998653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=87.55  E-value=0.42  Score=50.34  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|+..|..|+++  |++|+++|++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  89999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=87.53  E-value=0.48  Score=46.30  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=87.45  E-value=1.1  Score=48.50  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC------CC---------cEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA------SG---------QDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~------~G---------~~i~Ad~VI~  332 (539)
                      +.+.+.|.+.++..|++|++++.|++|..++ ++++++|++.      +|         .+++||.||.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~-~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~  211 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHE-DGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIF  211 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECT-TSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CCCEEEEEeCCccccCCCCcccccCCceEEECCEEEE
Confidence            4788888888888999999999999998762 4677788775      33         6899999995

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=87.39  E-value=0.67  Score=49.37  Aligned_cols=33  Identities=12%  Similarity=0.046  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~  243 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI  243 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc
Confidence            469999999999999999999999999999853

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.18  E-value=0.53  Score=46.63  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~   55 (539)
                      .|.|||+|..|...|..|++.  |++|.++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999996  89999999985

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=87.15  E-value=1.1  Score=47.02  Aligned_cols=42  Identities=31%  Similarity=0.296  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||||||||++|++||..|++.|++|+++|+ +.+||.+..
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            479999999999999999999999999999999 789997654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=87.14  E-value=0.37  Score=47.44  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-----C-CeEEEecc
Q 009226           23 FDLIVIGTGLPESVISAAASAS-----G-KSVLHLDP   53 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~-----G-~~VlvlE~   53 (539)
                      ..|.|||+|.-|...|..|+++     | ++|.++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999987

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=87.11  E-value=0.67  Score=44.90  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|-.|..+|..|++.|.+|.+++|+.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            469999999999999999999999999998863

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.06  E-value=0.55  Score=45.36  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=87.04  E-value=1.3  Score=46.64  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~G   58 (539)
                      +..+||||||+|++|+.||..|++.  |.+|+++|++++.|
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4579999999999999999999887  89999999998765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=87.01  E-value=0.5  Score=45.48  Aligned_cols=33  Identities=9%  Similarity=-0.088  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|+|||+|..|+-+|..|++.| +|.++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            57999999999999999999999 9999998776

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=87.01  E-value=0.52  Score=49.84  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|+..|..|+++  |++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  79999999863

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=86.98  E-value=0.54  Score=47.42  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|+|+|+|..|..+|.++.+.|++|.++|+++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            489999999999999999999999999998754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=86.94  E-value=0.55  Score=46.84  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~-aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||.|-+|+. +|..|.+.|++|.+.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            36999999999996 78889999999999999865

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=86.87  E-value=0.5  Score=48.70  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999999999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=86.86  E-value=0.63  Score=49.98  Aligned_cols=37  Identities=14%  Similarity=0.012  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -.++|||+|..|+-.|..+++-|.+|+++++...+-+
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~  260 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG  260 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc
Confidence            5799999999999999999999999999998765533

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.80  E-value=0.49  Score=47.06  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++| ++|.++|++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999985

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.78  E-value=0.56  Score=45.70  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999875

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=86.73  E-value=0.59  Score=49.27  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999999863

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=86.69  E-value=1.5  Score=38.87  Aligned_cols=50  Identities=20%  Similarity=0.074  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+.++..|.+++++ +|++|..+  ++. +.|++++| ++.||.||..
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~--~~~-~~v~~~~g-~i~ad~vI~A  105 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM--GGV-FEVETEEG-VEKAERLLLC  105 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC--SSS-EEEECSSC-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc--CCE-EEEEECCC-EEEECEEEEC
Confidence            477888888888999999999 99999765  333 56777777 8999999964

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=86.63  E-value=0.5  Score=45.17  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4899999999999999999999 9999999874

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=86.43  E-value=0.34  Score=49.71  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~   60 (539)
                      .++||||||+|++|+++|+.|+++  |++|+|||+++..+|.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            359999999999999999999999  9999999998765553

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=86.42  E-value=1.4  Score=47.06  Aligned_cols=37  Identities=5%  Similarity=0.170  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar---~G~~VlvlE~~~~~   57 (539)
                      ..+||||||||++|+++|+.|++   .|.+|+|+|+.+..
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            46899999999999999999999   99999999997643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=86.34  E-value=1.2  Score=46.39  Aligned_cols=42  Identities=31%  Similarity=0.317  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||+|||+|++|+++|..|++.|++|+++|+ +.+||.+..
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   45 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVI   45 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccc
Confidence            369999999999999999999999999999999 789997643

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.28  E-value=0.59  Score=45.03  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|.|||.-|...+.+|.++|++|..+.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            469999999999999999999999999999865

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=86.21  E-value=0.55  Score=49.26  Aligned_cols=35  Identities=11%  Similarity=0.035  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHh--------------------hCCC-eEEEeccCCCC
Q 009226           23 FDLIVIGTGLPESVISAAAS--------------------ASGK-SVLHLDPNPFY   57 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La--------------------r~G~-~VlvlE~~~~~   57 (539)
                      -.|+|||+|..|+-+|..|+                    +.|. +|.++++++..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            57999999999999999999                    6787 79999997653

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=86.19  E-value=1.4  Score=46.66  Aligned_cols=40  Identities=38%  Similarity=0.464  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      |+.+||||||||++|+++|+.|++.|++|+++|+++..+|
T Consensus         1 M~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            1 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            3569999999999999999999999999999999875443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=86.15  E-value=0.55  Score=44.98  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~   54 (539)
                      ..|+|||+|-.|+.+|..|+++|. +++++|+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            579999999999999999999996 89999985

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.10  E-value=0.71  Score=42.34  Aligned_cols=32  Identities=31%  Similarity=0.364  Sum_probs=29.3

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|.| +|..|..++..|.++|++|.++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            489999 59999999999999999999999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=86.04  E-value=0.64  Score=47.53  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|+|+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999875

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.92  E-value=0.73  Score=44.89  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC---eEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK---SVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~---~VlvlE~~~   55 (539)
                      ...|.|||+|.-|...|..|+++|+   +|.++|++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3569999999999999999999999   999999875

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=85.87  E-value=0.74  Score=45.96  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      |....|.|||+|..|.+.|..|+..|. +|.++|.+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            344679999999999999999999999 999999976

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=85.83  E-value=0.88  Score=47.79  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            479999999999999999999999999999854

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=85.80  E-value=0.66  Score=45.26  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|++.|++|.++|++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            369999999999999999999999999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=85.78  E-value=0.34  Score=45.67  Aligned_cols=32  Identities=6%  Similarity=-0.030  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|..|...|..|.+.|+ |+++|++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            469999999999999999999999 99999874

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=85.78  E-value=0.68  Score=48.93  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.78  E-value=0.78  Score=41.46  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|.|+ |.-|..++..|.+.|++|.++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            46999998 9999999999999999999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=85.73  E-value=0.56  Score=52.23  Aligned_cols=33  Identities=30%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=85.65  E-value=0.69  Score=49.10  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=85.60  E-value=0.68  Score=45.03  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+ |.-|...|..|+++|++|.+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36999999 9999999999999999999999864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=85.55  E-value=0.71  Score=44.65  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++|+  +|.++|++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999999  999999874

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=85.52  E-value=1.6  Score=44.80  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=46.2

Q ss_pred             EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecC--CCcEEEEEeCCCcEEEcCEEEE
Q 009226          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       271 ~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~--~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      ..||.....++.++|.+.++..|++++++++|++|..+++  +++ +.|++.+| +++||.||+
T Consensus       101 ~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A          101 QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             EEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence            3577654568899999999999999999999999976410  133 56777665 799999995

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=85.41  E-value=1.1  Score=43.80  Aligned_cols=35  Identities=20%  Similarity=0.098  Sum_probs=29.6

Q ss_pred             CcccEEEECCC---hhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTG---LPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaG---l~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...-|+|.|++   --|..+|..|++.|.+|.+++++.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34568999985   678999999999999999999874

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=85.40  E-value=0.61  Score=46.43  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|..|...|..|+++|+  +|.++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=85.38  E-value=0.7  Score=46.83  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|+|+|-.|+.+|..|...|.+|.+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=85.29  E-value=1.8  Score=45.96  Aligned_cols=36  Identities=11%  Similarity=0.255  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhh------------CCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASA------------SGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar------------~G~~VlvlE~~~~   56 (539)
                      ..+||||||||++|+++|+.|++            .|.+|+|+|+++.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            35899999999999999999999            9999999999764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.24  E-value=0.71  Score=46.90  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|-.|+.+|..|+..|.+|+++|++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=85.16  E-value=0.88  Score=45.35  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ....|.|||+|..|.+.|..|+..|. +|.++|.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            34579999999999999999999998 999999976

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=85.03  E-value=0.73  Score=48.65  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999863

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=85.01  E-value=0.77  Score=46.06  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|++.|++|.+.++++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            359999999999999999999999999999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=84.99  E-value=0.83  Score=42.07  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=29.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|.|| |.-|..++..|.++|++|.++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4899997 9999999999999999999998863

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=84.96  E-value=1.4  Score=46.63  Aligned_cols=38  Identities=39%  Similarity=0.621  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      +.++||||||||++||++|+.|++.|++|+|+|+++..
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~   42 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP   42 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence            34699999999999999999999999999999999854

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=84.92  E-value=1.5  Score=42.67  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        10 ~~~~~~~~l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ++.|..+...+...-|+|.|+ |--|..+|..|++.|++|.+++++.
T Consensus        14 ~~~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           14 LQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             CCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            444444444455556888875 6789999999999999999998864

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=84.90  E-value=0.91  Score=44.07  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .|+|.|| |+-|...+.+|.++|++|.++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4899997 999999999999999999999887644

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=84.80  E-value=0.88  Score=44.17  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|+|||+|-+|..+|.+|++.|.+|.|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999998874

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=84.60  E-value=0.53  Score=47.82  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-------CeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G-------~~VlvlE~~~~   56 (539)
                      .|.|||+|.-|...|..|+++|       ++|.+++++..
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=84.58  E-value=0.75  Score=44.58  Aligned_cols=33  Identities=6%  Similarity=0.139  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|-.|..+|..|++.|.+|.++.|+.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999863

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=84.54  E-value=1.8  Score=47.10  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYG   58 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~-~~G   58 (539)
                      .+|||||||||++|+.||++|++.|.+|+++|++. .+|
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccC
Confidence            46999999999999999999999999999999984 444

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=84.38  E-value=1.8  Score=46.89  Aligned_cols=42  Identities=29%  Similarity=0.244  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      +.++||||||+|++||+||+.|+++|.+|+||||++..||..
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s   46 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            346899999999999999999999999999999998876643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=84.35  E-value=0.73  Score=44.18  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4699999999999999999999999 99999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=84.33  E-value=0.69  Score=51.57  Aligned_cols=36  Identities=8%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIG--aGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            4799998  99999999999999999999999988 543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=84.30  E-value=0.91  Score=44.94  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|.|||+|..|...|..|+..|. +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            469999999999999999999997 999999874

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=84.28  E-value=0.77  Score=44.44  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|++ |++|.+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 99999999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=84.27  E-value=0.52  Score=48.41  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh-CCCeEEEec
Q 009226           23 FDLIVIGTGLPESVISAAASA-SGKSVLHLD   52 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE   52 (539)
                      ..|.|||+|.-|...|..|++ +|++|.+++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            369999999999999999998 599999999

