Citrus Sinensis ID: 009250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGNK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHHHHHHHHcccccHHHccHHHHHHccccHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccEcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHEEEEEEEEEHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccEEEEEHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mrvatvlhhpvrpvpsyrstlftpspakmktlrfsfshrsTKFKVLAAKKQlpelrsrkqkqdgenllsrdqkaeegfdlgwlpafpHVLIASMSNFLFGYHIGVMNGPIVSIAKelgfegnpileGLVVSIFIAGAFvgsissgsladklgcrrtfqiDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYisevaptkyrgslgtlcqvgTCLGIITslflgipaeddphwWRTMLYIASLPGFILALGMQftvesprwlckggmlnDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELleephsrvAFIGGALFLLQQFAGingvlyfssltfqdvgitDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGatslpldedfshnlsILGTLFYIFTFaigagpvtglvipelssnrtrgkimGFSFSVHWVCNFLVGLFFLDLVEtfgvapvyagfgGVSLLSALFAYYFIVETKGRSLEEIEMSlnanstpgnk
Flexible Loop (DISEMBL)
mrvatvlhhpvrpvpsyrstlftpspaKMKTLRFSFSHRSTKFKVLaakkqlpelrsrkqkqdgenllSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIemslnanstpgnk
Low Complexity Region (SEG)
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGNK
Disordered region (IsUnstruct)
****************************************************************************GFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK********************
Disordered Region (DISOPRED)
***********************************************************************************PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAI********************LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI*************
Disordered Region (DISEMBL)
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELR************SRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSL*********
Disordered Region (DISPRO)
*RVATV*HHPVRPVPSYRSTLFTPSPAKMKTLRF********************************************DLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	539	2.2.26 [Sep-21-2011]
Q0WVE9	524	Probable plastidic glucos	yes	no	0.866	0.891	0.774	0.0
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.818	0.807	0.429	1e-105
Q9FYG3	493	Probable plastidic glucos	no	no	0.894	0.977	0.439	1e-105
Q2V4B9	495	Probable plastidic glucos	no	no	0.868	0.945	0.436	1e-101
C0SPB2	457	Putative metabolite trans	yes	no	0.795	0.938	0.331	3e-54
P46333	461	Probable metabolite trans	no	no	0.777	0.908	0.318	3e-52
O34718	473	Major myo-inositol transp	no	no	0.823	0.938	0.295	1e-47
P15729	468	Glucose transport protein	N/A	no	0.782	0.901	0.304	2e-47
P54723	482	Putative metabolite trans	no	no	0.799	0.894	0.295	8e-46
Q07647	493	Solute carrier family 2,	yes	no	0.820	0.896	0.286	2e-45

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/474 (77%), Positives = 412/474 (86%), Gaps = 7/474 (1%)

Query: 60  QKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGF 119
           +K D ++ +S     +   DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGF
Sbjct: 54  KKPDDDHEISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGF 113

Query: 120 EGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE 179
           EGN ILEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE
Sbjct: 114 EGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDE 173

Query: 180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239
           +L GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDD
Sbjct: 174 ILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDD 233

Query: 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE 299
           PHWWRTMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+
Sbjct: 234 PHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVED 293

Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT 359
           FQ V+K  GS+L+S+W ELL++PHSRVAFIGG+LF+LQQFAGINGVLYFSSLTFQ+VGIT
Sbjct: 294 FQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGIT 353

Query: 360 DGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL 419
            GA ASL VGVTNFAG       ALCASYL+DK+GR+KLLIGSYLGMA+SM L+V A   
Sbjct: 354 SGAQASLYVGVTNFAG-------ALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGF 406

Query: 420 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL 479
           PLDED S +LSILGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWV NFL
Sbjct: 407 PLDEDLSQSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFL 466

Query: 480 VGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 533
           VGLFFLDLVE +GV  VYA FG VSLL+A F++ F VETKGRSLEEIE+SLN+ 
Sbjct: 467 VGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLNSR 520

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/449 (42%), Positives = 296/449 (65%), Gaps = 8/449 (1%)

Query: 86  FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
            P V +A +   LFGYH+GV+NG +  +AK+LG   N +L+G +VS  +AGA VGS + G
Sbjct: 106 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 165

Query: 146 SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV 205
           +LADK G  RTFQ+D IPL +GA + A A S+  M+ GR L G+GIG+++ +VP+YISE+
Sbjct: 166 ALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEI 225

Query: 206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
           +PT+ RG+LG++ Q+  C+GI+ +L  G+P   +P WWRTM  +A +P  +LA+GM F+ 
Sbjct: 226 SPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSP 285

Query: 266 ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325
           ESPRWL + G +++A+  I  L+G+  + + + +      +  S+ ++ W +L    + +
Sbjct: 286 ESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLS-ASGQGSSEPEAGWFDLFSSRYWK 344

Query: 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALC 385
           V  +G ALFL QQ AGIN V+Y+S+  F+  GI     AS LVG +N  G          
Sbjct: 345 VVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFG-------TAV 397

Query: 386 ASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA 445
           AS LMDK GR+ LL+ S+ GMA+SMLL+  + +      +S  L+++GT+ Y+ +F++GA
Sbjct: 398 ASSLMDKMGRKSLLLTSFGGMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGA 457

Query: 446 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSL 505
           GPV  L++PE+ ++R R K +  S  +HW+ NF++GL+FL +V  FG++ VY GF GV +
Sbjct: 458 GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCV 517

Query: 506 LSALFAYYFIVETKGRSLEEIEMSLNANS 534
           L+ L+    +VETKGRSLEEIE++L + +
Sbjct: 518 LAVLYIAGNVVETKGRSLEEIELALTSGA 546

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/496 (43%), Positives = 312/496 (62%), Gaps = 14/496 (2%)

Query: 40  STKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAE-EGFDLGWLPAFPHVLIASMSNFL 98
           S+ +K  +++   P +      +D   LL  D   E E  +  W  + PHVL+A++S+FL
Sbjct: 9   SSMYKRTSSRDYSPMI----DVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFL 64

Query: 99  FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ 158
           FGYH+GV+N P+ SI+ +LGF G+ + EGLVVS+ + GAF+GS+ SG +AD  G RR FQ
Sbjct: 65  FGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQ 124

Query: 159 IDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC 218
           I  +P+ILGA +S  ++SL  ML GRFLVG G+G+   +  +Y++EV+P   RG+ G+  
Sbjct: 125 ICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFI 184

Query: 219 QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLN 278
           Q+ TCLG++ +LF+GIP  +   WWR   +++++P  +LALGM    ESP+WL K G + 
Sbjct: 185 QIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIA 244

Query: 279 DAKAVIANLWGESEINKAIEE-FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQ 337
           +A+A    L G S +  A+ E ++L + K         SELL   HSRV FIG  LF LQ
Sbjct: 245 EAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTLFALQ 304

Query: 338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQK 397
           Q +GIN V YFSS  F+  G+    L ++ VGV+N  G       ++ A  LMDK GR+ 
Sbjct: 305 QLSGINAVFYFSSTVFKSAGVPSD-LGNIFVGVSNLLG-------SVIAMVLMDKVGRKL 356

Query: 398 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELS 457
           LL+ S++GMA +M L VGATS  L    +  LS+ GTL ++ TFA+GAGPV GL++PE+ 
Sbjct: 357 LLLWSFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIF 416

Query: 458 SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 517
            +R R K M F  SVHWV NF VGL FL L+E  G   +Y+ F    L++ +F    ++E
Sbjct: 417 PSRIRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIE 476

Query: 518 TKGRSLEEIEMSLNAN 533
           TKG++L+EIE+SL A 
Sbjct: 477 TKGKTLQEIEISLLAK 492

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/492 (43%), Positives = 302/492 (61%), Gaps = 24/492 (4%)

Query: 56  RSRKQKQDGENLLSRDQKAEE--------GFDLG---WLPAFPHVLIASMSNFLFGYHIG 104
           R   ++   +  LS   KAE         G D G   W  + PHVL+AS+++ LFGYH+G
Sbjct: 14  RHIDKRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLG 73

Query: 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164
           V+N  + SI+ +LGF GN I EGLVVS  + GAF+GS+ SG +AD +G RR FQ+  +P+
Sbjct: 74  VVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPM 133

Query: 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL 224
           I+GA +SA   SL  ML GRFLVG+G+G+   +  +Y++EV+P   RG+ G+  Q+ TC+
Sbjct: 134 IVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCI 193

Query: 225 GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
           G++ SLF GIPA+D+  WWR   +I+++P  +LA+ M+  VESP+WL K G   +A+AV 
Sbjct: 194 GLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVF 253

Query: 285 ANLWGESEINKAIEEFQLVIKKDGSDLDS-QWSELLEEPHSRVAFIGGALFLLQQFAGIN 343
             L G S +  A+ E  LV    G D DS + SELL     RV FIG  LF LQQ +GIN
Sbjct: 254 EKLLGGSYVKAAMAE--LVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGIN 311

Query: 344 GVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSY 403
            V YFSS  F+  G+   A A++ VGV N  G       +  A  LMDK GR+ LLIGS+
Sbjct: 312 AVFYFSSTVFKKAGVPS-ASANICVGVCNLLG-------STVAVVLMDKLGRKVLLIGSF 363

Query: 404 LGMAISM-LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR 462
            GMA+S+ L  +  TSLP     +  LS+ G L ++ +FA GAGPV  L++ E+   R R
Sbjct: 364 AGMAVSLGLQAIAYTSLP-SPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLR 422

Query: 463 GKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRS 522
              +    +VHWV NF VGL FL ++E  G   + A FG   +++ +F    +VETKG+S
Sbjct: 423 ATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKS 482

Query: 523 LEEIEMSLNANS 534
           L+EIE+SL +++
Sbjct: 483 LQEIEISLLSST 494

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  213 bits (542), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 239/449 (53%), Gaps = 20/449 (4%)

Query: 93  SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
           ++   L+GY  GV++G I+ + KELG   N   EGLVVS  + GA +GS ++G L D+ G
Sbjct: 14  ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAILGSGAAGKLTDRFG 71

Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
            ++      +   +G +  A A +   M+  R ++GL +G +T +VP+Y+SE+AP   RG
Sbjct: 72  RKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRG 131

Query: 213 SLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLC 272
           +L +L Q+   +GI+ S  +     D    WR ML +A++P  +L +G+ F  ESPRWL 
Sbjct: 132 ALSSLNQLMITVGILLSYIVNYIFADAEA-WRWMLGLAAVPSLLLLIGILFMPESPRWLF 190

Query: 273 KGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG- 331
             G  + AK ++  L G  +I++ I + +   K+D   L       L +P  R A I G 
Sbjct: 191 TNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE-----LFDPWVRPALIAGL 245

Query: 332 ALFLLQQFAGINGVLYFSSLTFQDVGITDGA--LASLLVGVTNFAGLRSEKYCALCASYL 389
            L  LQQF G N ++Y++  TF +VG  + A  L ++ +G  N           L A  +
Sbjct: 246 GLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNV-------LMTLVAIKI 298

Query: 390 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTL-FYIFTFAIGAGPV 448
           +DK GR+ LL+    GM IS L+V+   +L  D   + + + +  L  +I  FA+  GPV
Sbjct: 299 IDKIGRKPLLLFGNAGMVIS-LIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPV 357

Query: 449 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 508
             +++PEL     RG   G S  +  V   +V L +  L+E  G++ ++  +  + +++ 
Sbjct: 358 VWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAF 417

Query: 509 LFAYYFIVETKGRSLEEIEMSLNANSTPG 537
           LF  + + ETKGRSLEEIE  L   +  G
Sbjct: 418 LFVRFKVTETKGRSLEEIEQDLRDKNGQG 446

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 239/446 (53%), Gaps = 27/446 (6%)

Query: 93  SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
           ++   L+GY  GV++G ++ I  ++      + EGLVVS+ + GA  GS  SG+ +D+ G
Sbjct: 15  ALGGLLYGYDTGVISGALLFINNDIPL--TTLTEGLVVSMLLLGAIFGSALSGTCSDRWG 72

Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
            R+   + +I  I+GA+  A + ++  ++  R ++GL +G +T LVP+Y+SE+APTK RG
Sbjct: 73  RRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132

Query: 213 SLGTLCQVGTCLGIITSL---FLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPR 269
           +LGT+  +    GI+ +    +L  P E     WR M+ +A++P  +L +G+ F  ESPR
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAVLLLIGIAFMPESPR 188

Query: 270 WLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI 329
           WL K G   +A+ ++       +I   + E +   + +    ++    L  +    +  I
Sbjct: 189 WLVKRGSEEEARRIMNITHDPKDIEMELAEMK---QGEAEKKETTLGVLKAKWIRPMLLI 245

Query: 330 GGALFLLQQFAGINGVLYFSSLTFQDVGI--TDGALASLLVGVTNFAGLRSEKYCALCAS 387
           G  L + QQ  GIN V+Y++   F   G+  +  AL ++ +G+ N           + A 
Sbjct: 246 GVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNV-------IMCITAM 298

Query: 388 YLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF---YIFTFAIG 444
            L+D+ GR+KLLI   +G+ +S+  + G     L    S + + +  +F   YI  +   
Sbjct: 299 ILIDRVGRKKLLIWGSVGITLSLAALSGVL---LTLGLSASTAWMTVVFLGVYIVFYQAT 355

Query: 445 AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 504
            GPV  +++PEL  ++ RG   GF+  V    N +V L F  ++   G+A V+  F  + 
Sbjct: 356 WGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVIC 415

Query: 505 LLSALFAYYFIVETKGRSLEEIEMSL 530
           LLS  FA+Y + ETKG+SLEEIE SL
Sbjct: 416 LLSFFFAFYMVPETKGKSLEEIEASL 441

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 221/457 (48%), Gaps = 13/457 (2%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           +L+++    LFGY  GV+NG +  + +      N   EGLV S  + GA +G++  G ++
Sbjct: 15  ILVSTFGGLLFGYDTGVLNGALPYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFGGRMS 74

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
           D  G R+      +   +  I    A ++  M+  RF++G+ +G  +V VP Y++E++P 
Sbjct: 75  DFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPV 134

Query: 209 KYRGSLGTLCQV----GTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264
           + RG + T  ++    G  L  + +  LG    D+ H WR ML IASLP   L  GM   
Sbjct: 135 ESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRM 194

Query: 265 VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324
            ESPRWL   G   DA  V+  +  E      ++E +   KK+     + + +L      
Sbjct: 195 PESPRWLVSKGRKEDALRVLKKIRDEKRAAAELQEIEFAFKKEDQLEKATFKDLSVPWVR 254

Query: 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI-TDGALASLLVGVTNFAGLRSEKYCA 383
           R+ FIG  + ++QQ  G+N ++Y+ +   ++ G  T+ AL      + N A         
Sbjct: 255 RIVFIGLGIAIVQQITGVNSIMYYGTEILRNSGFQTEAAL------IGNIANGVISVLAT 308

Query: 384 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 443
               +L+ + GR+ +L+   +G   ++LL +G  SL L+   +    +L        F  
Sbjct: 309 FVGIWLLGRVGRRPMLMTGLIGTTTALLL-IGIFSLVLEGSPALPYVVLSLTVTFLAFQQ 367

Query: 444 GA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGG 502
           GA  PVT L++ E+   R RG  MG +    W+ NF V   F  L+   G++  +  F G
Sbjct: 368 GAISPVTWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVG 427

Query: 503 VSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGNK 539
           + + S LF   F+ ETKG SLE++E +  A    G K
Sbjct: 428 LGICSVLFVKRFLPETKGLSLEQLEENFRAYDHSGAK 464

Major myo-inositol uptake transporter.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P15729|GLCP_SYNY3 Glucose transport protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gtr PE=3 SV=2

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 241/460 (52%), Gaps = 38/460 (8%)

Query: 91  IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK 150
           +A++  FLFG+   V+NG + ++ K   F+ + +L GL VS+ + G+ +G+  +G +AD+
Sbjct: 23  VAALGGFLFGFDTAVINGAVAALQKH--FQTDSLLTGLSVSLALLGSALGAFGAGPIADR 80

Query: 151 LGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY 210
            G  +T  +  +   L +I S    ++ + ++ R L G+G+G  +V+ P YI+EV+P   
Sbjct: 81  HGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRVLGGIGVGAASVIAPAYIAEVSPAHL 140

Query: 211 RGSLGTLCQVGTCLGIITSL----FLGIPAEDDPH--W------WRTMLYIASLPGFILA 258
           RG LG+L Q+    GI  +L    F+ + A       W      WR M +   +P  +  
Sbjct: 141 RGRLGSLQQLAIVSGIFIALLSNWFIALMAGGSAQNPWLFGAAAWRWMFWTELIPALLYG 200

Query: 259 LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDG----SDLDSQ 314
           +      ESPR+L   G    A A++  + G  ++   IEE Q  +  D     SDL S+
Sbjct: 201 VCAFLIPESPRYLVAQGQGEKAAAILWKVEG-GDVPSRIEEIQATVSLDHKPRFSDLLSR 259

Query: 315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGV-TNF 373
              LL      + +IG  L  LQQF GIN + Y+SS+ ++ VG T+    SLL+ V T F
Sbjct: 260 RGGLLP-----IVWIGMGLSALQQFVGINVIFYYSSVLWRSVGFTEE--KSLLITVITGF 312

Query: 374 AGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISM--LLVV--GATSL---PLDEDFS 426
             + +     L A   +DK GR+ LL+   +GM I++  L VV  GAT +   P     +
Sbjct: 313 INILTT----LVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAA 368

Query: 427 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 486
             ++++    Y+F+F    GP+  +++ E+ +N+ R   +  +  V W+ NF++   F  
Sbjct: 369 GIIALVTANLYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPP 428

Query: 487 LVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 526
           L++T G+ P Y  +   + +S  F ++F+ ETKG++LE++
Sbjct: 429 LLDTVGLGPAYGLYATSAAISIFFIWFFVKETKGKTLEQM 468

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P54723|YFIG_BACSU Putative metabolite transport protein YfiG OS=Bacillus subtilis (strain 168) GN=yfiG PE=3 SV=1

 Score =  185 bits (469), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 226/450 (50%), Gaps = 19/450 (4%)

Query: 90  LIASMSNFLFGYHIGVMNG--PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
           L+++    LFGY  GV+NG  P ++ A +L     P+ EGLV S  + GA  G++  G L
Sbjct: 26  LVSTFGGLLFGYDTGVINGALPFMATAGQLNL--TPVTEGLVASSLLLGAAFGAMFGGRL 83

Query: 148 ADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP 207
           +D+ G R+T     +  I   +    + +   M+  RFL+GL +G  +V VP +++E++P
Sbjct: 84  SDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISP 143

Query: 208 TKYRGSLGT----LCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
            + RG + T    +  +G  L    +  +G    +  + WR ML IA+LP  +L  GM  
Sbjct: 144 AERRGRIVTQNELMIVIGQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFGMLI 203

Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323
             ESPRWL   G + DA  V+  +  +S+  + I+E +  I  +G+   + + +  E   
Sbjct: 204 VPESPRWLAAKGRMGDALRVLRQIREDSQAQQEIKEIKHAI--EGTAKKAGFHDFQEPWI 261

Query: 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI-TDGALASLLVGVTNFAGLRSEKYC 382
            R+ FIG  + ++QQ  G+N ++Y+ +   ++ G  T+ AL      + N A        
Sbjct: 262 RRILFIGIGIAIVQQITGVNSIMYYGTEILREAGFQTEAAL------IGNIANGVISVIA 315

Query: 383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA 442
            +   +L+ K  R+ +LI   +G  ++ LL++G  S+ L+   +    +L        F 
Sbjct: 316 VIFGIWLLGKVRRRPMLIIGQIG-TMTALLLIGILSIVLEGTPALPYVVLSLTILFLAFQ 374

Query: 443 IGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG 501
             A   VT L++ E+     RG  MG S    W  NFL+G  F  L+   G++  +  F 
Sbjct: 375 QTAISTVTWLMLSEIFPMHVRGLGMGISTFCLWTANFLIGFTFPILLNHIGMSATFFIFV 434

Query: 502 GVSLLSALFAYYFIVETKGRSLEEIEMSLN 531
            +++L+ LF   ++ ETKGRSLE++E S  
Sbjct: 435 AMNILAILFVKKYVPETKGRSLEQLEHSFR 464

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q07647|GTR3_RAT Solute carrier family 2, facilitated glucose transporter member 3 OS=Rattus norvegicus GN=Slc2a3 PE=1 SV=1

 Score =  184 bits (467), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 224/468 (47%), Gaps = 26/468 (5%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILE------------GLVVSIFIAG 136
           V +A++ +F FGY+ GV+N P   I   L +     LE             L V+IF  G
Sbjct: 14  VTVATIGSFQFGYNTGVINAPETIIKDFLNYTLEERLEDLPREGLLTTLWSLCVAIFSVG 73

Query: 137 AFVGSISSGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGV 193
             +GS S G   ++ G R +  +  +  ILG  +   +  A S++ ++ GR ++G+  G+
Sbjct: 74  GMIGSFSVGLFVNRFGRRNSMLLVNLIAILGGCLMGFAKIAESVEMLILGRLIIGIFCGL 133

Query: 194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP-AEDDPHWWRTMLYIASL 252
            T  VP+YI EV+PT  RG+ GTL Q+G  +GI+ +   G+         W  +L +  +
Sbjct: 134 CTGFVPMYIGEVSPTALRGAFGTLNQLGIVVGILVAQVFGLDFILGSEELWPGLLGLTII 193

Query: 253 PGFILALGMQFTVESPRWLCKGGMLND-AKAVIANLWGESEINKAIEEFQLVIKKDGSDL 311
           P  + +  + F  ESPR+L       D A  ++  LWG  ++ + I+E +    +   + 
Sbjct: 194 PAILQSAALPFCPESPRFLLINRKEEDQATEILQRLWGTPDVIQEIQEMKDESIRMSQEK 253

Query: 312 DSQWSELLEEP-HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGV 370
                EL + P + +   I   L L QQF+GIN V Y+S+  FQD G+ +   A++  GV
Sbjct: 254 QVTVLELFKSPSYFQPLLISVVLQLSQQFSGINAVFYYSTGIFQDAGVQEPIYATIGAGV 313

Query: 371 TNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 430
            N           + + +L+++ GR+ L +    GMA+  + +  +  L  + +    + 
Sbjct: 314 VN-------TIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMTISLLLKDEYEAMSFVC 366

Query: 431 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 490
           I+  L Y+  F IG GP+   ++ EL S   R   M  +   +W  NFLVG+FF      
Sbjct: 367 IVAILVYVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGMFFPSAAAY 426

Query: 491 FGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGN 538
            G A V+  F    +   +F  + + ETKGR+ E+I  +    +  G 
Sbjct: 427 LG-AYVFIIFAAFLVFFLIFTSFKVPETKGRTFEDITRAFEGQAHSGK 473

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
297739205	537	unnamed protein product [Vitis vinifera]	0.972	0.975	0.762	0.0
225447125	546	PREDICTED: probable plastidic glucose tr	0.975	0.963	0.753	0.0
224136954	518	predicted protein [Populus trichocarpa]	0.957	0.996	0.735	0.0
297848760	521	hypothetical protein ARALYDRAFT_470494 [	0.940	0.973	0.743	0.0
449463102	540	PREDICTED: probable plastidic glucose tr	0.979	0.977	0.704	0.0
449505434	540	PREDICTED: probable plastidic glucose tr	0.979	0.977	0.702	0.0
310877902	439	putative monosaccharide transporter [Vit	0.803	0.986	0.831	0.0
357462225	556	hypothetical protein MTR_3g080240 [Medic	0.938	0.910	0.702	0.0
356547853	515	PREDICTED: probable plastidic glucose tr	0.933	0.976	0.712	0.0
42561706	524	putative plastidic glucose transporter 1	0.866	0.891	0.774	0.0

>gi|297739205|emb|CBI28856.3| unnamed protein product [Vitis vinifera]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/540 (76%), Positives = 456/540 (84%), Gaps = 16/540 (2%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
           M  AT++H P+  VP   S    P         +K K  RF F  RS K +V AAK+QLP
Sbjct: 1   MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60

Query: 54  ELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSI 113
           EL +  QK   + + + ++  +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+
Sbjct: 61  ELHA--QKPGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSV 118

Query: 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ 173
           A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLILGA+ISAQ
Sbjct: 119 ARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLILGALISAQ 178

Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
           AHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFLG
Sbjct: 179 AHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIVSLFLG 238

Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI 293
           IP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +LWG SE+
Sbjct: 239 IPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRSLWGVSEV 298

Query: 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTF 353
           ++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIGG LF LQQFAGINGVLYFSSLTF
Sbjct: 299 DRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVLYFSSLTF 358

Query: 354 QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLV 413
           QDVGIT GALASL VGVTNFAG       ALCA YLMD++GRQ+LLIGSYLGMA+SM L+
Sbjct: 359 QDVGITSGALASLFVGVTNFAG-------ALCALYLMDRQGRQRLLIGSYLGMAVSMFLI 411

Query: 414 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH 473
           V A   P+DE   HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +TRGKIMGFSFSVH
Sbjct: 412 VYAIISPVDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQTRGKIMGFSFSVH 471

Query: 474 WVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 533
           WVCNF+VGL+FL+LVE  GVAPVYA FGGVSLLSA+FAYYFIVETKGRSLEEIEMSLN N
Sbjct: 472 WVCNFVVGLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKGRSLEEIEMSLNRN 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447125|ref|XP_002271129.1| PREDICTED: probable plastidic glucose transporter 1-like [Vitis vinifera]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/547 (75%), Positives = 457/547 (83%), Gaps = 21/547 (3%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
           M  AT++H P+  VP   S    P         +K K  RF F  RS K +V AAK+QLP
Sbjct: 1   MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60

Query: 54  ELRSRKQKQDGE-------NLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 106
           EL ++K  +  E        + + ++  +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVM
Sbjct: 61  ELHAQKPVEIRELGVAGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 120

Query: 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166
           NGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLIL
Sbjct: 121 NGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLIL 180

Query: 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI 226
           GA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGI
Sbjct: 181 GALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGI 240

Query: 227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIAN 286
           I SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +
Sbjct: 241 IVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRS 300

Query: 287 LWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVL 346
           LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIGG LF LQQFAGINGVL
Sbjct: 301 LWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVL 360

Query: 347 YFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGM 406
           YFSSLTFQDVGIT GALASL VGVTNFAG       ALCA YLMD++GRQ+LLIGSYLGM
Sbjct: 361 YFSSLTFQDVGITSGALASLFVGVTNFAG-------ALCALYLMDRQGRQRLLIGSYLGM 413

Query: 407 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIM 466
           A+SM L+V A   P+DE   HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +TRGKIM
Sbjct: 414 AVSMFLIVYAIISPVDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQTRGKIM 473

Query: 467 GFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 526
           GFSFSVHWVCNF+VGL+FL+LVE  GVAPVYA FGGVSLLSA+FAYYFIVETKGRSLEEI
Sbjct: 474 GFSFSVHWVCNFVVGLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKGRSLEEI 533

Query: 527 EMSLNAN 533
           EMSLN N
Sbjct: 534 EMSLNRN 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136954|ref|XP_002326986.1| predicted protein [Populus trichocarpa] gi|222835301|gb|EEE73736.1| predicted protein [Populus trichocarpa]

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/541 (73%), Positives = 444/541 (82%), Gaps = 25/541 (4%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQ--LPELRSR 58
           M VATVL  PV PV S  ++   P   K  +  F FS+R    +V A K+Q  LPE ++ 
Sbjct: 1   MWVATVLPKPVPPVLSVLTSSRNP---KQSSFHFRFSYRPLNLEVSATKQQQQLPEPKA- 56

Query: 59  KQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELG 118
                       D+K     DLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+AKELG
Sbjct: 57  ------------DKKNPSSSDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSVAKELG 104

Query: 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178
           FEGN  LEGLVVSIFIAGAF+GS++SGSL DKLGCRRTFQ+DTIPLILGA++SAQAHSLD
Sbjct: 105 FEGNSTLEGLVVSIFIAGAFLGSVASGSLVDKLGCRRTFQLDTIPLILGALVSAQAHSLD 164

Query: 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238
           E+LWGRFLVGLGIGV+TVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFL IP+E 
Sbjct: 165 EILWGRFLVGLGIGVHTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIASLFLDIPSET 224

Query: 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE 298
           DPHWWRT+LY+AS PGFILALGMQF VESPRWLCK G L+DAK VI N+WG SE+  AI+
Sbjct: 225 DPHWWRTILYLASAPGFILALGMQFAVESPRWLCKVGRLDDAKTVIRNIWGSSEVETAIQ 284

Query: 299 EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI 358
           +FQ VIK +G ++ S W ELLEEPHSRVAFIGGALF+LQQFAGINGVLYFSSLTF+DVGI
Sbjct: 285 DFQSVIKNNGVNVGSGWLELLEEPHSRVAFIGGALFVLQQFAGINGVLYFSSLTFKDVGI 344

Query: 359 TDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATS 418
           T  +LASL VG+ NFAG       ALCA YLMDKEGRQKLLIGSYLGMA+SM L+  A  
Sbjct: 345 TSSSLASLFVGLANFAG-------ALCAVYLMDKEGRQKLLIGSYLGMAVSMFLIACAIG 397

Query: 419 LPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNF 478
            P+DE+ SHNLSILGTL YIFTFAIGAGPVTGL+IPELSS + RGKIMGFSFSVHWVCNF
Sbjct: 398 FPVDEELSHNLSILGTLMYIFTFAIGAGPVTGLIIPELSSAKMRGKIMGFSFSVHWVCNF 457

Query: 479 LVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGN 538
           LVGL FLDLVE FGVAPVY GFG VSLL+A++A YF+VETKGRSLEEIEMSLN N +  +
Sbjct: 458 LVGLLFLDLVEIFGVAPVYTGFGSVSLLAAIYAKYFLVETKGRSLEEIEMSLNPNFSVRD 517

Query: 539 K 539
           K
Sbjct: 518 K 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848760|ref|XP_002892261.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata] gi|297338103|gb|EFH68520.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/522 (74%), Positives = 436/522 (83%), Gaps = 15/522 (2%)

Query: 19  STLFTPSPAKMKTLRFSFSHRSTK------FKVLAAKKQLPELRSRKQKQDGENLLSRDQ 72
           +T+    P  +  L FS+  R T       F     K ++  L + K K D ++ LS D+
Sbjct: 5   NTVILHQPNSLTRLTFSYPTRLTHSRKVSPFSRFLRKNRVTALSTTK-KPDEDHELSPDE 63

Query: 73  KAEE-GFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVS 131
           K E+   DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN ILEGLVVS
Sbjct: 64  KLEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVS 123

