Citrus Sinensis ID: 009227

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MSTSSSSPSSDEELIFNPNPIPKPIDDELTLASLTLTESNGNGSVGESDRYGGAGVVLEAEREGEREGPSSPSSSGYAGERGSSSEGTSNSRIGDEDDDGIQEVINDHDGFVDGVGDSSPSPSWVPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICLT
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHcccEEEEEccccccEEEcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEEccEEEEEEccccccHHHHHHHHHHHHccEEEEEcHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccEEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccEEEEEccEEEEEEc
cccccccccccHHccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccEEEEEEcccccEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHccHHHccccccccccccccccccEEEEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEcccccccccEEEEEEcccccEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEEEEEEc
mstsssspssdeelifnpnpipkpiddelTLASLTltesngngsvgesdryggagVVLEaeregeregpsspsssgyagergsssegtsnsrigdedddgiqevindhdgfvdgvgdsspspswvpgkrhvdeddasiswrkRKKHFFIlshsgkpiysrygdehklaGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCIscteepyesLRGQLELLYGQMILILTKSINrcfeknpkfdmtpllggtdVVFSSLihsfnwnpatflhaytclplAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVgaqkaslhpddmlLLSNFvmssesfrtsesfspiclprynptAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMleggmrvedlpvdplprssmphrlsqqriltqspeifsesivgiggptgLWHFIYRSIYldqyvssdfsppisspqqQKRLYRAYQKLYCSmhdkgigphktqfrrdenygsYLFVFIIICLT
mstsssspssdeelifnpnpipkPIDDELTLASLTLTesngngsvgesdrYGGAGVVLEAeregeregpsspsssgyagergsssegtsnsrigdEDDDGIQEVINDHDGFVDGVGDsspspswvpgkrhvdeddasiswrkrkkhffilshsgkpiySRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRsmleggmrvedlpvDPLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICLT
MstsssspssDEELIFNPNPIPKPIDDeltlasltltesNGNGSVGESDRYggagvvleaeregeregpsspsssgYAGERGSSSEGTSNSRIGDEDDDGIQEVINDHDGFVDGVGDSSPSPSWVPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMssesfrtsesfsPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICLT
*****************************************************************************************************************************************ISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEV**************************************EIFSESIVGIGGPTGLWHFIYRSIYLDQYVSS*************RLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICL*
********************************************************************************************************************************************RKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSS**********************VGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICLT
*************LIFNPNPIPKPIDDELTLASLTLTESNGNGSVGESDRYGGAGVVLE*********************************IGDEDDDGIQEVINDHDGFVDGVGDSSPSPSWVPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSS********FSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDF**********KRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICLT
**************************************************************************************************************************************DASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLP*******************TQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICLT
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MSTSSSSPSSDEELIFNPNPIPKPIDDELTLASLTLTESNGNGSVGESDRYGGAGVVLEAEREGEREGPSSPSSSGYAGERGSSSEGTSNSRIGDEDDDGIQEVINDHDGFVDGVGDSSPSPSWVPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGSYLFVFIIICLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query539 2.2.26 [Sep-21-2011]
Q86VX9555 Vacuolar fusion protein M no no 0.647 0.628 0.307 2e-54
Q95KG9555 Vacuolar fusion protein M N/A no 0.647 0.628 0.307 4e-54
Q9YGN1520 Protein SAND OS=Takifugu N/A no 0.647 0.671 0.310 8e-54
Q6PDG8556 Vacuolar fusion protein M yes no 0.647 0.627 0.307 1e-53
Q17QV2555 Vacuolar fusion protein M yes no 0.623 0.605 0.302 7e-52
Q5ZIH2549 Vacuolar fusion protein M yes no 0.769 0.755 0.290 4e-51
Q8BMQ8553 Vacuolar fusion protein M no no 0.634 0.618 0.307 1e-48
Q7L1V2547 Vacuolar fusion protein M no no 0.630 0.621 0.306 3e-48
Q4R4E4547 Vacuolar fusion protein M N/A no 0.632 0.623 0.303 4e-48
Q2ULR1628 Vacuolar fusion protein m yes no 0.640 0.549 0.300 1e-46
>sp|Q86VX9|MON1A_HUMAN Vacuolar fusion protein MON1 homolog A OS=Homo sapiens GN=MON1A PE=1 SV=2 Back     alignment and function desciption
 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 209/387 (54%), Gaps = 38/387 (9%)