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=84.22  E-value=0.73  Score=45.52  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~   55 (539)
                      .|.|||+|..|...|..|+++|  .+|.++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            5999999999999999999999  7999999874

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=84.17  E-value=1.2  Score=48.16  Aligned_cols=42  Identities=21%  Similarity=0.204  Sum_probs=37.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      -+|..+||||||||++|+++|+.|++.|.+|+|+|+++..++
T Consensus        19 ~~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~   60 (591)
T 3i3l_A           19 SHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY   60 (591)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC
Confidence            345679999999999999999999999999999999976544

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=84.10  E-value=0.86  Score=48.75  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            45799999999999999999999999999998654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=84.07  E-value=0.63  Score=51.74  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            359999999999999999999999999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=84.04  E-value=0.51  Score=54.39  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|.++|+++++..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            4799999999999999999999999999999988754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=84.03  E-value=1.1  Score=44.06  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ...|+|||+|-.|..+|..|++.|. +|.++.|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3469999999999999999999997 999998863

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=83.90  E-value=1.9  Score=47.46  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .++||||||+|++||+||+.|+++|.+|+||||....||..
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            46899999999999999999999999999999998776543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=83.85  E-value=0.89  Score=46.35  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|||+|-.|+.+|..|+..|.+|+++|++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=83.79  E-value=0.93  Score=43.21  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            469999999999999999999999999999874

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=83.69  E-value=1.1  Score=44.53  Aligned_cols=43  Identities=19%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             CcccEEEECCC-hhHHHHHHHHhhCCCeEEEeccC--------CCCCCCccc
Q 009226           21 TAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN--------PFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaG-l~GL~aA~~Lar~G~~VlvlE~~--------~~~GG~~~s   63 (539)
                      ....|+|||+| +.|..+|..|.+.|.+|++++++        ..+++..++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~  227 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHH  227 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhccc
Confidence            44689999999 67999999999999999988664        556654443

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=83.68  E-value=0.94  Score=44.93  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        22 ~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..-|+|.|| |.-|..++..|.+.|++|.+++++..-
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            356999998 999999999999999999999988643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=83.60  E-value=0.85  Score=47.83  Aligned_cols=35  Identities=11%  Similarity=0.051  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      .....|+|||+|-.|...|..|.+.|.+|+|++++
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            34567999999999999999999999999999985

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=83.47  E-value=0.85  Score=42.17  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|.| +|.-|...+..|.+.|++|.++.++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            4699999 59999999999999999999999974

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=83.39  E-value=1.7  Score=47.31  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      +.++||||||+|++||.||+.|+++|.+|+||||....||..
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            346899999999999999999999999999999988766643

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=83.22  E-value=1.7  Score=42.69  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=37.5

Q ss_pred             CCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus         8 ~~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+|...++..|..  ..|.|||.|.-|...|..|+..|.+|+.++++..
T Consensus       110 g~w~~~~~~~l~g--~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  156 (290)
T 3gvx_A          110 GIFRQSPTTLLYG--KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSV  156 (290)
T ss_dssp             TCCCCCCCCCCTT--CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCC
T ss_pred             cccccCCceeeec--chheeeccCchhHHHHHHHHhhCcEEEEEecccc
Confidence            3565554444443  4699999999999999999999999999998754

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=83.13  E-value=0.85  Score=44.87  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|-+||-|.-|+..|..|.++|++|.++|++..
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            599999999999999999999999999998764

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=83.12  E-value=1.3  Score=49.21  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      --.|.|||+|..|.-.|..++++|++|+++|.++.
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            34799999999999999999999999999998753

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=83.06  E-value=1.1  Score=42.42  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC----eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK----SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~----~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++|+    +|.++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            369999999999999999999998    999999974

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=83.05  E-value=0.47  Score=40.74  Aligned_cols=54  Identities=4%  Similarity=-0.072  Sum_probs=40.8

Q ss_pred             CcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226          322 GQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (539)
Q Consensus       322 G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~  377 (539)
                      .++++||+||++ |...+..  +.++|+||..+....++..++...|.++.+++||=
T Consensus         3 ~~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW   57 (130)
T 2e1m_B            3 TQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWW   57 (130)
T ss_dssp             CEEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGG
T ss_pred             ceEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCC
Confidence            356899999986 3333333  35788899887776677778999999999999964

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=82.89  E-value=1.2  Score=44.34  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      ...|.|||+|..|+.+|..|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999998  999999874

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=82.83  E-value=1.5  Score=44.62  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|.|||+|-.|..+|.++.+.|++|.++|.+.
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            479999999999999999999999999999764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=82.83  E-value=0.91  Score=52.64  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~   56 (539)
                      .|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            79999999999999999999995 8999999873

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=82.62  E-value=1  Score=43.02  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~   53 (539)
                      .|.|||+|.-|...|..|+++|++|.+.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            488999999999999999999999999876

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=82.60  E-value=0.95  Score=43.91  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|+|||+|-.|...|..|++.|.+|.+++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3569999999999999999999999999999873

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=82.52  E-value=1.1  Score=45.11  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=30.6

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|+|.|| |.-|..++..|.+.|++|.++.++..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            35999997 99999999999999999999998753

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=82.41  E-value=1.1  Score=45.68  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      .+-.|||+|+|-+|..+|..|...|. +|.++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            34679999999999999999999998 999999984

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=82.40  E-value=1.1  Score=43.90  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3569999999999999999999999999999874

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=82.37  E-value=1  Score=41.49  Aligned_cols=32  Identities=13%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|.| +|.-|..++..|.++|++|..+.|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV   34 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            489999 89999999999999999999999875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=82.35  E-value=0.98  Score=43.87  Aligned_cols=33  Identities=9%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~   55 (539)
                      ..|.|||+|.-|...|..|+++  |.+|.++|++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4699999999999999999998  68999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=82.34  E-value=1.3  Score=44.67  Aligned_cols=52  Identities=13%  Similarity=0.131  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe-CCCc--EEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l-~~G~--~i~Ad~VI~  332 (539)
                      .++.+.|.+.+...|+++++++.|++|..+  ++..+.|++ .+|+  +++||.||.
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~~g~~~~~~a~~vV~  157 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDL--QGERPYVTFERDGERLRLDCDYIAG  157 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECT--TSSSCEEEEEETTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEe--cCCceEEEEecCCcEEEEEeCEEEE
Confidence            467788888888889999999999999764  222245666 6887  799999994

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=82.29  E-value=1.2  Score=44.51  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEeccC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~   54 (539)
                      ...|.|||+|..|.++|..|+..|.  +|.++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            3579999999999999999999997  89999985

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.28  E-value=1.8  Score=41.19  Aligned_cols=34  Identities=21%  Similarity=0.153  Sum_probs=29.5

Q ss_pred             cccEEEECC-Ch-hHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGT-GL-PESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGa-Gl-~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..-|+|.|+ |- -|..+|..|++.|.+|++++++.
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            345899998 74 89999999999999999999863

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=82.26  E-value=1.5  Score=42.09  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+.|||+|-.|...|..|.+.|.+|.+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999873

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=82.08  E-value=2.3  Score=41.08  Aligned_cols=53  Identities=8%  Similarity=0.054  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeC---------CC-----cEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLA---------SG-----QDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---------~G-----~~i~Ad~VI~~  333 (539)
                      .++.+++.+.+.. .|.++++++.|++|..+  ++++.+|++.         +|     ++++||.||..
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~--~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~A  186 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS  186 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE--TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec--CCeEEEEEEeccccccccCccccCceEEEECCEEEEC
Confidence            5677777777765 69999999999999877  6777777653         32     57999999953

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=82.04  E-value=0.94  Score=50.07  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.1

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIG--aGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .+|+|||  +|..|+-+|..|++.|++|.++++.+.+....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            4599999  99999999999999999999999998876543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=82.01  E-value=1.2  Score=45.43  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~   54 (539)
                      ..-.|+|+|+|-+|..+|..|...|. +|.++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            44679999999999999999999998 89999998

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=81.94  E-value=0.95  Score=43.97  Aligned_cols=31  Identities=19%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|++.|++|.+++ +.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            69999999999999999999999999998 54

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=81.83  E-value=2.2  Score=46.72  Aligned_cols=35  Identities=34%  Similarity=0.498  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+|||||||||++|+.||++|++.|.+|+++|++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            46999999999999999999999999999999984

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=81.56  E-value=1.4  Score=41.53  Aligned_cols=42  Identities=19%  Similarity=0.113  Sum_probs=31.0

Q ss_pred             CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009226           13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        13 ~~~~~l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ++.+..+....-|+|.|| |--|..+|..|++.|.+|.+++++
T Consensus         5 ~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   47 (249)
T 3f9i_A            5 HHHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN   47 (249)
T ss_dssp             ----CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            344445555566888886 556999999999999999999885

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=81.56  E-value=1.4  Score=42.99  Aligned_cols=32  Identities=6%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|-.|..+|..|++.| +|.+.+++.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            46999999999999999999999 999998863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=81.49  E-value=1.3  Score=46.72  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..-|+|+|+|-.|..+|..|++.|.+|++.|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4569999999999999999999999999999874

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=81.44  E-value=2.5  Score=41.75  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ....|.|||.|.-|...|..|...|.+|++++++..
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~  176 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPN  176 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            345699999999999999999999999999998753

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=81.43  E-value=1.2  Score=46.56  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..|+|+|+|..|...|..|++.|.+|.+++++.
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            469999999999999999999999999998863

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=81.43  E-value=1.3  Score=43.34  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3569999999999999999999999999999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=81.39  E-value=2.5  Score=42.18  Aligned_cols=36  Identities=17%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ....|.|||.|..|...|..|+..|.+|++++++..
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            345699999999999999999999999999998754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=81.31  E-value=1.5  Score=41.60  Aligned_cols=45  Identities=11%  Similarity=0.106  Sum_probs=29.3

Q ss_pred             CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        10 ~~~~~~~~l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +|.+++..-+.  .-|+|.|+ |--|..+|..|++.|.+|.+++++..
T Consensus        12 ~~~~~~~~~m~--k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           12 SGLVPRGSHMS--KNILVLGGSGALGAEVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             ----------C--CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             ccccccccccC--CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            33334444443  34888886 56899999999999999999998764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=81.24  E-value=1.4  Score=41.96  Aligned_cols=38  Identities=11%  Similarity=-0.038  Sum_probs=30.7

Q ss_pred             CCCCcccEEEECC---ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           18 IEPTAFDLIVIGT---GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        18 l~~~~~DVIIIGa---Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ......-|+|.|+   |--|..+|..|++.|.+|.++++++
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            3334456899996   4679999999999999999998873

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=81.18  E-value=2.5  Score=42.07  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             CCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus         8 ~~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+|....+..|.  ...|.|||.|.-|...|..|...|.+|+.++++.
T Consensus       128 g~W~~~~~~~l~--g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  173 (324)
T 3hg7_A          128 RLWQSHPYQGLK--GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG  173 (324)
T ss_dssp             TCCCCCCCCCST--TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCcCCCCcccc--cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCCh
Confidence            357654444444  3569999999999999999999999999999875

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=80.87  E-value=1.5  Score=43.11  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|+|.|| |.-|..+|..|++.|++|.+++++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            45899997 99999999999999999999998753

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=80.66  E-value=2.7  Score=41.59  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ....|.|||.|.-|...|..|...|.+|++++++..
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  176 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDI  176 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            345699999999999999999999999999998753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=80.59  E-value=1.1  Score=41.85  Aligned_cols=33  Identities=9%  Similarity=0.174  Sum_probs=29.9