Query: 132 IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI 191
           IFIAGAF+GSI SG L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GRFLVGLGI
Sbjct: 124 IFIAGAFIGSIVSGPLVDKFGYRRTFQIVTIPLILGALVSAQAHSLDEILCGRFLVGLGI 183

Query: 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251
           GVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWRTMLY+AS
Sbjct: 184 GVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVAS 243

Query: 252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDL 311
           +PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SEI KA+E+FQ V+K +GS+L
Sbjct: 244 MPGFLLALGMQFAVESPRWLCKVGQLDDAKVVIRNIWGGSEIEKAVEDFQSVMKNNGSNL 303

Query: 312 DSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVT 371
           +S+W ELL++PHSRVAFIGG LF+LQQFAGINGVLYFSS+TFQ+VGIT GA ASL VGVT
Sbjct: 304 NSRWLELLDKPHSRVAFIGGTLFVLQQFAGINGVLYFSSITFQNVGITSGAQASLYVGVT 363

Query: 372 NFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSI 431
           NFAG       ALCASYL+DK+GR+KLLIGSYLGMA+SM L+V +   PLDED S +LSI
Sbjct: 364 NFAG-------ALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYSVGFPLDEDLSQSLSI 416

Query: 432 LGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF 491
           LGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE F
Sbjct: 417 LGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVEKF 476

Query: 492 GVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 533
           GV  VYAGFG VSLL+A F+Y FIVETKGRSLEEIEMSLN+ 
Sbjct: 477 GVGTVYAGFGSVSLLAAAFSYRFIVETKGRSLEEIEMSLNSR 518

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463102|ref|XP_004149273.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/551 (70%), Positives = 444/551 (80%), Gaps = 23/551 (4%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPSPAKMK-------TLR--FSFSHRST-KFKVLAAKK 50
           MRV  +LH PV P P+         P            LR  F +  RS  KF+VLA  K
Sbjct: 1   MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFRSVRKFEVLATNK 60

Query: 51  QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
           QLPEL+  K + +   LL    +AE G  FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61  QLPELKDGKSESEEGILL----RAEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116

Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
           PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176

Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
           ++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII 
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236

Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
           SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296

Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYF 348
           GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIGGALF LQQFAGINGVLYF
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356

Query: 349 SSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI 408
           SSLTF+DVGIT+ A+ASL++G+TNF+G       ALCA YLMDK+GRQ+LLIGSYLGMA+
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSG-------ALCALYLMDKQGRQRLLIGSYLGMAV 409

Query: 409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF 468
           SMLL+V       DE+ SHNLSI+GT+ YIF+FAIGAGPVTG++IPELSS R RGKIM F
Sbjct: 410 SMLLIVSTIGFQFDEELSHNLSIVGTIAYIFSFAIGAGPVTGIIIPELSSTRARGKIMAF 469

Query: 469 SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEM 528
           S +VHWVCNFLVGLFFLDLV+TFGVAPVYA FG  SL++A+F+ YF+VETKGRSLEEIEM
Sbjct: 470 SLAVHWVCNFLVGLFFLDLVQTFGVAPVYASFGAFSLVAAIFSKYFLVETKGRSLEEIEM 529

Query: 529 SLNANSTPGNK 539
           +LN N    +K
Sbjct: 530 TLNTNFHGSDK 540

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505434|ref|XP_004162468.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/551 (70%), Positives = 446/551 (80%), Gaps = 23/551 (4%)

Query: 1   MRVATVLHHPVRPVPSYR-STLFTPSPAKMKTLRFSFSHRS---------TKFKVLAAKK 50
           MRV  +LH PV P P+   +   +  P+   +   SF  RS          KF+VLA  K
Sbjct: 1   MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFPSVRKFEVLATNK 60

Query: 51  QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
           QLPEL+  K + +   LL    +AE G  FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61  QLPELKDGKSESEEGILL----RAEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116

Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
           PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176

Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
           ++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII 
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236

Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
           SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296

Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYF 348
           GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIGGALF LQQFAGINGVLYF
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356

Query: 349 SSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI 408
           SSLTF+DVGIT+ A+ASL++G+TNF+G       ALCA YLMDK+GRQ+LLIGSYLGMA+
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSG-------ALCALYLMDKQGRQRLLIGSYLGMAV 409

Query: 409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF 468
           SMLL+V       DE+ SHNLSI+GT+ YIF+FAIGAGPVTG++IPELSS R RGKIM F
Sbjct: 410 SMLLIVSTIGFQFDEELSHNLSIVGTIAYIFSFAIGAGPVTGIIIPELSSTRARGKIMAF 469

Query: 469 SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEM 528
           S +VHWVCNFLVGLFFLDLV+TFGVAPVYA FG  SL++A+F+ YF+VETKGRSLEEIEM
Sbjct: 470 SLAVHWVCNFLVGLFFLDLVQTFGVAPVYASFGAFSLVAAIFSKYFLVETKGRSLEEIEM 529

Query: 529 SLNANSTPGNK 539
           +LN N    +K
Sbjct: 530 TLNTNFHGSDK 540

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310877902|gb|ADP37182.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/440 (83%), Positives = 397/440 (90%), Gaps = 7/440 (1%)

Query: 94  MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC 153
           MSNFLFGYHIGVMNGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GC
Sbjct: 1   MSNFLFGYHIGVMNGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGC 60

Query: 154 RRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 213
           RRT QIDTIPLILGA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS
Sbjct: 61  RRTLQIDTIPLILGALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 120

Query: 214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK 273
           LGTLCQ+GTCLGII SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK
Sbjct: 121 LGTLCQIGTCLGIIVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCK 180

Query: 274 GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGAL 333
            G LN+AK +I +LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIGG L
Sbjct: 181 AGRLNEAKTIIRSLWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTL 240

Query: 334 FLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE 393
           F LQQFAGINGVLYFSSLTFQDVGIT GALASL VGVTNFAG       ALCA YLMD++
Sbjct: 241 FFLQQFAGINGVLYFSSLTFQDVGITSGALASLFVGVTNFAG-------ALCALYLMDRQ 293

Query: 394 GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVI 453
           GRQ+LLIGSYLGMA+SM L+V A   P+DE   HNLSILGTL YIF+FAIGAGPVTGL+I
Sbjct: 294 GRQRLLIGSYLGMAVSMFLIVYAIISPVDEQLGHNLSILGTLMYIFSFAIGAGPVTGLII 353

Query: 454 PELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 513
           PELSS +TRGKIMGFSFSVHWVCNF+VGL+FL+LVE  GVAPVYA FGGVSLLSA+FAYY
Sbjct: 354 PELSSTQTRGKIMGFSFSVHWVCNFVVGLYFLELVEKLGVAPVYASFGGVSLLSAIFAYY 413

Query: 514 FIVETKGRSLEEIEMSLNAN 533
           FIVETKGRSLEEIEMSLN N
Sbjct: 414 FIVETKGRSLEEIEMSLNRN 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462225|ref|XP_003601394.1| hypothetical protein MTR_3g080240 [Medicago truncatula] gi|355490442|gb|AES71645.1| hypothetical protein MTR_3g080240 [Medicago truncatula]

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/541 (70%), Positives = 431/541 (79%), Gaps = 35/541 (6%)

Query: 22  FTPSPAKMKTLRFSF--SHRSTKFKVLAAKKQ-LPELRSRKQKQDGE----NLLSRDQKA 74
           F+    K+KT+ +S   S R +K +V A K Q   E ++     D E    + L  +   
Sbjct: 23  FSKPKIKIKTIPYSLNSSFRLSKLRVSATKDQNHSESQTSNNVSDDEVTEQHPLDENGGV 82

Query: 75  EEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFI 134
             GFDLGWLP+FPHVLIAS+SNF FGYHIG+MNGPI+SIA+ELGFEGN  +EGLVVSIFI
Sbjct: 83  GGGFDLGWLPSFPHVLIASLSNFTFGYHIGIMNGPIISIARELGFEGNSFIEGLVVSIFI 142

Query: 135 AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVN 194
           AGAF+GS+S+GSL DKLGCR TFQIDTIPLILGAIISA AHSLDE+L GRFLVGLGIGVN
Sbjct: 143 AGAFIGSLSTGSLVDKLGCRLTFQIDTIPLILGAIISANAHSLDEILGGRFLVGLGIGVN 202

Query: 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG 254
            VLVPIYISEVAPTKYRGSLG+LCQ+GTCLGII SL LGIP+E+DPHWWRTMLYIAS+PG
Sbjct: 203 AVLVPIYISEVAPTKYRGSLGSLCQIGTCLGIIASLSLGIPSENDPHWWRTMLYIASVPG 262

Query: 255 FILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314
           F++ LGMQF V+SPRWLCK G +NDAK V+  LWG SE+  AIEEFQ V K DGSDLDS+
Sbjct: 263 FVVGLGMQFAVDSPRWLCKAGRINDAKRVVWELWGASEVEGAIEEFQSVSKNDGSDLDSR 322

Query: 315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFA 374
           WSE+LE+PHSRVAFIGGALF+LQQFAGIN VLYFSSLTFQDVGI   ALASL VG+TNFA
Sbjct: 323 WSEILEQPHSRVAFIGGALFVLQQFAGINAVLYFSSLTFQDVGIQSSALASLFVGLTNFA 382

Query: 375 GLRSEKYCALCASYLMDKEGRQKLLIGSYLGM---------------------AISMLLV 413
           G       ALCA YL+D+EGRQKL+IGSYLGM                     AISM LV
Sbjct: 383 G-------ALCALYLIDREGRQKLIIGSYLGMVSVCKMLVTSFLEYVNKSIMHAISMFLV 435

Query: 414 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH 473
           V A   PLDE  S+NLSILGT+ YIF+FAIGAGPVTG++IPELSS RTRGKIMGFSFS H
Sbjct: 436 VYAVIFPLDEQLSNNLSILGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSFSTH 495

Query: 474 WVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 533
           WVCNF+VGLFFL+LVE FGVAPVYA FG VSLL+A FA+YF+VETKG SLEEIE SLN+ 
Sbjct: 496 WVCNFVVGLFFLELVEKFGVAPVYASFGAVSLLAAAFAHYFLVETKGCSLEEIERSLNSK 555

Query: 534 S 534
           +
Sbjct: 556 A 556

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547853|ref|XP_003542319.1| PREDICTED: probable plastidic glucose transporter 1-like [Glycine max]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/528 (71%), Positives = 421/528 (79%), Gaps = 25/528 (4%)

Query: 4   ATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQD 63
           A V  H   P P   S            +R S  H S K KV A       L+S + K  
Sbjct: 10  AIVSVHYSEPSPKLVSISRARDKPYTLVIRSS-GHLSNKLKVSA-------LKSNETKPK 61

Query: 64  GENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP 123
             +L             GWLPAFPHVL+ASMSNF+FGYHIGVMNGPIVSIA+ELGFEGN 
Sbjct: 62  QFSLCQN----------GWLPAFPHVLVASMSNFIFGYHIGVMNGPIVSIARELGFEGNS 111

Query: 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183
            +EGLVVSIFIAGAF+GSISS SL D+LG R TFQI++IPLILGAIISAQAHSL+E++ G
Sbjct: 112 FIEGLVVSIFIAGAFIGSISSASLLDRLGSRLTFQINSIPLILGAIISAQAHSLNEIIGG 171

Query: 184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243
           RFLVGLGIGVNTVLVPIYISEVAPTKYRG+LG+LCQ+GTCLGIITSLFLGIP+E+DPHWW
Sbjct: 172 RFLVGLGIGVNTVLVPIYISEVAPTKYRGALGSLCQIGTCLGIITSLFLGIPSENDPHWW 231

Query: 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303
           RTMLYIAS+PG ++ALGMQF V+SPRWLCK G +NDAK V+  LWG SE++ AIEEFQ V
Sbjct: 232 RTMLYIASIPGILVALGMQFAVDSPRWLCKAGRINDAKTVVRELWGASEVDSAIEEFQSV 291

Query: 304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGAL 363
            K DGSDL S+WSE+LEEPHSRVAFIGG LF+LQQFAGINGVLYFSSLTFQ VG+   AL
Sbjct: 292 SKNDGSDLASRWSEILEEPHSRVAFIGGTLFVLQQFAGINGVLYFSSLTFQKVGVESSAL 351

Query: 364 ASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE 423
           ASL VG+TNFAG       ALCA YL+D+EGRQKLLIGSYLGMAISM LV      PLDE
Sbjct: 352 ASLFVGLTNFAG-------ALCALYLIDREGRQKLLIGSYLGMAISMFLVASGIIFPLDE 404

Query: 424 DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 483
              +NLSILGT+ YIF+FAIGAGPVTG++IPELSS RTRGKIMGFSFS HWVCNF+VGLF
Sbjct: 405 QLGNNLSILGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSFSTHWVCNFVVGLF 464

Query: 484 FLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLN 531
           FL+LV+ FGVAPVYA FG +SLL+A FAYYFIVETKGRSLEEIE SLN
Sbjct: 465 FLELVDKFGVAPVYASFGAISLLAATFAYYFIVETKGRSLEEIERSLN 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561706|ref|NP_171996.2| putative plastidic glucose transporter 1 [Arabidopsis thaliana] gi|117940084|sp|Q0WVE9.2|PLST1_ARATH RecName: Full=Probable plastidic glucose transporter 1 gi|53828535|gb|AAU94377.1| At1g05030 [Arabidopsis thaliana] gi|55733727|gb|AAV59260.1| At1g05030 [Arabidopsis thaliana] gi|332189660|gb|AEE27781.1| putative plastidic glucose transporter 1 [Arabidopsis thaliana]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/474 (77%), Positives = 412/474 (86%), Gaps = 7/474 (1%)

Query: 60  QKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGF 119
           +K D ++ +S     +   DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGF
Sbjct: 54  KKPDDDHEISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGF 113

Query: 120 EGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE 179
           EGN ILEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE
Sbjct: 114 EGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDE 173

Query: 180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239
           +L GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDD
Sbjct: 174 ILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDD 233

Query: 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE 299
           PHWWRTMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+
Sbjct: 234 PHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVED 293

Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT 359
           FQ V+K  GS+L+S+W ELL++PHSRVAFIGG+LF+LQQFAGINGVLYFSSLTFQ+VGIT
Sbjct: 294 FQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGIT 353

Query: 360 DGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL 419
            GA ASL VGVTNFAG       ALCASYL+DK+GR+KLLIGSYLGMA+SM L+V A   
Sbjct: 354 SGAQASLYVGVTNFAG-------ALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGF 406

Query: 420 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL 479
           PLDED S +LSILGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWV NFL
Sbjct: 407 PLDEDLSQSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFL 466

Query: 480 VGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 533
           VGLFFLDLVE +GV  VYA FG VSLL+A F++ F VETKGRSLEEIE+SLN+ 
Sbjct: 467 VGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLNSR 520

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WVE9	PLST1_ARATH	No assigned EC number	0.7742	0.8664	0.8912	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	539
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-92
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-81
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-52
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-20
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-19
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	8e-16
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-08
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	8e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	2e-04
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	4e-04
PRK10504	471	PRK10504, PRK10504, putative transporter; Provisio	0.001
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.002
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.003
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.004

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  288 bits (738), Expect = 8e-92
 Identities = 155/454 (34%), Positives = 249/454 (54%), Gaps = 22/454 (4%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGF---------EGNPILEGLVVSIFIAGAFV 139
            L+A++  FLFGY  GV+   +  I     F           + +L GL+VSIF  G  +
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVL 197
           GS+ +G L D+ G +++  I  +  ++GA++   A   S   ++ GR +VGLG+G  +VL
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITS--LFLGIPAEDDPHWWRTMLYIASLPGF 255
           VP+YISE+AP K RG+LG+L Q+G   GI+ +  + LG+    +   WR  L +  +P  
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 256 ILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW 315
           +L +G+ F  ESPRWL   G L +A+AV+A L G S++++ I+E +  +++      + W
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 316 SELLEEPHSR-VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFA 374
            EL      R    +G  L + QQ  GIN + Y+S   F+ +G++D  L +++VGV NF 
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Query: 375 GLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGT 434
                      A +L+D+ GR+ LL+    GMAI  L++  A         +  ++I+  
Sbjct: 302 FT-------FIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFI 354

Query: 435 LFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVA 494
           L +I  FA+G GPV  +++ EL     R K M  + + +W+ NFL+G  F  +    G  
Sbjct: 355 LLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-G 413

Query: 495 PVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEM 528
            V+  F G+ +L  LF ++F+ ETKGR+LEEI+ 
Sbjct: 414 YVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  260 bits (666), Expect = 8e-81
 Identities = 153/463 (33%), Positives = 250/463 (53%), Gaps = 28/463 (6%)

Query: 85  AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP------ILEGLVVSIFIAGAF 138
                LIA++   +FGY  GV+ G +   A E  F           L GLVVSIF+ G F
Sbjct: 26  VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGF 85

Query: 139 VGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNT 195
           +G++ +G L+D+ G +++  I  +  ++GAI+   A    S++ ++ GR L+G+G+G+ +
Sbjct: 86  IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145

Query: 196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH--WWRTMLYIASLP 253
            LVP+Y+SE+AP   RG+L +L Q+    GI+ +   G       +   WR  L +  +P
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205

Query: 254 GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD----GS 309
             +L LG+ F  ESPRWL   G + +A+  +A L G S  +K + +   +I         
Sbjct: 206 AGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR 265

Query: 310 DLDSQWSELLEEPHS--RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALAS 365
            +   W  L        R  F+G  L   QQF GIN ++Y+S   F++ G++     L S
Sbjct: 266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVS 325

Query: 366 LLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLL--VVGATSLPLDE 423
           ++VG  NFA           A +L+D+ GR+ LL+    GMAI + +  ++GA+ +    
Sbjct: 326 IIVGAVNFAF-------TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378

Query: 424 DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 483
             S N++I+  L +I  FA+G GPV  +++ E+     R K +  + + +W+ NF+VG  
Sbjct: 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL 438

Query: 484 FLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 526
           F  ++E+ GV  V+  FGG+++L  +F Y+F+ ETKGR+LEEI
Sbjct: 439 FPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  184 bits (469), Expect = 4e-52
 Identities = 133/476 (27%), Positives = 216/476 (45%), Gaps = 57/476 (11%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSI------AKELGFEGNPILEGLVVSIFIAGAFVGSI 142
            L+A++   LFGY   V++G + S+       + L       L G  V+  + G  +G  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 143 SSGSLADKLGCRRTFQIDTIPLILGAIISA--------QAHSLDEMLWG----RFLVGLG 190
             G  +++ G R + +I  +   + A+ SA                +      R + G+G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 191 IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL--GIPAEDDPHW-----W 243
           +G+ ++L P+YI+E+AP   RG L +  Q     G +   F+   I    D  W     W
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193

Query: 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303
           R M    ++P  +  + + F  E+PR+L   G    A+ ++  + G +   +A++E    
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI--- 250

Query: 304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI-TDGA 362
             K   D   +    L      V  IG  L + QQF GIN VLY++   F+ +G  TD A
Sbjct: 251 --KHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA 308

Query: 363 L-ASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL 421
           L  +++VGV N           + A   +DK GR+ L I   LGMAI M  +  A     
Sbjct: 309 LLQTIIVGVINLT-------FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA----- 356

Query: 422 DEDFSHN----LSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN 477
              F       +++L  LFY+  FA+  GPV  +++ E+  N  RGK +  + +  W+ N
Sbjct: 357 ---FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIAN 413

Query: 478 FLVGLFF------LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIE 527
           + V   F        LV  F     Y  +G + +L+ALF + F+ ETKG++LEE+E
Sbjct: 414 YFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           +L+  +  FL G   G+++  +  +A++LG   +    GL+VS F  G  +GS+ +G L+
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
           D+ G RR   +  +   LG+++ A A SL  +L GRFL+GLG G         I+E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
           K RG    L   G  LG +    LG     +   WR +  I ++ G +LAL + F +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLG-GLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 109/409 (26%), Positives = 172/409 (42%), Gaps = 44/409 (10%)

Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
            L  S F  G  +GS   G L+D+ G ++   + T+   +  +++A + +    L  R L
Sbjct: 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189

Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246
           VG+GIG   V   +  +E  P K R  +GTL QV   LG++    L + A   P  WR +
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV---LLPLVAYFIPD-WRWL 245

Query: 247 LYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKK 306
               SLP F+  L   F  ESPRWL   G + +A  ++  +   +      E   L ++K
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK 305

Query: 307 DGSDLDSQWS--ELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALA 364
           D S    Q+S  +L   P+ R   +     ++  F       Y+  L   D+G   G + 
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTL---CLMMLWFT--TAFSYY-GLVL-DLGNLGGNIY 358

Query: 365 SLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED 424
             L      +GL  E    L    L+D+ GR+  +  S L   +++LL++    +P+D  
Sbjct: 359 LDLF----ISGL-VELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL---FVPVD-- 408

Query: 425 FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL--VG- 481
             + L     +   F     A  +  L   EL     R   +G       VC+ +  VG 
Sbjct: 409 -LYFLRTALAVLGKF-GITSAFQMVYLYTAELYPTVVRNLGVG-------VCSTMARVGS 459

Query: 482 -----LFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEE 525
                L +L     F        FGG++LL+ +    F+ ETKG  L E
Sbjct: 460 IISPFLVYLGEKWLF---LPLVLFGGLALLAGILT-LFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 84/382 (21%), Positives = 151/382 (39%), Gaps = 38/382 (9%)

Query: 100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159
           GY +  M     +I+ E G +  P+  G + S  + G   G++  G LAD++G RR    
Sbjct: 30  GYDLAAMGFAAPAISAEWGLD--PVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLW 87

Query: 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ 219
             +   +  ++ A A ++ ++L  RFL GLG+G     +   +SE AP ++RG+   L  
Sbjct: 88  SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMF 147

Query: 220 VGTCLGIITSLFLG---IPAEDDPHWWRTMLYIASL-PGFILALGMQFTVESPRWLCKGG 275
            G  +G     FL    IP       WR++ Y+  + P  +L L M+F  ES  +L    
Sbjct: 148 CGYPIGAAVGGFLAGWLIPV----FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203

Query: 276 MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFL 335
              +    I N        +A           G+        L +   +R+  +   L+ 
Sbjct: 204 --PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF-KALFQGKTARITVLLWLLYF 260

Query: 336 LQQFAGINGVLYF--SSLTFQDVGIT-DGALASLLVGVTNFAGLRSEKYCALCASYLMDK 392
           +         +YF  + L    V +    +LA+    + NF G+      ++   +L D+
Sbjct: 261 MLLV-----GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIG----SIIFGWLADR 311

Query: 393 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL- 451
            G +   +   LG   ++L+     S          L +LG +   F      G  +GL 
Sbjct: 312 LGPRVTALLLLLGAVFAVLVGSTLFS-------PTLLLLLGAIAGFFV----NGGQSGLY 360

Query: 452 -VIPELSSNRTRGKIMGFSFSV 472
            ++        R   +G++  +
Sbjct: 361 ALMALFYPTAIRATGVGWAIGI 382

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 72/385 (18%), Positives = 128/385 (33%), Gaps = 49/385 (12%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           + +A+    L    +G        +A++LG     I  GL+++ F  G  +    +G L+
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
           D+ G RR   I  +   LG ++   A SL  +L  R L GLG G         I++  P 
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116

Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268
           + RG    L   G  LG      LG         WR    I ++   + A+     +   
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLG-GLLASLFGWRAAFLILAILALLAAVLAALLL--- 172

Query: 269 RWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328
                                           +    K   +  +      +        
Sbjct: 173 ---------------------------PRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVL 205

Query: 329 IGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASY 388
                 LL        +L +  L  + +G++   LA LL+G+    G        L    
Sbjct: 206 WLLLALLL-FGFAFFALLTYLPLYQEVLGLSA-LLAGLLLGLAGLLGAIG----RLLLGR 259

Query: 389 LMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGP 447
           L D+ GR++ L+ + L + ++ L +   +        + +   L     +  F  G   P
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLS-------LTESSLWLLVALLLLGFGAGLVFP 312

Query: 448 VTGLVIPELSSNRTRGKIMGFSFSV 472
               ++ +L+    RG   G   + 
Sbjct: 313 ALNALVSDLAPKEERGTASGLYNTA 337

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 14/192 (7%)

Query: 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCAL 384
               +  AL       G  G+L +  L  Q+V     A A LL+ +    G+      AL
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGI----LGAL 229

Query: 385 CASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 443
               L D+ GR + LL+   L  A+ +LL+  A SL L         +L  L  +     
Sbjct: 230 LGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL---------LLVALLLLGFGLG 280

Query: 444 GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGV 503
            A P    +  EL+    RG   G   +   +   L  L    L++T G   V+     +
Sbjct: 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340

Query: 504 SLLSALFAYYFI 515
           +LL+AL      
Sbjct: 341 ALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 66/402 (16%), Positives = 120/402 (29%), Gaps = 62/402 (15%)

Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
           G +++ +  G  +G+     L  +L  RR         I+  ++SA A S   +L  R L
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRT 245
            GL  GV   +     + + P   RG    L   G  L  +  + LG        + WR 
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ--LFGWRA 168

Query: 246 MLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIK 305
                ++   +  L +   +              + ++   L                  
Sbjct: 169 TFLAIAVLALLALLLLWKLLPPS---------EISGSLPGPLRTL--------------- 204

Query: 306 KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALAS 365
                       LL  P   +  +   LF+   FA       +     + V     +  S
Sbjct: 205 ----------LRLLRRPGVLLGLLATFLFMTGHFALYT----YIRPFLESVAGFSVSAVS 250

Query: 366 ---LLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD 422
              L  G+  F G        L    L D+ G ++ LI + L +A+++L       L   
Sbjct: 251 LVLLAFGIAGFIG-------NLLGGRLADR-GPRRALIAALLLLALALLA------LTF- 295

Query: 423 EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL 482
                + ++   L +++ FA               +          + +   +   L   
Sbjct: 296 --TGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAA 353

Query: 483 FFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 524
               +++  G A      G   LL AL           R+  
Sbjct: 354 LGGLVLDALGYAAT-GWVGAALLLLALLLALLSARKDRRTAA 394

Length = 394

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
           G   S  I G   G++  G LAD++G +R   +      L ++ +AQA     +L  R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 187 VGLGIGVNTVLVPIYI---SEVAPTKYRGSLGTLCQVGT-CLGIITSLFLGIPAEDDPHW 242
            G+G+G     +P  I   SE    + RG+  +L   G    G + S+   + A D    
Sbjct: 113 TGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-- 167

Query: 243 WRTMLYIASL-PGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGE 290
           WR + Y+  + P  ++ L M++  ES  +    G       V+  L+GE
Sbjct: 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 3/181 (1%)

Query: 80  LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFV 139
           L  L     +L+ +++ FL  +    +   +    +E+         GL++S+F  G  +
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS-AAEAGLLLSLFGLGGIL 226

Query: 140 GSISSGSLADKLGCRRTFQIDTIPL-ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLV 198
           G++  G L+D+LG RR   +  + L  LG ++ A A SL  +L    L+G G+G     +
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286

Query: 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258
               SE+AP + RG+   L      LG      L      D   +  +  I +    + A
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL-LDTGGYGGVFLILAALALLAA 345

Query: 259 L 259
           L
Sbjct: 346 L 346

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185
           +G++  I   G  VG+   G LADKLG ++   I        A  S+        L+ R 
Sbjct: 204 KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRL 263

Query: 186 LVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLGIITSLF-----------LG 233
           L G GIG    +V  Y +E    + RG  L  LC      GI  +               
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323

Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
           + +    H WR  + + + P       + F  ESPR+  + G  ++A  ++
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMIL 374

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 69  SRDQKAEEGFDLGWLPAF-----PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP 123
           S+  K  E      +PA+       VL   ++  LFG+    +   +    + LG   + 
Sbjct: 179 SKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL--SA 236

Query: 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183
           +L GL++ +      +G +  G L+D+LG RR   +  + LIL A+  A     +  LW 
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296

Query: 184 R---FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII 227
                L+G G G+    +   +S++AP + RG+   L      LG  
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343

Length = 346

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 70/413 (16%), Positives = 126/413 (30%), Gaps = 38/413 (9%)

Query: 111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170
             + ++LG        G V S F  G  VG    G L D+ G R+T     + +++  + 
Sbjct: 18  PMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTL---AVFIVIWGVF 72

Query: 171 SAQAHSLDEMLWG----RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG- 225
           +    +           R L+G         + + ++   P   R +  ++      LG 
Sbjct: 73  TG-LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131

Query: 226 -IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
            I   L   I        W+    I  + G I  +     +  P           AK + 
Sbjct: 132 IIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPP--------QKAKWLT 180

Query: 285 ANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGING 344
                +  +   +   Q   K   +    Q  ELL++   RV  +    FL+    G+  
Sbjct: 181 EEE--KYIVVGGLLAEQQG-KGPSTPKKYQIKELLKDR--RVWGLALGQFLVN--IGLGF 233

Query: 345 VLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYL 404
            L +               A  +  +    G        L    L D   R+   +    
Sbjct: 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIG---MILGG-RLSDLLLRRGKSLVFAR 289

Query: 405 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGK 464
             AI   LV   + L    ++ +       L  +  F +GAG +   +I + +     G 
Sbjct: 290 KTAIIAGLV--LSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGL 347

Query: 465 IMGFSFSVHWVCNFLVGLFFLDLVETFGV-APVYAGFGGVSLLSALFAYYFIV 516
             G   S+  +   +  +    +  T G  A           L    +Y  +V
Sbjct: 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALM-VVAALALIGALSYLLLV 399

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 8/191 (4%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           +L  +++  L G  +G+++  +  +   L      +L GL++S F  G  +GS+ +G L 
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLD--EMLWGRFLVGLGIGVNTVLVPIYISEVA 206
           D+ G R+   I  +  +LG ++ A A ++    +L  R L GLG G    +    +SE  
Sbjct: 64  DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123

Query: 207 PTKYRGSL------GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260
           P      L           +G  LG + +  L             +  +  L   IL L 
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183

Query: 261 MQFTVESPRWL 271
           +   + +PR  
Sbjct: 184 LDLLLAAPRLP 194

Length = 338

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 102/467 (21%), Positives = 161/467 (34%), Gaps = 81/467 (17%)

Query: 121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-------IDTIPLILGAIISAQ 173
               +   V      G   G +  G LADKLG +R +        I T+   L    S +
Sbjct: 53  LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPK 112

Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC----QVGTCLGIITS 229
           +       W RF +G+GIG +  L  I  SE A  K+RG++          G   G I +
Sbjct: 113 SVMATLCFW-RFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171

Query: 230 LFL------GIPAEDDPH------------WWRTMLYIASLPGFILALGMQFTV-ESPRW 270
           L +       + A  D               WR ++   ++P  +LAL  + T+ E+PR+
Sbjct: 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA-LLALYFRLTIPETPRY 230