Query: 127 GKRHVDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKD 186
           G    DE+DA+ +WR  +KH F+LS +GKP+YSRYG E  L+     + A++SF+E  K+
Sbjct: 138 GTTEGDEEDATEAWRLHQKHVFVLSEAGKPVYSRYGSEEALSSTMGVMVALVSFLEADKN 197

Query: 187 RIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKS-INRCFE 245
            I+ + A  ++VVF+ + P+ LV ++ T +  + L  +L  +Y Q++ +LT + ++  F+
Sbjct: 198 AIRSIHADGYKVVFVRRSPLVLVAVARTRQSAQELAQELLYIYYQILSLLTGAQLSHIFQ 257

Query: 246 KNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSG 305
           +   +D+  LL G++ +  +L+     +P+  + A  CLPLA A R    A LQ      
Sbjct: 258 QKQNYDLRRLLSGSERITDNLLQLMARDPSFLMGAARCLPLAAAVRDTVSASLQQARARS 317

Query: 306 VLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAF 365
           ++F++L+ + ++V+LV  +   LHP D+ LL N + SS SFR  E+++P+CLP++N   F
Sbjct: 318 LVFSILLARNQLVALVRRKDQFLHPIDLHLLFNLISSSSSFREGEAWTPVCLPKFNAAGF 377

Query: 366 LYAYVHYFDADTYLMLLTTSSDA--FYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRV 423
            +A++ Y + DT L LL  S+D   F+ + DCR R ++ L +      ++ ++       
Sbjct: 378 FHAHISYLEPDTDLCLLLVSTDREDFFAVSDCRRRFQERLRKRGAHLALREAL------- 430

Query: 424 EDLPVDPLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSD 483
                                   ++P  +S + VGI     L HF+Y+S     + S +
Sbjct: 431 ------------------------RTP-YYSVAQVGI---PDLRHFLYKSKSSGLFTSPE 462

Query: 484 FSPPISSPQQQKRLYRAYQKLYCSMHD 510
              P +S ++Q+RL   YQ L+   H+
Sbjct: 463 IEAPYTSEEEQERLLGLYQYLHSRAHN 489
Plays an important in membrane trafficking through the secretory apparatus. Not involved in endocytic trafficking to lysosomes.
Homo sapiens (taxid: 9606)
>sp|Q95KG9|MON1A_MACFA Vacuolar fusion protein MON1 homolog A OS=Macaca fascicularis GN=MON1A PE=2 SV=2 Back     alignment and function description
>sp|Q9YGN1|SAND_TAKRU Protein SAND OS=Takifugu rubripes GN=sand PE=3 SV=1 Back     alignment and function description
>sp|Q6PDG8|MON1A_MOUSE Vacuolar fusion protein MON1 homolog A OS=Mus musculus GN=Mon1a PE=1 SV=3 Back     alignment and function description
>sp|Q17QV2|MON1A_BOVIN Vacuolar fusion protein MON1 homolog A OS=Bos taurus GN=MON1A PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIH2|MON1A_CHICK Vacuolar fusion protein MON1 homolog A OS=Gallus gallus GN=MON1A PE=2 SV=1 Back     alignment and function description
>sp|Q8BMQ8|MON1B_MOUSE Vacuolar fusion protein MON1 homolog B OS=Mus musculus GN=Mon1b PE=2 SV=1 Back     alignment and function description
>sp|Q7L1V2|MON1B_HUMAN Vacuolar fusion protein MON1 homolog B OS=Homo sapiens GN=MON1B PE=1 SV=1 Back     alignment and function description
>sp|Q4R4E4|MON1B_MACFA Vacuolar fusion protein MON1 homolog B OS=Macaca fascicularis GN=MON1B PE=2 SV=1 Back     alignment and function description
>sp|Q2ULR1|MON1_ASPOR Vacuolar fusion protein mon1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=mon1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
225435323615 PREDICTED: vacuolar fusion protein MON1 0.936 0.821 0.748 0.0
356543452542 PREDICTED: vacuolar fusion protein MON1 0.812 0.808 0.799 0.0
343172238496 SAND family protein, partial [Silene lat 0.833 0.905 0.793 0.0
449443365626 PREDICTED: vacuolar fusion protein MON1 0.883 0.760 0.780 0.0
449499753626 PREDICTED: vacuolar fusion protein MON1 0.920 0.792 0.752 0.0
343172240496 SAND family protein, partial [Silene lat 0.833 0.905 0.786 0.0
356547180548 PREDICTED: vacuolar fusion protein MON1 0.812 0.799 0.793 0.0
297822433618 sand family protein [Arabidopsis lyrata 0.903 0.788 0.689 0.0
224106734591 predicted protein [Populus trichocarpa] 0.884 0.807 0.689 0.0
18401727607 SAND family protein [Arabidopsis thalian 0.920 0.817 0.658 0.0
>gi|225435323|ref|XP_002285170.1| PREDICTED: vacuolar fusion protein MON1 homolog A [Vitis vinifera] gi|297746260|emb|CBI16316.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/548 (74%), Positives = 446/548 (81%), Gaps = 43/548 (7%)