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226           23 FDLIVIG-TGLPESVISAAASASG-KSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIG-aGl~GL~aA~~Lar~G-~~VlvlE~~~   55 (539)
                      ..|+|.| +|.-|..+|..|++.| ++|.++.|+.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~   58 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQP   58 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence            4699999 6999999999999999 8999999874

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=80.58  E-value=1.2  Score=43.68  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|..|.+.|..|++.|.  +|.++|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            58999999999999999999998  999999875

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=80.58  E-value=1.5  Score=43.25  Aligned_cols=43  Identities=16%  Similarity=0.074  Sum_probs=30.2

Q ss_pred             CCCCCCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           11 PVPPYPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        11 ~~~~~~~l~~~~~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      |.++...+.+  ..|+|.| +|.-|..++..|.+.|++|.+++++.
T Consensus        12 ~~~~~~~~~~--~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   55 (333)
T 2q1w_A           12 SGLVPRGSHM--KKVFITGICGQIGSHIAELLLERGDKVVGIDNFA   55 (333)
T ss_dssp             ---------C--CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CceeeecCCC--CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4455555554  3599998 69999999999999999999999864

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=80.54  E-value=2.1  Score=42.67  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|.|||.|..|...|..|+..|.+|++++++.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            34579999999999999999999999999999865

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=80.32  E-value=1.4  Score=47.41  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..++|||.|--|...|..|.+.|++|+++|+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            5799999999999999999999999999999875

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=80.31  E-value=2.9  Score=41.45  Aligned_cols=47  Identities=13%  Similarity=0.113  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus         8 ~~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+|...+...|  ....|.|||.|.-|...|..|+..|.+|+.++++..
T Consensus       127 g~W~~~~~~~l--~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          127 ALWKPLPEYTR--EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             TCCCCCCCCCS--TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             cccCCCCCCCc--CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            45654433333  345799999999999999999999999999998754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=80.30  E-value=2.1  Score=42.01  Aligned_cols=36  Identities=8%  Similarity=0.077  Sum_probs=31.3

Q ss_pred             CCCcccEEEECCC-hhHHHHHHHHhhCCCeEEEeccC
Q 009226           19 EPTAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        19 ~~~~~DVIIIGaG-l~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +.....|+|||+| +.|.-+|..|.+.|.+|+++.++
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            3345689999999 68999999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	539
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-67
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	2e-20
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-26
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	4e-21
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-18
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	9e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  224 bits (572), Expect = 1e-67
 Identities = 90/356 (25%), Positives = 141/356 (39%), Gaps = 48/356 (13%)

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
                +D        S       D   +  +     S+++ +  R FN+D+   ++L+  
Sbjct: 177 GKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEG-RRFNIDLV-SKLLYSR 234

Query: 122 DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRF 181
              +DL++KS  S Y EFK+I        +  +  VP SRA +F  K L ++EK  LM+F
Sbjct: 235 GLLIDLLIKSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKF 293

Query: 182 FKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVS 241
                 +       E +         + F+E+L   KL   ++  VL++IAM        
Sbjct: 294 LTFCVEY-------EEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTS-- 344

Query: 242 EYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP 301
                T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  
Sbjct: 345 ----CTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHS 398

Query: 302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDN 361
           V  L+ D+ S   K V    GQ I+S   +++ S+    +                    
Sbjct: 399 VQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC------------------- 439

Query: 362 KGKVARGICITRSSLKPDLSNFLVIFPPRSLFPE----QVTSIRVLQLGGNLAVCP 413
             +V+R  C          SN  V   P S        +       Q+  N   CP
Sbjct: 440 -SRVSR-DCYNDLP-----SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCP 488

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.1 bits (228), Expect = 2e-20
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
          P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 4  PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 63

Query: 80 SSVCPDPLYSDVEI 93
          + V  +      +I
Sbjct: 64 NDVVTENSMWQEQI 77

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (267), Expect = 1e-26
 Identities = 70/316 (22%), Positives = 144/316 (45%), Gaps = 27/316 (8%)

Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +    
Sbjct: 4   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
                                    R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 64  EERESKFG---------------KDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 107

Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +    + ++ +  
Sbjct: 108 QVSGSYVFKQG-KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSY----KEDDLSTH 162

Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
              +   +   E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 163 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQP---ARPSFERILLYCQS 219

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 220 VARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-T 276

Query: 321 SGQDILSHKLVLDPSF 336
                 +  ++ DP++
Sbjct: 277 KLGTFKAPLVIADPTY 292

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.4 bits (214), Expect = 4e-21
 Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 364 KVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA 423
           +++R + IT  S+    ++  V             ++RV++L  +   C  G ++++ + 
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTC 63

Query: 424 LCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQ 477
           +       ++ L   +  L            +  ++E+ +  KP LLW+  +  
Sbjct: 64  MSS--KTAREDLERVVQKL--------FTPYTEIEAENEQVEKPRLLWALYFNM 107

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.7 bits (205), Expect = 3e-18
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 33/322 (10%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +           
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL------ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
                              +            P+ L      V ++L +  + YL+FK +
Sbjct: 61  -------------LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVV 107

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V      D      V   
Sbjct: 108 EGSFVYKGG-KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD-- 164

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
               ++   +   K  L   +     +A+A+   D  + +  L   + INR+ LY+ S+ 
Sbjct: 165 --PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL---ETINRIKLYSESLA 219

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +       GV  + G
Sbjct: 220 RYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENG--KVVGV-KSEG 274

Query: 323 QDILSHKLVLDPSFTVPGSLAS 344
           +     +L+ DPS+ VP  +  
Sbjct: 275 EVARCKQLICDPSY-VPDRVPI 295

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 39.2 bits (90), Expect = 9e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 4   NESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61
           ++SE +  +   P       D++V+G+G   +  SAA SA+  G  V+ ++  P  G + 
Sbjct: 1   DKSERQAALASAPHDT---VDVVVVGSGG--AGFSAAISATDSGAKVILIEKEPVIGGN- 54

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
           + L+   +            +   P     +       +            S   V +  
Sbjct: 55  AKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMT 114

Query: 122 DHAVDLM 128
               DL 
Sbjct: 115 AMGADLT 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	539
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.95
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.85
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.83
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.76
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.71
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.57
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.42
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.34
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.32
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.32
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.31
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.31
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.22
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.17
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.16
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.12
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.95
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	98.82
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.78
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.72
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.71
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.66
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.65
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.63
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.62
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.6
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.57
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.54
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.51
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.51
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.5
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.49
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.46
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.46
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.42
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.41
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.39
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.38
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.38
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.35
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.34
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.34
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.31
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.31
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.29
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.29
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.28
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.28
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.26
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.23
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.23
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.21
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.17
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.16
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.15
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.15
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.13
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.11
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.01
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.96
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.95
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.94
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.77
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.51
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.47
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.4
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.37
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.36
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.34
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.31
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.3
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.28
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.23
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.08
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.05
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.02
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.01
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.69
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.66
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.62
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.61
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.55
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.5
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.36
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.32
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.22
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.2
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.07
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.95
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	95.93
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.85
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.75
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.73
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.72
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.7
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.64
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.64
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.63
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.6
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.38
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.21
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.11
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.85
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.66
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.49
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.44
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.37
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.81
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.73
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.61
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.33
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.14
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.09
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	92.95
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.84
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.82
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.53
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.45
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.41
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.24
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.07
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.7
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.63
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.57
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.94
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	90.88
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.82
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.57
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.43
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.41
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.07
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.06
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.72
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.71
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.68
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	89.67
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.59
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	89.35
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.17
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	88.89
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.67
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.63
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	88.52
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.39
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.36
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.23
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.04
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	87.83
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	87.3
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	87.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.04
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.47
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	85.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	85.83
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.41
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	85.28
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	84.6
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.55
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.45
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.38
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.26
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.85
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	83.5
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.49
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	83.44
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.33
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	83.25
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.67
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	82.67
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	82.64
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	81.54
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	81.47
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	81.01
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	80.74
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	80.3

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-57  Score=477.69  Aligned_cols=351  Identities=34%  Similarity=0.559  Sum_probs=275.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCC----------------
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVC----------------   83 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~----------------   83 (539)
                      |++|||||+||||.++++|++|||+|+||||+|+|++|||.++||+++++.+|+.+.+......                
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            5789999999999999999999999999999999999999999999999999997654321100                


Q ss_pred             -----CCCcccccccccc--------------------------------------------------------------
Q 009226           84 -----PDPLYSDVEISNY--------------------------------------------------------------   96 (539)
Q Consensus        84 -----~~~~~~~~~~~~~--------------------------------------------------------------   96 (539)
                           ....+.++++.++                                                              
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                 0000000000000                                                              


Q ss_pred             -----------------------------------------------ccccccCCCCCeEEecCCCEEEecChHHHHHHh
Q 009226           97 -----------------------------------------------ASRLLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (539)
Q Consensus        97 -----------------------------------------------~~~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~  129 (539)
                                                                     ..+.+.+..|+|+|||. |++++++|.++++|+
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~-Pk~l~a~g~lv~~Li  242 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  242 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc-chheecccHHHHHHH
Confidence                                                           00001134699999997 999999999999999


Q ss_pred             cCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCc
Q 009226          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (539)
Q Consensus       130 ~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (539)
                      ++++.+|+||+.++++|++. +|++++||++++++|+++.+++.+||+||||++++..+... +      +.+.++.+.|
T Consensus       243 ~S~v~rYlEFk~v~~~~v~~-~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~-~------~~~~~~~~~~  314 (491)
T d1vg0a1         243 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-P------DEYRAYEGTT  314 (491)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-H------HHHHTTTTSB
T ss_pred             HcChhhheeEEEeceEEEec-CCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC-c------cccccccCCc
Confidence            99999999999999999886 89999999999999999999999999999999999887532 1      1134556799


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHH
Q 009226          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (539)
Q Consensus       210 ~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~  289 (539)
                      |.+||+++++++.+++++.|+|+|...+.      .++.+++.++++|+.|+|+||++  +|+||+||.|+|+|+|||++
T Consensus       315 ~~e~l~~~~l~~~~~~~i~~aial~~~~~------~~~~~~l~ri~~yl~Slg~yG~s--pflyp~YG~gEipQ~FcR~~  386 (491)
T d1vg0a1         315 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMC  386 (491)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSSS--SEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHhheeccCCCC------ccHHHHHHHHHHHHHHHHhhCCC--CeEeecCCcchHHHHHHHHH
Confidence            99999999999999999999999864222      35789999999999999999975  59999999999999999999


Q ss_pred             HHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEE
Q 009226          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGI  369 (539)
Q Consensus       290 a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i  369 (539)
                      |+.||+|+||++|++|.++++++++.+|.+++|++++|++||++|+|...+.                    .+++.|. 
T Consensus       387 AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~--------------------~~~v~r~-  445 (491)
T d1vg0a1         387 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--------------------CSRVSRD-  445 (491)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT--------------------TTTCCGG-
T ss_pred             HhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc--------------------cceeeeh-
Confidence            9999999999999999998778889899999999999999999998763221                    1223331 