Query: 271 LCKGG-----MLNDAKAVIA-NLWGESEINKAIEEFQLVIKKDGSDL---DSQWSELLEE 321
                       +D  AV+   +  E +  +       V K   SD      +W      
Sbjct: 231 TADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGK-- 288

Query: 322 PHSRVAFIGGAL--FLLQ-QFAGINGVLYFSSLTFQDVG-ITDGALASLLVGVTNFAGLR 377
                  +G A   FLL   F G+N       +    +G     A  +    +   A   
Sbjct: 289 -----HLLGTAGSWFLLDIAFYGVN---LNQKVILSAIGYSPPAATNNAYEELYKTA--V 338

Query: 378 SEKYCALCAS--------YLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 429
                AL  +        +L+D  GR+ + +  +  + + +  V+G      +   +H  
Sbjct: 339 GNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTV-LFFVLGF---AYNHLSTHGF 394

Query: 430 SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 489
             +  L   F    G    T +V  E+   R R    G S +       +    FL L +
Sbjct: 395 LAIYVLAQFF-ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453

Query: 490 ----------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 526
                        +  V   F     L  LF    I ETKG+SLEE+
Sbjct: 454 HGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164
           ++N  + S+A+ LG   +P+   +V+  ++    V   +SG LAD++G R  F    +  
Sbjct: 28  IVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85

Query: 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
            LG++  A + +L+E+L  R L G+G     ++VP+
Sbjct: 86  TLGSLFCALSGTLNELLLARVLQGVG---GAMMVPV 118

Length = 471

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 27/107 (25%), Positives = 47/107 (43%)

Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
           GL+++ +  G  + S  SG L D+ G +    +     +L   + A + ++  ++  RFL
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
            G G     V     I+++ P + RG    L   G  LG +    LG
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG 107

Length = 141

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 84  PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSIS 143
                VL+ S+  FL+G+ I  +N  ++   KE+ F+       L+   F  G F+ S+ 
Sbjct: 11  VKLAFVLLTSLF-FLWGF-ITCLNDILIPHLKEV-FDLTYFEASLIQFAFFGGYFIMSLP 67

Query: 144 SGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
           +G L  KLG +    +  +   +GA +   +A + S    L   F++  GIG+       
Sbjct: 68  AGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANP 127

Query: 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
           Y++ +   +       L Q    LG I    LG
Sbjct: 128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160

Length = 422

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCAS 387
            +   L           +     L  +D+G++  + A L+V   +          +L A 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA-SQAGLIVSAFSLGYA----LGSLLAG 55

Query: 388 YLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG- 446
           YL D+ GR+++L+   L  A+  LL+  A+SL L                +  F +G G 
Sbjct: 56  YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL--------------LLVGRFLLGLGG 101

Query: 447 ----PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGG 502
               P    +I E    + RG+ +G   +   +   L  L    L E+ G   ++     
Sbjct: 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161

Query: 503 VSLLSALFAYYFI 515
           + LL AL   + +
Sbjct: 162 LGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	539
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK12382	392	putative transporter; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK10504	471	putative transporter; Provisional	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
PRK10054	395	putative transporter; Provisional	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
KOG2533	495	consensus Permease of the major facilitator superf	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.96
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.96
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.95
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.94
KOG2615	451	consensus Permease of the major facilitator superf	99.94
TIGR00901	356	2A0125 AmpG-related permease.	99.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.93
PTZ00207	591	hypothetical protein; Provisional	99.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.92
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.9
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.9
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.9
KOG2563	480	consensus Permease of the major facilitator superf	99.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.88
PRK09669	444	putative symporter YagG; Provisional	99.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.87
PRK10429	473	melibiose:sodium symporter; Provisional	99.86
PF13347	428	MFS_2: MFS/sugar transport protein	99.85
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.84
PRK09848	448	glucuronide transporter; Provisional	99.84
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.82
PRK11462	460	putative transporter; Provisional	99.82
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.81
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.8
COG2211	467	MelB Na+/melibiose symporter and related transport	99.79
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.78
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.76
KOG3626	735	consensus Organic anion transporter [Secondary met	99.75
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.73
PRK10642	490	proline/glycine betaine transporter; Provisional	99.71
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.68
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.61
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.56
PRK15011	393	sugar efflux transporter B; Provisional	99.54
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
PRK09528	420	lacY galactoside permease; Reviewed	99.54
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.52
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.52
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.5
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.5
PRK05122	399	major facilitator superfamily transporter; Provisi	99.49
PRK12382	392	putative transporter; Provisional	99.47
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.46
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.45
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.41
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.4
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.4
PRK10054	395	putative transporter; Provisional	99.38
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.38
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.37
PRK03699	394	putative transporter; Provisional	99.37
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.35
PRK03893	496	putative sialic acid transporter; Provisional	99.35
PRK03633	381	putative MFS family transporter protein; Provision	99.35
PRK11663	434	regulatory protein UhpC; Provisional	99.34
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.34
PRK10489	417	enterobactin exporter EntS; Provisional	99.34
PRK03545	390	putative arabinose transporter; Provisional	99.33
TIGR00895	398	2A0115 benzoate transport.	99.33
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.32
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.31
PRK09705	393	cynX putative cyanate transporter; Provisional	99.31
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.3
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.29
PRK09952	438	shikimate transporter; Provisional	99.27
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.26
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.25
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.25
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.24
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.24
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.23
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.22
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.22
PRK10091	382	MFS transport protein AraJ; Provisional	99.22
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.21
PRK12307	426	putative sialic acid transporter; Provisional	99.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.21
TIGR00900	365	2A0121 H+ Antiporter protein.	99.21
PRK10504	471	putative transporter; Provisional	99.21
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.2
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.2
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.2
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.2
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.19
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.19
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.19
PRK11010	491	ampG muropeptide transporter; Validated	99.19
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.19
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.17
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.15
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.14
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.13
KOG3762	618	consensus Predicted transporter [General function	99.13
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.13
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.13
PRK15075	434	citrate-proton symporter; Provisional	99.12
PRK11043	401	putative transporter; Provisional	99.12
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.12
TIGR00898	505	2A0119 cation transport protein.	99.11
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.11
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.1
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.09
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.08
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.08
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.07
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.07
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.07
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.04
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.03
KOG0637	498	consensus Sucrose transporter and related proteins	99.03
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.03
KOG0569	485	consensus Permease of the major facilitator superf	99.02
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.02
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.01
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.01
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.99
KOG2615	451	consensus Permease of the major facilitator superf	98.98
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.97
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.97
PRK11902	402	ampG muropeptide transporter; Reviewed	98.97
TIGR00901	356	2A0125 AmpG-related permease.	98.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.94
COG0477	338	ProP Permeases of the major facilitator superfamil	98.94
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.92
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.89
PRK09848	448	glucuronide transporter; Provisional	98.88
PF13347	428	MFS_2: MFS/sugar transport protein	98.87
PTZ00207	591	hypothetical protein; Provisional	98.87
TIGR00805	633	oat sodium-independent organic anion transporter.	98.86
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.86
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.85
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.84
PRK10133	438	L-fucose transporter; Provisional	98.84
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.76
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.74
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.72
PRK10429	473	melibiose:sodium symporter; Provisional	98.71
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.68
PRK09669	444	putative symporter YagG; Provisional	98.65
KOG3762	618	consensus Predicted transporter [General function	98.64
KOG2532	466	consensus Permease of the major facilitator superf	98.63
KOG3810	433	consensus Micronutrient transporters (folate trans	98.54
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.53
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.5
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.5
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.49
KOG2533	495	consensus Permease of the major facilitator superf	98.47
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.45
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.43
COG2211	467	MelB Na+/melibiose symporter and related transport	98.43
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.4
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.39
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.38
KOG0254	513	consensus Predicted transporter (major facilitator	98.37
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.36
PRK11462	460	putative transporter; Provisional	98.33
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.32
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.28
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.26
PF12832	77	MFS_1_like: MFS_1 like family	98.16
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.05
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	98.01
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.99
COG3202	509	ATP/ADP translocase [Energy production and convers	97.98
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.96
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.94
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.76
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.59
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.46
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.38
PF12832	77	MFS_1_like: MFS_1 like family	97.26
KOG2563	480	consensus Permease of the major facilitator superf	97.14
PRK03612	521	spermidine synthase; Provisional	97.14
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.06
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.02
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.46
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.43
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.11
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.91
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.87
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.85
KOG3626	735	consensus Organic anion transporter [Secondary met	95.82
COG0477	338	ProP Permeases of the major facilitator superfamil	95.59
PRK03612	521	spermidine synthase; Provisional	95.17
KOG3097	390	consensus Predicted membrane protein [Function unk	95.1
KOG3880	409	consensus Predicted small molecule transporter inv	94.58
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.72
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	93.13
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.83
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.82
KOG3880	409	consensus Predicted small molecule transporter inv	92.69
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.37
KOG0637	498	consensus Sucrose transporter and related proteins	91.63
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	90.61
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.56
COG3202	509	ATP/ADP translocase [Energy production and convers	88.0
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.04
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.47
COG4262	508	Predicted spermidine synthase with an N-terminal m	83.88

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.5e-43  Score=332.50  Aligned_cols=438  Identities=32%  Similarity=0.559  Sum_probs=366.0

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHH--------HHHhCCCCCch----hhHHHHHHHHHHHHHHHhhhhhhhhhhcch
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSI--------AKELGFEGNPI----LEGLVVSIFIAGAFVGSISSGSLADKLGCR  154 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr  154 (539)
                      ......+++.+-.++....+++..+.+        .+.+|...++.    ..+.+.+++.+|.++|+++.|.++||+|||
T Consensus        11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK   90 (485)
T KOG0569|consen   11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK   90 (485)
T ss_pred             HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            345556666677888888888876644        34455333443    457789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh---hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHH
Q 009250          155 RTFQIDTIPLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF  231 (539)
Q Consensus       155 ~~l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~  231 (539)
                      ..+.++.++..++.+++.++   +++.+++++|++.|+..|........++.|..|++.||....+.+.+..+|.+++..
T Consensus        91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~  170 (485)
T KOG0569|consen   91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQV  170 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888877764   789999999999999999999999999999999999999999999999999999977


Q ss_pred             hcCC--CCCCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHh-cCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcC
Q 009250          232 LGIP--AEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK-GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDG  308 (539)
Q Consensus       232 ~~~~--l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (539)
                      ++..  +.+... |++.+....+++++..+...++||+|||+.. +++.++|++.++.+++.++++++.++..++.++++
T Consensus       171 ~~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~  249 (485)
T KOG0569|consen  171 LGLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEE  249 (485)
T ss_pred             HccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhc
Confidence            7743  334444 9999999999999999999999999999988 89999999999999999877666655444443333


Q ss_pred             C--CCcchhhhhhccCchhH-HHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHhcccccccchh
Q 009250          309 S--DLDSQWSELLEEPHSRV-AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGLRSEKYCA  383 (539)
Q Consensus       309 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~  383 (539)
                      .  +.+.+++++++++..+. ..+...+....++.+.+...+|...++++.|.+..  ..+....+...++.       .
T Consensus       250 ~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~-------t  322 (485)
T KOG0569|consen  250 LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLS-------T  322 (485)
T ss_pred             cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-------H
Confidence            2  36678899999987665 45566777788899999999999999999998755  56667777777777       9


Q ss_pred             hhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCc-cchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          384 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE-DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       384 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      +++.++.||+|||++++.+..++.+..+++.......... .+..+..+...+.+...++.|.+|+.+.+.+|++|++.|
T Consensus       323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R  402 (485)
T KOG0569|consen  323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR  402 (485)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence            9999999999999999999999988887777654332111 122233456777788888999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHHHHHHhccC
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN  533 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (539)
                      ..+.++...+..+..++-...+..+.+..|. ..|.++.+.+++..+..++.+||||+|+.+|+.++.+++
T Consensus       403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            9999999999999999999999999999997 778888999999999999999999999999998887766

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=7.8e-43  Score=354.17  Aligned_cols=421  Identities=19%  Similarity=0.220  Sum_probs=315.3

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      +..|.++++++++.+..+++...++..+|.+.+++++  +..+.+++.+++.++.+++++++|+++||+|||++++++++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl--s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI--PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            4567777888888888999999999999999999999  88889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC----
Q 009250          163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED----  238 (539)
Q Consensus       163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~----  238 (539)
                      ++++++++++++++++.++++|+++|++.|+..+...+++.|++|+++|++.++++.++..+|.++++.++..+..    
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999876543322    


Q ss_pred             ---------CcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcch----HHH---HHHHHH
Q 009250          239 ---------DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI----NKA---IEEFQL  302 (539)
Q Consensus       239 ---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~  302 (539)
                               ..+ ||+.+++.+++.++.+++.+++||+|+|+..+++.+++.+.++++.+.+..    +..   .+..+.
T Consensus       321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~  399 (742)
T TIGR01299       321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT  399 (742)
T ss_pred             hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence                     234 999999999988888888888999999999999999999999888765421    110   001110


Q ss_pred             HHHh------c-CCCC----------------cchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc---
Q 009250          303 VIKK------D-GSDL----------------DSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV---  356 (539)
Q Consensus       303 ~~~~------~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  356 (539)
                      ....      + ....                ...++++++.+..+..+++..+++...+ .++.+..+.|.+++..   
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            0000      0 0000                0134556666666666666666555444 5667777777664331   


Q ss_pred             ---------------------------------------CC-----C---------------h-----------------
Q 009250          357 ---------------------------------------GI-----T---------------D-----------------  360 (539)
Q Consensus       357 ---------------------------------------~~-----~---------------~-----------------  360 (539)
                                                             +.     .               .                 
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence                                                   00     0               0                 


Q ss_pred             -------------------------------h----HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHH
Q 009250          361 -------------------------------G----ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLG  405 (539)
Q Consensus       361 -------------------------------~----~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~  405 (539)
                                                     .    ........+..+.    .+++.+++|+++||+|||+++.++.++
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~----~i~G~il~g~L~Dr~GRr~~l~~~~~l  634 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLA----VLPGNIVSALLMDKIGRLRMLAGSMVL  634 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                                           0    0001111122222    233399999999999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 009250          406 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL  485 (539)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~  485 (539)
                      .+++.+++.+..        . ...++...++..++..+..+...++++|.+|++.|++++|+.+....+|++++|.+.+
T Consensus       635 sai~~ll~~~~~--------s-~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g  705 (742)
T TIGR01299       635 SCISCFFLSFGN--------S-ESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFG  705 (742)
T ss_pred             HHHHHHHHHHHc--------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877766532        1 1222222222233333445667788999999999999999999999999999999999


Q ss_pred             HHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCC
Q 009250          486 DLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRS  522 (539)
Q Consensus       486 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (539)
                      .+.+. +...+|++.+++.++++++.+ ++||++++.
T Consensus       706 ~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~  740 (742)
T TIGR01299       706 SFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV  740 (742)
T ss_pred             HHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence            88774 455677777777777666554 558888764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.4e-40  Score=332.84  Aligned_cols=432  Identities=29%  Similarity=0.509  Sum_probs=319.0

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHh--------CCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL--------GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT  156 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  156 (539)
                      ..+.+++.+++.+.++++...+++..|.++++|        ++  ++.+.+++.+++.++..++++++|+++||+|||++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESA--ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            455677778889999999999999999999988        55  77888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh------------hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHH
Q 009250          157 FQIDTIPLILGAIISAQA------------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL  224 (539)
Q Consensus       157 l~~~~~~~~~~~~~~~~a------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  224 (539)
                      ++.+.++++++.++++++            ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            999999999999888863            23567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHH
Q 009250          225 GIITSLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKA  296 (539)
Q Consensus       225 G~~~~~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (539)
                      |.++++.++..+.        +..+ ||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..........
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA  246 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence            9999887765432        3445 999999998888887777778999999998888888877776666544433222


Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHhc
Q 009250          297 IEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFA  374 (539)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  374 (539)
                      .++.....+++...    .+..+. ..............+.....++...++.|.+.++.+.+..  .......++..++
T Consensus       247 ~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i  321 (479)
T PRK10077        247 LQEIKHSLDHGRKT----GGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT  321 (479)
T ss_pred             HHHHHHHHHHhhhh----hhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            22221111111100    011111 0111111112222333333455566778888888776533  2333344444444


Q ss_pred             ccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccc
Q 009250          375 GLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIP  454 (539)
Q Consensus       375 ~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (539)
                      +       .++.++++||+|||+.+..+.++.+++.+++.......    ...........++..+++....+..+.++.
T Consensus       322 ~-------~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (479)
T PRK10077        322 F-------TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLS  390 (479)
T ss_pred             H-------HHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence            4       89999999999999999999988888877765432111    111222233344444444445577788999


Q ss_pred             cccCcccccchhhHHHHHHHHHHHHHHHHHHHHH------HHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHHHHH
Q 009250          455 ELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV------ETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEM  528 (539)
Q Consensus       455 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (539)
                      |.+|++.|+++.|+.+.+.+++.++++.+.+.+.      +..++...|++.+++++++.++.+++.+|+|+++.+|.++
T Consensus       391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  470 (479)
T PRK10077        391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA  470 (479)
T ss_pred             hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence            9999999999999999999999999987776544      5678888888888888888777777889999999888877


Q ss_pred             HhccCCC
Q 009250          529 SLNANST  535 (539)
Q Consensus       529 ~~~~~~~  535 (539)
                      +.+++.+
T Consensus       471 ~~~~~~~  477 (479)
T PRK10077        471 LWEPETK  477 (479)
T ss_pred             HHhhccc
Confidence            7655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.3e-40  Score=334.57  Aligned_cols=430  Identities=20%  Similarity=0.233  Sum_probs=304.8

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhC---CCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELG---FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI  159 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~  159 (539)
                      +..+..+.++.++.+.++++...++...|.+.+++.   .+.++.+.+++.+.+.+++.++++++|+++||+|||+++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~   91 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            345567788889999999999999999998877531   11245577899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc------HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhc
Q 009250          160 DTIPLILGAIISAQAHS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG  233 (539)
Q Consensus       160 ~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  233 (539)
                      +.+++.+++++++++++      ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++.++
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876      789999999999999999999999999999999999999999999999999988876


Q ss_pred             CCCCC-----------------------CcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChh-HHHHHHHHHcC
Q 009250          234 IPAED-----------------------DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLN-DAKAVIANLWG  289 (539)
Q Consensus       234 ~~l~~-----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~  289 (539)
                      ..+..                       ..+ ||+.|.+.++++++..+..+++||+|||+..+++.+ ++.+.+.+...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             HHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence            54321                       124 999999999988888888888999999998887764 45655555543


Q ss_pred             CcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc---hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhH--H-
Q 009250          290 ESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH---SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGA--L-  363 (539)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  363 (539)
                      .+..++. ++.++. +++.+..+.+++++++.+.   .++..+......+.....++....+.|.++++.+.+...  . 
T Consensus       251 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~  328 (502)
T TIGR00887       251 VKIEAEP-DEVEKA-STAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNN  328 (502)
T ss_pred             cccccCc-ccccch-hccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchh
Confidence            2211110 111100 0111111235667765422   212222222222222222334455577777777764320  0 


Q ss_pred             -----------HHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 009250          364 -----------ASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL  432 (539)
Q Consensus       364 -----------~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (539)
                                 ...+..+..+++       .++.++++||+|||+.+..+..+..++..++......     ........
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~i~g-------~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~  396 (502)
T TIGR00887       329 AYEELYKTAVGNLIIALAGTVPG-------YWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-----LSTHGFLA  396 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh-----cchhHHHH
Confidence                       011111222223       8889999999999999888887777766655543210     01111111


Q ss_pred             HHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh----------CcchhhHHHHH
Q 009250          433 GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF----------GVAPVYAGFGG  502 (539)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~----------g~~~~~~~~~~  502 (539)
                      ...+....+..+..+..+.+..|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+..          ++...|.++++
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  476 (502)
T TIGR00887       397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL  476 (502)
T ss_pred             HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHH
Confidence            22222223344556677788899999999999999999999999999999999998743          44557788887


Q ss_pred             HHHHHHHhhheeeeCCCCCCHHHHHH
Q 009250          503 VSLLSALFAYYFIVETKGRSLEEIEM  528 (539)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (539)
                      +++++.++ ++++||+++++++|+++
T Consensus       477 ~~~~~~i~-~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       477 FMFLGILF-TLLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHHH-heEeccCCCCCHHhhhC
Confidence            77777664 46779999998877643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=3.2e-39  Score=325.73  Aligned_cols=436  Identities=33%  Similarity=0.614  Sum_probs=321.5

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCC------CCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE------GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT  156 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  156 (539)
                      ++.+....++.++.++..++...+.+..+.+..+++.+      .+..+.+++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            34455566667777888899999999999999999884      447899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh---hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhc
Q 009250          157 FQIDTIPLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG  233 (539)
Q Consensus       157 l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  233 (539)
                      +..+.++++++.+++.++   .+++.++++|+++|++.+...+...+++.|++|+++|++++++++.+..+|..+++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999654   34568999999999999999999999999999999999999999999999999999999


Q ss_pred             ---CCCCCCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHH----HHHHHHh
Q 009250          234 ---IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE----FQLVIKK  306 (539)
Q Consensus       234 ---~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  306 (539)
                         .......+ ||+.|++.++..++..+..+++||+|+++..+++.+++.+...+....++.+....+    .......
T Consensus       184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (481)
T TIGR00879       184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI  262 (481)
T ss_pred             HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence               76666667 999999987777777777778999998887777766665555444332221111110    0111111


Q ss_pred             cCCCCcchhhhhhccCc--hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhh
Q 009250          307 DGSDLDSQWSELLEEPH--SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCAL  384 (539)
Q Consensus       307 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  384 (539)
                      +.+..+..++++++..+  .+..++...+..+..........++.+.+.++.+.+.. ..........+.+.++    .+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~  337 (481)
T TIGR00879       263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTD-HAFLVSIIVGAVNFAF----TF  337 (481)
T ss_pred             HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHH----HH
Confidence            11111122344443322  23444444444444444455667788888888887653 3344444444433333    89


Q ss_pred             hHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCcc--chhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          385 CASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED--FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       385 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      +.+++.||++||+.+..+.++..++.+++...........  ......+....++..+++.+..+....+..|.+|++.|
T Consensus       338 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  417 (481)
T TIGR00879       338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR  417 (481)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence            9999999999999988887777777666653221111000  01333344444555556666667777888999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHH
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE  524 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (539)
                      +++.|+.+...+++++++|.+.+.+.++.|+...|++.++++++++++.+++.+|+++++.+
T Consensus       418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            99999999999999999999999999999999999999988888888877778888776543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=320.51  Aligned_cols=443  Identities=35%  Similarity=0.627  Sum_probs=359.3

Q ss_pred             chHHHHHHHHHHHhhhhhc--ccccchhHHHHHHHhCCCC---Cc--hhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHH
Q 009250           84 PAFPHVLIASMSNFLFGYH--IGVMNGPIVSIAKELGFEG---NP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT  156 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  156 (539)
                      ..........++.+..+++  .....+....+.++...+.   +.  .+.+|+.+++.++..++++++|+++|++|||+.
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~  121 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT  121 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3344556666777777776  5667777777777543221   22  345899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          157 FQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       157 l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                      ++++.+++.++.+++++++|+++++++|+++|+|.|........+++|..|++.||...+..+....+|..++..++...
T Consensus       122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997777666


Q ss_pred             CCC-cchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcC--CcchHHHHHHHHHHH-Hhc-CCCC
Q 009250          237 EDD-PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWG--ESEINKAIEEFQLVI-KKD-GSDL  311 (539)
Q Consensus       237 ~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~-~~~~  311 (539)
                      .+. .+ ||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++  +.+.+.+.+...... .+. ....
T Consensus       202 ~~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (513)
T KOG0254|consen  202 SKVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG  280 (513)
T ss_pred             ccCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence            543 35 99999999999999988888899999999999999999999999998  334444333333111 111 1122


Q ss_pred             cchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChh-HHHHHHHHHHHhcccccccchhhhHHHHh
Q 009250          312 DSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG-ALASLLVGVTNFAGLRSEKYCALCASYLM  390 (539)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~g~l~  390 (539)
                      +..+.++++....++..+...+..+.++++++...+|.+.+++..+.... .....+.++..+.+       ..++.++.
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~-------t~~~~~lv  353 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLG-------TLVATYLV  353 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            22466666655666677788888899999999999999999999988865 56666777777777       88889999


Q ss_pred             hhcCCchhhHhhHHHHHHHHHHHHHHhcCCCC----ccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchh
Q 009250          391 DKEGRQKLLIGSYLGMAISMLLVVGATSLPLD----EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIM  466 (539)
Q Consensus       391 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  466 (539)
                      ||+|||+.++.+...+.++.++++........    .....+..+...+++...+..+..++.+.+.+|.+|.+.|+.+.
T Consensus       354 d~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~  433 (513)
T KOG0254|consen  354 DRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGA  433 (513)
T ss_pred             HHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhH
Confidence            99999999999999999999888876543221    22345667777788888888999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH-hhheeeeCCCCCCHHHHHHHhccCC
Q 009250          467 GFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL-FAYYFIVETKGRSLEEIEMSLNANS  534 (539)
Q Consensus       467 g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  534 (539)
                      ++......+...+....+..+.+..+....|..+++++.+... ..+.+.||+|+++++++++.+++..
T Consensus       434 s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~  502 (513)
T KOG0254|consen  434 SLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI  502 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence            9999999998888877777766665545667777777777777 7888999999999999998776653

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-39  Score=294.13  Aligned_cols=398  Identities=17%  Similarity=0.153  Sum_probs=298.3

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      +.|+.++..+.+++...++.+..++...|.+.++.++  |..|.|++.+++.++|.++..+.|.++||.++|+.+..+++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l--sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL--SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            3456778899999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhc--CCCCCCc
Q 009250          163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG--IPAEDDP  240 (539)
Q Consensus       163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~l~~~~  240 (539)
                      +.++.+++++++++.+.+.++-+++|..+|.-.|.+...+..|++++|||+..++++++.++|..+.+++.  +++..+.
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988  7887777


Q ss_pred             chhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCC-----cch
Q 009250          241 HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDL-----DSQ  314 (539)
Q Consensus       241 ~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  314 (539)
                      + ||..|++.++++++..+..++ .+|+|+-.                 +....++..++..+..+++++.+     ..-
T Consensus       183 ~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~-----------------GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~  244 (448)
T COG2271         183 G-WRAAFYFPGIIAIIVALILLFLLRDRPQSE-----------------GLPPIEEYRGDPLEIYEEEKENEGLTAWQIF  244 (448)
T ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------------CCCCHHHhhcCchhhhhhhccCCCccHHHHH
Confidence            7 999999999999888766654 67777411                 11111111111111111111111     122


Q ss_pred             hhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc-
Q 009250          315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE-  393 (539)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-  393 (539)
                      ++.+++||..|.+.+...+...    .-..+..+.|.|+.+...-+...+...++...+++..|    .+++||++||+ 
T Consensus       245 ~~YVL~Nk~iW~la~a~vfvYi----vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G----~Ll~GwlSDklf  316 (448)
T COG2271         245 VKYVLKNKLIWLLALANVFVYV----VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPG----TLLAGWLSDKLF  316 (448)
T ss_pred             HHHHHcChHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhc
Confidence            3445677666655444443333    44556777788776665444446666677777777555    99999999996 


Q ss_pred             -CCchhhHhhHHHHH-HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHH-HhcccccccccccccccCcccccchhhHHH
Q 009250          394 -GRQKLLIGSYLGMA-ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT-FAIGAGPVTGLVIPELSSNRTRGKIMGFSF  470 (539)
Q Consensus       394 -g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~  470 (539)
                       |||....+.+.+.. ++++.+...+        +....+...+++..+ +-.|-.-+......|..|++..|++.|+..
T Consensus       317 kgrR~p~~~i~~~~i~~~~~~~w~~~--------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~G  388 (448)
T COG2271         317 KGRRGPMALIFMLLITASLVLYWLAP--------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVG  388 (448)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCC--------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhh
Confidence             56665544333333 3333322211        122233333333333 333334444566779999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeee
Q 009250          471 SVHWV-CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV  516 (539)
Q Consensus       471 ~~~~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  516 (539)
                      .+.++ |.+.+....|.+.|.+||...|.+..+.++++.+++....+
T Consensus       389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            99999 88889999999999999999999888888887776655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-37  Score=287.64  Aligned_cols=373  Identities=20%  Similarity=0.229  Sum_probs=292.3

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      ..+..++.+.++.|..+....+....+|++.+|+|+  +..+.|++.|.|.+++.++.++...+.||+.||++++..+.+
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~v--s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l   87 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGV--SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL   87 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            345568888999999999999999999999999999  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      +.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|.++|.++.+..| |
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-W  166 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-W  166 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccC
Q 009250          244 RTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP  322 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (539)
                      |+.|++.+.++++..+..+. +|  |+.                                 ..++...+..+..+.++++
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~---------------------------------~~~~~~~~~~~~~~~l~~p  211 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSE---------------------------------ISGSLPGPLRTLLRLLRRP  211 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--Ccc---------------------------------CCCCCCcchhHHHHHhcCc
Confidence            99999999999988776654 66  210                                 0011111222355667777


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhH
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLI  400 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~  400 (539)
                      ..+..++...+.+..+   +..++|.-|.+.+..+++..  ....+.+++..++|       ..++|++.|| +.|+.+.
T Consensus       212 ~v~~~l~~t~l~~~g~---F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~G-------n~~gGrl~dr-~~~~~l~  280 (394)
T COG2814         212 GVLLGLLATFLFMTGH---FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIG-------NLLGGRLADR-GPRRALI  280 (394)
T ss_pred             hHHHHHHHHHHHHcch---hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHH-------HHHHhhhccc-cchhHHH
Confidence            7776666555554433   33455555666666666544  23334445555555       9999999999 8888888


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc-cccccccccccCcccccchhhHHHHHHHHHHHH
Q 009250          401 GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL  479 (539)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~  479 (539)
                      ....+..+..+.+.+..         ++........+..++..... ........+.. ++.++.+.+++....|+|..+
T Consensus       281 ~~~~l~a~~~l~l~~~~---------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~  350 (394)
T COG2814         281 AALLLLALALLALTFTG---------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIAL  350 (394)
T ss_pred             HHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHH
Confidence            88787877777766633         22222222333233333222 22223344533 456999999999999999999


Q ss_pred             HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheee
Q 009250          480 VGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI  515 (539)
Q Consensus       480 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  515 (539)
                      |..+.|.+.|+.|+....++.+.+.+++.++.+...
T Consensus       351 GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         351 GAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888888777664443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=2.1e-37  Score=310.19  Aligned_cols=399  Identities=16%  Similarity=0.163  Sum_probs=263.4