Query: 17  NPNPIPKPIDD-ELTLASLTLTESNG---------------NGSVGE-------SDRYGG 53
           NP+P  KP+D  +  LAS+ LTE NG               NGS  E       +++  G
Sbjct: 20  NPSPTAKPLDSLQDRLASIALTEPNGGAESPSDQEPQAGVANGSFSEEIQEVVQNNQAAG 79

Query: 54  A-------------GVVLEAEREGEREGPSSPSSSGYAGERGSSSEGTSNSRIGDEDDDG 100
           +             GVV     E E + PSSPSSSGYAGERGSSS  TS S IG+  +D 
Sbjct: 80  SEAVVEEVSESFTHGVVWRDNSEHEVDAPSSPSSSGYAGERGSSS-ATSESGIGEGGEDE 138

Query: 101 IQEVINDHDGFVDGVGDSSPSPSWVPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSR 160
           I EV ND    VDGV D   S  WVPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSR
Sbjct: 139 ILEVRNDDS--VDGVSDLQQS--WVPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSR 194

Query: 161 YGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYES 220
           YGDEHKLAGFSATLQAIISFVENG DR++L+RAGKHQVVFL+KGPIYLVCISCTEEPYES
Sbjct: 195 YGDEHKLAGFSATLQAIISFVENGGDRVQLIRAGKHQVVFLVKGPIYLVCISCTEEPYES 254

Query: 221 LRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHA 280
           LR QLEL+YGQM+LILTKS+NRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHA
Sbjct: 255 LRSQLELIYGQMLLILTKSVNRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHA 314

Query: 281 YTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFV 340
           YTCLPLAYATRQA+GA+LQDVADSGVLFA+LMCK KV+SLVGAQKASLHPDDMLLLSNFV
Sbjct: 315 YTCLPLAYATRQASGAILQDVADSGVLFAILMCKHKVISLVGAQKASLHPDDMLLLSNFV 374

Query: 341 MSSESFRTSESFSPICLPRYNPTAFLYAYVHYFDADTYLMLLTTSSDAFYHLKDCRIRIE 400
           MSSESFRTSESFSPICLPRYNP AFLYAYVHY D DTYLMLLTT SDAFYHLKDCR+RIE
Sbjct: 375 MSSESFRTSESFSPICLPRYNPMAFLYAYVHYLDVDTYLMLLTTKSDAFYHLKDCRLRIE 434

Query: 401 QVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSS-MPHRLSQQRILTQSPEIFSESIVG 459
            VLL+SNVLSEVQRS+L+GGMRVEDLPVD  PRS  +   L Q ++ T SPE   E  +G
Sbjct: 435 TVLLKSNVLSEVQRSLLDGGMRVEDLPVDTSPRSGILSAHLGQHKLPTDSPETSREECIG 494