Q ss_pred             EEecCCCCCCCCceEEEeCCCCCCCCCCce-----EEEEEeCCCCccCCC
Q 009226          370 CITRSSLKPDLSNFLVIFPPRSLFPEQVTS-----IRVLQLGGNLAVCPL  414 (539)
Q Consensus       370 ~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~-----v~v~~~ss~~~~cP~  414 (539)
                      ++.+     .+++.+|+.||.....+ +..     +.+.+++++.++||+
T Consensus       446 c~~~-----~~s~~~i~~~p~~~~~~-d~~v~~a~~~~~~~~p~~~~cP~  489 (491)
T d1vg0a1         446 CYND-----LPSNVYVCSGPDSGLGN-DNAVKQAETLFQQICPNEDFCPA  489 (491)
T ss_dssp             GSSS-----CCTTEEEECCCCSSSSS-HHHHHHHHHHHHHHSTTCCSSCC
T ss_pred             hhcC-----CCceEEEECCCCcCCcc-chhhhhHhhhhhhcCCCCCcCCC
Confidence            2223     23556666666554322 222     122456888899985

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-37  Score=296.40  Aligned_cols=292  Identities=25%  Similarity=0.498  Sum_probs=228.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (539)
                      |+++|||||||||++||+||++||++|++|+||||++++||+++|++++++..+.......          ...     .
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~----------~~~-----~   66 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS----------KEE-----R   66 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCC----------HHH-----H
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccc----------ccc-----c
Confidence            5678999999999999999999999999999999999999999999988754443222110          000     0


Q ss_pred             ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (539)
Q Consensus        99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l  178 (539)
                      .........|++|+. |++++.++.+.+.+...+..++.+|+.+++.+++. ++...++|.++.+++.....+..+++.+
T Consensus        67 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (297)
T d2bcgg1          67 ESKFGKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRM  144 (297)
T ss_dssp             HHHHCCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHH
T ss_pred             cccccccccceeccC-cccccCCCcceeeeeeccccccccccccCcccccc-cCCccccccchhhhhhccccccccchhh
Confidence            001123467889995 99999999999999999999999999999888765 7889999999999999888889999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHH
Q 009226          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (539)
Q Consensus       179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l  258 (539)
                      ++|...+..+......    ..........++.++++++++++.++.++.+.+.+......   ...+....+.++..+.
T Consensus       145 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  217 (297)
T d2bcgg1         145 KKFLEWISSYKEDDLS----THQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDY---LQQPARPSFERILLYC  217 (297)
T ss_dssp             HHHHHHHHHCBTTBGG----GSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG---GGSBHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcccc----chhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccc---cchhhhhhhhhhhhhh
Confidence            9988777665322110    11112344578999999999999999988776544322111   1245566677777777


Q ss_pred             HhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009226          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (539)
Q Consensus       259 ~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~  337 (539)
                      .+.+.++.  +++.||+||+++|+++|++.++.+|++|++|++|++|..+++++++++|+ ++|++++||+||++|++.
T Consensus       218 ~~~~~~~~--~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~  293 (297)
T d2bcgg1         218 QSVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYF  293 (297)
T ss_dssp             HHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGC
T ss_pred             hccccccc--CcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhc
Confidence            77776654  34889999999999999999999999999999999998875567777775 689999999999998876

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.9e-21  Score=162.39  Aligned_cols=109  Identities=17%  Similarity=0.299  Sum_probs=81.5

Q ss_pred             cceEEEEEEEecCCCCCCCC--ceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeeccccchHHHHHHHH
Q 009226          362 KGKVARGICITRSSLKPDLS--NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAAL  439 (539)
Q Consensus       362 ~~~vsr~i~I~~~~l~~~~~--~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~  439 (539)
                      +.+++|+|+|+++|+.+..+  ...+++||...+  ..++||++++|+++++||+|+||+|+||..+  .+++++|++++
T Consensus         2 ~~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~--~~~~v~vl~~ss~~~vCP~G~yv~~~St~~t--~~~~~~L~~a~   77 (113)
T d1vg0a2           2 YRQISRAVLITDGSVLRTDADQQVSILTVPAEEP--GSFAVRVIELCSSTMTCMKGTYLVHLTCMSS--KTAREDLERVV   77 (113)
T ss_dssp             CEEEEEEEEEESSCSSCCSCCCCCEEEEECCSST--TSCCEEEEEECGGGTSSCTTCEEEEEEEECS--SCHHHHHHHHH
T ss_pred             cEEEEEEEEEECCCCCCCCCCccEEEeecCcccC--CCCCEEEEEecCCcccCCCCCEEEEEEEcCC--CCHHHHHHHHH
Confidence            45799999999999876442  234444443322  4689999999999999999999999999653  48999999999


Q ss_pred             HHHHhhhhcCCCCCCCCccccccccCCcceEeEEeEEEEcCcc
Q 009226          440 SALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLG  482 (539)
Q Consensus       440 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~ilw~~~~~~~~~~~  482 (539)
                      ++||...+        ++..++.++.+|+|||++||+|.++++
T Consensus        78 ~~Ll~~~~--------e~~~~~~~~~kP~iLWslyf~~~d~s~  112 (113)
T d1vg0a2          78 QKLFTPYT--------EIEAENEQVEKPRLLWALYFNMRDSSD  112 (113)
T ss_dssp             HHHCBSCS--------CCC-------CCBEEEEEEEEEEECTT
T ss_pred             HHhhCccc--------cccccccccCCCeEEEEEEEcCCCCCC
Confidence            99997422        222233357799999999999998875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-19  Score=181.65  Aligned_cols=273  Identities=13%  Similarity=0.075  Sum_probs=149.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (539)
                      ||||||||++||+||..|+++|++|+||||++++||++.|+...+                                   
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~-----------------------------------   45 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK-----------------------------------   45 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTT-----------------------------------
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCC-----------------------------------
Confidence            899999999999999999999999999999999999999965422                                   


Q ss_pred             CCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHHHH
Q 009226          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (539)
Q Consensus       104 ~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~kfl  182 (539)
                         .+.+|+ |++++.... .+.+++.+.|+..+.. ...... .+..+..........     ..............+.
T Consensus        46 ---g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~-~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  114 (383)
T d2v5za1          46 ---VKYVDL-GGSYVGPTQNRILRLAKELGLETYKV-NEVERL-IHHVKGKSYPFRGPF-----PPVWNPITYLDHNNFW  114 (383)
T ss_dssp             ---TSCEES-SCCEECTTCHHHHHHHHHTTCCEEEC-CCSSEE-EEEETTEEEEECSSS-----CCCCSHHHHHHHHHHH
T ss_pred             ---CcEEeC-CceEeCCCChHHHHHHHHcCCcceec-cCccce-EEecCcccccccccc-----cchhhhhhhhhHHHHH
Confidence               233566 577775443 5667777777643321 111111 111122222211110     0011111112222222


Q ss_pred             HHHHhhcccCcc-ccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-hcccCCcchhhhhccchhHHHHHHHHHHh
Q 009226          183 KLVQGHLSLDES-EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALYNSS  260 (539)
Q Consensus       183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i-~l~~~~~~~~~~~~s~~~~l~~i~~~l~s  260 (539)
                      ............ .........+....++.+++++....+....+..... ........    ..+....+.........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  190 (383)
T d2v5za1         115 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETH----EVSALWFLWYVKQCGGT  190 (383)
T ss_dssp             HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTT----TSBHHHHHHHHHTTTCH
T ss_pred             HHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccc----hhhHHHHHHHHHhhccc
Confidence            222211111000 0001111234556789999998887776666543211 11111111    12222222221111000


Q ss_pred             hhhcc-CCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCC
Q 009226          261 IGRFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTV  338 (539)
Q Consensus       261 ~g~~g-~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~  338 (539)
                      ..... ...+....+.+|++.++++++   +..|++|++|++|++|..+  +++ +.|++++|++++||+||++ |...+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~g~~i~~~~~v~~I~~~--~~~-v~v~~~~g~~~~ad~vI~a~p~~~~  264 (383)
T d2v5za1         191 TRIISTTNGGQERKFVGGSGQVSERIM---DLLGDRVKLERPVIYIDQT--REN-VLVETLNHEMYEAKYVISAIPPTLG  264 (383)
T ss_dssp             HHHHCSTTSTTSEEETTCTHHHHHHHH---HHHGGGEEESCCEEEEECS--SSS-EEEEETTSCEEEESEEEECSCGGGG
T ss_pred             ccccccccCcceeeeccchhHHHHHHH---HHcCCeEEecCcceEEEec--CCe-EEEEECCCCEEECCEEEECCCHHHH
Confidence            00111 111224578899999998764   5679999999999999875  445 4688899999999999975 33332


Q ss_pred             CCCCcccchhhhhhhh
Q 009226          339 PGSLASSHQQLQESFQ  354 (539)
Q Consensus       339 ~~l~~~~~~~l~~~~~  354 (539)
                      .++  .++|++|..+.
T Consensus       265 ~~~--~~~p~l~~~~~  278 (383)
T d2v5za1         265 MKI--HFNPPLPMMRN  278 (383)
T ss_dssp             GGS--EEESCCCHHHH
T ss_pred             hhC--ccCCCCCHHHH
Confidence            332  24555555443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.76  E-value=5e-18  Score=165.78  Aligned_cols=46  Identities=15%  Similarity=0.370  Sum_probs=43.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhh
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~   68 (539)
                      .||+|||||++||+||++|+++|++|+||||++++||+++|++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g   46 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG   46 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCC
Confidence            4899999999999999999999999999999999999999976543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.71  E-value=5.4e-17  Score=161.21  Aligned_cols=44  Identities=14%  Similarity=0.271  Sum_probs=42.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccch
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSI   66 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~   66 (539)
                      .+|+|||||++||+||.+|+++|++|+|||+++++||++.|+..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~   74 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRN   74 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEec
Confidence            58999999999999999999999999999999999999999765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.57  E-value=7.9e-15  Score=142.69  Aligned_cols=46  Identities=20%  Similarity=0.229  Sum_probs=42.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhh
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~   68 (539)
                      .+|||||||++||+||..|+++|++|+|||+++++||+++|+..++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g   47 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG   47 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCC
Confidence            3699999999999999999999999999999999999999976543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.42  E-value=3.4e-14  Score=134.75  Aligned_cols=46  Identities=22%  Similarity=0.362  Sum_probs=42.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccccchhh
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIAD   68 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~~s~~~~~   68 (539)
                      .||||||||++||+||..|+++|+ +|+||||++++||+++|+..++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g   47 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG   47 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCC
Confidence            489999999999999999999996 7999999999999999986654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.34  E-value=8.6e-13  Score=126.15  Aligned_cols=67  Identities=21%  Similarity=0.324  Sum_probs=54.5

Q ss_pred             EeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 009226          272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (539)
Q Consensus       272 lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~-~p~~~~~~  340 (539)
                      .+|... ...+.++|.+.++..|++++++++|++|..+  ++++.+|.+++|++++||.||+ +.....|.
T Consensus       102 ~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         102 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEECCCCSSSGG
T ss_pred             eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE--CCEEEEEEeCCCCeEecCeEEEccCCccccc
Confidence            466555 4578899999999999999999999999887  7788889999999999999985 34333343

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.32  E-value=1.4e-12  Score=129.83  Aligned_cols=103  Identities=16%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      ...|+|||||++||+||..|+++|++|+|+|+++++||++.|+....                                 
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~---------------------------------   48 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE---------------------------------   48 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT---------------------------------
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC---------------------------------
Confidence            35799999999999999999999999999999999999999865321                                 