Q ss_pred             HHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchh--hHH--HHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHH
Q 009250           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPIL--EGL--VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT  161 (539)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  161 (539)
                      ++.+....++.+++++|..+++...|.+.++|+.+.++..  .+.  +.++.++++.++++++|+++||+|||+++.+++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3457777889999999999999999999999976434421  222  257888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcHHH--------HHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhc
Q 009250          162 IPLILGAIISAQAHSLDE--------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG  233 (539)
Q Consensus       162 ~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  233 (539)
                      ++++++++++++++|+++        ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        888999999999999999999999999999999999999988888888887554


Q ss_pred             CCC----C----CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 009250          234 IPA----E----DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIK  305 (539)
Q Consensus       234 ~~l----~----~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (539)
                      ..+    .    ...+ ||+.|++.+++.++..++...+||+|+|...+++.++..                      .+
T Consensus       175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------------------~~  231 (490)
T PRK10642        175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------------------RE  231 (490)
T ss_pred             HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------------------cc
Confidence            332    1    2456 999999988777766666667899998653321111000                      00


Q ss_pred             hcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhh
Q 009250          306 KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCAL  384 (539)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  384 (539)
                      ...+..+.+++++++. ..+.........++ ....++....+.|.++++ .+.+.. ..........+...    ++.+
T Consensus       232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~-~~~~~~~~~~~~~~----~~~~  304 (490)
T PRK10642        232 GLQDGPKVSFKEIATK-HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSED-HGVLIIIAIMIGML----FVQP  304 (490)
T ss_pred             cccccccCCHHHHHHH-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH----HHHH
Confidence            0001112245555543 22222222222222 222344555677777754 465543 23333333333332    2288


Q ss_pred             hHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccc
Q 009250          385 CASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGK  464 (539)
Q Consensus       385 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  464 (539)
                      +.|+++||+|||+.+..+.++..+....+.....     ...........++...+.+.+ ......+..|.+|++.|++
T Consensus       305 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg~  378 (490)
T PRK10642        305 VMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-----SNVIGLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRYS  378 (490)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccchH
Confidence            9999999999999887776544333222111110     001111122222222222211 2234456778999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhheeeeCCCCC
Q 009250          465 IMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVETKGR  521 (539)
Q Consensus       465 ~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (539)
                      +.|+.+.+..+++.++|.+.+++.+..+ +..++++..+.+++..+.. ++.||++++
T Consensus       379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~  435 (490)
T PRK10642        379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence            9998777788888999999999988765 4545554444444444433 445776543

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.9e-38  Score=319.38  Aligned_cols=391  Identities=23%  Similarity=0.291  Sum_probs=289.2

Q ss_pred             hhHHHHHHHhCCC-CCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 009250          108 GPIVSIAKELGFE-GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (539)
Q Consensus       108 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  186 (539)
                      +..+.+.+|||++ .++.+.+++.+++.++..++++++|+++||+|||++++++.++.+++++++++++|++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5678899999992 117888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccccc
Q 009250          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (539)
Q Consensus       187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  266 (539)
                      .|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+    ||+.|++.+++.++..+..+++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999876643    999999999998888877788999


Q ss_pred             chHHHHhcCChhHHHHHHHHHcCCcchH--HHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHH
Q 009250          267 SPRWLCKGGMLNDAKAVIANLWGESEIN--KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGING  344 (539)
Q Consensus       267 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (539)
                      +|+|+..+++.+++.+..++..+.+...  .+........+.+.+..+..++++++++..+...+.....++...    .
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~  341 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTA----F  341 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHH----H
Confidence            9999999999988887766554322111  111111101111111123467788888877766554443333222    1


Q ss_pred             HHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCcc
Q 009250          345 VLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED  424 (539)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (539)
                      ..+..+.+....+.+. .....+.++..+++       .++.+++.||+|||+.+.++.++.+++++++.....      
T Consensus       342 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~-------~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~------  407 (505)
T TIGR00898       342 SYYGLVLDLGNLGGNI-YLDLFISGLVELPA-------KLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV------  407 (505)
T ss_pred             HHHHHhccccccCCCh-HHHHHHHHHHHHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC------
Confidence            2222333333344332 24444555555555       899999999999999999888888877766655321      


Q ss_pred             chhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Q 009250          425 FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS  504 (539)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~  504 (539)
                       ..........+...+...+..+..+.+..|.+|++.|+++.|+.+.+..+|++++|.+.+ + +..++..++.+++++.
T Consensus       408 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~  484 (505)
T TIGR00898       408 -DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLA  484 (505)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHH
Confidence             111122222222222222234556788899999999999999999999999999999998 4 4456667777777777


Q ss_pred             HHHHHhhheeeeCCCCCCHH
Q 009250          505 LLSALFAYYFIVETKGRSLE  524 (539)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~  524 (539)
                      +++.++. +++||+++++++
T Consensus       485 ~~~~~~~-~~lpet~~~~l~  503 (505)
T TIGR00898       485 LLAGILT-LFLPETKGVPLP  503 (505)
T ss_pred             HHHHHHH-HcCcCCCCCCCC
Confidence            7776654 567888877653

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=5e-36  Score=296.73  Aligned_cols=376  Identities=16%  Similarity=0.207  Sum_probs=270.6

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      .+++.+..+.++.+.++++.....+..|.+.+++|+  ++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL--TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            445567788888899999999999999999999999  888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      .++++++++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+..+ |
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w  171 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-W  171 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888888777 9


Q ss_pred             HHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc
Q 009250          244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH  323 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (539)
                      |+.|++.++..++...+....||++++..++.+            .+++          ..+...+..+..++++++++.
T Consensus       172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~~  229 (426)
T PRK12307        172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKGK----------HSQSAWSVFSLSMKGLFNRAQ  229 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------cccc----------ccccchhhhhHHHHHHHhhch
Confidence            999998655444333332234555432211000            0000          000000011124566777666


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhH
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSY  403 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~  403 (539)
                      .+.........+. .+.....+..+.|.++++.+.+.. ..+....+..+.+.++    .++.|++.||++||+.+..+.
T Consensus       230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~g----~~~~g~l~dr~~~~~~~~~~~  303 (426)
T PRK12307        230 FPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTG-VVSNLMTAAAFGTVLG----NIVWGLCADRIGLKKTFSIGL  303 (426)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhccHHHHHHHH
Confidence            6544433322222 222233345567777777766543 3444444444444333    999999999999999888777


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH-hcccccccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      ++..+..+.+....        ...........+..++ ..+..+....++.|.+|++.||++.|+.+.+.++++.++|.
T Consensus       304 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~  375 (426)
T PRK12307        304 LMSFLFIFPLFRIP--------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSM  375 (426)
T ss_pred             HHHHHHHHHHHHHc--------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHH
Confidence            76655544443311        1111122222222222 22333444566789999999999999999999999999999


Q ss_pred             HHHHHHHHhCcchhhH
Q 009250          483 FFLDLVETFGVAPVYA  498 (539)
Q Consensus       483 ~~~~l~~~~g~~~~~~  498 (539)
                      +.|.+.+..|+.....
T Consensus       376 ~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        376 AATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHHcccHHHHHH
Confidence            9999999988655433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=261.57  Aligned_cols=417  Identities=18%  Similarity=0.219  Sum_probs=320.3

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      +..|.......++...+.+......-+.|.+.+.+|.  +..|..++......|..+++..+|.++|++|||+.+.+..+
T Consensus        74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            4456667777888888887777777888999999998  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcch
Q 009250          163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (539)
Q Consensus       163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~  242 (539)
                      ..++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...+......+.| 
T Consensus       152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-  228 (528)
T KOG0253|consen  152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-  228 (528)
T ss_pred             HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-
Confidence            9999999999999999999999999999998 999999999999999999887777 9999999999999988888888 


Q ss_pred             hHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchH---------------HHHHHHHHHHHhc
Q 009250          243 WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN---------------KAIEEFQLVIKKD  307 (539)
Q Consensus       243 wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  307 (539)
                      |||.......+..+.+.+.+++||+|||+..+++.++|.+.+.++.+.+..+               ++..+..+...+.
T Consensus       229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a  308 (528)
T KOG0253|consen  229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSA  308 (528)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcc
Confidence            9999999998888888889999999999999999999998887775443211               1111111111122


Q ss_pred             CCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcC--------------------CC--hhHHHH
Q 009250          308 GSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG--------------------IT--DGALAS  365 (539)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~  365 (539)
                      .++......+++..+..+..++....++...+. ++........+++...                    .+  ....-.
T Consensus       309 ~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdl  387 (528)
T KOG0253|consen  309 AKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDL  387 (528)
T ss_pred             ccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHH
Confidence            233344555666655555555555444443333 4344444433333221                    00  112334


Q ss_pred             HHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc
Q 009250          366 LLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA  445 (539)
Q Consensus       366 ~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (539)
                      ++.....++|       .++.+++.||+|||+.+...+++.++..+++....        ......+..+..-.+ ..+.
T Consensus       388 litslaefPG-------lLIt~~iverlGRKkTMal~l~~f~iflfll~~c~--------~rn~~tvllf~araf-isg~  451 (528)
T KOG0253|consen  388 LITSLAEFPG-------LLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK--------TRNAYTVLLFTARAF-ISGA  451 (528)
T ss_pred             HHHHHhhCCc-------hhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHH-Hhch
Confidence            5666777777       99999999999999999999988888777766532        222233333333333 3344


Q ss_pred             ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCH
Q 009250          446 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSL  523 (539)
Q Consensus       446 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (539)
                      ....+.|..|++|+..|+++.|....+..+|+++.|.++  +........+..+++++++++++...++--|+|+|..
T Consensus       452 fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  452 FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            446789999999999999999999999999999999998  5555566677888899999998888777778988753

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=7.7e-37  Score=304.66  Aligned_cols=396  Identities=13%  Similarity=0.066  Sum_probs=268.3

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      .+.++.++.+++++..+++..+++..|.+.+|+|+  +..+.|++.+++.+++.+++++.|+++||+|||+++..+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGL--STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            45567788888888889999999999999999999  8889999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHh-----hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          165 ILGAIISAQ-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       165 ~~~~~~~~~-----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      ++++++.++     ++|++.++++|+++|++.+...+...+++.||+|+++||++++++..+.++|.++++++..++...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            887776665     589999999999999999999999999999999999999999999999999999999887655443


Q ss_pred             c--chhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcch-h
Q 009250          240 P--HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ-W  315 (539)
Q Consensus       240 ~--~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  315 (539)
                      .  ++||..|.+.+++.++..+..++ .+++|+..   +..++ ++.   .. +....+     +...++++...... .
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~---~~-~~~~~~-----~~~~~~~~~~~~~~~~  251 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI---FG-EPISEE-----DKETESTDMTKWQIFV  251 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc---cc-Cccchh-----hhccccccCcHHHHHH
Confidence            1  23999999888887766555444 46665321   10000 000   00 000000     00000000000011 1


Q ss_pred             hhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC
Q 009250          316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG  394 (539)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g  394 (539)
                      +..++++..+...+...+    ....+.....+.|.++++ .+.+.. ..+.......+.+.++    .++.|+++||++
T Consensus       252 ~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~p~yl~~~~g~s~~-~a~~~~~~~~~~~~ig----~~~~G~lsDr~g  322 (467)
T PRK09556        252 EYVLKNPVIWLLCFANIF----LYIVRIGIDNWSPVYAFQELGFSKE-DAINTFTLFEIGALVG----SLLWGWLSDLAN  322 (467)
T ss_pred             HHHHcChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHC
Confidence            224555555443332222    222344466677877754 565543 4444444444444333    999999999999


Q ss_pred             CchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH-hcccccccccccccccCcccccchhhHHHHHH
Q 009250          395 RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH  473 (539)
Q Consensus       395 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  473 (539)
                      ||+.+........++...+....        ...........+..++ ..+..........|.+|++.+|++.|+.+...
T Consensus       323 ~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g  394 (467)
T PRK09556        323 GRRALVACIALALIIFTLGVYQH--------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFA  394 (467)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence            98876655443333322222211        1111122122222222 12222222345669999999999999999999


Q ss_pred             HH-HHHHHHHHHHHHHH------------HhCcchhhHHHHHHHHHHHHhhh
Q 009250          474 WV-CNFLVGLFFLDLVE------------TFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       474 ~~-g~~~~~~~~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      ++ |++++|.+.|.+.|            ..||...|.+..++.+++.++.+
T Consensus       395 ~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        395 YLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            97 77999999999999            57888889888777777665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=1.7e-42  Score=345.42  Aligned_cols=431  Identities=34%  Similarity=0.577  Sum_probs=330.7

Q ss_pred             HHHHHhhhhhcccccchhHHHHH--HHhCCCCC-------chhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           92 ASMSNFLFGYHIGVMNGPIVSIA--KELGFEGN-------PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      ..++.+..+++...++...+...  .+++.+.+       +.+.+++.+...+|..+|++++|.++||+|||+.+.++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            34556788888888777766554  33333222       2356899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh---cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          163 PLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       163 ~~~~~~~~~~~a~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      +..+++++.++++   |++.++++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++......
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999999998887665332


Q ss_pred             cc--hhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhh
Q 009250          240 PH--WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE  317 (539)
Q Consensus       240 ~~--~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (539)
                      .+  .||+.+++.++++++..+...++||+|+|+..++|.+++++.+++.++.+..+++.++..++.++.+ +.+..+++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  243 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ-ESKASWRD  243 (451)
T ss_pred             cccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc-ccceeeee
Confidence            21  3999999999999888888889999999999999999999999887665444333333222222211 11256777


Q ss_pred             hhccCc-hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCc
Q 009250          318 LLEEPH-SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQ  396 (539)
Q Consensus       318 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r  396 (539)
                      +++++. .++......+..+..+.+.....++.+.+++..+.+..........+..+++       .+++.++.||+|||
T Consensus       244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~GRr  316 (451)
T PF00083_consen  244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLG-------TLLAIFLIDRFGRR  316 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccc
Confidence            887765 3444444555555556666677778888888777766533333444444444       77778999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHH-HhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHH
Q 009250          397 KLLIGSYLGMAISMLLVVG-ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV  475 (539)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  475 (539)
                      ++++.+..+..++.+.+.. .......+.......+....+....+..+..+..+.+..|.+|++.|+++.|+...++++
T Consensus       317 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i  396 (451)
T PF00083_consen  317 KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI  396 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence            9999888888877776651 111110000112333344444445566677788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHHHHHHh
Q 009250          476 CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSL  530 (539)
Q Consensus       476 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (539)
                      ++++++.+...+.+..+....+.+.++++++..++.++++||+|+++++|+++++
T Consensus       397 ~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  397 GGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            9999999999888887766778888888888888888999999999999998753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=9.4e-36  Score=290.63  Aligned_cols=373  Identities=17%  Similarity=0.162  Sum_probs=265.4

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      +|..++.+.++.++.........+.+|.+.+++|.  ++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHM--QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            45555666666566545545566678999999999  8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr  244 (539)
                      +++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+.++|..++|++++.+.+..+ ||
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~  163 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WR  163 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888777 99


Q ss_pred             HHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc
Q 009250          245 TMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH  323 (539)
Q Consensus       245 ~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (539)
                      +.|++.+++.++..+..+. +||+|+    + +                                +......++.++++.
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~--------------------------------~~~~~~~~~~~~~~~  206 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPS----E-H--------------------------------SGSLKSLPLLFRRPA  206 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC----C-C--------------------------------cchHHHHHHHHhCcH
Confidence            9999998887776554433 454431    0 0                                000112345666665


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhH
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSY  403 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~  403 (539)
                      .+.......+....   .+....+..+++.+..+.+.. ..+.......+.+.++    +++.+++.||+++|... .+.
T Consensus       207 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~g~s~~-~~~~~~~~~~~~~~~g----~~~~g~l~dr~~~~~~~-~~~  277 (390)
T PRK03545        207 LVSLYLLTVVVVTA---HFTAYSYIEPFVQQVAGLSEN-FATLLLLLFGGAGIIG----SVLFSRLGNRHPSGFLL-IAI  277 (390)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHH----HHHHHHHhhccchhHHH-HHH
Confidence            55433332222221   122223333433333455433 4444444444444333    99999999999987643 344


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF  483 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  483 (539)
                      .+..++...+....       .+.+.......+.+.+. ....+.....+.+..| +.++++.|+.+...++|..+||.+
T Consensus       278 ~~~~~~~~~l~~~~-------~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~  348 (390)
T PRK03545        278 ALLLVCLLLLLPAA-------NSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL  348 (390)
T ss_pred             HHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433332211       01122222222222222 2233444456667766 468999999999999999999999


Q ss_pred             HHHHHHHhCcchhhHHHHHHHHHHHHhhheee
Q 009250          484 FLDLVETFGVAPVYAGFGGVSLLSALFAYYFI  515 (539)
Q Consensus       484 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  515 (539)
                      .|.+.++.|++..++..+.+.+++.++.+...
T Consensus       349 ~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        349 GNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999998888888777665544

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.8e-36  Score=299.14  Aligned_cols=401  Identities=15%  Similarity=0.121  Sum_probs=273.2

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ++..+....++.++..++...++..+|.+.+++|+  +..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGL--SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            44556667777788888888889999999999999  8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr  244 (539)
                      +++++++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+.++|..+++.+++.+.+..+ ||
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~  177 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WR  177 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888877 99


Q ss_pred             HHHHhhHHHHHHHHH-HhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchh-hhhhccC
Q 009250          245 TMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW-SELLEEP  322 (539)
Q Consensus       245 ~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  322 (539)
                      +.|++.+++.++..+ ..++++|+|++...+...++..           +.   ++...+.+.+..+.+..+ ...++++
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DA---LELAQQQEGAGLSRKEILTKYVLLNP  243 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------cc---cccchhccccCCChhhhHHHHHhcCh
Confidence            999998887665543 3445677764321110000000           00   000000000000000111 1133444


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc--CCchhh
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE--GRQKLL  399 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~--g~r~~~  399 (539)
                      ..+.......    ........+..+.|.+++ +.+.+.. ..+.......+.+.++    +++.|+++||+  ++|+..
T Consensus       244 ~~~~~~~~~~----~~~~~~~~~~~~~p~~l~~~~g~s~~-~a~~~~~~~~~~~~~g----~~~~g~l~dr~~~~~r~~~  314 (434)
T PRK11663        244 YIWLLSFSYV----LVYVVRAAINDWGNLYMSETLGVDLV-TANSAVSMFELGGFIG----ALVAGWGSDKLFNGNRGPM  314 (434)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHH----HHHHhhhHHHhccCCccHH
Confidence            4333322222    222234445556777774 4465543 4445555555554444    99999999998  333332


Q ss_pred             -HhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCcccccchhhHHHHHHHHHH
Q 009250          400 -IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN  477 (539)
Q Consensus       400 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  477 (539)
                       ....+...+....+.....       .+..... ..++..++. .+..........|.+|++.++++.|+.+++.++|+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  386 (434)
T PRK11663        315 NLIFAAGILLSVGSLWLMPF-------ASYVMQA-ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGA  386 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccc-------ccHHHHH-HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHH
Confidence             2222222222222211110       1111111 122222221 11222233456799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCC
Q 009250          478 FLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK  519 (539)
Q Consensus       478 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (539)
                      +++|.+.|.+.|..|+...|.+.+++.+++.+..+...++++
T Consensus       387 ~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK11663        387 ALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA  428 (434)
T ss_pred             HHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999888888887766654444443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.2e-35  Score=290.16  Aligned_cols=380  Identities=15%  Similarity=0.142  Sum_probs=247.3

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCC-CCchhhHHHHHHH---HHHHHHHHhhhhhhhhhhcchHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIF---IAGAFVGSISSGSLADKLGCRRTFQI  159 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~---~~~~~~~~~~~g~l~dr~Grr~~l~~  159 (539)
                      +++..+...+++.+++.+|...++...|.+.+|++.+ .+..+.+...+++   +++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4555677778889999999999999999999999631 1444444444444   44555999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcHH--------HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHH
Q 009250          160 DTIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF  231 (539)
Q Consensus       160 ~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~  231 (539)
                      +.++++++++++++++++.        .++++|+++|++.|..++...+++.|++|+++|+++.++.+.+...|.++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875        58899999999999999999999999999999999999998888888888876


Q ss_pred             hcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHH
Q 009250          232 LGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV  303 (539)
Q Consensus       232 ~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (539)
                      ++..+.        ...+ ||+.|++.+++.++...+....||+|++..                              .
T Consensus       179 ~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------------------------------~  227 (432)
T PRK10406        179 VVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------------------------------R  227 (432)
T ss_pred             HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------------------------------h
Confidence            654332        1345 999999988888776655555677653210                              0


Q ss_pred             HHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccch
Q 009250          304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYC  382 (539)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~  382 (539)
                      .++    ++.+++++++++..+...+.   ..+.....++....+.|.++++ .+.+.. ..+....+..+.+.++    
T Consensus       228 ~~~----~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~lp~~l~~~~g~s~~-~~~~~~~i~~~~~~i~----  295 (432)
T PRK10406        228 ALK----EAGSLKGLWRNRRAFIMVLG---FTAAGSLCFYTFTTYMQKYLVNTAGMHAN-VASGIMTAALFVFMLI----  295 (432)
T ss_pred             hhc----ccccHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----
Confidence            000    11245566665443322221   1221122233445566666654 565543 3334444433333222    


Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      .++.|+++||++||+.+....++..+....+......     .......+..............+....+.+|.+|++.|
T Consensus       296 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r  370 (432)
T PRK10406        296 QPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-----VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVR  370 (432)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence            7888999999999987766555433332222111100     01111111111111111111223455678899999999


Q ss_pred             cchhhHHHHHHHH-HHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhh
Q 009250          463 GKIMGFSFSVHWV-CNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       463 ~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~  512 (539)
                      +++.|+.+.+.++ .+...|.+.+. .+..| +...++..+++.+++.+..+
T Consensus       371 ~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        371 ALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             chhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999988775 34457777774 45566 44445555555555544443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=2.3e-35  Score=287.21  Aligned_cols=378  Identities=13%  Similarity=0.089  Sum_probs=266.4

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      .|.....++++.+..... ...++.+|.+++|+|+  |..+.|++.+.+.+++.+++++.|+++||+|||+++..+..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~   84 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGM--SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLI   84 (393)
T ss_pred             HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHH
Confidence            344455555544443333 6778999999999999  8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr  244 (539)
                      +++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.++..+||
T Consensus        85 ~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~  163 (393)
T PRK09705         85 AVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY  163 (393)
T ss_pred             HHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999999999999999999999999997 779999999999999999999999988877653399


Q ss_pred             HHHHhhHHHHHHHHHHhcccc-cchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc
Q 009250          245 TMLYIASLPGFILALGMQFTV-ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH  323 (539)
Q Consensus       245 ~~f~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (539)
                      +.+.+.++..++..+..+... +.|+                                   +++++  +....+.++++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~--~~~~~~~l~~~~  206 (393)
T PRK09705        164 QTLAWWALPAVVALFAWWWQSAREVA-----------------------------------SSHKT--TTTPVRVVFTPR  206 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc-----------------------------------cccCC--CcCCcccccCHh
Confidence            998776665554433332221 1110                                   00000  011122333443


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhH
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSY  403 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~  403 (539)
                      .+...+..   .+ ....+.....+.|.++++.+.+.. ..+....+..+.+.++    +++.+++.||++||+....+.
T Consensus       207 ~~~l~~~~---~~-~~~~~~~~~~~lp~~l~~~g~s~~-~ag~~~~~~~i~~i~g----~~~~g~l~~r~~~~~~~~~~~  277 (393)
T PRK09705        207 AWTLGVYF---GL-INGGYASLIAWLPAFYIEIGASAQ-YSGSLLALMTLGQAAG----ALLMPAMARHQDRRKLLMLAL  277 (393)
T ss_pred             HHHHHHHH---HH-HHHHHHHHHHHHHHHHHHcCCChh-hhhHHHHHHHHHHHHH----HHHHHHHHhhccchHHHHHHH
Confidence            33322222   11 222344555677777777766543 4444444444444333    999999999999999888887


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccccccccc-CcccccchhhHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELS-SNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      .+..++..++....        ..... ....+.+.+.+. ..+.......+.. |++.+++..|+.+...++++.++|.
T Consensus       278 ~l~~~~~~~~~~~~--------~~~~~-~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~  347 (393)
T PRK09705        278 VLQLVGFCGFIWLP--------LQLPV-LWAMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPW  347 (393)
T ss_pred             HHHHHHHHHHHHcc--------chHHH-HHHHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666655543311        11111 112222222222 2343444445555 4678999999999999999999999


Q ss_pred             HHHHHHHHhC-cchhhHHHHHHHHHHHHhhheeeeCCCCCC
Q 009250          483 FFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVETKGRS  522 (539)
Q Consensus       483 ~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (539)
                      +.|++.|..| +...|.+.+.++++..+..+.+.+|+++|.
T Consensus       348 ~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        348 FSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            9999999987 666677777777776666667778877664

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=5.4e-36  Score=293.13  Aligned_cols=395  Identities=14%  Similarity=0.107  Sum_probs=267.9

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      .+|+.+.++++.+++++++....+...|.+.+|+|+  +..+.|++.+++.+++.+++++.|+++||+|||+++..++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL--SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            357788888899999999999999999999999999  889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC-----
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-----  238 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-----  238 (539)
                      ++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++++++++.+     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887653     


Q ss_pred             -CcchhHHHHHhhHHHHHHHHHH-hcccccchHHHHhcCChhHHHH-HHHHHcCCcchHHHHHHHHHHHHhcCCCCcchh
Q 009250          239 -DPHWWRTMLYIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKA-VIANLWGESEINKAIEEFQLVIKKDGSDLDSQW  315 (539)
Q Consensus       239 -~~~~wr~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (539)
                       ..+ ||+.|++.++++++..++ .++++|+|+..  +...++.++ ..+..+......++   .+...+++....+..+
T Consensus       163 ~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  236 (412)
T TIGR02332       163 ALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQ---PEGAFAHAAMPQRSML  236 (412)
T ss_pred             Cccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccc---cccccccccccHHHHH
Confidence             245 999999988887766544 45578877420  000011111 11111000000000   0000000000001123


Q ss_pred             hhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCC-ChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC
Q 009250          316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI-TDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG  394 (539)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g  394 (539)
                      ++++ ++..+   . ..+..+.....+..+..+.|.++++.+. .+....+.......+.+.++    .++.|+++||++
T Consensus       237 ~~~~-~~~~~---~-~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g----~l~~g~l~dr~~  307 (412)
T TIGR02332       237 REIF-TPAIM---L-YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFG----MIWWSRHSDRLK  307 (412)
T ss_pred             HHhc-ChHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHH----HHHHHHHhcccC
Confidence            3333 22222   2 2222223333455667788888887532 22234444444444444333    999999999999


Q ss_pred             Cchh-hHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHH
Q 009250          395 RQKL-LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH  473 (539)
Q Consensus       395 ~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  473 (539)
                      +|+. .....+...++. ++....  .     ..........+...+.. ...+.......|.+|++.|+++.|+.+...
T Consensus       308 ~r~~~~~~~~~~~~~~~-~~~~~~--~-----~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~  378 (412)
T TIGR02332       308 ERKHHTALPYLFAAAGW-LLASAT--D-----HNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATG  378 (412)
T ss_pred             ccHHHHHHHHHHHHHHH-HHHHhc--C-----CHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhh
Confidence            7774 333333333332 221110  0     11111111111111111 112333345567889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhC-cchhhHHHHHHH
Q 009250          474 WVCNFLVGLFFLDLVETFG-VAPVYAGFGGVS  504 (539)
Q Consensus       474 ~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~  504 (539)
                      ++|++++|.+.|.+.+..| |...+++.+++.
T Consensus       379 ~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       379 NIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             hhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            9999999999999999876 887777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=3.1e-35  Score=289.18  Aligned_cols=381  Identities=20%  Similarity=0.244  Sum_probs=274.3

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      +++|..+.+.++..++++++....++..|.+.+++|.  ++.+.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            3677788888899999999999999999999999999  88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcch
Q 009250          163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (539)
Q Consensus       163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~  242 (539)
                      +.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+..+ 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-  167 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-  167 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988887777 


Q ss_pred             hHHHHHhhHHHHHHHHHH-hcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhcc
Q 009250          243 WRTMLYIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE  321 (539)
Q Consensus       243 wr~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (539)
                      ||+.|++.++..++..+. ..++||+|++..++.+.++.                               +...+..++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~  216 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-------------------------------APVLRALFGE  216 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-------------------------------hhhHHHHhhh
Confidence            999999987766655543 34578876543221100000                               0001111111


Q ss_pred             CchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh
Q 009250          322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG  401 (539)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~  401 (539)
                      +..+........ .+...........+.|.+.++.+.+.. ..+.......+.+.++    .++.|++.||++||+.+..
T Consensus       217 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~g~~~~~~~  290 (406)
T PRK11551        217 GRATATLLLWIS-YFFTLIVLYFLLNWLPSLLVGQGLSRS-QAGLVQIAFNIGGALG----SLLIGALMDRLRPRRVVLL  290 (406)
T ss_pred             hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCChh-hhhHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHH
Confidence            111111111111 111122233445567788887776544 4444444444444333    9999999999999998877


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHH
Q 009250          402 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG  481 (539)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~  481 (539)
                      +.+...++.+.+...         .+........++......+..+...++..|.+|++.|+++.|+.+.+.+++..++|
T Consensus       291 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~  361 (406)
T PRK11551        291 IYAGILASLAALAAA---------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGP  361 (406)
T ss_pred             HHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHh
Confidence            666555554444331         11111222222222222233455667888999999999999999999999999999


Q ss_pred             HHHHHHHHHhCc-chhhHHHHHHHHHHHHhhh
Q 009250          482 LFFLDLVETFGV-APVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       482 ~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~  512 (539)
                      .+.|.+.++.+. ...+.......+++.++.+
T Consensus       362 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        362 LLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             hhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999987553 3444444444444444433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=8.5e-35  Score=286.58  Aligned_cols=388  Identities=16%  Similarity=0.184  Sum_probs=269.0

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      +++|+.+..+.++.+.++++....++..|.+.+++|+  ++.+.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL--TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4677888899999999999999999999999999999  88899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc-
Q 009250          163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-  241 (539)
Q Consensus       163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-  241 (539)
                      +.++++++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887765432 


Q ss_pred             hhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhcc
Q 009250          242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE  321 (539)
Q Consensus       242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (539)
                      +||+.|++.++..++..+.....||++++...+.+.++..+..++..+.....          +...++.....+..  .
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--~  233 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI----------ANIVMTLAAAMVQS--A  233 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh----------hhhhhhhhHHhhhh--h
Confidence            39999998777766666666667887654432222111111111111000000          00000000001110  1