Query: 460 IGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIG-PHKT 518
           +GGP GLWHFIYRSIYLDQYVSS+FSPPI+S +QQKRLYRAYQKLY SMHD+G+G PHKT
Sbjct: 495 VGGPFGLWHFIYRSIYLDQYVSSEFSPPINSSRQQKRLYRAYQKLYASMHDRGVGPPHKT 554

Query: 519 QFRRDENY 526
           QFRRDENY
Sbjct: 555 QFRRDENY 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356543452|ref|XP_003540174.1| PREDICTED: vacuolar fusion protein MON1 homolog A-like [Glycine max] Back     alignment and taxonomy information
>gi|343172238|gb|AEL98823.1| SAND family protein, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|449443365|ref|XP_004139448.1| PREDICTED: vacuolar fusion protein MON1 homolog A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449499753|ref|XP_004160906.1| PREDICTED: vacuolar fusion protein MON1 homolog A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|343172240|gb|AEL98824.1| SAND family protein, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|356547180|ref|XP_003541994.1| PREDICTED: vacuolar fusion protein MON1 homolog A-like [Glycine max] Back     alignment and taxonomy information
>gi|297822433|ref|XP_002879099.1| sand family protein [Arabidopsis lyrata subsp. lyrata] gi|297324938|gb|EFH55358.1| sand family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224106734|ref|XP_002314266.1| predicted protein [Populus trichocarpa] gi|222850674|gb|EEE88221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18401727|ref|NP_029426.1| SAND family protein [Arabidopsis thaliana] gi|15983791|gb|AAL10492.1| At2g28390/T1B3.9 [Arabidopsis thaliana] gi|20197735|gb|AAD20687.2| expressed protein [Arabidopsis thaliana] gi|22137018|gb|AAM91354.1| At2g28390/T1B3.9 [Arabidopsis thaliana] gi|26451129|dbj|BAC42668.1| unknown protein [Arabidopsis thaliana] gi|51969292|dbj|BAD43338.1| unnamed protein product [Arabidopsis thaliana] gi|51969540|dbj|BAD43462.1| unnamed protein product [Arabidopsis thaliana] gi|51970270|dbj|BAD43827.1| unnamed protein product [Arabidopsis thaliana] gi|51970450|dbj|BAD43917.1| unnamed protein product [Arabidopsis thaliana] gi|62319772|dbj|BAD93763.1| hypothetical protein [Arabidopsis thaliana] gi|330253021|gb|AEC08115.1| SAND family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
TAIR|locus:2057552607 AT2G28390 [Arabidopsis thalian 0.808 0.718 0.717 2e-173
UNIPROTKB|Q86VX9555 MON1A "Vacuolar fusion protein 0.513 0.499 0.332 2e-51
UNIPROTKB|Q17QV2555 MON1A "Vacuolar fusion protein 0.504 0.490 0.330 2.6e-51
UNIPROTKB|F1Q3A6555 MON1A "Uncharacterized protein 0.504 0.490 0.334 2.6e-51
DICTYBASE|DDB_G0281773478 mon1 "DUF254 family protein" [ 0.614 0.692 0.339 5.1e-51
MGI|MGI:1920075556 Mon1a "MON1 homolog A (yeast)" 0.513 0.498 0.328 5.4e-51
UNIPROTKB|I3LLG1555 MON1A "Uncharacterized protein 0.504 0.490 0.330 1.1e-50
RGD|1308823555 Mon1a "MON1 homolog A (yeast)" 0.508 0.493 0.330 1.4e-50
ZFIN|ZDB-GENE-070615-6525 mon1a "MON1 homolog A (yeast)" 0.614 0.630 0.298 4.7e-50
UNIPROTKB|F1NBQ4502 MON1A "Vacuolar fusion protein 0.580 0.623 0.298 3.3e-49
TAIR|locus:2057552 AT2G28390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1669 (592.6 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
 Identities = 323/450 (71%), Positives = 366/450 (81%)