Q ss_pred             cCCCCCeEEecCCCEEEecChHHH-HHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHh
Q 009226          102 SQHPRNFNLDVSGPRVLFCADHAV-DLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFK  166 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~~~lv-~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~  166 (539)
                         ...+..|. ||++++...+.+ +.+.+     +.+|...........+|+++++|.+...+..
T Consensus        49 ---~g~~~~~~-Gphif~t~~~~v~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~P~~~~~i~~  105 (314)
T d2bi7a1          49 ---TNVMVHVY-GPHIFHTDNETVWNYVNK-----HAEMMPYVNRVKATVNGQVFSLPINLHTINQ  105 (314)
T ss_dssp             ---TCCEEETT-SCCCEEESCHHHHHHHHT-----TSCEEECCCCEEEEETTEEEEESCCHHHHHH
T ss_pred             ---CCceEEec-CceeecCccHHHHHHHHH-----hhhhhhhccccceeecceeeccCccHHHHHH
Confidence               01233455 688887766433 33322     2344443332222237899999988765543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.32  E-value=3.8e-12  Score=123.79  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ...|..|.   ..+.++|.+.++..|++++.+++|++|..+  +++ +.|++++| +++||+||+.
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~V~t~~g-~i~a~~VViA  200 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEE--CCE-EEEEECCc-EEEcCEEEEC
Confidence            44566664   578899999999999999999999999886  555 57887665 6999999964

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.9e-13  Score=129.22  Aligned_cols=47  Identities=17%  Similarity=0.289  Sum_probs=43.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhh
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~   68 (539)
                      +.+|||||||++||+||..|+++|++|+|||+++++||++.|++.++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g   51 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN   51 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCC
Confidence            46799999999999999999999999999999999999999986643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.1e-12  Score=127.48  Aligned_cols=100  Identities=17%  Similarity=0.302  Sum_probs=70.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (539)
                      .|||||||||++||+||..|++.|++|+|+|+++++||++.|+...|                                 
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g---------------------------------   47 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG---------------------------------   47 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT---------------------------------
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCC---------------------------------
Confidence            38999999999999999999999999999999999999999975543                                 


Q ss_pred             cCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccc-eeeEccCCceeecCCCHHHHH
Q 009226          102 SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDA-TFMLDADAKLCSVPDSRAAIF  165 (539)
Q Consensus       102 ~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~-~~~~~~~g~l~~vP~s~~~vf  165 (539)
                            +.++-.||++++..++.+-.+...    +.+|..... .... .+|+...+|....++.
T Consensus        48 ------~~~~~~G~h~f~t~~~~v~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~P~~~~~i~  101 (298)
T d1i8ta1          48 ------IQIHKYGAHIFHTNDKYIWDYVND----LVEFNRFTNSPLAI-YKDKLFNLPFNMNTFH  101 (298)
T ss_dssp             ------EEEETTSCCCEEESCHHHHHHHHT----TSCBCCCCCCCEEE-ETTEEEESSBSHHHHH
T ss_pred             ------EEEeecCcEEEEecchHHHHHhhc----cccceeecccccee-eeceeEEecccHHHHH
Confidence                  222222688887776544433321    223332222 2222 2789999998766544

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.22  E-value=1.2e-10  Score=114.23  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++|..|.   ..+.+++.+.+...|++++.+++|++|.++  ++++++|++.+| +|+||+||+.
T Consensus       137 ~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~~g-~i~a~~VV~a  199 (305)
T d1pj5a2         137 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  199 (305)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             eecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEe--CCEEEEEeccce-eEECCEEEEe
Confidence            45666664   478899999999999999999999999988  888899997555 7999999964

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.17  E-value=3.4e-11  Score=115.51  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=52.2

Q ss_pred             EeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCC
Q 009226          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS  341 (539)
Q Consensus       272 lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~-~p~~~~~~l  341 (539)
                      .+|.....++.+.|.+.++..|.+|+++++|++|...+++..+..+...++++++||.||+ +....+|.+
T Consensus       102 ~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGL  172 (253)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGG
T ss_pred             cccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccccccc
Confidence            4666667789999999999999999999999999876433333334456889999999985 343444443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.16  E-value=2e-11  Score=118.04  Aligned_cols=60  Identities=20%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      +.+.|..|.   ..+.++|.+.+...|++|+.+++|++|..+   ++.++|++++| +|.||+||+.
T Consensus       139 ~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~g-~i~a~~vV~A  201 (276)
T d1ryia1         139 ASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTPSG-DVWANHVVVA  201 (276)
T ss_dssp             EEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS---SSSEEEEETTE-EEEEEEEEEC
T ss_pred             EEEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEee---cceEEEecCCe-EEEcCEEEEC
Confidence            355666664   478899999999999999999999999753   45578987665 7999999964

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.12  E-value=5.7e-10  Score=109.64  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .++|||||||+|++||+||+.|+++|++|+||||++..||...
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            4679999999999999999999999999999999999988643

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.95  E-value=4.9e-09  Score=103.54  Aligned_cols=60  Identities=22%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             EeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009226          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (539)
Q Consensus       272 lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~  332 (539)
                      .+|.+|.   .+|.++|.+.++..|++++++++|.++.+++ +++++||...  +++  .|.|+.||+
T Consensus       138 ~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~-~g~V~Gv~~~~~~~~~~~i~Ak~VVl  204 (317)
T d1qo8a2         138 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAKSVVL  204 (317)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECT-TSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             cccccccccchhhhHHHHHHhhhccceeeeccchhheeecc-cccceeeEeecccceEEEEeccceEE
Confidence            3555553   3699999999999999999999999998863 7888888753  443  478999985

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.82  E-value=5.2e-09  Score=81.75  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=68.3

Q ss_pred             cceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeeccccchHHHHHHHH
Q 009226          362 KGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAAL  439 (539)
Q Consensus       362 ~~~vsr~i~I~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~  439 (539)
                      .|++.|+|||.+.|++..  .+..++++|..+++  -.+.+|+...|+....||+|+|+..+||...+ ++++..|++++
T Consensus         3 ~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~--Rk~DIYv~~~S~~h~V~~kg~yiaiVST~vET-~nPe~El~pgl   79 (97)
T d1d5ta2           3 AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN--RKSDIYVCMISYAHNVAAQGKYIAIASTTVET-TDPEKEVEPAL   79 (97)
T ss_dssp             EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-SCHHHHTHHHH
T ss_pred             ccEEEEEEEEecCCcCCCCCCccEEEEeehHHhc--cCCCEEEEEeccccccCCCCeEEEEEEEEEec-CCcHHHHHHHH
Confidence            478999999999998753  35679999987765  36789999999999999999999999998875 58999999999


Q ss_pred             HHHH
Q 009226          440 SALQ  443 (539)
Q Consensus       440 ~~l~  443 (539)
                      +.|=
T Consensus        80 ~lLg   83 (97)
T d1d5ta2          80 GLLE   83 (97)
T ss_dssp             TTTC
T ss_pred             Hhhc
Confidence            8873

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=9.7e-09  Score=80.24  Aligned_cols=80  Identities=23%  Similarity=0.392  Sum_probs=67.8

Q ss_pred             cce-EEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeeccccchHHHHHHH
Q 009226          362 KGK-VARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA  438 (539)
Q Consensus       362 ~~~-vsr~i~I~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~  438 (539)
                      .|+ +.|+|||.+.|++..  .+..++++|..+++  -.+.||+...|+....||+|+|+..+||...+ ++++..|+++
T Consensus         3 ~GqkViRaICIl~hPipnt~~a~S~QIIiPq~Qv~--Rk~DIYv~~~S~~h~V~~kg~yiAiVST~vET-~nPe~El~pg   79 (98)
T d2bcgg3           3 TGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLG--RKSDIYVAIVSDAHNVCSKGHYLAIISTIIET-DKPHIELEPA   79 (98)
T ss_dssp             EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-SCHHHHTHHH
T ss_pred             ccceEEEEEEEecCCcCCCCCCceEEEEEehHHhC--CCcCEEEEEeccccccCCCCcEEEEEEEEeec-CCcHHHHHHH
Confidence            354 999999999998753  35679999977765  36789999999999999999999999998865 5899999999


Q ss_pred             HHHHHh
Q 009226          439 LSALQK  444 (539)
Q Consensus       439 ~~~l~~  444 (539)
                      ++.|-.
T Consensus        80 l~lLG~   85 (98)
T d2bcgg3          80 FKLLGP   85 (98)
T ss_dssp             HGGGCS
T ss_pred             HHhhcc
Confidence            987753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=1.6e-09  Score=101.55  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+|||+|||+|.+|++||.+|++.|++|+++|+++.+||.+..
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~   46 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence            35799999999999999999999999999999999999997754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.71  E-value=3.8e-09  Score=98.19  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .+|||||||+|.+|+.||.++++.|++|+++|+++.+||.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~   44 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   44 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeec
Confidence            4699999999999999999999999999999999999997754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=1.1e-08  Score=92.39  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +..+|+|||||++||.||..|++.|++|+++|+++.+||...
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            347899999999999999999999999999999999999765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.65  E-value=7e-09  Score=100.40  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .++||||||||++||+||+.|++ .|++|+++|+++.+||.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            47999999999999999999987 59999999999999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.63  E-value=6.1e-09  Score=97.76  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..+|||||||+|.+||+||.+|+|.|++|+++|+++.+||.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            45799999999999999999999999999999999999996543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.62  E-value=8.5e-09  Score=101.07  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +.++||||||||++||++|..|.++|.+|+|||+++.+||.|..
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~   48 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   48 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccccc
Confidence            36799999999999999999999999999999999999998754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.60  E-value=1.3e-08  Score=94.57  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .+|||||||+|.+||+||.+|+|.|++|+++|+....||...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            579999999999999999999999999999999888776543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.57  E-value=1.8e-08  Score=102.12  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=38.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh------CCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar------~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +|||||||||++||+||+.|||      +|++|+||||+.++|.+..+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~   79 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS   79 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc
Confidence            5999999999999999999998      89999999999999887544

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.4e-08  Score=94.08  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ++|||||||+|.+|+.||..|++.|++|+++|++ .+||.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            3699999999999999999999999999999995 5898653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.51  E-value=2.9e-08  Score=97.91  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ++++||||||+|++||+||+.|+++|++|++|||++..||...
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            3468999999999999999999999999999999999998643

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.51  E-value=3.2e-08  Score=98.86  Aligned_cols=43  Identities=14%  Similarity=0.225  Sum_probs=37.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ++.+|||||||+|.+|+++|..|+++|++|+|||+....++..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            3568999999999999999999999999999999966555443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.50  E-value=5.1e-08  Score=91.85  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=36.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      +.++.+|||||||++||++|+.|+++|++|+|+||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            345679999999999999999999999999999998754443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.49  E-value=4.5e-08  Score=92.04  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226            3 GNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      |.|.+..|....++ ......+|+|||||.+||+||..|++.|++|+++|+++.+||.+..
T Consensus        31 ~~e~~~~~~p~~~~-~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          31 GEEYRRGWHPEKFR-QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             TTHHHHCCCSSCCC-CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             ChHHhcCCCCCccC-cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            44444444333333 3456789999999999999999999999999999999999998765