Q ss_pred             CchhHHH-HHHHHHHHhhhhhhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhh
Q 009250          322 PHSRVAF-IGGALFLLQQFAGINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLL  399 (539)
Q Consensus       322 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~  399 (539)
                      ...+... .......+.... ......+.|.++ ++.+.+.. ..+.+.....+.+.++    .++.+++.||++||+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~~g----~~~~g~l~dr~g~~~~~  307 (405)
T TIGR00891       234 GKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPH-TVANIVVFSNIGAIVG----GCVFGFLGDWLGRRKAY  307 (405)
T ss_pred             hhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCchhhh
Confidence            1111111 111111111221 222333445554 44565543 4444444444444333    99999999999999988


Q ss_pred             HhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHH
Q 009250          400 IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL  479 (539)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~  479 (539)
                      ..+.+...+....+....        ...........+......+..+....++.|.+|++.|+++.|+.+.+.++++.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~  379 (405)
T TIGR00891       308 VCSLLAGQLLIIPVFAIG--------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL  379 (405)
T ss_pred             HHHHHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH
Confidence            777665433332222210        111122222122223333444556677889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-cchhhH
Q 009250          480 VGLFFLDLVETFG-VAPVYA  498 (539)
Q Consensus       480 ~~~~~~~l~~~~g-~~~~~~  498 (539)
                      +|.+.|.+.|+.| |...+.
T Consensus       380 g~~~~g~l~~~~g~~~~~~~  399 (405)
T TIGR00891       380 APIIGALLAQRLDEYGTALA  399 (405)
T ss_pred             HHHHHHHHHHhccccchhHH
Confidence            9999999999998 665444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=5e-35  Score=279.91  Aligned_cols=354  Identities=12%  Similarity=0.036  Sum_probs=247.1

Q ss_pred             hhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHH
Q 009250          100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE  179 (539)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~  179 (539)
                      ......+++.+|.+.+|+|+  +..+.|++.+++.+++.+++++.|+++||+|||+++..+......+.+....++|++.
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDV--SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34455678899999999999  8899999999999999999999999999999998876665555554443344489999


Q ss_pred             HHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHH
Q 009250          180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (539)
Q Consensus       180 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  259 (539)
                      ++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++.++.+..+ ||+.|++.++++++..+
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHH
Confidence            99999999999986 55666677999999999999999999999999999999999988888 99999998888776655


Q ss_pred             H-hcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhh
Q 009250          260 G-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQ  338 (539)
Q Consensus       260 ~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (539)
                      + .+++||+|++.   ++..             + .   ++           ....++++++++..+...+...+...  
T Consensus       160 ~~~~~lp~~p~~~---~~~~-------------~-~---~~-----------~~~~~~~ll~~~~~~~~~~~~~~~~~--  206 (368)
T TIGR00903       160 LVLAALPALPFQA---AEGF-------------G-F---KD-----------AVKEFGALAGRKDLWIIGAILGFGVA--  206 (368)
T ss_pred             HHHHHcCCCCCCC---CCCc-------------c-h---HH-----------HHHHHHHHHcChhHHHHHHHHHHHHH--
Confidence            4 44578877531   0000             0 0   00           00135667777766555444333333  


Q ss_pred             hhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCc---hhhHh-hHHHHHHHHHHHH
Q 009250          339 FAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQ---KLLIG-SYLGMAISMLLVV  414 (539)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r---~~~~~-~~~~~~~~~~~~~  414 (539)
                        .+..+..|.|.++++.+.+..  .+....+..+.+       .+..++++||..||   +.... ..++.++....+.
T Consensus       207 --~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g-------~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~  275 (368)
T TIGR00903       207 --LFDNLAIWLEAALRPAGLEDI--AGDAVALAILAG-------LIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA  275 (368)
T ss_pred             --HHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHH-------HHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence              444566788888887776532  344455555555       45567888887653   32222 2333333222222


Q ss_pred             HHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 009250          415 GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVA  494 (539)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  494 (539)
                      ..        .+.. ..+........+.....+..+++.+|.+|++.|+++.|+.+..++++++++|.+.+.+..  |..
T Consensus       276 ~~--------~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~  344 (368)
T TIGR00903       276 FE--------LNRL-ALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAE  344 (368)
T ss_pred             Hc--------cccH-HHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHH
Confidence            10        0111 112122222222222335566788999999999999999999999999999999988773  666


Q ss_pred             hhhHHHHHHHHHHHHhhh
Q 009250          495 PVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~  512 (539)
                      ..|.++++..+++.+...
T Consensus       345 ~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       345 AYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            778888877777766653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=8.3e-35  Score=283.83  Aligned_cols=369  Identities=18%  Similarity=0.143  Sum_probs=261.2

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +....+..+..+. ....++..|.+.+++|+  ++.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.++++
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~   82 (377)
T TIGR00890         6 LVGTVIMCFTSGY-VYTWTLLAPPLGRYFGV--GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGF   82 (377)
T ss_pred             eHHHHHHHHHhhH-HhhhhhHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHH
Confidence            3333333333333 55678889999999999  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009250          169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY  248 (539)
Q Consensus       169 ~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~  248 (539)
                      +++++++|++.++++|++.|++.+..++.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..+ ||+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~  160 (377)
T TIGR00890        83 TFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFI  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHH
Confidence            999999999999999999999999988888889999997 569999999999999998877666666666666 999999


Q ss_pred             hhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHH
Q 009250          249 IASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA  327 (539)
Q Consensus       249 ~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (539)
                      +.+++.++..+..++ ++++|+. ..+.+                             ++.+.++...++.++++..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~  210 (377)
T TIGR00890       161 YMGIIFLLVIVLGAFLIGYPPGQ-LIKTN-----------------------------IEVSVKDYTVWEMLRTPQFWVL  210 (377)
T ss_pred             HHHHHHHHHHHHHHHheecCchh-ccccC-----------------------------cccchhhhhHHHHHcCccHHHH
Confidence            999888877665544 4433310 00000                             0000011123455566555543


Q ss_pred             HHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHH
Q 009250          328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMA  407 (539)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  407 (539)
                      ........+    .......+.+.+.++.+.+.. ..+....+..+...++    +++.|++.||++||+.+..+.++..
T Consensus       211 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~g~~~~~~~~~~~~~  281 (377)
T TIGR00890       211 YLSFFLNAV----SGLLLIGLYKPYGQSLGLSDG-FLVLAVSISSIFNGGG----RPFLGALSDKIGRQKTMSIVFGISA  281 (377)
T ss_pred             HHHHHHHhH----HHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            332222221    122223344445566665543 3344444444444333    9999999999999999888887777


Q ss_pred             HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 009250          408 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL  487 (539)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l  487 (539)
                      ++.+.+.....      ...........+...+.+ ...+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+
T Consensus       282 ~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  354 (377)
T TIGR00890       282 VGMAAMLFIPM------LNDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHA  354 (377)
T ss_pred             HHHHHHHHccc------chhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            77665544211      011111111222222222 22344456788999999999999999999999999999999999


Q ss_pred             HHHhCcchhhHHHHHHHHHHH
Q 009250          488 VETFGVAPVYAGFGGVSLLSA  508 (539)
Q Consensus       488 ~~~~g~~~~~~~~~~~~~~~~  508 (539)
                      .+..||...|.+.+++.+++.
T Consensus       355 ~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       355 LTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HhhhchhhHHHHHHHHHHHhc
Confidence            999999998888777666543

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=9.4e-34  Score=279.62  Aligned_cols=385  Identities=18%  Similarity=0.132  Sum_probs=253.3

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHH-HHHHh--CCCCCchhhHHHH-----HHHHHHHHHHHhhhhhhhhhhcchH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVS-IAKEL--GFEGNPILEGLVV-----SIFIAGAFVGSISSGSLADKLGCRR  155 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~  155 (539)
                      ++++.+....++.+++.+|...++...|. +.+++  +.  ++. .+++.     ++.+++..+++++.|+++||+|||+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~   95 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQV--SPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence            44556778888999999999998888774 55666  55  444 35553     3455667789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcHH--------HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHH
Q 009250          156 TFQIDTIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII  227 (539)
Q Consensus       156 ~l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  227 (539)
                      ++..+.++++++++++++++|+.        .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.+
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999987        4888999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHH
Q 009250          228 TSLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE  299 (539)
Q Consensus       228 ~~~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (539)
                      ++..+...+.        ...+ ||+.|++.+++.++...+....||+|+|...+++.+                     
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~---------------------  233 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA---------------------  233 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc---------------------
Confidence            8876655443        2345 999999988877665554455778775432211000                     


Q ss_pred             HHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhH--HHHHHHHHHHhccc
Q 009250          300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGA--LASLLVGVTNFAGL  376 (539)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~  376 (539)
                             +.+++....+.++++++.+....  ....+..+ .......+.+.+.+ ..+.+...  ....+.++..+++ 
T Consensus       234 -------~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~-  302 (438)
T PRK09952        234 -------AAKKRIPVIEALLRHPGAFLKII--ALRLCELL-TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLT-  302 (438)
T ss_pred             -------cccccCCHHHHHHHchHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-
Confidence                   00000111222344443332221  11222222 23334445555554 44555431  1222233333333 


Q ss_pred             ccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-ccccccccccc
Q 009250          377 RSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPE  455 (539)
Q Consensus       377 i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  455 (539)
                            .++.|+++||++||+.+..+.++..++...+.....      .......+.......+++.+ ..+..+++..|
T Consensus       303 ------~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e  370 (438)
T PRK09952        303 ------IPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTE  370 (438)
T ss_pred             ------HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  889999999999999887776655444333322111      01111121212222222222 23445678899


Q ss_pred             ccCcccccchhhHHHHHHH-HHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHhhheeeeC
Q 009250          456 LSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVETFG--VAPVYAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       456 ~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      .+|++.|+++.|+.+.... +++.++|.+.+.+.+..+  |...+.+.+++.+++.+.. +..++
T Consensus       371 ~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~  434 (438)
T PRK09952        371 MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKD  434 (438)
T ss_pred             HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccc
Confidence            9999999999999776655 899999999999988653  6666666666666665544 34444

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=3.8e-34  Score=289.01  Aligned_cols=408  Identities=14%  Similarity=0.161  Sum_probs=273.6

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      ++|+.+..++++.+++.++.....+.+|.+.+++|+  ++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGL--TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            456678888899999999999999999999999999  888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      .+++.+++++++|++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-W  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999888888 9


Q ss_pred             HHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHH-HHH---HHHHhcCCCCcchhh---
Q 009250          244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE-EFQ---LVIKKDGSDLDSQWS---  316 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~---  316 (539)
                      |+.|++.++..++..+....+||++++..++++.++..+..+.....+....... ...   .............+.   
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAV  253 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence            9999886655554444445567766543322221111111111100000000000 000   000000000000000   


Q ss_pred             ----------h--hhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchh
Q 009250          317 ----------E--LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCA  383 (539)
Q Consensus       317 ----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  383 (539)
                                .  .......+..........+..+........+.|.+++ +.+.+.. ..+.+.....+.+.++    .
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~-~~g~~~~~~~~~~~~g----~  328 (496)
T PRK03893        254 LGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH-TVANVLFFSGFGAAVG----C  328 (496)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHH----H
Confidence                      0  0000011111111111111111111223456677774 6666544 4555555555554434    9


Q ss_pred             hhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccc
Q 009250          384 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRG  463 (539)
Q Consensus       384 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  463 (539)
                      ++.|++.||++||+.+..+..+..+..+.+....       ...........+...+.+.+..+....++.|.+|++.|+
T Consensus       329 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  401 (496)
T PRK03893        329 CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG-------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRA  401 (496)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhh
Confidence            9999999999999988777655554443332211       011112222222222333344455556788999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Q 009250          464 KIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLL  506 (539)
Q Consensus       464 ~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  506 (539)
                      +++|+.+....+|+.++|.+.|.+.+..|+...+...++.+.+
T Consensus       402 ~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        402 AGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988777655544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=5.7e-34  Score=285.52  Aligned_cols=388  Identities=11%  Similarity=-0.011  Sum_probs=273.1

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      ++|..+..++++.++..++.++++..+|.+.+|+|.  +..+.+|+.+.|.+++.++++++|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~--s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA--SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            456789999999999999999999999999999998  888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcC-CCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcch
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~  242 (539)
                      +.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.++.+ 
T Consensus        81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence            9999999999999999999999999999999998888887776 67899999999999999999999999999999888 


Q ss_pred             hHHHHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHH---------HHHc---CCcchHHHHHH---------H
Q 009250          243 WRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVI---------ANLW---GESEINKAIEE---------F  300 (539)
Q Consensus       243 wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~---------~  300 (539)
                      |||.|++...+.++..++. +++|++++.  ++.+.+......         ....   ...........         .
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG  237 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence            9999999887777665544 446665421  111111111100         0000   00000000000         0


Q ss_pred             HHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhccccccc
Q 009250          301 QLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEK  380 (539)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  380 (539)
                      .....+.+...+....++++++.+....+.......    ......++.|.+++.....+....+.......+...++  
T Consensus       238 ~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~--  311 (495)
T PRK14995        238 LFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMI----TLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS--  311 (495)
T ss_pred             HHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH--
Confidence            000011111112222456676655443333322222    33345567777777654444445555555554444333  


Q ss_pred             chhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcc
Q 009250          381 YCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR  460 (539)
Q Consensus       381 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  460 (539)
                        .++.|++.||+|+|+.+..+.++..++..++.....     ....+.......+.+.+.+.. .+.......+..|++
T Consensus       312 --~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~~~~~  383 (495)
T PRK14995        312 --GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-----STQQWQAWGLMALLGFSAASA-LLASTSAIMAAAPPE  383 (495)
T ss_pred             --HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCHH
Confidence              899999999999999888888777776665544211     011222222333333333322 233445566788999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009250          461 TRGKIMGFSFSVHWVCNFLVGLFFLDLVET  490 (539)
Q Consensus       461 ~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~  490 (539)
                      +++.+.++.++..++|+.+|+.+.|.+.++
T Consensus       384 ~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        384 KAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998764

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.9e-33  Score=277.75  Aligned_cols=361  Identities=15%  Similarity=0.160  Sum_probs=233.1

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHH-HHHH-----HHHHHHHHhhhhhhhhhhcchHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLV-VSIF-----IAGAFVGSISSGSLADKLGCRRTFQ  158 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-----~~~~~~~~~~~g~l~dr~Grr~~l~  158 (539)
                      |++....++++.+++.+|...++...|.+.+|++.  ++.+.+.+ .+..     .++..+++++.|+++||+|||++++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFP--AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence            44468888999999999999999999999999998  55444333 3322     2233478999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHH--------HHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHH
Q 009250          159 IDTIPLILGAIISAQAHSLDE--------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL  230 (539)
Q Consensus       159 ~~~~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  230 (539)
                      .+.+++++++++++++++++.        ++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999874        688999999999999999999999999999999999999888888877777


Q ss_pred             HhcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHH
Q 009250          231 FLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQL  302 (539)
Q Consensus       231 ~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (539)
                      .+++.+.        +..+ ||+.|++.++...+........||++++..+                             
T Consensus       171 ~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-----------------------------  220 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLAR-----------------------------  220 (434)
T ss_pred             HHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh-----------------------------
Confidence            6666542        3456 9999998654432222221222332211000                             


Q ss_pred             HHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccc
Q 009250          303 VIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKY  381 (539)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~  381 (539)
                         +++.+.+..++...+++   ..........+.....+.....+.|.++++ .+.+.. .......+..+.+.++   
T Consensus       221 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~-~~~~~~~~~~~~~~~~---  290 (434)
T PRK15075        221 ---KHRPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAA-DSLLVTLCVGVSNFIW---  290 (434)
T ss_pred             ---hhccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH---
Confidence               00000111122222221   222221222222333455667778888776 466543 3333333333333222   


Q ss_pred             hhhhHHHHhhhcCCchhhHhhHHHHHHHHHH-HHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcc
Q 009250          382 CALCASYLMDKEGRQKLLIGSYLGMAISMLL-VVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR  460 (539)
Q Consensus       382 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  460 (539)
                       .++.|+++||++||+.+..+..+..+.... +.....     ............+...+++ ...+....+..|.+|++
T Consensus       291 -~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~  363 (434)
T PRK15075        291 -LPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA-----APSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAE  363 (434)
T ss_pred             -HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCC
Confidence             899999999999999877665443322211 111111     0011111111122222222 22333446778999999


Q ss_pred             cccchhhHHHHHHHH-HHHHHHHHHHHHHHHhCcc
Q 009250          461 TRGKIMGFSFSVHWV-CNFLVGLFFLDLVETFGVA  494 (539)
Q Consensus       461 ~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~g~~  494 (539)
                      .|+++.|+.+.+... ++.++|.+.|.+.|..|+.
T Consensus       364 ~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        364 VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            999999997666654 5888999999999998864

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=9.4e-34  Score=277.85  Aligned_cols=364  Identities=20%  Similarity=0.204  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  165 (539)
                      +.+..+++..++..++..+..+.+|. +.+++|.  ++.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGF--SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence            34666777888888888888999986 6788999  88899999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhh--------hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC
Q 009250          166 LGAIISAQA--------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (539)
Q Consensus       166 ~~~~~~~~a--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~  237 (539)
                      ++.++++++        .+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122         93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            887776654        256788999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhh
Q 009250          238 DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE  317 (539)
Q Consensus       238 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (539)
                      +..+ ||+.+++.++..++..+.....|++++     .+                                 +++.++++
T Consensus       173 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------------------------~~~~~~~~  213 (399)
T PRK05122        173 HWGG-LAGLGLLIMLLALLGLLLARPRPAVPP-----VK---------------------------------GERLPFRR  213 (399)
T ss_pred             Hccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC---------------------------------ccchhHHH
Confidence            8888 999998877665554443332333210     00                                 00001111


Q ss_pred             hhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCch
Q 009250          318 LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQK  397 (539)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~  397 (539)
                      .++.  .+.......+..+    .+.....+.+.+..+.+............+..+++       .++.+++.||+++|+
T Consensus       214 ~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~l~~r~~~~~  280 (399)
T PRK05122        214 VLGR--VWPYGMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGA-------RLLFGNLINRLGGLR  280 (399)
T ss_pred             HHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHH-------HHHHHHHHHHhccHH
Confidence            1111  1111111111111    22233345555555555433322223334444444       899999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHH
Q 009250          398 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN  477 (539)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  477 (539)
                      .+..+..+..++..++....        +.+.......+.+.+.+ ...+.......|..|++.|+++.|+.+...++|.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (399)
T PRK05122        281 VAIVSLLVEILGLLLLWLAP--------SPWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL  351 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            88887777777665554411        12222222222222222 2234444556688899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhe
Q 009250          478 FLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY  513 (539)
Q Consensus       478 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  513 (539)
                      .+++.+.|.+.+..|++..+++.+++.+++.++.+.
T Consensus       352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888777777665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.3e-33  Score=280.33  Aligned_cols=397  Identities=15%  Similarity=0.130  Sum_probs=253.9

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      +|..+....+......++...+....|.+.++ |+  +..+.+++.+++.+++.+++++.|+++||+|||++++.+.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~--s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CC--CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            34445555566666666666677788988888 88  8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh----cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHH-HHHHhcCCCCCC
Q 009250          165 ILGAIISAQAH----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII-TSLFLGIPAEDD  239 (539)
Q Consensus       165 ~~~~~~~~~a~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~l~~~  239 (539)
                      +++.+++++++    +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++..+...
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            99999988764    7888999999999999988888888999999999999999999999998864 455543333233


Q ss_pred             cchhHHHHHhhHHHHHHHHH-HhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchh-hh
Q 009250          240 PHWWRTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW-SE  317 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  317 (539)
                      .+ ||+.|++.+++.++..+ ..++++|+|+....+. .++..+         +.++   +. ...++++.+.++.+ +.
T Consensus       184 ~g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---------~~~~---~~-~~~~~~~~~~~~~~~~~  248 (452)
T PRK11273        184 ND-WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN---------DYPD---DY-NEKHEQELTAKQIFMQY  248 (452)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh---------cccc---cc-ccccCCCccHHHHHHHH
Confidence            35 99999998887776544 4455777764311100 000000         0000   00 00000000001111 22


Q ss_pred             hhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc--C
Q 009250          318 LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE--G  394 (539)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~--g  394 (539)
                      .++++..+...+...+...    .......+.|.++++. +.+.. ..+....+..+.+.++    .++.|+++||+  +
T Consensus       249 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~-~~~~~~~~~~~~~~~g----~~~~G~l~dr~~~~  319 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALD-KSSWAYFLYEYAGIPG----TLLCGWMSDKVFRG  319 (452)
T ss_pred             HHcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHccC
Confidence            4455554443333322222    2334556778877764 55533 3333333333333333    89999999999  4


Q ss_pred             CchhhH-hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCcccccchhhHHHHH
Q 009250          395 RQKLLI-GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSV  472 (539)
Q Consensus       395 ~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~  472 (539)
                      ||.... ....+..++.+.+....       ..+.... ...++..+... +.......+..|.+|++.+|++.|+.+..
T Consensus       320 r~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  391 (452)
T PRK11273        320 NRGATGVFFMTLVTIATIVYWLNP-------AGNPTVD-MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  391 (452)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhc-------ccChHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence            444322 22222222222221111       0111111 11122222211 11222234566999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeee
Q 009250          473 HWVCNFL-VGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV  516 (539)
Q Consensus       473 ~~~g~~~-~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  516 (539)
                      .++|+.+ +|.+.|.+.|..||...|++.+++++++.+....+.+
T Consensus       392 ~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  436 (452)
T PRK11273        392 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  436 (452)
T ss_pred             HHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998765 7999999999999999999888887777666554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=2.7e-34  Score=282.43  Aligned_cols=390  Identities=17%  Similarity=0.116  Sum_probs=268.7

Q ss_pred             HhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh
Q 009250           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (539)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~  175 (539)
                      +++..++...++...|.+.+++|+  ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence            345567778888899999999999  888999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009250          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (539)
Q Consensus       176 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  255 (539)
                      |++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.+++.+
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~  159 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGI  159 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998888878 9999999888877


Q ss_pred             HHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHH
Q 009250          256 ILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALF  334 (539)
Q Consensus       256 ~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (539)
                      +..+..++ .+|+|+.   +...++..+....       +..  ..+...+++.+..+...++.++++..+...+...+.
T Consensus       160 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (399)
T TIGR00893       160 IWGVLWLKFIPDPPQK---AKWLTEEEKYIVV-------GGL--LAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLV  227 (399)
T ss_pred             HHHHHhhheecCCCCc---cccCCHHHHhhcc-------hhh--ccccccccccCCCccchHHHhcCHHHHHHHHHHHHH
Confidence            76655544 5554421   1100110000000       000  000000111122233455666665544433322222


Q ss_pred             HHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh-hHHHHHHHHHH
Q 009250          335 LLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG-SYLGMAISMLL  412 (539)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~  412 (539)
                          .........+.|.++++ .+.+.. ..+.......+.+.++    .++.+++.||++||+.... ......++.+.
T Consensus       228 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (399)
T TIGR00893       228 ----NIGLGFFLTWFPTYLVQERGLSIL-EAGFMASLPGIVGFIG----MILGGRLSDLLLRRGKSLVFARKTAIIAGLV  298 (399)
T ss_pred             ----HhHHHHHHHHHHHHHHHHhcccHH-HhhHHHHHHHHHHHHH----HHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence                22344555566666654 444432 4444444444444333    9999999999999862111 11111111111


Q ss_pred             HHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009250          413 VVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG  492 (539)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g  492 (539)
                      ........   ................++..+..+....+..|..|++.|+++.|+.+.+.++|..++|.+.|.+.+..|
T Consensus       299 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       299 LSLLMFAT---NYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHHHHHHh---ccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            11100000   001112222222233333344567778889999999999999999999999999999999999999988


Q ss_pred             -cchhhHHHHHHHHHHHHhhh
Q 009250          493 -VAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       493 -~~~~~~~~~~~~~~~~~~~~  512 (539)
                       +...+.+.+++.+++.++.+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       376 SFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             chhHHHHHHHHHHHHHHHHHH
Confidence             88888888777777665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=5.6e-33  Score=266.53  Aligned_cols=376  Identities=15%  Similarity=0.059  Sum_probs=268.7

Q ss_pred             HHHHHHHHHHHhhhhhcccccchhHHHHHH-HhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ++.+.+..++.++......+.+++.+.+.+ |+|+  ++.|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~l--s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~  110 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNF--TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            456777788888888888999999998876 8999  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-----hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC--
Q 009250          165 ILGAIISAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE--  237 (539)
Q Consensus       165 ~~~~~~~~~a-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~--  237 (539)
                      ++.+++++++     +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.  
T Consensus       111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~  189 (462)
T PRK15034        111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV  189 (462)
T ss_pred             HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999987     8999999999999998 6799999999999999999999999997677777665544443211  


Q ss_pred             ----------------CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHH
Q 009250          238 ----------------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ  301 (539)
Q Consensus       238 ----------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (539)
                                      +..+ ||.++++..++.++..++.++..++++                                
T Consensus       190 ~l~~~~G~~~~~~~~g~~~~-~~~~~~~~~~~~iv~~i~~~~~~~~~~--------------------------------  236 (462)
T PRK15034        190 PVFAFLGVNGVPQADGSVMS-LANAAWIWVPLLAIATIAAWSGMNDIA--------------------------------  236 (462)
T ss_pred             HHHHHhccccccccccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCcc--------------------------------
Confidence                            1223 899998888888777766665544321                                


Q ss_pred             HHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccc
Q 009250          302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKY  381 (539)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  381 (539)
                           +.+.......+.+|++..|...+.+.+    .+..+..+.++.|++.++.. +.. .......+..+++.+    
T Consensus       237 -----~~~~~~~~~~~vlk~~~~Wllslly~~----tFG~fvg~s~~lp~~~~~~~-~~~-~~l~~~~l~~l~~~l----  301 (462)
T PRK15034        237 -----SSRASIADQLPVLQRLHLWLLSLLYLA----TFGSFIGFSAGFAMLAKTQF-PDV-NILRLAFFGPFIGAI----  301 (462)
T ss_pred             -----ccccCHHHHHHHhCCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHc-ChH-HHHHHHHHHHHHHHH----
Confidence                 011112345567777776665554433    34466667777777776633 221 111111222233322    


Q ss_pred             hhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHH--HHHhcccccccccccccccCc
Q 009250          382 CALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYI--FTFAIGAGPVTGLVIPELSSN  459 (539)
Q Consensus       382 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~  459 (539)
                      .++++|+++||+|+++++.++++.+.+....+....  +...  ..........++.  ...+.+.. ..+-++.+.+|+
T Consensus       302 ~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p~~~--~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~  376 (462)
T PRK15034        302 ARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--PGTG--SGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQ  376 (462)
T ss_pred             HHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--cccc--ccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhh
Confidence            289999999999999999988877766654433322  1111  1122222222222  23333333 344566666664


Q ss_pred             ---------------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhheeeeC
Q 009250          460 ---------------------RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       460 ---------------------~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  517 (539)
                                           ++.|.+.|+...++.+|+++.|.++|...+..| +...|+.+.+..+++.++.++.+.+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        377 ITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             hhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                 157889999999999999999999999988877 6667888888888877777665543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=3.7e-33  Score=271.21  Aligned_cols=371  Identities=11%  Similarity=0.110  Sum_probs=258.9

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      .+..+++..+..+.......+.+|.+++|+|+  +..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGI--SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG   81 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCC--CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            35667778888888888899999999999999  8888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                      .+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++.+.+..+ ||+.|
T Consensus        82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f  160 (382)
T PRK10091         82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTF  160 (382)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888777 99999


Q ss_pred             HhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhH
Q 009250          248 YIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV  326 (539)
Q Consensus       248 ~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (539)
                      ++.+++.++..+.. .++||.++    +.+.                                +.+..+ +.++++..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~lp~~~~----~~~~--------------------------------~~~~~~-~~~~~~~~~~  203 (382)
T PRK10091        161 LLIAVFNIAVLASIYFWVPDIRD----EAKG--------------------------------GLREQF-HFLRSPAPWL  203 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCc----cccc--------------------------------CHHHHH-HHhcChHHHH
Confidence            99888777665443 34565431    0000                                000011 1233333332


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHH
Q 009250          327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGM  406 (539)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  406 (539)
                      .....   .......+....+..+++.+..+.+.. ..+.......+...++    .++.+++.||+++|+.+..+..+.
T Consensus       204 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~ig----~~~~g~l~~r~~~~~~~~~~~~~~  275 (382)
T PRK10091        204 IFAAT---MFGNAGVFAWFSYIKPYMMFISGFSET-SMTFIMMLVGLGMVLG----NLLSGRLSGRYSPLRIAAVTDFII  275 (382)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----hHHHheeccccCchhHHHHHHHHH
Confidence            22211   111111122233334444444565543 4445444444444333    999999999999999888887777


Q ss_pred             HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 009250          407 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD  486 (539)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~  486 (539)
                      +++.+++.....       ..+......++...+......+.......+..+++.++.+  ..+...++|.+++|.+.|.
T Consensus       276 ~i~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~  346 (382)
T PRK10091        276 VLALLMLFFFGG-------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGM  346 (382)
T ss_pred             HHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHH
Confidence            766655433211       1222222222222222221222222333444444444443  4467788999999999999


Q ss_pred             HHHH-hCcchhhHHHHHHHHHHHHhhheee
Q 009250          487 LVET-FGVAPVYAGFGGVSLLSALFAYYFI  515 (539)
Q Consensus       487 l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  515 (539)
                      +.|. .+|...+.+.+++..+.......+.
T Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        347 MLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            9996 5788888877666666555443333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=9.8e-33  Score=268.45  Aligned_cols=368  Identities=15%  Similarity=0.117  Sum_probs=256.4

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      +.|+.+..+.+..+..........+.+|.+.+++|+  ++.+.++..+++.++..+++++.|+++||+|||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~   94 (394)
T PRK10213         17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGI--SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL   94 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            345555666666555555555666678999999999  889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      .+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w  173 (394)
T PRK10213         95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-W  173 (394)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998888 9


Q ss_pred             HHHHHhhHHHHHHHHHHhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccC
Q 009250          244 RTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP  322 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (539)
                      |+.|++.+++.++..+... ..||+|+.                                     +++.....++.++++
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~-------------------------------------~~~~~~~~~~~l~~~  216 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPGE-------------------------------------PSHQKQNTFRLLQRP  216 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCcc-------------------------------------cccchhHHHHHhcCH
Confidence            9999998877766554433 24554310                                     000011233455555


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhh
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGS  402 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~  402 (539)
                      ..+...+...+....   .+....+..|.+.++.+.+.. ..+.......+.+.++    .++.+++.||.+ |+.+..+
T Consensus       217 ~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~g~s~~-~~g~~~~~~~~~~iig----~~~~~~l~~r~~-~~~l~~~  287 (394)
T PRK10213        217 GVMAGMIAIFMSFAG---QFAFFTYIRPVYMNLAGFGVD-GLTLVLLSFGIASFVG----TSLSSFILKRSV-KLALAGA  287 (394)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHH----HHHHHHHHhccc-hhHHHHH
Confidence            554433322222221   122233445777777776654 3344444433333333    889999999954 4433333