Query:    77 YAGERGSSSEGTSNSRIGDEDDDGIQEVINDHDGFVDGVGDSSPSPSWVPGKRHVDEDDA 136
             Y GERGSS   TS  +  D  +D I+E  N     VDG   S    +W+PGKRHVDEDDA
Sbjct:   119 YDGERGSSGGATSTYKADDGSEDEIREA-N-----VDGDTASQHEAAWLPGKRHVDEDDA 172

Query:   137 SISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKH 196
             S SWRKRKKHFFILS+SGKPIYSRYGDEHKLAGFSATLQAIISFVENG DR+ LV+AG H
Sbjct:   173 STSWRKRKKHFFILSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDRVNLVKAGNH 232

Query:   197 QVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLL 256
             QVVFL+KGPIYLVCISCT+E YE LRGQL+LLYGQMILILTKSI+RCFEKN KFDMTPLL
Sbjct:   233 QVVFLVKGPIYLVCISCTDETYEYLRGQLDLLYGQMILILTKSIDRCFEKNAKFDMTPLL 292

Query:   257 GGTDVVFSSLIHSFNWNPATFLHAYTCLPLAYATRQAAGAVLQDVADSGVLFALLMCKCK 316
             GGTD VFSSL+HSF+WNPATFLHAYTCLPL YA RQA G +LQ+V  SGVLF+LLMC+ K
Sbjct:   293 GGTDAVFSSLVHSFSWNPATFLHAYTCLPLPYALRQATGTILQEVCASGVLFSLLMCRHK 352

Query:   317 VVSLVGAQKASLHPDDMLLLSNFVMXXXXXXXXXXXXPICLPRYNPTAFLYAYVHYFDAD 376
             VVSL GAQKASLHPDD+LLLSNFVM            PICLPRYN  AFL+AYVH+FD D
Sbjct:   353 VVSLAGAQKASLHPDDLLLLSNFVMSSESFRTSESFSPICLPRYNAQAFLHAYVHFFDDD 412

Query:   377 TYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSM 436
             TY++LLTT SDAF+HLKDCR+R+E VLL+SN+LS VQRS+ EGGMRVED+P+D   RSS 
Sbjct:   413 TYVILLTTRSDAFHHLKDCRVRLEAVLLKSNILSVVQRSIAEGGMRVEDVPIDRRRRSST 472

Query:   437 PHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKR 496
              ++  Q    +  P+I     VG GGP GLWHF+YRSIYLDQY+SS+FSPP++S +QQK 
Sbjct:   473 TNQ-EQD---SPGPDIS----VGTGGPFGLWHFMYRSIYLDQYISSEFSPPVTSHRQQKS 524

Query:   497 LYRAYQKLYCSMHDKGIGPHKTQFRRDENY 526
             LYRAYQKLY SMH KG+GPHKTQ+RRDENY
Sbjct:   525 LYRAYQKLYASMHVKGLGPHKTQYRRDENY 554
GO:0005634 "nucleus" evidence=ISM
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006882 "cellular zinc ion homeostasis" evidence=RCA
GO:0009624 "response to nematode" evidence=RCA
UNIPROTKB|Q86VX9 MON1A "Vacuolar fusion protein MON1 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QV2 MON1A "Vacuolar fusion protein MON1 homolog A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3A6 MON1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281773 mon1 "DUF254 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1920075 Mon1a "MON1 homolog A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLG1 MON1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1308823 Mon1a "MON1 homolog A (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070615-6 mon1a "MON1 homolog A (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBQ4 MON1A "Vacuolar fusion protein MON1 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
pfam03164413 pfam03164, Mon1, Trafficking protein Mon1 3e-84
>gnl|CDD|217396 pfam03164, Mon1, Trafficking protein Mon1 Back     alignment and domain information 
 Score =  266 bits (683), Expect = 3e-84
 Identities = 136/382 (35%), Positives = 209/382 (54%), Gaps = 38/382 (9%)

Query: 134 DDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRA 193
           D  S +WR +KKH FILS +GKPIYS YG E  L+     +QA++SFV++  D I+ + A
Sbjct: 1   DLISEAWRLQKKHVFILSEAGKPIYSNYGSEEALSSTVGVMQALVSFVQSDGDAIRSIHA 60