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=4.1e-08  Score=96.06  Aligned_cols=44  Identities=16%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      +|.+.+|||||||+|++||+||+.+++.| +|+||||.+..||..
T Consensus         2 ~~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           2 TLPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             BCCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             CCCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            35567899999999999999999999988 999999999988864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=5.7e-08  Score=91.00  Aligned_cols=38  Identities=32%  Similarity=0.294  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      +|||||||+|.+|++||.+++|.|++|+++|+++..|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            69999999999999999999999999999999877543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.42  E-value=5e-08  Score=96.37  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCcE--EEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~~--i~Ad~VI~  332 (539)
                      ..+..+|.+.+...|.+|+.+++|.++..+  +++++++..   .+|+.  |.|+.||+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak~Vvl  214 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecCeEEE
Confidence            478899999999999999999999999987  788777654   46764  78999985

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=7.1e-08  Score=86.66  Aligned_cols=40  Identities=15%  Similarity=0.405  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      .|||||||||.+|+.||.+++|.|.+|+++|++  +||.+..
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~   40 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILD   40 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccc
Confidence            389999999999999999999999999999975  7887653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.39  E-value=9.5e-08  Score=91.33  Aligned_cols=47  Identities=32%  Similarity=0.421  Sum_probs=42.5

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .-.++.+|||||||+|.+|+.+|..|++.|.+|+++|+++.+||.|-
T Consensus        36 ~~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          36 DENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             CTTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            34456789999999999999999999999999999999999999763

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.38  E-value=1.4e-07  Score=89.30  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      |+..+|+|||||++||++|..|+++|++|+||||++.++.
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            5667899999999999999999999999999999987653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.9e-08  Score=89.45  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      .+|||||||+|.+|+.||.+++|.|++|+++|+ +.+||.+
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            369999999999999999999999999999998 4567644

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=1.4e-07  Score=87.93  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYG   58 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~-~~~G   58 (539)
                      .|||||||||++|+.||+++||.|.+|++++++ +.+|
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig   39 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM   39 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhc
Confidence            599999999999999999999999999999987 3443

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=9.7e-08  Score=88.28  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      +|||||||+|.+|+.||.+++|.|++|+++|+.. +||.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            5999999999999999999999999999999964 576543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=7.5e-08  Score=95.38  Aligned_cols=43  Identities=28%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ...+|||||||+|++||.||..++++|++|+++||.+..||..
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            3468999999999999999999999999999999999888753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=7.5e-08  Score=89.99  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CeEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G-------~~VlvlE~~~~~GG~~~s   63 (539)
                      +.|+|||+|++||+||..|+++|       ++|+|+||++++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            68999999999999999999998       589999999999998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.31  E-value=2.2e-07  Score=91.88  Aligned_cols=45  Identities=22%  Similarity=0.243  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcccc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~~s~   64 (539)
                      +....|+|||||++||+||..|++.|  .+|+|+||++.+||.|..-
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~   48 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYT   48 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccccc
Confidence            44467999999999999999998877  5999999999999988653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.31  E-value=2e-07  Score=88.79  Aligned_cols=44  Identities=18%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccccch
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSI   66 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~~s~~~   66 (539)
                      +||+|||||++||++|..|+++|. +|+|+||++.++...+...+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l   46 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINI   46 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEE
Confidence            699999999999999999999995 99999999998766555443

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=1.9e-07  Score=91.62  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=38.9

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009226           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar--~G~~VlvlE~~~~~GG~~~s   63 (539)
                      ++||+|||+|++||+||..|++  .|++|+++|+++++||.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            6899999999999999999996  49999999999999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.29  E-value=1.5e-07  Score=89.85  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=36.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      |||||||+|.+|+.||..+++.|++|+++|++ .+||.|.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999999999985 5898664

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.28  E-value=2.2e-07  Score=93.04  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +-+++||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            346799999999999999999999999999999984

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.28  E-value=2e-07  Score=84.34  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCcccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~~GG~~~s~   64 (539)
                      ..|+|||||.+||.||..|+|.|++ |+|+||+++.||.++..
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            4699999999999999999999985 99999999999976553

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.26  E-value=1.6e-07  Score=87.05  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=36.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      .++|+||||+|.+|+.||..+++.|++|+++|++ .+||.|.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            3699999999999999999999999999999986 5788654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.23  E-value=3e-07  Score=91.25  Aligned_cols=42  Identities=19%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCCCCCcc
Q 009226           21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar----~G~~VlvlE~~~~~GG~~~   62 (539)
                      -++||||||+|++||+||+.|++    +|.+|+||||.+..||...
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            36899999999999999999975    7999999999998877654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=2.6e-07  Score=86.12  Aligned_cols=41  Identities=10%  Similarity=-0.059  Sum_probs=37.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~~s   63 (539)
                      ..|+|||||++||+||.+|+++  |++|+|+|+++++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            4799999999999999999886  7799999999999997653

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.21  E-value=3.4e-07  Score=91.67  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +.||+||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            5799999999999999999999999999999994

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.17  E-value=5.3e-07  Score=88.88  Aligned_cols=45  Identities=16%  Similarity=0.228  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHh-----hCCCeEEEeccCCCC--CCCccccc
Q 009226           21 TAFDLIVIGTGLPESVISAAAS-----ASGKSVLHLDPNPFY--GSHFSSLS   65 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La-----r~G~~VlvlE~~~~~--GG~~~s~~   65 (539)
                      ..|||+|||||++||++|..|+     ++|.+|+||||++.+  .|+.-+++
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~   57 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ   57 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEEC
Confidence            4699999999999999999996     689999999998765  44444444

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.16  E-value=5.2e-07  Score=90.04  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      .||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            69999999999999999999999999999993

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.15  E-value=4e-07  Score=85.46  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYG   58 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~G   58 (539)
                      .+|||||||+|.+|++||.++++.| ++|+|+|++...|
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            4799999999999999999999998 5799999987643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=4.3e-07  Score=82.13  Aligned_cols=43  Identities=12%  Similarity=0.121  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s   63 (539)
                      +..||+|||+|.+||.||.+|+|.|.+|+++|+++.-|....+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~   46 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTT   46 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccccc
Confidence            3579999999999999999999999999999998775555544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.13  E-value=5.9e-07  Score=86.49  Aligned_cols=34  Identities=15%  Similarity=0.269  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +.||+|||||++||++|.+|++.|++|+|+||++
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3699999999999999999999999999999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.11  E-value=7e-07  Score=83.06  Aligned_cols=35  Identities=31%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|||||||||.+|++||.+++|.|. +|+++|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            46999999999999999999999885 689998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=1.2e-06  Score=79.52  Aligned_cols=37  Identities=14%  Similarity=0.099  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      ..+||+|||+|.+|+.||.+|+|.|.+|+++|+....
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            4689999999999999999999999999999987664

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.96  E-value=2.2e-06  Score=86.40  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~   56 (539)
                      ..+||+||||+|.+|+++|.+|+++| ++|||||+..+
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            34699999999999999999999987 79999999543

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.95  E-value=2.5e-06  Score=86.23  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~   56 (539)
                      ++||+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999998 69999999754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=2e-06  Score=84.20  Aligned_cols=39  Identities=21%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~   60 (539)
                      ++||||||+|++||.||+.++++  |.+|+++||....||.
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence            68999999999999999999987  6799999999888775

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.77  E-value=4.9e-06  Score=82.70  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .+||+||||+|.+|+++|.+||++ ++|+|||+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            359999999999999999999987 99999999654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.51  E-value=4.6e-06  Score=77.30  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      .|+|||||+.||++|+.|+++|++|+++|+.+.++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~   36 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA   36 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence            59999999999999999999999999999866554

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.47  E-value=7.3e-05  Score=61.60  Aligned_cols=38  Identities=26%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.++|||||..|+-+|..|++.|.+|+++|+++++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            57999999999999999999999999999999998654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=2.7e-05  Score=72.39  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCCCCCcc
Q 009226           24 DLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G---~~VlvlE~~~~~GG~~~   62 (539)
                      +|||||+|.+|++||.++++.|   ++|+++|+ +.+||.|.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            7999999999999999887765   67999998 56888544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.37  E-value=0.00011  Score=61.27  Aligned_cols=40  Identities=23%  Similarity=0.213  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ...|+|||+|+.|+-+|..|++.|++|+++|+.+++-++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~   69 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY   69 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc
Confidence            3579999999999999999999999999999999875544

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.36  E-value=9.1e-05  Score=61.55  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      ..++|||||+.|+-+|..|++.|++|+++|+++++.++.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~   69 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA   69 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc
Confidence            579999999999999999999999999999999986654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.34  E-value=7.7e-05  Score=62.03  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      .+|+|||||+.|+-+|..|++.|++|+++|++++..+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            4699999999999999999999999999999998864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.31  E-value=0.00011  Score=62.03  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      ..|+|||+|+.|+-+|..|++.|++|+++|+++++..+..
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~   75 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVT   75 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccccc
Confidence            5799999999999999999999999999999999876543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.30  E-value=0.00012  Score=60.13  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.++|||+|+.|+-+|..|++.|++|+++|+.+++.-.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~   59 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT   59 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc
Confidence            46999999999999999999999999999999998643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00017  Score=59.36  Aligned_cols=38  Identities=11%  Similarity=0.042  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.|+|||+|+.|+-+|..|++.|.+|+++|+.++....
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh
Confidence            36999999999999999999999999999999998644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.23  E-value=0.00014  Score=60.02  Aligned_cols=36  Identities=8%  Similarity=0.022  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      -.|+|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            469999999999999999999999999999999885

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00031  Score=58.46  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            4799999999999999999999999999999998853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.05  E-value=0.00034  Score=57.69  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.++|||+|..|+-.|..|++.|.+|+++|+++++.-.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc
Confidence            57999999999999999999999999999999997543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.02  E-value=0.00019  Score=62.65  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCCccc
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~~~GG~~~s   63 (539)
                      ..|||||+|.+|+.+|..|++.|.  +|+++|+++.+.+....
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~   45 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS   45 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc
Confidence            369999999999999999999985  79999999987665544

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00041  Score=57.48  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      -.++|||||..|+-.|..|++.|.+|+++|+++++....
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~   62 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM   62 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhh
Confidence            479999999999999999999999999999999986543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.75  E-value=0.00058  Score=56.57  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      -.++|||+|..|+-.|..|++.|.+|+++|+++++-..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~   63 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT   63 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch
Confidence            47999999999999999999999999999999998643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.69  E-value=0.00065  Score=59.58  Aligned_cols=40  Identities=18%  Similarity=0.057  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~   62 (539)
                      -||||||+|..|+-+|..|++.|++|.+++..+.......
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~   43 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH   43 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchh
Confidence            4899999999999999999999999999998887654443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.66  E-value=0.0009  Score=54.93  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ..|+|||+|+.|+-.|..|++.|.+|.++|++++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999999999999999999875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0006  Score=62.09  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCC
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFY   57 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~~~   57 (539)
                      |+++++||||+|++|+.+|..|.+.|+  +|+++++.+++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            678999999999999999999998886  59999987654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.61  E-value=0.00069  Score=59.07  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|+|||||..|..+|..|++.|++|+|+||+..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            4699999999999999999999999999999854

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.61  E-value=0.0012  Score=54.75  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~   61 (539)
                      -.++|||+|..|+-.|..+++.|.+|+++|+.+++....
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            579999999999999999999999999999999887653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.0015  Score=53.89  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~   57 (539)
                      .++|||||..|+-.|..|++.|.+|++++++...
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            6999999999999999999999999999986544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00098  Score=52.20  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|+|+|.|.+|+++|.+|++.|.+|.+.|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4699999999999999999999999999998765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.0013  Score=56.68  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      .|||||+|.+|+-+|..|++ |.+|+++|+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~   35 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc
Confidence            48999999999999999976 77999999987653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.32  E-value=0.0054  Score=51.14  Aligned_cols=54  Identities=7%  Similarity=0.038  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.+.+.+..+..|.++++|+.|++|....+++++..|.+++|+++.||.||+.
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a  131 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAG  131 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEEC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEe
Confidence            667777788899999999999999998765466777899999999999999964