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHH
Q 009250          403 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG  481 (539)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~  481 (539)
                      ..+..+..+.+....       ...+.......+.  +++.+. .+...+++.+..|+ .++.+.++.....++|..+||
T Consensus       288 ~~~~~~~~~~l~~~~-------~~~~~~~~~~~l~--G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~  357 (394)
T PRK10213        288 PLVLAVSALVLTLWG-------SDKIVATGVAIIW--GLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGA  357 (394)
T ss_pred             HHHHHHHHHHHHHHh-------hhHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHH
Confidence            333333322222211       0222222222222  333222 34444456677764 467888888888899999999


Q ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHHHh
Q 009250          482 LFFLDLVETFGVAPVYAGFGGVSLLSALF  510 (539)
Q Consensus       482 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  510 (539)
                      .+.|.+.|..|+...+...+.+.++..+.
T Consensus       358 ~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        358 AIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            99999999999888777766665555443

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=1.3e-32  Score=269.08  Aligned_cols=363  Identities=16%  Similarity=0.135  Sum_probs=253.9

Q ss_pred             HHHHHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      +..+.++.++..+...+..|.+|. +.+|+|.  |..+.|++.+++.+++.++++++|+++||+|||+++..+.++..++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~--s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGF--GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCC--cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            445555666667777788888885 6789999  8999999999999999999999999999999999999998887776


Q ss_pred             HHHHH---h-----hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          168 AIISA---Q-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       168 ~~~~~---~-----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      .+.+.   +     .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++++++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~  174 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH  174 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55332   2     357899999999999999999999999999999999999999999999999999999999988887


Q ss_pred             cchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhh
Q 009250          240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL  319 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (539)
                      .+ ||+.+++..+..++........||.++    +                               +   +.+.+.++..
T Consensus       175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------------------~---~~~~~~~~~~  215 (392)
T PRK12382        175 FG-FAALALTTMVLPLLAWAFNGTVRKVPA----H-------------------------------A---GERPSLWSVV  215 (392)
T ss_pred             cC-hHHHHHHHHHHHHHHHHHHHhccCCCC----C-------------------------------c---ccCchHHHHH
Confidence            77 999877665554433332222232210    0                               0   0000111111


Q ss_pred             ccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhh
Q 009250          320 EEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLL  399 (539)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~  399 (539)
                      +.  .+...+...+..    ........+.+.++++.+...........++..+.+       .++.|++.||+++|+.+
T Consensus       216 ~~--~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~l~~r~g~~~~~  282 (392)
T PRK12382        216 GL--IWKPGLGLALQG----VGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLM-------RVLFGWMPDRFGGVKVA  282 (392)
T ss_pred             HH--HHHhHHHHHHHH----HHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-------HHHHHHHHHhcCCCeeh
Confidence            10  011011111111    122234445566666666544323222333333333       89999999999999988


Q ss_pred             HhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHH
Q 009250          400 IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL  479 (539)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~  479 (539)
                      ..+..+..++.+++....        +.+.......+...+.+ ...+.......+..|+++||++.|+.+...++|..+
T Consensus       283 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i  353 (392)
T PRK12382        283 IVSLLVETVGLLLLWLAP--------TAWVALAGAALTGAGCS-LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV  353 (392)
T ss_pred             HHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            888877777766554411        12222222222222222 123445566678889999999999999999999999


Q ss_pred             HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          480 VGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       480 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      +|.+.|.+.++.||+..|.+.+++.+++.++.+..
T Consensus       354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999888887777665443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-34  Score=263.75  Aligned_cols=439  Identities=21%  Similarity=0.246  Sum_probs=308.0

Q ss_pred             CCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHh-CCC-----CCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchH
Q 009250           82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL-GFE-----GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR  155 (539)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~  155 (539)
                      .++..+.+.+..++.+.++++...++.+.+.+...+ |-+     ..+...+.+..+..+|..+||+++|+++||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            356677888999999999999999999999888765 322     34556688999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHH
Q 009250          156 TFQIDTIPLILGAIISAQAH-------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT  228 (539)
Q Consensus       156 ~l~~~~~~~~~~~~~~~~a~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  228 (539)
                      ++...++++.+++++++++.       =..++...|++.|+|.|+-+|...++.+|...+++||...+.+.+..++|.+.
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999888762       25678889999999999999999999999999999999999998888888887


Q ss_pred             HHHhcCCCC--------C-----C-cchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcC-ChhHHHHHHHHHcCCcch
Q 009250          229 SLFLGIPAE--------D-----D-PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGG-MLNDAKAVIANLWGESEI  293 (539)
Q Consensus       229 ~~~~~~~l~--------~-----~-~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  293 (539)
                      |.+++..+.        .     + .+-||..|.+.+++.++.....+.+||+++|..... +.+.+.   .+..+....
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~  272 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSV  272 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccccc
Confidence            776664332        1     1 112999999999999999998999999998863322 212221   111111111


Q ss_pred             HHHHHHHHHHHHhcCCCCcch---hhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHH----H
Q 009250          294 NKAIEEFQLVIKKDGSDLDSQ---WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALAS----L  366 (539)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  366 (539)
                      +-+  +.+ ......+.++..   +...+..+.-+. ++.....++..-..++....+...+++..+........    .
T Consensus       273 ~~~--~~~-~~~~~~~~~~~~~~~F~~~f~~~hg~~-Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~  348 (538)
T KOG0252|consen  273 DIE--AES-TAESDVPPPSNSFGLFSRLFLRWHGKH-LLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFK  348 (538)
T ss_pred             ccc--hhh-ccccCCCCcccccchHHHHHHHHHHHH-HHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHH
Confidence            000  000 001111111112   222222222223 33333333333334556666777788766654321111    0


Q ss_pred             HHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc
Q 009250          367 LVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG  446 (539)
Q Consensus       367 ~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (539)
                      .--...++...+.+.+..+...++|++||+++.+.++.++.+..+.+...+..    ........+...+..+....|-.
T Consensus       349 vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~----~~~~~Gf~v~y~l~~ff~NFGPn  424 (538)
T KOG0252|consen  349 VAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ----LENTIGFVVLYSLTFFFGNFGPN  424 (538)
T ss_pred             HHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc----ccccCceeehHHHHHHHHhcCCC
Confidence            11111112222222337888899999999999999999999888877663321    11122222333333344445566


Q ss_pred             cccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH-----HhCcchhhHHHHHHHHHHHHhhheeeeCCCCC
Q 009250          447 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE-----TFGVAPVYAGFGGVSLLSALFAYYFIVETKGR  521 (539)
Q Consensus       447 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (539)
                      .....+.+|.+|.+.|++..|+....+-.|++++...+.++.+     ..|.+..+++++++.+++.++. +++||+++|
T Consensus       425 ~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~  503 (538)
T KOG0252|consen  425 ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGK  503 (538)
T ss_pred             ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeeccccc
Confidence            6777888999999999999999999999999999999999999     7889999999999988887765 667799999


Q ss_pred             CHHHHHHHhcc
Q 009250          522 SLEEIEMSLNA  532 (539)
Q Consensus       522 ~~~~~~~~~~~  532 (539)
                      ++++++.+.+.
T Consensus       504 ~leei~~e~~~  514 (538)
T KOG0252|consen  504 SLEEISNEEES  514 (538)
T ss_pred             CHHHhcChhhc
Confidence            99988655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.1e-35  Score=266.36  Aligned_cols=379  Identities=16%  Similarity=0.137  Sum_probs=258.7

Q ss_pred             CCCCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHH
Q 009250           80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI  159 (539)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~  159 (539)
                      ..+...++.+.++++.+.++.++...+....+.+++.||+  ++...|++.+.+.+.+.+++|++|+++|||.||+++.+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni--~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNI--SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCC--CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            3445566779999999999999999999999999999999  77777999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       160 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      |..+|.++.++++++..||+++++|.+.|+|.+...+++..+++|.+|..+|++++++++.+..+|..+|.+++..+.+.
T Consensus       104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhh
Q 009250          240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL  319 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (539)
                      .++|||.|++.++++++..++.+++.++|+    ++..++...       +..           .........++.+.+.
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~----rga~~~~~~-------~~~-----------~~~~~ts~~kDl~~l~  241 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPE----RGARDEVDG-------ENK-----------MVKPFTSVWKDLKVLA  241 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCcc----ccccccccc-------CCc-----------CCCCccchHHHHHHHH
Confidence            888999999999999999887766555452    110000000       000           0001111112223333


Q ss_pred             ccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh----cCC
Q 009250          320 EEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK----EGR  395 (539)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr----~g~  395 (539)
                      +++......+.+....+...+.-++...+.++..+-.+.+. .......++....+.+|    .+.+|.++||    +.+
T Consensus       242 ~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~-~~~~ifg~vt~~~G~lG----vl~Ggiisd~~~~~~~~  316 (493)
T KOG1330|consen  242 KIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDH-NATLIFGGVTCAGGSLG----VLFGGIISDKLSRIFPN  316 (493)
T ss_pred             ccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcc-ccchhhhhHHHhhchhh----heehHHHHHHHHHhccc
Confidence            43444333333333333222222333333333333333322 24445566666666666    5666666666    333


Q ss_pred             chhhHh----hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHH
Q 009250          396 QKLLIG----SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFS  471 (539)
Q Consensus       396 r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~  471 (539)
                      -.....    +......+..++...+...    .......+.+++++............-+..|++|++.|.++.++...
T Consensus       317 ~~~~~~~q~~~~~g~~~s~~~L~~~~~~~----~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~  392 (493)
T KOG1330|consen  317 SGTLRASQLSAALGAPLSIPFLFLFPAFT----SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTV  392 (493)
T ss_pred             ccchhHHHHHHhhhhhHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence            122221    1111222222222221111    12222222233333333333334455667799999999999999998


Q ss_pred             HHHHHHHH-HHHHHHHHHHHh
Q 009250          472 VHWVCNFL-VGLFFLDLVETF  491 (539)
Q Consensus       472 ~~~~g~~~-~~~~~~~l~~~~  491 (539)
                      +..+.+-. +|.+.|.+.|+.
T Consensus       393 ~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  393 FEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHHhccCCCcceehhHHHHh
Confidence            88765555 555999998864

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=6.6e-32  Score=262.51  Aligned_cols=362  Identities=15%  Similarity=0.137  Sum_probs=259.6

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      .++.+.++.++..+......+.+|.+.+++|.  +..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHL--PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677788888999999999999999999999  8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                      .+++++++|++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+... |...+
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  163 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW  163 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence            99999999999999999999999999999988888899999999999999999999999999999998876532 32222


Q ss_pred             HhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHH
Q 009250          248 YIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA  327 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (539)
                       ..+........+. +.+.+++    +                               ++ +++..+.++.++++..+..
T Consensus       164 -~~~~~~~~~~~~~-~~~~~~~----~-------------------------------~~-~~~~~~~~~~~~~~~~~~~  205 (381)
T PRK03633        164 -VTGLVLAAILPLL-FTRILNQ----Q-------------------------------AE-NHDSTSIWPMLKLRQARLG  205 (381)
T ss_pred             -HHHHHHHHHHHHH-HhcccCC----C-------------------------------CC-CCCCCCHHHHHHhcchHHH
Confidence             2222221111111 1111110    0                               00 0011233445566554433


Q ss_pred             HHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHH
Q 009250          328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMA  407 (539)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  407 (539)
                      .........    .+.....+.|.+.++.+.+.. ..+.......+...++    ++..|++.||+++|+.+..+.....
T Consensus       206 ~~~~~~~~~----~~~~~~~~lp~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~dr~~~~~~l~~~~~~~~  276 (381)
T PRK03633        206 VNGCIISGI----VLGSLYGLMPLYLNHQGMSDA-SIGFWMALLVSAGILG----QWPIGRLADRFGRLLVLRVQVFVVI  276 (381)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HhhhHHHHHHcCcHHHHHHHHHHHH
Confidence            222212111    223344567778777766544 4444444444444333    8999999999999998887777666


Q ss_pred             HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 009250          408 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL  487 (539)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l  487 (539)
                      ++.+.+..          . ........+.+.+ .....|.......|..|+++++...+..+...++|.+++|.+.|.+
T Consensus       277 ~~~~~~~~----------~-~~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l  344 (381)
T PRK03633        277 LGSIAMLS----------Q-AAMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAML  344 (381)
T ss_pred             HHHHHHhh----------h-HHHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65543321          1 1111122222221 2234566667777888888788888888888899999999999999


Q ss_pred             HHHhCcchhhHHHHHHHHHHHHhh
Q 009250          488 VETFGVAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       488 ~~~~g~~~~~~~~~~~~~~~~~~~  511 (539)
                      .|+.|+...|.+.+++.++..+..
T Consensus       345 ~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        345 MQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHH
Confidence            999999998888877777665543

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.3e-32  Score=268.51  Aligned_cols=370  Identities=15%  Similarity=0.065  Sum_probs=262.3

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      .+++..+..++..++.+......++.+|.+.+++|+  +..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL--PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            345667777888888889889999999999999999  889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC-Ccch
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DPHW  242 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~~  242 (539)
                      .+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+ 
T Consensus        82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-  160 (394)
T PRK03699         82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-  160 (394)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence            999999999999999999999999999999999999999999999999999999988899999999988877654 455 


Q ss_pred             hHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccC
Q 009250          243 WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP  322 (539)
Q Consensus       243 wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (539)
                      ||+.|++.+++.++..++.++ .+.|+.  ++.+               +            +++++    ..+..+ ++
T Consensus       161 w~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~---------------~------------~~~~~----~~~~~~-~~  205 (394)
T PRK03699        161 WYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA---------------P------------KADKP----VAKEKW-GI  205 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC---------------c------------cccCc----cccccC-Ch
Confidence            999999988877666544433 222210  0000               0            00000    000001 11


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG  401 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~  401 (539)
                      ..   +... +..+........+..+.|.++++ .+.+.. ..+...+...+...++    +++.+++.||+++|+.+..
T Consensus       206 ~~---~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~-~~~~~~~~~~~~~~ig----~~~~g~l~dr~~~~~~l~~  276 (394)
T PRK03699        206 GV---LFLA-IAALLYILAQLTFISWVPEYAQKKFGMSLE-DAGNLVSNFWMAYMVG----MWIFSFIVRFFDLQRILTV  276 (394)
T ss_pred             HH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCChH-HhhHHHHHHHHHHHHH----HHHHHHHHHHhchhhHHHH
Confidence            11   1111 11122222334455677777754 465543 4444444444444333    9999999999999998877


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCcccccchhhHHHHHHHHHHHHH
Q 009250          402 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV  480 (539)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~  480 (539)
                      ...+..+...++....        +.......  .+..++. .+..+...++..+..|.+ ++...+......++|..++
T Consensus       277 ~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~  345 (394)
T PRK03699        277 LAGLALVLMYLFVNTD--------DPSHLLYA--ILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLT  345 (394)
T ss_pred             HHHHHHHHHHHHHHcC--------CchHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHH
Confidence            6665555444433211        11111122  2222222 223344445556666544 6778899999999999999


Q ss_pred             HHHHHHHHHHhCcchhhHHHHHHHHHHHHhh
Q 009250          481 GLFFLDLVETFGVAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       481 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  511 (539)
                      |.+.|.+.+..|++..+++.+++.+++.+.+
T Consensus       346 p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        346 FVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            9999999999999998888887777775543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=4.1e-34  Score=281.70  Aligned_cols=381  Identities=14%  Similarity=0.088  Sum_probs=274.3

Q ss_pred             HHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-
Q 009250           95 SNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ-  173 (539)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-  173 (539)
                      ..++..+......+.+|.+.++++.  ++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. 
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTG--STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence            3455556667777888999999887  8889999999999999999999999999999999999988888877766542 


Q ss_pred             ----hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009250          174 ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (539)
Q Consensus       174 ----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~  249 (539)
                          .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..+|+.+++.+.+..+ |++.|++
T Consensus       103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~  181 (417)
T PRK10489        103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGL  181 (417)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHH
Confidence                56889999999999999998889999999999999999999999999999999999999998887777 9999999


Q ss_pred             hHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHH
Q 009250          250 ASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI  329 (539)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (539)
                      .++..++..+..+.+|++++.   +.+.+            +    ..           ++.+..++..++++..+..++
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~---~~~~~------------~----~~-----------~~~~~~~~~~~~~~~~~~~~~  231 (417)
T PRK10489        182 AAAGTFITLLPLLRLPALPPP---PQPRE------------H----PL-----------RSLLAGFRFLLASPVVGGIAL  231 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCCCC---Ccccc------------c----ch-----------HHHHHHHHHHHcChHHHHHHH
Confidence            888777776666666665321   00000            0    00           000112334455555444333


Q ss_pred             HHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHH
Q 009250          330 GGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI  408 (539)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  408 (539)
                      ...+...     ......+.|.+.++ .+.+.. ..+.+.....+...++    .++.+++.||.++++.+..+.++..+
T Consensus       232 ~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~-~~g~~~~~~~~g~~ig----~~~~~~l~~~~~~~~~l~~~~~~~~~  301 (417)
T PRK10489        232 LGGLLTM-----ASAVRVLYPALADEVWQMGAA-QIGLLYAAVPLGAALG----ALTSGWLAHSARPGLLMLLSTLGSFL  301 (417)
T ss_pred             HHHHHHH-----HHhHHHhhHHHHHhccCCChh-HhHHHHHHHHHHHHHH----HHHHHHhhhccCcchHHHHHHHHHHH
Confidence            2222111     22344456777776 555433 4444444444444333    88999999997777777777766666


Q ss_pred             HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 009250          409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL  487 (539)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l  487 (539)
                      +.+++...         + .........+..+++.+. .+...+++.|..|++.||++.|+.+...++|..++|.+.|.+
T Consensus       302 ~~~~~~~~---------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l  371 (417)
T PRK10489        302 AVGLFGLM---------P-MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGL  371 (417)
T ss_pred             HHHHHHcc---------c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence            65554331         1 122222223333333333 344557788999999999999999999999999999999999


Q ss_pred             HHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHHHHH
Q 009250          488 VETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEM  528 (539)
Q Consensus       488 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (539)
                      .+..|+...+...+++.++..++.+...++.|+++.+|.++
T Consensus       372 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        372 GAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            99999988888888877777777777778877766665543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.2e-32  Score=273.98  Aligned_cols=380  Identities=14%  Similarity=0.083  Sum_probs=239.1

Q ss_pred             HHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHH
Q 009250           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (539)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  165 (539)
                      ++.+....+..++..+......+..|.+.+++|+  +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNL--TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3445555555566666666777889999999999  88889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC--------
Q 009250          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE--------  237 (539)
Q Consensus       166 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~--------  237 (539)
                      ++.++++++++++.++++|+++|++.+.. .....+++|++|+++|++++++.....++|..+++.+.+.+.        
T Consensus       113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        113 PAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998865 445668999999999999999998777777766655443321        


Q ss_pred             -CCcchhHHHHHhhHHHHHHHHHHhcccccc-hHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchh
Q 009250          238 -DDPHWWRTMLYIASLPGFILALGMQFTVES-PRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW  315 (539)
Q Consensus       238 -~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (539)
                       +..+ ||+.|++.+++.++..+..++++++ |+     ++.++..                    ++.+.++.+....+
T Consensus       192 ~~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~--------------------~~~~~~~~~~~~~~  245 (476)
T PLN00028        192 PSFTA-WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK--------------------KSGTMPKDSFSKVL  245 (476)
T ss_pred             cchhh-hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH--------------------hcCccccccHHHHH
Confidence             1235 9999999999888776666555543 31     0000000                    00000000111223


Q ss_pred             hhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC
Q 009250          316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG  394 (539)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g  394 (539)
                      ++.++++..+...+.......    .......+.|.++. +.+.+.. ..+....+..+.+.++    +++.|+++||++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~-~a~~~~~~~~~~~~ig----~~~~G~lsDr~~  316 (476)
T PLN00028        246 RYGVTNYRTWILALTYGYSFG----VELTMDNIIAEYFYDRFGLSLE-TAGAIAASFGLMNLFA----RPAGGYLSDVAA  316 (476)
T ss_pred             HHHHcCchhHHHHHHHHHHHH----HHHHHHhHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HhhhHHHHHHHH
Confidence            444555554443332222211    22233444555554 4466543 4444444444444333    999999999998


Q ss_pred             Cch-------hhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhh
Q 009250          395 RQK-------LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMG  467 (539)
Q Consensus       395 ~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  467 (539)
                      ||+       ...+...+.++..+++..    .    .+........+++..+... ..+..+.+..+..| +.+|++.|
T Consensus       317 ~r~~~~~r~~~~~~~~~l~~i~~~~~~~----~----~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g  386 (476)
T PLN00028        317 RRFGMRGRLWALWIVQTLGGVFCIWLGR----A----NSLGAAIVVMILFSIFVQA-ACGATFGIVPFVSR-RSLGVISG  386 (476)
T ss_pred             HhcCcchhHHHHHHHHHHHHHHHHHhcc----c----chHHHHHHHHHHHHHHHHH-hhhhhcccCcccCh-hhchhhhh
Confidence            652       111122221121111111    0    0111222222222222211 22234455566654 57999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          468 FSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       468 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      +.+...++|++++|.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus       387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            998887788877776654 1123358888888887777776655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=4.1e-33  Score=275.98  Aligned_cols=391  Identities=15%  Similarity=0.124  Sum_probs=256.5

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      +|.++....+...........++..+|.+.+++|+  +..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~--s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQA--TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCc--chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            45555555555554444556677889999999999  8888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHH-HHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          165 ILGAIISAQAHSLDEMLW-GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      ++++++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..+++++++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-w  172 (455)
T TIGR00892        95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-W  172 (455)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-h
Confidence            999999999999999875 5799999999877778888899996 779999999999999999999999998888777 9


Q ss_pred             HHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCC-cchhhhhhccC
Q 009250          244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDL-DSQWSELLEEP  322 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  322 (539)
                      |+.|++.+++.++..+..+++.+.++.. .+.+.++..    ........+    +..  .+...++. +....++++++
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~  241 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSKSKSKE----GLPPDGSTK----KLS--KKSTAEKINRFLDFSLFTHR  241 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccc-ccccccccc----cCCCCCccc----ccc--ccchhhhhhhhcchHHhcCc
Confidence            9999999988776655444433222100 000000000    000000000    000  00000000 00012355665


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc--CCchhhH
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE--GRQKLLI  400 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~--g~r~~~~  400 (539)
                      .++.......+...    .+.....+.+.+.++.+.+.. ..+...++..+...++    +++.+++.||.  ++|+...
T Consensus       242 ~~~~~~~~~~l~~~----~~~~~~~~l~~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~d~~~~~~~~~~~  312 (455)
T TIGR00892       242 GFLVYLSGNVIMFL----GFFAPIIFLVPYAKDKGVDEY-EAAFLLSIIGFVDIFA----RPSCGLIAGLKWIRPHVQYL  312 (455)
T ss_pred             hHHHHHHHHHHHHH----HccchHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHhcccccCHHHHHH
Confidence            55443332222222    233344566666777766543 4555555555544333    88899999973  3333333


Q ss_pred             hhH--HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHH
Q 009250          401 GSY--LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN  477 (539)
Q Consensus       401 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  477 (539)
                      ++.  +..+++.+++...         .+... +....+..+++.+ ..+...+.+.|.+|+++++++.|+.+...++|.
T Consensus       313 ~~~~~~~~~l~~ll~~~~---------~~~~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~  382 (455)
T TIGR00892       313 FSFALLFNGLTHLLCALA---------GDYTG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAV  382 (455)
T ss_pred             HHHHHHHHHHHHHHHHHh---------chHHH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHH
Confidence            322  2222222222220         11222 2222222233332 345566778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Q 009250          478 FLVGLFFLDLVETFG-VAPVYAGFGGVSLLSAL  509 (539)
Q Consensus       478 ~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~  509 (539)
                      +++|.+.|.+.+..| |...|++.+++.+++.+
T Consensus       383 ~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       383 LIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999875 88888887777666554

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=6.9e-32  Score=270.47  Aligned_cols=385  Identities=16%  Similarity=0.153  Sum_probs=267.1

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      .++.++++.++..++...+.+.+|.+.+++|.  +..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE--SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            35667778888889998999999999999999  8888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                      .++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.+..+ ||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988887 99999


Q ss_pred             HhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHH---------HcCCcc---hHHHHHH----------HHHHH
Q 009250          248 YIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIAN---------LWGESE---INKAIEE----------FQLVI  304 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~----------~~~~~  304 (539)
                      ++......+..+.... .|+.+.   .+.+.+........         ..+.+.   .......          ....+
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH  244 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9988776666554443 343321   11222222111000         000000   0000000          00000


Q ss_pred             HhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchh
Q 009250          305 KKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCA  383 (539)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~  383 (539)
                      ++...++.. ..++++++.+.......++...    ......++.|++++. .+.+.. ..+.......+...    ++.
T Consensus       245 ~~~~~~~~~-~~~l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~----~~~  314 (471)
T PRK10504        245 ARNNNRALF-SLKLFRTRTFSLGLAGSFAGRI----GSGMLPFMTPVFLQIGLGFSPF-HAGLMMIPMVLGSM----GMK  314 (471)
T ss_pred             HhcCCCCcc-CHHHhcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHH----HHH
Confidence            111111111 2246777766554443333332    344455667777775 455433 44444333333332    227


Q ss_pred             hhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccc
Q 009250          384 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRG  463 (539)
Q Consensus       384 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  463 (539)
                      ++.+++.||+++|+.+..+..+..+...++.....     ............+.+.+.+.. .+.......+..|++.++
T Consensus       315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g  388 (471)
T PRK10504        315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL-----LGWYYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLPDNLAS  388 (471)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHhcc
Confidence            88999999999999998888877776665544211     001111111122222222222 233456677888999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 009250          464 KIMGFSFSVHWVCNFLVGLFFLDLVETFGVA  494 (539)
Q Consensus       464 ~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  494 (539)
                      .+.|+.++...+|..+++.+.|.+.+..|+.
T Consensus       389 ~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        389 SGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999998887763

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=8.9e-32  Score=272.36  Aligned_cols=414  Identities=21%  Similarity=0.198  Sum_probs=292.5

Q ss_pred             HHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII  170 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  170 (539)
                      ..+.............++..+  .+.+..  +.....+..+++++|..+|++++|+++||+|||+++++++++..++.++
T Consensus        89 ~~~~~~~~~~~~~~~~s~~~~--~~~~c~--~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~  164 (521)
T KOG0255|consen   89 VICLDGWVYDYGSSVYSIVSE--WNLVCD--SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGIL  164 (521)
T ss_pred             ccccceeEecCCCCcccccch--hceeeC--cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHH
Confidence            333333333334444444433  344444  7777899999999999999999999999999999999999999999999


Q ss_pred             HHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh
Q 009250          171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (539)
Q Consensus       171 ~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~  250 (539)
                      +++++|++.+++.|+++|++.++...+...++.|++++++|+.+..+ ......+..+++..++++..  + ||+.+++.
T Consensus       165 ~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~  240 (521)
T KOG0255|consen  165 TAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWII  240 (521)
T ss_pred             HHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 66777777777777777665  4 99999999


Q ss_pred             HHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCc----chHHHHHHH--HHHHHhcCCCCcchhhhhhccCch
Q 009250          251 SLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGES----EINKAIEEF--QLVIKKDGSDLDSQWSELLEEPHS  324 (539)
Q Consensus       251 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  324 (539)
                      .+++++.++..++.+|+|||+..+++.+++.+.+++..+.+    ...+.....  ....+....+++..+.++++.+..
T Consensus       241 ~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  320 (521)
T KOG0255|consen  241 SIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRL  320 (521)
T ss_pred             HHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHH
Confidence            99999888886667799999999999999999888875422    111111111  111112222233557788888754


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHH
Q 009250          325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYL  404 (539)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~  404 (539)
                      +...+...+..+    .+....+-........+.+.. ......+......       ....+...|+.|||.....+..
T Consensus       321 ~~~~~~~~~~~~----~~~~~y~gl~~~~~~lg~~~~-~~~~~~~~~~~p~-------~~~~~~~~~~~gR~~~~~~~~~  388 (521)
T KOG0255|consen  321 RYRTLYLLFIWF----VFSLVYYGLSLNVSGLGGNIY-LNFTLSGLVELPA-------YFRNGLLLPEFGRRPPLFLSLF  388 (521)
T ss_pred             HHHHHHHHHHHH----HHhHHHHhhhhhhhhcCchHH-HHHHHHHHHHhhH-------HHHHHHHHHHhCcHHHHHHHHH
Confidence            444333333332    122222223333344444433 3344444455555       7777899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          405 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      +..++++...+.....     ..+.......+..++.+.+... .+.+..|++|+..|..+.+.......++++++|.+.
T Consensus       389 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~  462 (521)
T KOG0255|consen  389 LAGIGLLLFGWLPDDL-----GGWLHWILPLLGKFFIGSAFNL-IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFP  462 (521)
T ss_pred             HHHHHHHHHHHhhccc-----hhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888755311     1112222333333333333333 478889999999999999999999999999999887


Q ss_pred             HHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHHHHHHhc
Q 009250          485 LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLN  531 (539)
Q Consensus       485 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (539)
                      ..... ......+.+++....+.+++...++||++.+.+.+..++.+
T Consensus       463 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  463 LLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            64433 33333333356666666766778999999988765544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=2.2e-32  Score=268.57  Aligned_cols=377  Identities=15%  Similarity=0.089  Sum_probs=263.0

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      ++.+.....+.+..++..+....+.+.+|.+.+++|.  ++.+.++..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNA--GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            4556667777888888888889999999999999999  88899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcch
Q 009250          163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (539)
Q Consensus       163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~  242 (539)
                      +.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.+++++......+|..++|.+++.+.+..+ 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-  165 (406)
T PRK15402         87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-  165 (406)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence            9999999999999999999999999999998889999999999999999999999988888999999999998888777 


Q ss_pred             hHHHHHhhHHHHHHHHHHhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhcc
Q 009250          243 WRTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE  321 (539)
Q Consensus       243 wr~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (539)
                      ||+.|++.++..++..+..+ ..||+++..   ++ +             .   ..           ++....++.++++
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------~---~~-----------~~~~~~~~~~~~~  214 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-K-------------L---SL-----------KELGRDYKLVLKN  214 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-c-------------c---cH-----------HHHHHHHHHHHcC
Confidence            99999998888777665443 355543210   00 0             0   00           0011234556666