Query: 194 GKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMILILTKS-INRCFEKNPKFDM 252
             +++VFL K P+ LV +S T +    L  +L  LY Q++ ILT S + R F+K   +D+
Sbjct: 61  DGNKIVFLQKSPLILVAVSRTTQSAAELLQELLYLYYQILSILTASQLQRIFQKKQNYDL 120

Query: 253 TPLLGGTDVVFSSLIHSFNWNPATFL-HAYTCLPLAYATRQAAGAVLQDVADSGVLFALL 311
             LL G++ +  +L+ S N +P   L +A  CLPL  + R    ++LQ     G+LF++L
Sbjct: 121 RRLLSGSERLLDNLLDSLNRDPLVLLLNAIRCLPLNSSVRDQLSSLLQRAKAKGLLFSIL 180

Query: 312 MCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYVH 371
           + + ++V+LV A+K  LHP D+ LL N V SS SFR+ E++ PICLP++NP  F YAY+ 
Sbjct: 181 IARNRLVALVRAKKYLLHPADLHLLFNLVSSSSSFRSGENWVPICLPKFNPDGFFYAYIS 240

Query: 372 YF--DADTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVD 429
           Y   D D  L+LL+T  DAF+ LK  + ++ + L +   L  +  ++             
Sbjct: 241 YLCNDEDVCLLLLSTDRDAFFALKSVKQKVAEKLEKRGALEALIEAL------------- 287

Query: 430 PLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPIS 489
                  P R S  ++                G   L HF+Y+S    Q+ S +F  P  
Sbjct: 288 -----KTPPRYSVSQV----------------GIPELRHFLYKSKSSGQFTSPEFEAPYP 326

Query: 490 SPQQQKRLYRAYQKLYCSMHDK 511
           S ++++RL   YQ L+  +H K
Sbjct: 327 SEEERERLSALYQSLHSRLHHK 348

Members of this family have been called SAND proteins although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes. describes orthologues in Fugu rubripes. Length = 413

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 539
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 100.0
KOG0997523 consensus Uncharacterized conserved protein Sand [ 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 96.35
PF08217 604 DUF1712: Fungal domain of unknown function (DUF171 95.0
KOG0937424 consensus Adaptor complexes medium subunit family 82.11
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information 
Probab=100.00  E-value=4.6e-109  Score=875.66  Aligned_cols=365  Identities=46%  Similarity=0.760  Sum_probs=347.4

Q ss_pred             ccchhHHccCceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCC
Q 009227          135 DASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCT  214 (539)
Q Consensus       135 ~~~~~w~~~~KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~  214 (539)
                      +.+++|++|+|||||||+||||||||||||++++++||+||||||||++++|+|++|.+|+++|||+.|+||||||||++
T Consensus         2 ~~~~~~~~~~kh~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~   81 (415)
T PF03164_consen    2 VHSEEWRKHKKHFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKT   81 (415)
T ss_pred             cchHHHHhcCCeEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhH-HHHHHhhhCCCCCcccCCCChHHHHHHHHHhcCCCh-hhhhcccccccCChhHHH
Q 009227          215 EEPYESLRGQLELLYGQMILILTK-SINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNP-ATFLHAYTCLPLAYATRQ  292 (539)
Q Consensus       215 ~Es~~~Lr~QL~~Ly~QIlSiLT~-sl~riF~krpNyDLRrLL~Gtd~~l~~Li~~~~~~p-~~lL~a~~cLpL~~s~R~  292 (539)
                      +|++++|++||+|||.||+|+||. +|+|+|++||||||||+|+|||+++++++++++++| +++++|++||||+++.|+
T Consensus        82 ~e~~~~l~~qL~~ly~qils~lt~~~l~~~f~~r~n~DlR~lL~gtd~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~R~  161 (415)
T PF03164_consen   82 GESESQLRKQLDYLYSQILSILTKPQLERIFEKRPNFDLRRLLGGTDRFLDSLLDSMNRSPPSFLLNALECLPLRPSIRD  161 (415)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhccHHHHHHHhccCCCcchhhhccchHHHHHHHHHHhcCChHHHHhhcceEEECCHHHHH
Confidence            999999999999999999999997 899999999999999999999999999999999998 889999999999999999