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.31  E-value=0.0057  Score=49.74  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (539)
                      .++.+.+.+..+..|.++++|+.|++|.... +++ ..|++++|+++.||.||.
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~-~~v~~~~G~~i~~D~Vi~  115 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNA-DGS-KSVTFESGKKMDFDLVMM  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSC-EEEEETTSCEEEESEEEE
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcC-CCe-EEEEECCCcEEEeCEEEE
Confidence            5788999999999999999999999997652 444 468899999999999985

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.22  E-value=0.0018  Score=56.77  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..+.|||+|..|+..|+.|+++|++|.++|+++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            358999999999999999999999999999965

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.20  E-value=0.0016  Score=58.00  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~   57 (539)
                      .|+|||||.+|+.+|..|++.+  .+|+++|+++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            5999999999999999999974  579999998876

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0027  Score=54.65  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||+|--|...|..|+++|++|.+++|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            589999999999999999999999999999764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.95  E-value=0.01  Score=48.02  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=45.3

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++|+.|++|..+. ++ ...|.+++|+++.||.||..
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g-~~~v~~~~g~~i~~D~Vi~a  114 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNA-DG-TRHVVFESGAEADYDVVMLA  114 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TS-CEEEEETTSCEEEESEEEEC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECC-CC-EEEEEECCCCEEEcCEEEEe
Confidence            4788999999999999999999999998652 44 45788899999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.93  E-value=0.0037  Score=50.92  Aligned_cols=36  Identities=8%  Similarity=0.043  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYG   58 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La---r~G~~VlvlE~~~~~G   58 (539)
                      ..++|||+|+.|+-+|..|+   ++|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            47999999999999997655   4566899999998874

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.85  E-value=0.0032  Score=56.56  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||.|..||..|+.||++|++|..+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999874

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.75  E-value=0.0019  Score=56.65  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      .|||||+|.+|+-+|..|++.|.+|.+++..+...
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~   39 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   39 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEecccc
Confidence            59999999999999999999999988888766654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.012  Score=47.57  Aligned_cols=53  Identities=11%  Similarity=0.137  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|++|..+. ++. +.|++++|+++.+|.||+.
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~D~vi~a  114 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGS-LTLELEDGRSETVDCLIWA  114 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CcE-EEEEECCCCEEEcCEEEEe
Confidence            4788888999999999999999999998752 343 4688899999999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.72  E-value=0.0048  Score=52.74  Aligned_cols=42  Identities=10%  Similarity=0.115  Sum_probs=35.3

Q ss_pred             ccEEEE--CCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226           23 FDLIVI--GTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (539)
Q Consensus        23 ~DVIII--GaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~   64 (539)
                      -.|||+  |+|..|+.+|..|++.|++|+++|+.++++-.....
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~   83 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTL   83 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchh
Confidence            356665  999999999999999999999999999886554443

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0047  Score=51.74  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCCCCCc
Q 009226           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHF   61 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar----~G~~VlvlE~~~~~GG~~   61 (539)
                      ..++|||||+.|+-+|..|++    .|.+|+++|+++++.++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            469999999999999999864    599999999999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.64  E-value=0.0057  Score=49.62  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCCC
Q 009226           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La---r~G~~VlvlE~~~~~GG   59 (539)
                      ..++|||+|+.|+-+|..|+   +.|.+|.++|+.+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            47999999999999997654   45999999999988754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.016  Score=48.32  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      ++.+.+.+.++..|.++++|+.|++|..+  +++ ..|++++|+++.||.||..
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~-~~v~l~~G~~i~aD~Vi~A  134 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  134 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEe
Confidence            57777778889999999999999999876  554 4688999999999999964

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.0071  Score=51.39  Aligned_cols=41  Identities=20%  Similarity=0.360  Sum_probs=36.0

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        15 ~~~l~~~~~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      |.++.+....|.||| .|+-|...|..|+++|++|.++|++.
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            455666667899999 79999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0048  Score=55.00  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ..|.|||||.-|...|..++++|++|.++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4799999999999999999999999999998763

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.50  E-value=0.0042  Score=55.08  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||||..|...|..++++|++|.++|+++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999975

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.38  E-value=0.0071  Score=50.16  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|+|--|...|..|.+.|++|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            58999999999999999999999999999974

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.21  E-value=0.0096  Score=50.97  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=36.1

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           16 PPIEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      |+++..+..|.|||+|..|.++|..|+..|. ++.++|.++
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            6788888999999999999999999999986 799999876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.11  E-value=0.0091  Score=51.37  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|.|||+|.-|...|..|+++|++|.++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48899999999999999999999999999974

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.85  E-value=0.012  Score=50.84  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      -.|+|||+|.+|+.|+..+.+-|-+|.++|.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            57999999999999999999999999999986

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.70  E-value=0.012  Score=48.74  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+||||.|-.|..+|..|.+.|++|+++|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999999974

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.66  E-value=0.015  Score=50.98  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -.|+|||+|.+|+.||....+-|-+|.++|.+.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            479999999999999999999999999999875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.49  E-value=0.022  Score=48.48  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~   56 (539)
                      -.|||||+|-+++=+|..|.|.| ++|.++.+++.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            46999999999999999999998 56889988765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.44  E-value=0.056  Score=43.55  Aligned_cols=52  Identities=8%  Similarity=0.042  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEE-cCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL-SHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~-Ad~VI~  332 (539)
                      .++.+.+.+..+..|.++++++.|++|.... ++. +.|++++|+++. +|.||.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~~v~~~~G~~~~~~D~Vi~  115 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIY  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CCe-EEEEECCCCEEEeCCEEEE
Confidence            4788999899999999999999999997652 443 578899999885 699985

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.048  Score=44.31  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~Ad~VI~  332 (539)
                      .++.+.+.+..+..|.++++|+.|+++..++ ++..+.+++.++     +++.||.|++
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRND-DKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeC-CCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence            5889999999999999999999999998863 555556665443     3789999885

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.81  E-value=0.019  Score=50.73  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ...|.|||+|--|++.|..|+++|++|.+..+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            3479999999999999999999999999998864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.73  E-value=0.087  Score=42.14  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe-CCC--cEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASG--QDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l-~~G--~~i~Ad~VI~~  333 (539)
                      .++++.+.+..+..|.++++|+.|++|..+  ++.. .|.+ .+|  +++.||.||++
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~--~~~~-~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEER--EDGV-TVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEE-EEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEc--CCEE-EEEEEeCCCEEEEEeEEEEEC
Confidence            478898999999999999999999999876  3333 3333 455  46899999863

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.61  E-value=0.027  Score=47.50  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~   55 (539)
                      ++.+..|.|||+|..|.++|..|+..|  .++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            345678999999999999999999998  4899999875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.33  E-value=0.03  Score=49.40  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|.|||.|..||.+|+.|| .|++|..+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            4899999999999999887 5999999998854

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.14  E-value=0.033  Score=44.18  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ..+|+|||+|.+|.-.|..|++.+++|.++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4689999999999999999999999987776654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.09  E-value=0.037  Score=47.74  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.2

Q ss_pred             cEEEE-CCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVI-GTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIII-GaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|| |+|--|...|..|+++|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47898 789999999999999999999999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.95  E-value=0.041  Score=47.00  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      .|-|||.|.-|+..|..|+++|++|.++|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4899999999999999999999999999986

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.84  E-value=0.15  Score=41.20  Aligned_cols=48  Identities=23%  Similarity=0.280  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|+++.    ++   .|+++||+++.||.||..
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~----~~---~v~l~dg~~i~~D~vi~a  119 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV----DG---VVLLDDGTRIAADMVVVG  119 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe----CC---EEEECCCCEEECCEEEEe
Confidence            4777888888899999999999999873    34   366899999999999964

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.82  E-value=0.086  Score=42.73  Aligned_cols=51  Identities=10%  Similarity=0.075  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (539)
                      .++++.+.+..+..|.++++++.|++|..   ++++..| +++|+++.||.||+.
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v-~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKV-VTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEE-EESSCEEECSEEEEC
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc---CCCEEEE-EeCCCEEECCEEEEE
Confidence            46788888888899999999999999864   4554455 579999999999863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.53  E-value=0.043  Score=47.82  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~   53 (539)
                      +.|.|||+|--|.+.|..|+++|++|.+.-+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            3689999999999999999999999999854

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.45  E-value=0.061  Score=46.54  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -+|-|||-|.-|...|..|.++|++|.++|++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            478999999999999999999999999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.41  E-value=0.16  Score=40.74  Aligned_cols=52  Identities=12%  Similarity=0.125  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC---cEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG---QDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G---~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|++|..+  ++. +.|++.++   +++.||.||+.
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-v~v~~~~~~~~~~~~~D~vlvA  117 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK--NKQ-VTVKFVDAEGEKSQAFDKLIVA  117 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC--SSC-EEEEEESSSEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe--CCE-EEEEEEECCCCEEEECCEEEEe
Confidence            588899999999999999999999999876  333 34544333   57899999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.24  E-value=0.061  Score=45.81  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|-|||.|.-|...|..|+++|++|.++|++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            48899999999999999999999999999863

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.07  E-value=0.12  Score=41.73  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCC-C--cEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|..+++|+.|++|..++ ++..+.+...+ |  +++.||.|++.
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEcc-CeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            5888999999999999999999999998652 44344555433 3  35899999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.70  E-value=0.08  Score=45.68  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      .+|-|||.|.-|...|..|.++|++|.++|++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            46899999999999999999999999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.63  E-value=0.087  Score=41.93  Aligned_cols=38  Identities=11%  Similarity=0.019  Sum_probs=32.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ++-....|+|||+|-.|..-|..|.+.|.+|+|+....
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            34456789999999999999999999999999997643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.57  E-value=0.0054  Score=56.04  Aligned_cols=37  Identities=0%  Similarity=-0.050  Sum_probs=34.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G   58 (539)
                      ...|+|||+|..|+-+|..|++.|.+|+++++++.++
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            3579999999999999999999999999999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.94  E-value=0.083  Score=45.08  Aligned_cols=32  Identities=34%  Similarity=0.377  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|+|..|+.++..+...|.+|.++|+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            58999999999999999999999999999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=90.88  E-value=0.18  Score=42.83  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=31.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~   54 (539)
                      ....|.|||+|..|.++|+.|+..|.  ++.++|.+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            34689999999999999999999998  89999987

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.82  E-value=0.16  Score=43.14  Aligned_cols=39  Identities=13%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           17 PIEPTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      --.++...|.|||+|..|.++|..|...|.  ++.++|.++
T Consensus        14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            334455689999999999999999999987  799999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=0.18  Score=40.10  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=35.5

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      +++.+....|.|+|+|=-|-..|.+..+-|++|.++|.++.
T Consensus         5 ~~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           5 TALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CTTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            44556667899999999999999999999999999998753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.43  E-value=0.23  Score=39.55  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEE---eCCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~---l~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|++|..+. +++...+.   +.+++++.||.||+.
T Consensus        63 ~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~i~~D~Vi~a  119 (121)
T d1mo9a2          63 NETRAYVLDRMKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGEMRIETDFVFLG  119 (121)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred             cchhhhhhhhhhccccEEEcCCEEEEEEecC-CceEEEEEEEeCCCCEEEEcCEEEEE
Confidence            4678888888899999999999999998763 55544443   345677999999964