Q ss_pred             CchhHHHHHHHHHHHhhhhhhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhH
Q 009250          322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLI  400 (539)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~  400 (539)
                      +..+...+...+...    .......+.|.++ +..+.+.. ..+.......+...    ++.++.+++.||+++|+.+.
T Consensus       215 ~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~~~-~~g~~~~~~~~~~~----~g~~~~g~l~~r~~~~~~~~  285 (406)
T PRK15402        215 RRFVAGALALGLVSL----PLLAWIALSPVILISGEQLSSY-EYGLLQVPVFGALI----AGNLTLARLTSRRPLRSLIR  285 (406)
T ss_pred             cHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHhCCCHH-HHHHHHHHHHHHHH----HHHHHHHHHHHhcCHHHHHH
Confidence            665543333222221    1222333445554 44555543 33333222222222    22899999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHH
Q 009250          401 GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV  480 (539)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~  480 (539)
                      .+.+...++..++.......   .....+......+...+.+.. .+........ .+++++|++.++.+....++..++
T Consensus       286 ~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g  360 (406)
T PRK15402        286 MGLWPMVAGLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLA-NAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVG  360 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHH-hhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHH
Confidence            88877777766665532111   011112222223333333222 2222232322 344789999999999999999999


Q ss_pred             HHHHHHHHHHhCcchhhHHHHHHHHHH
Q 009250          481 GLFFLDLVETFGVAPVYAGFGGVSLLS  507 (539)
Q Consensus       481 ~~~~~~l~~~~g~~~~~~~~~~~~~~~  507 (539)
                      +.+.+.+.+..+.....+..++..++.
T Consensus       361 ~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        361 IELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            999999888777554433333333333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=7.5e-33  Score=276.63  Aligned_cols=394  Identities=14%  Similarity=0.110  Sum_probs=267.4

Q ss_pred             CCchHHHHHHHHHHHhhhhhcccccchhHHHHHH----------------------HhCCCCCchhhHHHHHHHHHHHHH
Q 009250           82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAK----------------------ELGFEGNPILEGLVVSIFIAGAFV  139 (539)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~s~~~~~~~~  139 (539)
                      .+.++.+..++.++..+...++..++...+.+.+                      |+++  +..+.|++.+++.+++.+
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~   91 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKW--SGALQGLILSSHFYGQII   91 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCC--CHHHhhHHHHHHHHHHHH
Confidence            3456778888888888889999888888887766                      6777  888899999999999999


Q ss_pred             HHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhh
Q 009250          140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL  217 (539)
Q Consensus       140 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  217 (539)
                      ++++.|+++||+|||+++..+.++++++++++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999999887654  5688899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCc-chhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHH
Q 009250          218 CQVGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINK  295 (539)
Q Consensus       218 ~~~~~~~G~~~~~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (539)
                      ...+..+|.++++++++.+.+.. + ||+.|++.++++++..++.++ .+|+|+..  +...++.               
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~---------------  233 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFE---------------  233 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHH---------------
Confidence            99999999999999999988874 7 999999999988877666555 45555311  0000000               


Q ss_pred             HHHHHHHHHH--hcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHH
Q 009250          296 AIEEFQLVIK--KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTN  372 (539)
Q Consensus       296 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  372 (539)
                       .+..++..+  ++..+.+..++++++++..+...+....    .......+..+.|.++++ .+.+. ...+....+..
T Consensus       234 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~l~~~~g~s~-~~~g~~~~~~~  307 (465)
T TIGR00894       234 -KKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFG----HFWLYTILPTYLPTFISWVLRVSG-KENGLLSSLPY  307 (465)
T ss_pred             -HHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCcCh-HHhHHHHHHHH
Confidence             000000000  1111123356777776655544433322    222445566677777755 45543 35555555555


Q ss_pred             hcccccccchhhhHHHHhhhcCCchhh--------HhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc
Q 009250          373 FAGLRSEKYCALCASYLMDKEGRQKLL--------IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG  444 (539)
Q Consensus       373 ~~~~i~~~~~~~~~g~l~dr~g~r~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (539)
                      +.+.++    .++.|+++||+++|+..        ..+......+...+.... ..     ......+..+........+
T Consensus       308 ~~~~i~----~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~~~~~~~  377 (465)
T TIGR00894       308 LFAWLC----SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-LS-----AAFYLTIIILTLANAVSSG  377 (465)
T ss_pred             HHHHHH----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-cC-----CchHHHHHHHHHHHHHhhh
Confidence            554433    89999999997654321        111111111111111111 00     1111112222222222222


Q ss_pred             cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--C-cchhhHHHHHHHHHHHHhhh
Q 009250          445 AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF--G-VAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       445 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~--g-~~~~~~~~~~~~~~~~~~~~  512 (539)
                      ..+.......|..|+ .+|.+.|+.+....++++++|.+.|.+.+..  + |...|.+.+++.+++.++..
T Consensus       378 ~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       378 PLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             hhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            223333445566665 7999999999999999999999999887653  2 67778877777777766543

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=3.9e-32  Score=267.05  Aligned_cols=383  Identities=20%  Similarity=0.284  Sum_probs=262.0

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      ++++.+....+..+..+++.....+..|.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCC--CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            345566666777778888888888899999999999  888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      .+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+ |
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~  170 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-W  170 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988888 9


Q ss_pred             HHHHHhhHHHHHHHH-HHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccC
Q 009250          244 RTMLYIASLPGFILA-LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP  322 (539)
Q Consensus       244 r~~f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (539)
                      |+.|++.++..++.. +...++||++++..++ +.++..+..+........+... +.. +.+.+.+..+...+.+++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~  247 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALP-EQKATQGTKRSVFKALFQGK  247 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccc-ccccccchhhHHHHHHhcch
Confidence            999999875555444 4445678877665444 2222222222111110000000 000 00000001111222333333


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhh
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGS  402 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~  402 (539)
                      ..+.......... ...........+.|.+.++.+.+.. ..+.......+...++    .++.+++.||+++|.... .
T Consensus       248 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~-~  320 (398)
T TIGR00895       248 TARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLS-LAATGGALFNFGGVIG----SIIFGWLADRLGPRVTAL-L  320 (398)
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHhhcchHHHHH-H
Confidence            3333332222222 2223344555667777777776644 3444444444444333    999999999999984433 3


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          403 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      ..+..+...++....       .+........++.+.+.+ ...+...++..|.+|++.|+++.|+.+.+..+|.+++|.
T Consensus       321 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~  392 (398)
T TIGR00895       321 LLLGAVFAVLVGSTL-------FSPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPI  392 (398)
T ss_pred             HHHHHHHHHHHHHHh-------hCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333222211       022222222222222222 234556788899999999999999999999999999999


Q ss_pred             HHHHH
Q 009250          483 FFLDL  487 (539)
Q Consensus       483 ~~~~l  487 (539)
                      +.|.+
T Consensus       393 ~~G~l  397 (398)
T TIGR00895       393 LAGYL  397 (398)
T ss_pred             hHHhc
Confidence            99865

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=1.4e-31  Score=263.79  Aligned_cols=374  Identities=20%  Similarity=0.215  Sum_probs=260.0

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCch---hhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPI---LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  165 (539)
                      ...++++.++..+......+.+|.+.+++|++..+.   ..|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            445566677778888888999999999999843321   35899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009250          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (539)
Q Consensus       166 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~  245 (539)
                      ++.++++++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~  173 (408)
T PRK09874         96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP  173 (408)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence            999999999999999999999999865 567788889999999999999999999999999999999998887777 999


Q ss_pred             HHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCch
Q 009250          246 MLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS  324 (539)
Q Consensus       246 ~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (539)
                      .|++.+++.++..+..++ ++|+++..    +.++                 ..+            .....+.++++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------~~~------------~~~~~~~~~~~~~  220 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQPV----SKKE-----------------MLH------------MREVVTSLKNPKL  220 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccc----cchh-----------------hhH------------HHHHHHhCcCCch
Confidence            999988887766655444 44432100    0000                 000            0011122333333


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChh---HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh
Q 009250          325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG---ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG  401 (539)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~  401 (539)
                      ...+....+..  .. .......+.+.+..+......   ...+.+..+..+.+.    ++.+..|++.||++||+.+..
T Consensus       221 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~----~~~~~~g~l~dr~g~~~~~~~  293 (408)
T PRK09874        221 VLSLFVTTLII--QV-ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAAL----LSAPRLGKLGDRIGPEKILIT  293 (408)
T ss_pred             HHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccccchhHHH
Confidence            22222111111  11 122233344445444333221   112233333333332    228889999999999998888


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHH
Q 009250          402 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV  480 (539)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~  480 (539)
                      +..+..++.+.+...         .+. ..+....+..+++.+ ..+.......+..|++.+|+..++.+.+..+|..++
T Consensus       294 ~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~g  363 (408)
T PRK09874        294 ALIFSVLLLIPMSFV---------QTP-LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTG  363 (408)
T ss_pred             HHHHHHHHHHHHHHh---------ccH-HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhh
Confidence            777666555544331         111 222222222222222 234455566678888899999999999999999999


Q ss_pred             HHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          481 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       481 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      |.+.|.+.+..|++..|.+.+++.+++.++.++.
T Consensus       364 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        364 PLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888877765443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=7.7e-32  Score=266.64  Aligned_cols=403  Identities=15%  Similarity=0.119  Sum_probs=261.9

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ++..++...+...........+....|.+++ +|+  ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGF--SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCC--CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            3555666667777777777777777888776 588  8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC-C
Q 009250          165 ILGAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-D  239 (539)
Q Consensus       165 ~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~  239 (539)
                      +++.+++++.    ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+.... .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            9999888765    4677888999999999999999999999999999999999999999999999998877654433 3


Q ss_pred             cchhHHHHHhhHHHHHHHHH-HhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcch-hhh
Q 009250          240 PHWWRTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ-WSE  317 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  317 (539)
                      .+ ||+.|++.++++++..+ ..++++|+|+....+.  .+..      +.+.. +.    ..+. .+.+.+.+.. .+.
T Consensus       182 ~~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~-~~----~~~~-~~~~~~~~~~~~~~  246 (438)
T TIGR00712       182 ND-WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP--IEEY------RNDYP-DD----YNEK-AEQELTAKEIFMQY  246 (438)
T ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC--chhc------ccccc-cc----cccc-cccccchHHHHHHH
Confidence            45 99999998888777654 4455677664211000  0000      00000 00    0000 0000000111 123


Q ss_pred             hhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCc
Q 009250          318 LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQ  396 (539)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r  396 (539)
                      .++++..+...+...+...    .......+.|.++++. +.+.. ..+....+..+.+.++    .+++|++.||++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~-~~~~~~~~~~~~~~ig----~~~~g~l~dr~~~~  317 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFVYL----LRYGVLDWSPTYLKEVKHFALD-KSSWAYFLYEYAGIPG----TLLCGWMSDKVFKG  317 (438)
T ss_pred             HccCchHHHHHHHHHHHHH----HHHHHHHhHHHHHHHccCCChh-hHHHHHHHHHHHHHHH----HHHHHHHHHHhccC
Confidence            5566655554333322222    2334556778887764 44433 3344333333333333    99999999999654


Q ss_pred             hhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCcccccchhhHHHHHHHH
Q 009250          397 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV  475 (539)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  475 (539)
                      +....+.....+..+........+    ..+.... ...++..++. .+..........|.+|++.|+++.|+.+...++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  392 (438)
T TIGR00712       318 NRGATGVFFMTLVTIAVIVYWMNP----AGNPLVD-MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL  392 (438)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhcC----CCchHHH-HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHh
Confidence            322223222222211111111001    0111111 1122222222 111122223566899999999999999999888


Q ss_pred             HH-HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCC
Q 009250          476 CN-FLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK  519 (539)
Q Consensus       476 g~-~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (539)
                      ++ +++|.+.|.+.|+.|+...+.+.+++.+++.++.+.+.+|.|
T Consensus       393 gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       393 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            75 689999999999999999998888887777777766666654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=3.3e-32  Score=265.69  Aligned_cols=374  Identities=17%  Similarity=0.124  Sum_probs=251.7

Q ss_pred             HHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh
Q 009250           95 SNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA  174 (539)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  174 (539)
                      ++++..++...++...|.+.+++|+  +..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   80 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGL--SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS   80 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCC--CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence            3456677888888999999999999  88899999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHH-HhcCCCCCCcchhHHHHHhhHHH
Q 009250          175 HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL-FLGIPAEDDPHWWRTMLYIASLP  253 (539)
Q Consensus       175 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~l~~~~~~wr~~f~~~~~~  253 (539)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+ ||+.|++.+++
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  159 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII  159 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 56666666666 99999998887


Q ss_pred             HHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHH
Q 009250          254 GFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGA  332 (539)
Q Consensus       254 ~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (539)
                      .++..+.. ++.+|+|+....+...++.         .++.    ++.++..+++.+..+...+.+++++..+...+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (379)
T TIGR00881       160 AIIVSLICFLLLRDSPQSCGLPPAEEMP---------NEEP----DGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYV  226 (379)
T ss_pred             HHHHHHHHheeeCCCccccccCccccCc---------cccc----ccccccccccccchHHHHHHHHhcchHHHHHHHHH
Confidence            76655444 4466655311000000000         0000    00000000111111223455666665554443333


Q ss_pred             HHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHH
Q 009250          333 LFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISML  411 (539)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  411 (539)
                      +...    .......+.|.++++ .+.+.. ..+.......+.+.++    .++.+++.||..+++..............
T Consensus       227 ~~~~----~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  297 (379)
T TIGR00881       227 FVYV----VRTGILDWSPLYLTQEKGFSKE-KASWAFTLYELGGLVG----TLLAGWLSDKLFNGRRGPLAVFFMALIIV  297 (379)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHcchh----HHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            3222    233445556666654 455433 4555555555555444    99999999986433322222222111111


Q ss_pred             HHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009250          412 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF  491 (539)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~  491 (539)
                      .+......+    ...........+.......+..+....+..|..|++.|+++.|+.+...++|+.++|.+.|.+.+..
T Consensus       298 ~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       298 SLLVYWLNP----AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             HHHHHhcCc----chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence            111111000    0111111122222222222333444567789999999999999999999999999999999999999


Q ss_pred             Ccchhh
Q 009250          492 GVAPVY  497 (539)
Q Consensus       492 g~~~~~  497 (539)
                      ||+..|
T Consensus       374 g~~~~f  379 (379)
T TIGR00881       374 GWAGAF  379 (379)
T ss_pred             cccccC
Confidence            987653

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=4.6e-31  Score=258.23  Aligned_cols=377  Identities=16%  Similarity=0.109  Sum_probs=249.1

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +....++.++.........+.++.+.+|+|.  ++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~   92 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGL--SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH   92 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCC--CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            4444444455555555555566777789998  88999999999999999999999999999999999999999999987


Q ss_pred             HHHH---h-hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHH-HHHHHhcCCCCCCcchh
Q 009250          169 IISA---Q-AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI-ITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       169 ~~~~---~-a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~~~~~~w  243 (539)
                      +++.   + .++++.+++.|+++|++.+...+...+.+.+++|+++|++++|+.+++.++|. .+++++++.+.+..+ |
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~  171 (402)
T TIGR00897        93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-E  171 (402)
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-h
Confidence            7653   3 35888899999999999998888888899999999999999999999999997 689999988887777 6


Q ss_pred             HHHHHhhHHHHHHHHHHhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccC
Q 009250          244 RTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP  322 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (539)
                      +..+|......++..++.+ +.++.++.. ++++             +               ++.++.+..++.+++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~---------------~~~~~~~~~~~~~~~~~  222 (402)
T TIGR00897       172 MNTLWSALAFVLTGGVIALFSNKDIFTPQ-HMQT-------------R---------------EKFSELGKAATILFTNP  222 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCcc-cccC-------------C---------------cchhhHHHHHHHHHcCh
Confidence            6665554443333333222 233321100 0000             0               00000112344566666


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhH-h
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLI-G  401 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~-~  401 (539)
                      ..+...+...+.    .........+.|.+.++.+.+.. ..+...+...+.+.++    .+..|+++||++||+.+. .
T Consensus       223 ~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~ig----~~~~g~l~dr~~~~~~~~~~  293 (402)
T TIGR00897       223 NVLLGGMVRIIN----TIGLFGFAVFLPMFVAELGFSTS-EWLQIWGTFFFTNIVF----NVIFGIVGDKLGWMNTVRWF  293 (402)
T ss_pred             hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCChh-HHHHHHHHHHHHHHHH----HHHHHHHHHhhcchhHHHHH
Confidence            655433332222    22344456677888888776654 3444444444444333    999999999999888653 2


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHH
Q 009250          402 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG  481 (539)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~  481 (539)
                      +.+...++...+.......   ....+.......+.+.+.+ +..+. .....|..| ++||++.|+.+...++++.++|
T Consensus       294 ~~l~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp  367 (402)
T TIGR00897       294 GGVGCGIFTLALYYIPQHF---GHSFAVALIIAIALGIFLA-GYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAP  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHcc---CCcHHHHHHHHHHHHHHHH-HHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHH
Confidence            3333333333332211100   0011222222222222222 12332 344556555 5799999999999999999999


Q ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHHHhhh
Q 009250          482 LFFLDLVETFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       482 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      .+.|.+.+..|+...+++.+++.+++.++..
T Consensus       368 ~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       368 AIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888777766543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=1e-31  Score=270.87  Aligned_cols=385  Identities=18%  Similarity=0.157  Sum_probs=269.3

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      .+..++++.++..++..+.++.+|.+.+++|.  +..+.+|+.+.+.++..++.++.|+++||+|||+++..+.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS--SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            46677788889999999999999999999999  7888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                      ++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+++.+++++.++.+ ||+.|
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f  159 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF  159 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888 99999


Q ss_pred             HhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHH----------HHcCCcch--HH-HHHHH---------HHHH
Q 009250          248 YIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIA----------NLWGESEI--NK-AIEEF---------QLVI  304 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~-~~~~~---------~~~~  304 (539)
                      ++.++++++..++..+ .||+++  ..+++.+.......          ...+....  +. .....         ....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV  237 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            9988887766654443 455432  11112221111000          00111000  00 00000         0000


Q ss_pred             HhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchh
Q 009250          305 KKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCA  383 (539)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~  383 (539)
                      ++...+.+....++++++.++...+...+..+    .+....++.|.++++. +.+. ...+.......+...++    .
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~s~-~~~g~~~~~~~~~~~~~----~  308 (485)
T TIGR00711       238 WELTDDNPLVDLRLFKYRNFTIGCVYMSLLGL----GLYGSFYLLPLYLQQVLGYTA-LQAGLHILPVGLAPMLS----S  308 (485)
T ss_pred             HHHcCCCCccCHHHHcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHH----H
Confidence            11111111222356666666554443333332    3334556677777664 4443 34555544444444333    9


Q ss_pred             hhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccc
Q 009250          384 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRG  463 (539)
Q Consensus       384 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  463 (539)
                      ++.|++.||++||+.+..+..+..++..++.....    .....+.......+.+.+.+....+ ......+..|+++++
T Consensus       309 ~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~-~~~~~~~~~~~~~~g  383 (485)
T TIGR00711       309 PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMP-LTTIALSGLPPHKIA  383 (485)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHh
Confidence            99999999999999988888777777666542111    1111222222223333333322223 334455778999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009250          464 KIMGFSFSVHWVCNFLVGLFFLDLVETF  491 (539)
Q Consensus       464 ~~~g~~~~~~~~g~~~~~~~~~~l~~~~  491 (539)
                      ++.|+.+..+++|+.+++.+.+.+.++.
T Consensus       384 ~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       384 RGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=8e-31  Score=255.38  Aligned_cols=361  Identities=16%  Similarity=0.102  Sum_probs=250.9

Q ss_pred             HHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHH-HHHHHHHHHHHH
Q 009250           94 MSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIIS  171 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~  171 (539)
                      +.+++..+......|.+|. +++++|.  +..+.|++.+++.+...+.+++.|+++||+||||.++. +.++..++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRA--RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            4466777778888888886 5788999  88999999999999999999999999999999887654 666667788889


Q ss_pred             HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccc--hhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009250          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSL--GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (539)
Q Consensus       172 ~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~  249 (539)
                      ++++|++.+++.|+++|.+.+...|...++..|+.++++|++.  .+....+.++|..+++.+++.+.+..+ ||+.|++
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~  160 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT  160 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence            9999999999999999988888889888999999887777654  577888889999999999999988777 9999999


Q ss_pred             hHHHHHHHHHHhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHH
Q 009250          250 ASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF  328 (539)
Q Consensus       250 ~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (539)
                      .++..++..+..+ ++||+|+...+                                   +....+.++.++++..+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~  205 (375)
T TIGR00899       161 AALAFVLCGVLVWLFLPSYPRGAPG-----------------------------------ALTRLEVRGLLASRDTRLLF  205 (375)
T ss_pred             HHHHHHHHHHHHHHhCCCcccCccc-----------------------------------ccCcchhhhhhcCcchHHHH
Confidence            9888776665544 46776531000                                   00001122344455444433


Q ss_pred             HHHHHHHHhhhhhhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHH
Q 009250          329 IGGALFLLQQFAGINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMA  407 (539)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  407 (539)
                      ....+...    .......+.|.++ ++.+.+.. ..+...........++    .++.|++.||++||+.+..+.+...
T Consensus       206 ~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~----~~~~g~l~~r~g~~~~~~~~~~~~~  276 (375)
T TIGR00899       206 VACTLMWG----CNILYIINMPLLIIHELGLPDK-LAGLMMGTAAGLEIPF----MLLAGYLIKRFGKRRLMLLAALAGV  276 (375)
T ss_pred             HHHHHHHH----HHHHHHhhhHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHhHHHHHHHhcchhHHHHHHHHHH
Confidence            33222222    1222233445454 44555543 4444444433333222    7889999999999998877666544


Q ss_pred             HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 009250          408 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL  487 (539)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l  487 (539)
                      +....+....        +.+.......+...+.+. ..+....+..|..|++ ++++.++.+...++|..++|.+.|.+
T Consensus       277 ~~~~~~~~~~--------~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~  346 (375)
T TIGR00899       277 AFYTGLAADN--------SLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGIL  346 (375)
T ss_pred             HHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433332211        112122222222222221 2344556677888765 67999999999999999999999999


Q ss_pred             HHHhCcchhhHHHHHHHHHHHHhh
Q 009250          488 VETFGVAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       488 ~~~~g~~~~~~~~~~~~~~~~~~~  511 (539)
                      .+..|++..+++.+++.+++.++.
T Consensus       347 ~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       347 AERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHH
Confidence            999999999988888777776654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1e-30  Score=255.72  Aligned_cols=352  Identities=14%  Similarity=0.149  Sum_probs=249.7

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      .+..+.+..++..+......+..|.+.+++|.  ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEIAADLST--PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            34444555566777888889999999999999  8889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                      .++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  162 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF  162 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888777 99999


Q ss_pred             HhhHHHHHHHHHHhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhH
Q 009250          248 YIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV  326 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (539)
                      ++.++..++..+..+ +.||+++.    .+++             +.+               +....+++.++++..+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------------~~~---------------~~~~~~~~~~~~~~~~~  210 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPETLPY----EARI-------------QIS---------------TYFETFLLLLKSKMFWG  210 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCC----cccC-------------CHH---------------HHHHHHHHHHcCchhHH
Confidence            998887776655544 35554320    0000             000               00112345556665554


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHH
Q 009250          327 AFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLG  405 (539)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~  405 (539)
                      ..+.......    .......+.|.+++ +.+.+.. ..+.......+...++    .++.+++.||+++|+.+..+..+
T Consensus       211 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~----~~~~g~l~~~~~~~~~~~~~~~~  281 (385)
T TIGR00710       211 YALIYGASFG----GFFAFFSGAPFVYIDIMGVSPS-VFGLLFALNIIAMIFG----GFLNGRFIKKWGAKSLLRMGLIL  281 (385)
T ss_pred             HHHHHHHHHH----HHHHHHHcChHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHhcCHHHHHHHHHHH
Confidence            4333222222    22334445565554 4555443 4444444444444333    99999999999999988888777


Q ss_pred             HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          406 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      ..++.+++.......     ..............+.+.+ ..+.......|..| +.++++.++.+.....++.+.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~  355 (385)
T TIGR00710       282 FAVSAVLLEITAILG-----LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV  355 (385)
T ss_pred             HHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            776666554422100     1112222222222222222 23444556667776 4699999999999887777777777


Q ss_pred             HHHHH
Q 009250          485 LDLVE  489 (539)
Q Consensus       485 ~~l~~  489 (539)
                      +.+.+
T Consensus       356 ~~~~~  360 (385)
T TIGR00710       356 SLIHG  360 (385)
T ss_pred             Hhccc
Confidence            74433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.9e-30  Score=253.88  Aligned_cols=375  Identities=14%  Similarity=0.122  Sum_probs=247.4

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      ........+.+..++..++...+.|.+|.+.+++|.  +..+.++..+++.+++.++++++|+++||+|||++++.+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~   90 (413)
T PRK15403         13 ATLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNA--DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALI   90 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHH
Confidence            333444555666667778889999999999999999  888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      ++++++++++++|++.++++|+++|++.+...+...+++.|++++++|+++++++..+..+|..+||++++.+.+..+ |
T Consensus        91 ~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w  169 (413)
T PRK15403         91 FTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-W  169 (413)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-H
Confidence            999999999999999999999999999987777888889999999999999999999999999999999998887777 9


Q ss_pred             HHHHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccC
Q 009250          244 RTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP  322 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (539)
                      |+.|++.+++.++..+.. +++||+++.   +++..             .               .+.....++.+++++
T Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~-------------~---------------~~~~~~~~~~ll~~~  218 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF-------------S---------------AKSVLRDFRNVFRNR  218 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC-------------C---------------hHHHHHHHHHHHcCH
Confidence            999999998877776543 446775420   00000             0               000012345667776


Q ss_pred             chhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh
Q 009250          323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG  401 (539)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~  401 (539)
                      ..+...+...+...    .......+.|.++++. +.+.. ..+...........++    ..+.+++.++..+++....
T Consensus       219 ~~~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~-~~gl~~~~~~~~~~i~----~~l~~~~~~~~~~~~~~~~  289 (413)
T PRK15403        219 LFLTGAATLSLSYI----PMMSWVAVSPVILIDAGGMTTS-QFAWTQVPVFGAVIVA----NAIVARFVKDPTEPRFIWR  289 (413)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHhChHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHhccCCchhHHHH
Confidence            66554443322222    2334445567777665 44433 4444332222222111    5666665544444343322


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccchhhH-HHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHH
Q 009250          402 SYLGMAISMLLVVGATSLPLDEDFSHNL-SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV  480 (539)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~  480 (539)
                      ...+..++.+++.......    .+.+. ......++..+.+.. .|...... ..-....+|++.++.+.....+..++
T Consensus       290 ~~~~~~ig~~l~~~~~~~~----~~~~~~~~~~~~l~~~G~~~~-~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~  363 (413)
T PRK15403        290 AVPIQLVGLALLIVGNLLW----PHVWLWSVLGTSLYAFGIGLI-FPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVS  363 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHH-hHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            2223333333322211000    01111 122333333333322 22222111 11122247999999999999999999


Q ss_pred             HHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 009250          481 GLFFLDLVETFGVAPVYAGFGGVSLLSA  508 (539)
Q Consensus       481 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~  508 (539)
                      +...+++.++ +....+...++++.+..
T Consensus       364 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        364 VEIGRWLWFN-GGRLPFHLLAVVAGVIV  390 (413)
T ss_pred             HHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence            9999987765 55666665555544443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-31  Score=243.43  Aligned_cols=384  Identities=15%  Similarity=0.121  Sum_probs=292.7

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ..+.+++-.+...+..+...+.+++.+.+.+|+|+  |+.|.+++.++..+...+..++.|.+.||||.|++..++.++.
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~L--S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGL--SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC--CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            34456666677777777888899999999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHH---HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc
Q 009250          165 ILGAIISAQAHSLD---EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH  241 (539)
Q Consensus       165 ~~~~~~~~~a~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~  241 (539)
                      .+-++..+++.+++   ++++++++.|++.+ .+.+....+++|||++++|.++|+.. ..++|..+..+++..+....+
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            99999999986554   99999999999776 88899999999999999999999999 899998888888877776665


Q ss_pred             --hhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCc-chhhh
Q 009250          242 --WWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLD-SQWSE  317 (539)
Q Consensus       242 --~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  317 (539)
                        .||....+..+..++..+..++ +.|.|..                                  +...++.. .+.+.
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~----------------------------------r~~~~~~~~~~~~~  213 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH----------------------------------RASVKPQLPAQLKA  213 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh----------------------------------hccccccchhHHHH
Confidence              3999999988888887666655 5555421                                  00111111 44666


Q ss_pred             hhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCch
Q 009250          318 LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQK  397 (539)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~  397 (539)
                      ++++++.|...+.+...+    ..+..+..+.|.++++....+...++.......+++.+.    ++++|+++||+|.++
T Consensus       214 v~~~~~~W~lsllY~~tF----G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~----Rp~GG~LsDR~Gg~r  285 (417)
T COG2223         214 VFSNKDTWLLSLLYFATF----GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALA----RPLGGWLSDRIGGRR  285 (417)
T ss_pred             HhcCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH----Hhccchhhhhccchh
Confidence            777777776655544444    467777888888887665554446556666666666444    999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHH
Q 009250          398 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN  477 (539)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  477 (539)
                      .+...+..+.++..++........ ...+........+......+.+.. ..+-++...+|++ .|.+.|+...++.+|+
T Consensus       286 v~~~~f~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~~~-~G~v~G~vga~G~lGG  362 (417)
T COG2223         286 VTLAVFVGMALAAALLSLFLTGFG-HGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFPKE-TGAVTGIVGAIGGLGG  362 (417)
T ss_pred             HHHHHHHHHHHHHHHHHccccccc-cCcchHHHHHHHHHHHHHhccCcc-hheeechHHHHhh-hhHHHHHHHHhccccc
Confidence            999888888888777766331110 001122222222333333334333 4567787888764 8999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhheeeeC
Q 009250          478 FLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       478 ~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      +.-|...+...+..| +...|+++..+.+++.++.+....+
T Consensus       363 f~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         363 FFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             cchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999 7778888888888887766555433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=7.7e-32  Score=261.68  Aligned_cols=353  Identities=13%  Similarity=0.082  Sum_probs=256.8

Q ss_pred             HHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 009250           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (539)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  171 (539)
                      +.++.++..+......+.+|.+..+++.  ++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTG--SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            4456677777788888899999999988  88999999999999999999999999999999999999999999999998


Q ss_pred             Hhhh-----cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009250          172 AQAH-----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM  246 (539)
Q Consensus       172 ~~a~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~  246 (539)
                      ++++     +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+ ||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~  160 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA  160 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence            8888     999999999999999999999999999999999999999999999999999999999999988777 9999