Q ss_pred             HHHHHhhh--ccCCCeEEEEEeeCCeEEEeeccCCCcCCcccHHHHHHHhccccccCCCCcccccccCCCCCCceEEEEE
Q 009227          293 AAGAVLQD--VADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYV  370 (539)
Q Consensus       293 ~i~~iL~~--~~~~~lLfglL~a~~kLVs~vrpK~~sLhp~DL~LL~N~V~ss~Sfk~~EsW~PICLP~FN~~GFLyaYV  370 (539)
                      +|+++|.+  .+.+++|||+|+++||||+++|||+|+|||.||+||+|+|.++.+++++|+|+|||||+||++|||||||
T Consensus       162 ~i~~~l~~~~~~~~~llf~lL~~~~klv~~~~~k~~~L~~~Dl~lL~n~v~~~~~~~~~E~W~PICLP~FN~~GFLyayv  241 (415)
T PF03164_consen  162 KITSILLSCLNKRKDLLFGLLFANNKLVSVVRPKKHSLHPSDLHLLFNLVRSSSSFKSGESWIPICLPKFNPNGFLYAYV  241 (415)
T ss_pred             HHHHHHHHhccCCCCcEEEEEEECCEEEEEEccCCCcCChHHHHHHHHHHhhccccCCCCceeccCCcccCCCceEEEEe
Confidence            99999998  7889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecC--CeEEEEecCCcchhhHhHHHHHHHHHHHHhcchHHHHHHHHHhCCcccccCCCCCCCCCCCCcccchhhhccC
Q 009227          371 HYFDA--DTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQ  448 (539)
Q Consensus       371 ~fl~~--~~~LVLiSt~~daF~~L~~~r~~I~~~L~~~~~l~~I~~al~~~~~~v~dip~~~~~~s~~~~~~~~~~~~~~  448 (539)
                      +||++  ++||||||+++|+||+|++++++|+++|.+.|++++|.+++..+.                            
T Consensus       242 ~~l~~~~~~~lvLiS~~~~~F~~l~~~~~~i~~~L~~~~~~~~l~~~~~~~~----------------------------  293 (415)
T PF03164_consen  242 SYLDEDSPVCLVLISTDKDAFFELSEAKDRIIDKLEESGCLEALISALSNSS----------------------------  293 (415)
T ss_pred             eeccCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhc----------------------------
Confidence            99999  899999999999999999999999999999999999998886420                            


Q ss_pred             CCccccccccccCCCCceeEEEEeecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEeCCCeeE
Q 009227          449 SPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGS  528 (539)
Q Consensus       449 ~~~~~s~~~~~~~g~~~L~HFvYKsk~~~Q~~spe~~~py~~~~~rkRL~~~Yq~L~~~mh~~~~~p~kl~y~~~~~e~l  528 (539)
                         .|+...   .|.|+|||||||+|+++||+||+|++||.+..+|+||+++||+||++||+.+ +|+|++|++++++++
T Consensus       294 ---~~~~~~---ig~p~L~HFiYKsk~~~Q~~~p~~~~~~~~~~~~~rL~~~Y~~L~~~~h~~~-~~~k~~y~~~~~e~~  366 (415)
T PF03164_consen  294 ---SYSISD---IGIPELRHFIYKSKSNNQFVSPEFSPPYNSPDERKRLFRLYQKLHSSMHSSS-RPLKLIYRWTEKETG  366 (415)
T ss_pred             ---CCCccc---CCCCceEEEEEEecCCCceeCCCCCCCCCChHHHHHHHHHHHHHHHHHhCCC-CCeeEEEEecCCcEE
Confidence               011112   2347999999999999999999999999999999999999999999999964 689999999999999


Q ss_pred             eeeeee
Q 009227          529 YLFVFI  534 (539)
Q Consensus       529 l~WvT~  534 (539)
                      ++|+|.
T Consensus       367 l~w~T~  372 (415)
T PF03164_consen  367 LAWVTS  372 (415)
T ss_pred             EEEEcC
Confidence            999996