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=0.13  Score=41.88  Aligned_cols=38  Identities=16%  Similarity=0.077  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..+|+|||+|-+.+-.|..|++-+.+|.++-|++..-+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~   64 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA   64 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc
Confidence            45899999999999999999999999999999886533

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.07  E-value=0.13  Score=43.69  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||.|+-|.+.|..|.++|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            48999999999999999999996  678889863

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.06  E-value=0.09  Score=44.08  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=30.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (539)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~   53 (539)
                      .+...|+|||||-.|+.-|..|.++|.+|+|+.+
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            3456799999999999999999999999999954

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.72  E-value=0.16  Score=42.59  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      .|-|||.|..|...|..|+++|++|.+.++++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            488999999999999999999999999987553

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.12  Score=44.12  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      .|+|+|+|..|+.++..+...|. +|.+.|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            59999999999999999999998 799999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.68  E-value=0.16  Score=47.91  Aligned_cols=61  Identities=25%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             EeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC--CCc--EEEcCEEEEC
Q 009226          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVLD  333 (539)
Q Consensus       272 lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~~  333 (539)
                      .+|..+.   ..+.+.|.+.+...|++|+++++|++|..++ +|+++||...  +++  .|+||.||+.
T Consensus       142 ~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~-~G~V~Gv~~~~~~~~~~~i~Ak~VIlA  209 (322)
T d1d4ca2         142 HRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKADAVVIA  209 (322)
T ss_dssp             EESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCS-SSCCCEEEEEETTTEEEEEECSEEEEC
T ss_pred             cccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccc-cccccceEEEeecccEEEEeCCeEEEc
Confidence            3454442   4788999999999999999999999998863 7788888753  233  4899999963

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.67  E-value=0.16  Score=42.53  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      ....|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            34679999999999999999999986  799999764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.17  Score=41.21  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG   59 (539)
                      ..+|+|||+|-+.+-.|..|++-.++|.++-+.+..-+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            46899999999999999999999999999999887643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.35  E-value=0.12  Score=43.68  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=24.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeE
Q 009226           23 FDLIVIGTGLPESVISAAASASGKSV   48 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~~V   48 (539)
                      ..|||||+|..|+-+|..|++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            58999999999999999999999764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.17  E-value=0.21  Score=40.91  Aligned_cols=39  Identities=18%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~   60 (539)
                      ..||+|||+|-+..-.|..|++--.+|.++-|++.+.+.
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~   72 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS   72 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc
Confidence            469999999999999999999999999999999887543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.89  E-value=0.19  Score=44.12  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      ....|+|+| +|..|..++..|.++|++|..+.|+.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            345699999 69999999999999999999998863

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.67  E-value=0.25  Score=42.15  Aligned_cols=34  Identities=12%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      ...+|+|+|+|=++-+++++|++.|.+|.++.|+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            4468999999999999999999999999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.63  E-value=0.16  Score=42.98  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|+|..|+.++..+...|.+|.++|+++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            59999999999999999999999999999863

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.52  E-value=0.18  Score=42.97  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -|+|+|+|..|+.++..+...|.+|.+++.++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            488999999999998888888999999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.39  E-value=0.2  Score=41.64  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      .|.|||+|..|.++|..|+..|. +++++|.+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            68999999999999999999886 899999765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.36  E-value=0.22  Score=41.54  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+||+|.|-.|..+|..|.+.|++|+++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            49999999999999999999999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.23  E-value=0.32  Score=39.36  Aligned_cols=54  Identities=7%  Similarity=0.121  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|+++..++ ++..+.++..+|  +++.||.|++.
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~-~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEcC-CcEEEEEEeCCCCeEEEEcCEEEEe
Confidence            4888999999999999999999999998762 443333333433  47999999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.04  E-value=0.27  Score=40.79  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            68999999999999999999987  799999776

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=87.83  E-value=0.25  Score=41.06  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999999999987  799999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=87.30  E-value=0.29  Score=40.46  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~   55 (539)
                      .|.|||+|--|.++|..|+..|  -++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            5899999999999999999998  4899999876

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.14  E-value=0.27  Score=41.19  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+.|||+|.-|.+.|..|.++|++|.+.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58899999999999999999999999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.04  E-value=0.26  Score=42.31  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             EEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226           25 LIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (539)
Q Consensus        25 VIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~   56 (539)
                      |+|+|+|-.|+.+...+...| .+|.++|.++.
T Consensus        33 VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          33 CVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            899999999999999999999 68999998764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.00  E-value=0.27  Score=44.81  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ++..|+|+|| |.-|..++.+|.++|++|..+.|+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            3567999996 99999999999999999999998753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.47  E-value=0.27  Score=41.02  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      ..|.|||+|..|+++|..|...|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            368999999999999999999885  788999764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.93  E-value=0.3  Score=40.70  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      +|.|||+ |..|.++|..|+..|.  ++.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5999995 9999999999999994  889998763

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=85.83  E-value=0.27  Score=42.33  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      .|+|+|+|..|+.++..+...|. +|.++|+++
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             EEEEECCCccchhheeccccccccccccccccc
Confidence            58899999999999999999996 799999875

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.41  E-value=0.28  Score=44.64  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +.|+|.|| |+-|...+.+|.+.|++|..+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999997 9999999999999999999999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=85.28  E-value=0.43  Score=40.51  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ...|+|+|+|=++-+++.+|.+.|. +|.|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4579999999999999999999995 799998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.60  E-value=0.35  Score=40.65  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|+|..|+.++..+...|.+|.+.+.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            48899999999999999999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.55  E-value=0.37  Score=38.06  Aligned_cols=51  Identities=12%  Similarity=0.085  Sum_probs=37.3

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe-CCCcEEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQDILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l-~~G~~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++++.|+++.    ++....... .+++++.||.||+.
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~----~~~~~~~~~~~~~~~i~~D~vi~A  113 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE----NGCLLANDGKGGQLRLEADRVLVA  113 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE----TTEEEEECSSSCCCEECCSCEEEC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc----CCeEEEEEcCCCeEEEEcCEEEEe
Confidence            4788888888999999999999999983    343222221 23357999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=0.42  Score=40.41  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .|+|+|+|-.|+.++..+...|.+|.+++.++
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            58999999999999988888999999998764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.38  E-value=0.43  Score=39.59  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=27.6

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||| |..|.++|..|+..|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            4899995 9999999999999986  588888763

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.26  E-value=0.41  Score=39.64  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            68999999999999999999885  689999764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.85  E-value=0.43  Score=39.69  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~   55 (539)
                      ++.+||+|.-|.+.|..|.++| ++|.+.+++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5889999999999999888887 9999999875

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=83.50  E-value=1.2  Score=39.74  Aligned_cols=47  Identities=21%  Similarity=0.166  Sum_probs=36.1

Q ss_pred             HHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226          287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (539)
Q Consensus       287 r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (539)
                      +.....-+.-.....|..+..+  ++++++|++.+|++++|+.||++.-
T Consensus        75 ~~l~~~~nL~i~q~~V~dli~e--~~~v~gV~t~~G~~~~AkaVILtTG  121 (230)
T d2cula1          75 YLLEGLRPLHLFQATATGLLLE--GNRVVGVRTWEGPPARGEKVVLAVG  121 (230)
T ss_dssp             HHHHTCTTEEEEECCEEEEEEE--TTEEEEEEETTSCCEECSEEEECCT
T ss_pred             HHHhhhcCHHHHhccceeeEec--ccceeeEEeccccEEEEeEEEEccC
Confidence            3444444455567788999887  7889999999999999999997543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.49  E-value=0.49  Score=41.58  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (539)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~   54 (539)
                      +....+|+|||+|-+|.-+|..|++.+.++.++=+.
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            335578999999999999999999999998887665

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.44  E-value=0.47  Score=40.23  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      -..|+|||.|--|-.+|..|+..|-+|++.|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3569999999999999999999999999999975

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.33  E-value=0.85  Score=36.40  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             cccEEEECCCh-----------hHHHHHHHHhhCCCeEEEeccCCC
Q 009226           22 AFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        22 ~~DVIIIGaGl-----------~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ...|+|||+|.           ++..|+.+|.+.|++|.++..|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            35799999994           788999999999999999999874

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=1.3  Score=35.37  Aligned_cols=54  Identities=13%  Similarity=-0.009  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCc-EEEEEeCCCc------EEEcCEEEEC
Q 009226          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLASGQ------DILSHKLVLD  333 (539)
Q Consensus       279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~-~~gV~l~~G~------~i~Ad~VI~~  333 (539)
                      .++.+.+.+..+..|.++++|+.|++|..+. +|. +..+..+.|+      .+.||.||+.
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a  123 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVDCLLWA  123 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCCEEEEE
Confidence            5788999999999999999999999998763 332 2223334443      4578888853

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.67  E-value=0.46  Score=40.60  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      .|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            69999999999999999998996 799999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.67  E-value=0.68  Score=38.60  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      ..|.|||+|..|.++|..|.+.+. ++.++|.++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            479999999999999999998885 688899765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.64  E-value=0.47  Score=41.40  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~   55 (539)
                      .|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            78999999999998888876665 788988764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.57  E-value=0.8  Score=36.97  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=31.7

Q ss_pred             CcccEEEECCCh-----------hHHHHHHHHhhCCCeEEEeccCCC
Q 009226           21 TAFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        21 ~~~DVIIIGaGl-----------~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      ....|+|||+|.           ++..|+.+|.+.|++|.++..|+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            446799999996           788999999999999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=81.54  E-value=0.65  Score=39.65  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~   56 (539)
                      .|+|+|+|.-|+.++..+...|. +|.+.|.++.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            59999999999999999999997 6888898763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.47  E-value=0.6  Score=38.39  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (539)
Q Consensus        24 DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~   55 (539)
                      .|.|||+|-.|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            58999999999999999998874  799999774

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.01  E-value=0.78  Score=43.47  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             cccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           22 AFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        22 ~~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      .+.|+|.| +|+-|..++..|.++|++|+++|++.
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            35699998 89999999999999999999998653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=80.74  E-value=0.75  Score=42.00  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (539)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~~   56 (539)
                      -.|+|+|| |..|...+.+|.++|++|.++.|+..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            35999995 99999999999999999999988643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.41  E-value=0.93  Score=40.65  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=39.0

Q ss_pred             CCCCCCCCcccEEEECCCh-hHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009226           14 PYPPIEPTAFDLIVIGTGL-PESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (539)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl-~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~   65 (539)
                      +.|+|..+  -++|.||+= -|..+|..|++.|.+|.+.+++..-+.....+.
T Consensus         1 ~~psl~gK--~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~   51 (237)
T d1uzma1           1 AKPPFVSR--SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVE   51 (237)
T ss_dssp             CCCCCCCC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEE
T ss_pred             CCCCCCCC--EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEE
Confidence            35677664  377777764 789999999999999999999987776655544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.30  E-value=0.92  Score=39.11  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=30.7

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (539)
Q Consensus        21 ~~~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~   55 (539)
                      +..-|+|.| +|-.|..+|..|++.|.+|.+++|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            345688888 68999999999999999999999975