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown Back     alignment and domain information
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 73/550 (13%), Positives = 155/550 (28%), Gaps = 190/550 (34%)

Query: 102 QEVINDHDGFVDGVGDSSPSPSWVPGKRHVDE-----DDASISWRKRKKHFFILSHSGKP 156
              +++ D       D    P  +  K  +D      D  S + R     F+ L    + 
Sbjct: 27  DAFVDNFD-----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWTLLSKQEE 77

Query: 157 IYSRY-GDEHKLA-GFSATLQAIISFVENGKDRIKLVRAGKHQVVF-----LIKGPIYLV 209
           +  ++  +  ++   F   L + I   +     +  +   +   ++       K  +   
Sbjct: 78  MVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--- 131

Query: 210 CISCTEEPYESLRGQL-EL-------LYGQM------ILIL----TKSINRCFE------ 245
                 +PY  LR  L EL       + G +       + L    +  +    +      
Sbjct: 132 ---SRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 246 -----KNPKFDMTPLLGGTDVVFSSLIHSFNWNPATFLHAYTCLPLAY-----------A 289
                 +P+  +  L          L++  + N  +     + + L              
Sbjct: 188 NLKNCNSPETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 290 TRQAAGA--VLQDVADSGVL--FALLMCKCKV--------------------VSLVGAQK 325
           ++       VL +V ++     F L    CK+                    +SL     
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 326 ASLHPDDML-LLSNFVMSSESFRTSESFSPICLPR----YNP------TAFL------YA 368
            +L PD++  LL  ++             P  LPR     NP         +      + 
Sbjct: 297 -TLTPDEVKSLLLKYL----------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 369 YVHYFDADTYLMLLTTSSDAFY------HLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMR 422
              + + D    ++ +S +               +      + + +L     S++   + 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-----SLIWFDVI 400

Query: 423 VEDLPVDPLPRSSMPHRLSQQRILTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSS 482
             D          + ++L +  ++ + P+  + SI               SIYL+  V  
Sbjct: 401 KSD------VMVVV-NKLHKYSLVEKQPKESTISI----------P----SIYLELKVKL 439

Query: 483 DFSPPISSPQQQKRLYRAYQ--KLYCSMHDKG-----------IGPHKTQFRRDENYGS- 528
           +     +     + +   Y   K + S  D             IG H       E     
Sbjct: 440 E-----NEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 529 ---YL-FVFI 534
              +L F F+
Sbjct: 494 RMVFLDFRFL 503

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 96.72
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 96.32
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 94.81
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 94.27
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 92.72
2j3t_C145 Trafficking protein particle complex subunit 1, tr 89.41
2hz5_A106 Dynein light chain 2A, cytoplasmic; DNLC2A, transp 86.85
3l7h_A97 RE64145P, roadblock; LC7, KM23, dynein, light chai 82.47
3cue_C159 Transport protein particle 18 kDa subunit; membran 81.97
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
Probab=96.72  E-value=0.015  Score=52.44  Aligned_cols=81  Identities=10%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             ceEEEecCCCcceeecCCC---chhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHH
Q 009227          145 KHFFILSHSGKPIYSRYGD---EHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL  221 (539)
Q Consensus       145 KH~FILS~AGKPIYSryGd---E~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L  221 (539)
                      +-+||++..|||+.+||=.   ++.-..+...+...+.  ...+..--.+..+++++|+...+.||+||+++.++++-.+
T Consensus         3 ~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~--~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~   80 (142)
T 2vgl_S            3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT--VRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY   80 (142)
T ss_dssp             EEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH--TCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred             EEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh--cCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence            4689999999999999764   3333333333333333  1122233457789999999999999999999988887654


Q ss_pred             HHHHHHHHH
Q 009227          222 RGQLELLYG  230 (539)
Q Consensus       222 r~QL~~Ly~  230 (539)
                         |++||.
T Consensus        81 ---le~L~~   86 (142)
T 2vgl_S           81 ---LEAIHN   86 (142)
T ss_dssp             ---HHHHHH
T ss_pred             ---HHHHHH
Confidence               555553
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A Back     alignment and structure
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A Back     alignment and structure
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 96.92
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 95.57