Q ss_pred             HHhhHHHHHHHHHHhcccc--cchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCch
Q 009250          247 LYIASLPGFILALGMQFTV--ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS  324 (539)
Q Consensus       247 f~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (539)
                      |++.++..++..+..+.++  |+++    + +.++            ..++..+           +.+..++.+++++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~------------~~~~~~~-----------~~~~~~~~~~~~~~~  212 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSVRIPELAA----S-EIQA------------LSNAVLR-----------DTREGIKFVLKNPLL  212 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCC----c-cccc------------cchhHHH-----------HHHhHHHHHHcCcHH
Confidence            9998877666655444332  2211    0 0000            0000000           001234556666665


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhH
Q 009250          325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSY  403 (539)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~  403 (539)
                      +.......+....   .......+.|.+.++ .+.+.. ..+.......+...++    .++.+++.||.+||+.+..+.
T Consensus       213 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~  284 (365)
T TIGR00900       213 RTLLLLALLFNLV---FAPAIVALFPYVQSKYLGRGST-HYGWVLAAFGLGALLG----ALLLGLLGRYFKRMALMTGAI  284 (365)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHhHHHHHHHhCCchH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhchhHHHHHHH
Confidence            5544433333221   111222556777665 454433 4444444444444333    889999999999999888776


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      .+.+++...+....        . +........+..+++.+ ..+....+..|..|++.|+++.|+.+...+++..++|.
T Consensus       285 ~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~  355 (365)
T TIGR00900       285 FVIGLAILVVGLTP--------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI  355 (365)
T ss_pred             HHHHHHHHHHHhhc--------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666655554421        1 12222222223333322 34556678889999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 009250          483 FFLDLVETFG  492 (539)
Q Consensus       483 ~~~~l~~~~g  492 (539)
                      +.|.+.|..|
T Consensus       356 ~~g~l~~~~g  365 (365)
T TIGR00900       356 LAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHcC
Confidence            9999998764

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=1.9e-30  Score=254.46  Aligned_cols=353  Identities=16%  Similarity=0.087  Sum_probs=247.5

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +..+.+...+..+...++.|.+|.+.+++|.  ++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   85 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQT--SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS   85 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence            3344444555667778888999999999999  88999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009250          169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY  248 (539)
Q Consensus       169 ~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~  248 (539)
                      ++++++++++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+..+ ||+.|+
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~  164 (401)
T PRK11043         86 LGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFA  164 (401)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHH
Confidence            9999999999999999999999988888888999999999999999999988899999999999999888888 999999


Q ss_pred             hhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHH
Q 009250          249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF  328 (539)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (539)
                      +.+++.++..+..++++|+++.    .+                               +++.+.+++++++++..+...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~----~~-------------------------------~~~~~~~~~~~~~~~~~~~~~  209 (401)
T PRK11043        165 TLFAITLLLILPTLRLKPSKKA----RK-------------------------------QSQDALTFKQLLKSKTYLGNV  209 (401)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCc----cc-------------------------------cchHHHHHHHHHcChhHHHHH
Confidence            9888887776666555554310    00                               000112345556665544433


Q ss_pred             HHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHH
Q 009250          329 IGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI  408 (539)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  408 (539)
                      +.......    .+.....+.|.+.++.+.+.. ..+.......+...+    +.++.+++.||+++|+..........+
T Consensus       210 ~~~~~~~~----~~~~~~~~~p~~~~~~g~s~~-~~g~~~~~~~~~~~~----g~~~~~~l~~r~~~~~~~~~~~~~~~~  280 (401)
T PRK11043        210 LIFAACSA----AFFAWLTGSPFILEQMGYSPA-DIGLSYVPQTIAFLV----GGYGCRAALQKWGGEQLLPWLLVLFAV  280 (401)
T ss_pred             HHHHHHHH----HHHHHHHHhHHHHHHcCCCHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            32222111    223344556777777776544 334333332222222    288889999999998876655555544


Q ss_pred             HHHHHHHHhcCCCCccchhhHHHHH-HHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 009250          409 SMLLVVGATSLPLDEDFSHNLSILG-TLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL  487 (539)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l  487 (539)
                      +.+.+.......    ......... ..+...+. ....+.......+..|+ .+|++.|+.+.+...++..++.+.|.+
T Consensus       281 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        281 SVIAIWLASLLS----HPSLVPLLIPFCVMAAAN-GAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHHHhc----cCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            443332221110    011222222 22222222 22334444555566664 699999999999999999999999988


Q ss_pred             HHHhCcc
Q 009250          488 VETFGVA  494 (539)
Q Consensus       488 ~~~~g~~  494 (539)
                      .+.....
T Consensus       355 ~~~~~~~  361 (401)
T PRK11043        355 ISTPLLT  361 (401)
T ss_pred             cCCChhH
Confidence            7644333

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=2.2e-30  Score=254.50  Aligned_cols=370  Identities=14%  Similarity=0.091  Sum_probs=250.0

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ....+..+.+..++.++......+..|.+++++|+  ++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~--s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34456677777788888999999999999999999  8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC----
Q 009250          165 ILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE----  237 (539)
Q Consensus       165 ~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~----  237 (539)
                      +++++++   .++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..+.+|..+++.++..+.    
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999886   468999999999999999999999999999999887777777899999999999999998875432    


Q ss_pred             -------------CC-cc-------hhHHHHHhhH-HHHHHHHHH-hcccccchHHHHhcCChhHHHHHHHHHcCCcchH
Q 009250          238 -------------DD-PH-------WWRTMLYIAS-LPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN  294 (539)
Q Consensus       238 -------------~~-~~-------~wr~~f~~~~-~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (539)
                                   +. .+       +||++|+... +..++..+. ....||.+.    + +.                 
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~-----------------  239 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NH-----------------  239 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cc-----------------
Confidence                         00 01       2666776433 333332222 222343210    0 00                 


Q ss_pred             HHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHH-HHH-cCCChhHHHHHHHHHHH
Q 009250          295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLT-FQD-VGITDGALASLLVGVTN  372 (539)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~  372 (539)
                               .+++..+.....+++++++.++...+..++...    .......+.+.+ .++ .+.+.. ..+..+....
T Consensus       240 ---------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~g~s~~-~ag~~~~~~~  305 (438)
T PRK10133        240 ---------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAG-FAANYLTGTM  305 (438)
T ss_pred             ---------ccccccchhhhHHHHHhCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCCHH-HHHHHHHHHH
Confidence                     000000111234566777776654443333322    222222334444 444 354433 5555555555


Q ss_pred             hcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccc
Q 009250          373 FAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV  452 (539)
Q Consensus       373 ~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (539)
                      +...++    +++++++.||+++|+++..+..+..+.+++..+.         .....+....+.+.+. ....|..++.
T Consensus       306 ~~~~vG----~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~glg~-~~i~P~~~s~  371 (438)
T PRK10133        306 VCFFIG----RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAFM-SIQYPTIFSL  371 (438)
T ss_pred             HHHHHH----HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            544444    9999999999999998887776665554444331         1111222222222222 2335667777


Q ss_pred             cccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHH
Q 009250          453 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSA  508 (539)
Q Consensus       453 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~  508 (539)
                      ..+..|++ .+++.++.. +..+|+.++|.+.|.+.|..| .+..|++.....+...
T Consensus       372 a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            77877764 778888876 455789999999999999887 5666665444444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=2.1e-30  Score=253.41  Aligned_cols=353  Identities=17%  Similarity=0.207  Sum_probs=240.9

Q ss_pred             HHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII  170 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  170 (539)
                      ......+..........+.+|.+.+++|.  ++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNA--SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            33444455555556666889999999999  8889999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh
Q 009250          171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (539)
Q Consensus       171 ~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~  250 (539)
                      +.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+ ||+.|++.
T Consensus        85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~  163 (392)
T PRK10473         85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTM  163 (392)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988877777 99999998


Q ss_pred             HHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHH
Q 009250          251 SLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI  329 (539)
Q Consensus       251 ~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (539)
                      ++..++..+.. ++++|+++.   +.+ +                             +.......++.++++..+...+
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~---~~~-~-----------------------------~~~~~~~~~~~~~~~~~~~~~~  210 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPA---RAP-A-----------------------------ASSKPRENSESLLNRFFLSRLV  210 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCc---ccC-C-----------------------------ccchHHHHHHHHhCHHHHHHHH
Confidence            88777665544 445554310   000 0                             0000011223344444333222


Q ss_pred             HHHHHHHhhhhhhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHH
Q 009250          330 GGALFLLQQFAGINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI  408 (539)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  408 (539)
                      ...+...    .......+.|.++ ++.+.+.. ..+.......+.+.++    .++.+++.||++||+.+..+..+..+
T Consensus       211 ~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~i~~----~~~~~~l~~r~g~~~~~~~~~~~~~~  281 (392)
T PRK10473        211 ITTLSVT----VILTFVNTSPVLLMEQMGFSRG-EYAIIMALTAGVSMTV----SFSTPFALGIFKPRTLMLTSQVLFLA  281 (392)
T ss_pred             HHHHHHH----HHHHHHHhCHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2222111    1112223344444 44565543 3444444444444333    89999999999999998888887777


Q ss_pred             HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 009250          409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV  488 (539)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~  488 (539)
                      +.+.+....        ..+.......+...+++.+...   ....+..|.+.++   |..+....++..+++.+.+.+.
T Consensus       282 ~~~~~~~~~--------~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~  347 (392)
T PRK10473        282 AGITLALSP--------SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLA  347 (392)
T ss_pred             HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence            766665522        1222222233333333332221   2223444544343   4445556677788888888888


Q ss_pred             HHhCcchhhHHHHH
Q 009250          489 ETFGVAPVYAGFGG  502 (539)
Q Consensus       489 ~~~g~~~~~~~~~~  502 (539)
                      +..|+.....+.+.
T Consensus       348 ~~~g~~~~~~~~~~  361 (392)
T PRK10473        348 AVLGISAWNMLIGI  361 (392)
T ss_pred             HHhccchhHHHHHH
Confidence            88887654444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.98  E-value=4.4e-30  Score=247.95  Aligned_cols=345  Identities=29%  Similarity=0.375  Sum_probs=276.1

Q ss_pred             HHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII  170 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  170 (539)
                      .+.+..+...++.....+..|.+.+++|.  ++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGL--SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            45566777888888999999999999988  8889999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh
Q 009250          171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (539)
Q Consensus       171 ~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~  250 (539)
                      +.++++++.++++|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+..+ ||+.|++.
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  159 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL  159 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877 99999998


Q ss_pred             HHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHH
Q 009250          251 SLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG  330 (539)
Q Consensus       251 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (539)
                      ++..++..+...+++                                                        +..+.    
T Consensus       160 ~~~~~~~~~~~~~~~--------------------------------------------------------~~~~~----  179 (352)
T cd06174         160 AILGLLLALLLLFLL--------------------------------------------------------RLLLL----  179 (352)
T ss_pred             HHHHHHHHHHHHHHH--------------------------------------------------------HHHHH----
Confidence            888777766554432                                                        11111    


Q ss_pred             HHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCch-hhHhhHHHHHH
Q 009250          331 GALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQK-LLIGSYLGMAI  408 (539)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~  408 (539)
                      .....+...........+.+.+.++. +.+.. ..+.......+...++    .++.+++.||++||+ .+..+..+..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~i  254 (352)
T cd06174         180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA-EAGLLLSLFGLGGILG----ALLGGLLSDRLGRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            12222222334555666777777665 44433 4555555555544333    999999999999999 88888888888


Q ss_pred             HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 009250          409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV  488 (539)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~  488 (539)
                      +.+.+....         +...................+....+..|..|+++|++..|+.+...+++..++|.+.+.+.
T Consensus       255 ~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         255 GLLLLALAP---------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             HHHHHHHhc---------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777766521         12222222222222233345677788999999999999999999999999999999999999


Q ss_pred             HHhCcchhhHHHHHHHHHHHHhhh
Q 009250          489 ETFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       489 ~~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      +..++...+.+.+++.+++.++.+
T Consensus       326 ~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         326 DTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             cccCcchHHHHHHHHHHHHHHHhe
Confidence            999999999988888888776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=1.5e-30  Score=251.19  Aligned_cols=348  Identities=24%  Similarity=0.311  Sum_probs=248.9

Q ss_pred             HHHHhhhhhcccccchhHH-HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 009250           93 SMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (539)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  171 (539)
                      +++.++..+......+.+| .+.+++|.  +..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGL--SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTT--TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            4566777888888889999 89999999  88889999999999999999999999999999999999999999997777


Q ss_pred             HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhH
Q 009250          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (539)
Q Consensus       172 ~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~  251 (539)
                      .+++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+ ||+.|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~  158 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA  158 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence            7778888999999999999999999999999999999999999999999999999999999999998777 999999999


Q ss_pred             HHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHH
Q 009250          252 LPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG  330 (539)
Q Consensus       252 ~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (539)
                      ++.++..++. .+++++|+....+.+.++.                        ++.+++..+.++.+++++..+..+..
T Consensus       159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA  214 (352)
T ss_dssp             HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred             chhhhhhhhHhhhhhhcccccccccccccc------------------------cccccccccccccccccchhhhhhhh
Confidence            9998887642 3444433210000000000                        00000001125556666655522222


Q ss_pred             HHHHHHhhhhhhHHHHHhHHHH-HHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHH
Q 009250          331 GALFLLQQFAGINGVLYFSSLT-FQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAIS  409 (539)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  409 (539)
                      .....+    .......+.|.+ .+..+.+.....+...++..+.+.++    .++.+++.||+++|+..........+.
T Consensus       215 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  215 FFLFFF----VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIG----SLLAGRLSDRFGRRRRLLIAILLLILG  286 (352)
T ss_dssp             HHHHHH----HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHH----HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            222222    333456666766 45556652235555555555555444    899999999999988777766666665


Q ss_pred             HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHH
Q 009250          410 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG  481 (539)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~  481 (539)
                      .+.+......     .+.........+.+.+ .....+....+..+..|++++|++.|+.+...++++.++|
T Consensus       287 ~~~~~~~~~~-----~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  287 ALGLLLLPFS-----SSPVWLIIALFLIGFG-FGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCCSHHH-----CHHHHHHHHHHHHHHH-HHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-----hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            5555442210     0112222222222222 2223566778889999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=1.4e-29  Score=246.45  Aligned_cols=370  Identities=12%  Similarity=0.085  Sum_probs=257.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHH-HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      +..+.+..++.........+.+| .+.+++|+  +..++|++.+.+.++..+++++.|+++||+|||++++++.++.+++
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~   86 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSL--SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG   86 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence            33444556666777777777665 55678999  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                      .++.+++++++.++++|++.|.+.+...+...++..|.+++++|++++++.....++|..++|.+++.+.. .+ |+..|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f  164 (395)
T PRK10054         87 FIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPF  164 (395)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHH
Confidence            99999999999999999999988888888899999999999999999999999999999999999998875 45 99999


Q ss_pred             HhhHHHHHHHHHHhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhH
Q 009250          248 YIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV  326 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (539)
                      ++.++..++..+... +++|+++.    ++.+                    +          +...+.++.++++..+.
T Consensus       165 ~~~~~~~~i~~i~~~~~~~~~~~~----~~~~--------------------~----------~~~~~~~~~~~~~~~~~  210 (395)
T PRK10054        165 WLAAICSAFPLVFIQIWVQRSEKA----IATE--------------------T----------GSVWSPSVLLQDKALLW  210 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccc----cccc--------------------h----------hhhhhhhhhccCceehH
Confidence            998887777654443 34443210    0000                    0          00011244566666655


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHH
Q 009250          327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGM  406 (539)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  406 (539)
                      ..+...+..+...........+.+.. ++.+.+. ...+.......+...    ......|++.||.++|+.+..+..+.
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~~~~  284 (395)
T PRK10054        211 FTCSGFLASFVSGAFASCISQYVMVV-ADSDFAE-KVVAVVLPVNAAMVV----SLQYSVGRRLNAANIRPLMTAGTLCF  284 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHh-cccchHH-HHHHHHHHhhhhhee----eehhHHHHHHccCCchhHHHHHHHHH
Confidence            44433333222111111112222211 2222222 233344444333332    22678899999999999888887777


Q ss_pred             HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 009250          407 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL  485 (539)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~  485 (539)
                      .++...+...         .+..+.+.......+.+.+. .|.....+.+..|++.++++.+..+ ...+|..++|.+.|
T Consensus       285 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G  354 (395)
T PRK10054        285 VIGLVGFIFS---------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSG  354 (395)
T ss_pred             HHHHHHHHHc---------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHH
Confidence            7766555431         11122222222233333222 4556677888899999999998755 67799999999999


Q ss_pred             HHHHHhCcchhhHHHHHHHHHHHHhhh
Q 009250          486 DLVETFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       486 ~l~~~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      .+.|+.|+...|++.+.+..++.++..
T Consensus       355 ~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        355 VILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            999999988888887776666665554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=1.5e-29  Score=248.30  Aligned_cols=361  Identities=17%  Similarity=0.167  Sum_probs=236.9

Q ss_pred             hhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHH--H---HHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 009250           97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSI--F---IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (539)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~---~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  171 (539)
                      +.+.++...++...+.+.+++..+.++.+.+.+.+.  +   .++..+++++.|+++||+|||+++..+.++..++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            456777788888888888886543355655655443  3   33334689999999999999999999999999999999


Q ss_pred             HhhhcHH--------HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC------
Q 009250          172 AQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE------  237 (539)
Q Consensus       172 ~~a~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~------  237 (539)
                      +++++++        .++++|+++|++.+...+...+++.|++++++|++..++.+.+..+|.++++.++..+.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9999876        47889999999999999999999999999999999999999999999999988765442      


Q ss_pred             --CCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchh
Q 009250          238 --DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW  315 (539)
Q Consensus       238 --~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (539)
                        +..+ ||+.|++.+++.++..+.....+|+|++..+                               ++++++.+.+.
T Consensus       163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~  210 (394)
T TIGR00883       163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKA-------------------------------QEKHKKKRGPI  210 (394)
T ss_pred             Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHH-------------------------------HhccccccCCH
Confidence              2345 9999998887776665555556665532100                               00111112334


Q ss_pred             hhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC
Q 009250          316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG  394 (539)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g  394 (539)
                      ++.++++... ......... ...........+.|.+. ++.+.+.. ..+.......+...++    .++.|++.||++
T Consensus       211 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~g  283 (394)
T TIGR00883       211 RETLTKHRKP-FLLGLGLVI-ATTTTFYLITTYLPTYLTQTLGLSAN-SALLVLMLSLILFFIT----IPLSGALSDRIG  283 (394)
T ss_pred             HHHHHhchHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence            4555544311 222222222 22223444555667776 44455443 4444444444444333    899999999999


Q ss_pred             CchhhHhhHHHHHHHH-HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHH-HH
Q 009250          395 RQKLLIGSYLGMAISM-LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF-SV  472 (539)
Q Consensus       395 ~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~  472 (539)
                      ||+.+.....+..+.. ..+.....     ....+.......+...+.+ ...+...++..|.+|++.|+++.++.+ ..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  357 (394)
T TIGR00883       284 RRPVLIIFTVLAALLAVPLLMALLD-----SGSFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLAYNLA  357 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeehhHhH
Confidence            9997765544443322 22221110     0011112222222222222 234556688899999999999999854 44


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-cchhhHHHHH
Q 009250          473 HWVCNFLVGLFFLDLVETFG-VAPVYAGFGG  502 (539)
Q Consensus       473 ~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~  502 (539)
                      ..+|..++|.+.|.+.++.| +...++....
T Consensus       358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       358 GAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            56788899999999999988 5555444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=1.3e-29  Score=247.13  Aligned_cols=360  Identities=14%  Similarity=0.081  Sum_probs=247.0

Q ss_pred             HHHhhhhhcccccchhHH-HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH
Q 009250           94 MSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA  172 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  172 (539)
                      ...++.........+.++ .+.+++|+  +..+.|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~   94 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGW--AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            444555555555566665 46788999  999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHH
Q 009250          173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASL  252 (539)
Q Consensus       173 ~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~  252 (539)
                      ++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++. ..+ ||+.|++.++
T Consensus        95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~  172 (400)
T PRK11646         95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAV  172 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHH
Confidence            99999999999999999999889999999999999999999999999999999999999999988 556 9999999887


Q ss_pred             HHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHH
Q 009250          253 PGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG  331 (539)
Q Consensus       253 ~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (539)
                      ..++..++. ++.||.+.     .+                              ..++.+..+++.++++..+...+..
T Consensus       173 ~~~~~~i~~~~~~~~~~~-----~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  217 (400)
T PRK11646        173 LFVLAAAFNAWLLPAYKL-----ST------------------------------VRTPVREGMTRVLRDKRFVTYVLTL  217 (400)
T ss_pred             HHHHHHHHHHHhCCcccc-----cc------------------------------cchhhHHHHHHHHcCchHHHHHHHH
Confidence            776655443 33443210     00                              0000112345556666544333222


Q ss_pred             HHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHh-hhcCCchhhHhhHHHHHHHH
Q 009250          332 ALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLM-DKEGRQKLLIGSYLGMAISM  410 (539)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~-dr~g~r~~~~~~~~~~~~~~  410 (539)
                      .....    .......+.|.+.++.+..+. ..+....+..+.+..+    ....+++. ||++.++.+..+..+.+++.
T Consensus       218 ~~~~~----~~~~~~~~~p~~~~~~~~~~~-~~g~l~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        218 TGYYM----LAVQVMLMLPIMVNDIAGSPS-AVKWMYAIEACLSLTL----LYPIARWSEKRFRLEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HHHHH----HHHHHHHhhhhhHHhhcCCch-HHHHHHHHHHHHHHHH----HHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            22111    122234466777777655443 4444444433332111    33344444 45665666666666666665


Q ss_pred             HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009250          411 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET  490 (539)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~  490 (539)
                      +++....        +.+.......++..+.+ ...|...++..+..|++++|++.|+.+....+|..++|.+.|.+.|+
T Consensus       289 ~~l~~~~--------~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        289 FPIGMVS--------NLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHhh--------hHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            5554321        11222222222222222 22355567788999999999999999999999999999999999987


Q ss_pred             hC----cchhhHHHHHHHHHHHHh
Q 009250          491 FG----VAPVYAGFGGVSLLSALF  510 (539)
Q Consensus       491 ~g----~~~~~~~~~~~~~~~~~~  510 (539)
                      .+    ....+...+++.++..+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        360 GKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HhhcCCcchHHHHHHHHHHHHHHH
Confidence            53    234444444444444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=252.17  Aligned_cols=365  Identities=19%  Similarity=0.202  Sum_probs=263.2

Q ss_pred             HHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--cHHHHHHHHHHhhhch
Q 009250          114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGI  191 (539)
Q Consensus       114 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~  191 (539)
                      ..++++  ++.+.+++.+++++|+.+++++.|+++||+|.|+++..+.++.++++++...+.  +++.+++.|++||++.
T Consensus        65 ~~~~~w--s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   65 AGEYDW--SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             CceecC--CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            346677  888889999999999999999999999999999999999999999999999874  5567899999999999


Q ss_pred             hhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC-cchhHHHHHhhHHHHHHHHHHhcc-cccchH
Q 009250          192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-PHWWRTMLYIASLPGFILALGMQF-TVESPR  269 (539)
Q Consensus       192 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-~~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~  269 (539)
                      |..+|+...+.+.|.|++||++..++..++..+|.+++.++++++.+. .| |+++|++.++.+++..+++++ ..|+|.
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999998 66 999999999999998877755 556663


Q ss_pred             HHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCC--CcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHH
Q 009250          270 WLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSD--LDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLY  347 (539)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (539)
                      .  ++.                ..++|.+..++...++..+  .+.+++++++++..|..++..+....    .+..+..
T Consensus       222 ~--h~~----------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~----~~~~l~~  279 (466)
T KOG2532|consen  222 K--HPN----------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW----GFYLLLT  279 (466)
T ss_pred             c--CCC----------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH----HHHHHHH
Confidence            1  111                1111122222222222222  46789999999887776665544444    5667778


Q ss_pred             hHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCc---------hhhHhhHHHHHHHHHHHHHHhc
Q 009250          348 FSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQ---------KLLIGSYLGMAISMLLVVGATS  418 (539)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r---------~~~~~~~~~~~~~~~~~~~~~~  418 (539)
                      |.|.|+++.-.-+....+...++..+...+.    .+++|.++||+.+|         ..-.++....++.++.+.+...
T Consensus       280 y~PtY~~~VL~f~v~~~G~~salP~l~~~~~----k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~  355 (466)
T KOG2532|consen  280 YLPTYLKEVLGFDVRETGFLSALPFLAMAIV----KFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD  355 (466)
T ss_pred             HhhHHHHHHhCCChhhhhHHHHHHHHHHHHH----HHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC
Confidence            8888888764444445556666666655444    89999999998653         1223344444444444443221


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH---HhCcch
Q 009250          419 LPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE---TFGVAP  495 (539)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~---~~g~~~  495 (539)
                            ...+..+.+..+. .++.....+..+.-..+. .+++.+..+|+.+.+..+.++++|.+.|.+..   ...|+.
T Consensus       356 ------~~~~~a~~~l~~~-~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~  427 (466)
T KOG2532|consen  356 ------EHRLLAVILLTIA-IGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI  427 (466)
T ss_pred             ------CcchHHHHHHHHH-HHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence                  1111222222222 222221222222222232 45679999999999999999999999999884   346899


Q ss_pred             hhHHHHHHHHHHHHhhheee
Q 009250          496 VYAGFGGVSLLSALFAYYFI  515 (539)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~  515 (539)
                      .|++.+++.+++.++..++-
T Consensus       428 VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  428 VFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHhchheeEee
Confidence            99999999998887655443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=1.7e-29  Score=245.65  Aligned_cols=371  Identities=18%  Similarity=0.119  Sum_probs=248.5

Q ss_pred             HHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 009250           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI  169 (539)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  169 (539)
                      ..++++.++..+.........+.+.++++.  ++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++++
T Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~   83 (393)
T PRK11195          6 YAIMAAQFFSALADNALLFAAIALLKELHY--PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL   83 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH
Confidence            345666777777665566666777888888  788889999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009250          170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (539)
Q Consensus       170 ~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~  249 (539)
                      +++++.+.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+. . |+..+.+
T Consensus        84 ~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~-~~~~~~i  158 (393)
T PRK11195         84 LMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-H-AEAALAV  158 (393)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHH
Confidence            88887664   77899999999999999999999999999999999999999999999999999998874 3 7777777


Q ss_pred             hHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHH
Q 009250          250 ASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI  329 (539)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (539)
                      .+...++..+....+||+|+..  +.+.++...             ..++.           +..++.+++++..+....
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-------------~~~~~-----------~~~~~~l~~~~~~~~~~~  212 (393)
T PRK11195        159 CALIYLLAALFNLFIPRLGARR--PGQSWNPIA-------------LLRDF-----------FHACRVLWRDKLGRFSLA  212 (393)
T ss_pred             HHHHHHHHHHHHhcCCCCcccc--cccCCCHHH-------------HHHHH-----------HHHHHHHHhCchhHHHHH
Confidence            7666555555556677765210  000000000             00000           012345566666554433


Q ss_pred             HHHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHH
Q 009250          330 GGALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI  408 (539)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  408 (539)
                      ...+...    ......+..+.+.++. +.+. ...+.......+...++    .++.+++.||.++++.+..+.. .++
T Consensus       213 ~~~~~~~----~~~~~~~~~~~~~~~~lg~s~-~~~G~~~~~~~~g~i~g----~~~~~~l~~~~~~~~~~~~g~~-~~~  282 (393)
T PRK11195        213 GTTLFWG----AGATLRFLVLAWAPVALGITL-NQPAYLQAVVAIGIAVG----AGAAARLVTLETVLRVLPAGIL-MGL  282 (393)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHH----HHHHHHHhcCCcccchHHHHHH-HHH
Confidence            3222222    1222333444444443 4433 35555555555444333    8889999999888877766643 333


Q ss_pred             HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccc-ccchhhHHHHHHHHHHHHHHHHHHH
Q 009250          409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRT-RGKIMGFSFSVHWVCNFLVGLFFLD  486 (539)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~  486 (539)
                      ....+..          .+..+......+..+++.+. .+...+...+..|++. +|++.++.+...+++..++..+.+.
T Consensus       283 ~~~~~~~----------~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~  352 (393)
T PRK11195        283 VVLLMAL----------QHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL  352 (393)
T ss_pred             HHHHHHH----------HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH
Confidence            3222222          11122222222222332222 2334455667666554 7999999999999999999999985


Q ss_pred             HHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          487 LVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       487 l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      + +..|-+..+.+.+...++...+.+.+
T Consensus       353 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        353 L-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             H-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4 77887777776665555555544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=1.9e-29  Score=245.68  Aligned_cols=357  Identities=14%  Similarity=0.069  Sum_probs=251.1

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +.++++..++.++..+...+.+|.+++++|+  +..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~--s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTL--TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            5677778888899999999999999999999  88999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc-----
Q 009250          169 IISAQ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-----  240 (539)
Q Consensus       169 ~~~~~---a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~-----  240 (539)
                      +++..   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+....     
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            88654   4689999999999999999999999999999999999999999999999999999998887653210     


Q ss_pred             --------------------chhHHHHHhhHHHHHHHHHHhcc--cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHH
Q 009250          241 --------------------HWWRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE  298 (539)
Q Consensus       241 --------------------~~wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (539)
                                          .+||++|++.+++.++..++..+  .|+.++        +                    
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~--------------------  214 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------S--------------------  214 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------c--------------------
Confidence                                13999999988877766544433  232110        0                    


Q ss_pred             HHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCC-hhHHHHHHHHHHHhcccc
Q 009250          299 EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT-DGALASLLVGVTNFAGLR  377 (539)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i  377 (539)
                            ++++.......+++++++..+...+..+++...    ......+.+.+.++.+.. +................+
T Consensus       215 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~----e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~v  284 (410)
T TIGR00885       215 ------DAKQISFSASLSRLARIRHYREGVIAQFFYVGV----QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFI  284 (410)
T ss_pred             ------ccccccchhhHHHHHhChhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence                  000001112334556666655544443343332    223334555665554322 222222222222222222


Q ss_pred             cccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccccccccc
Q 009250          378 SEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELS  457 (539)
Q Consensus       378 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (539)
                      |    +++++++.||+++|+.+.+..++..+..++....         +....... +.....+....+|..++...+..
T Consensus       285 G----R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---------~~~~~~~~-l~~~glf~s~~fp~i~sl~~~~~  350 (410)
T TIGR00885       285 S----RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---------GGHVGLYC-LTLCSAFMSLMFPTIYGIALKGL  350 (410)
T ss_pred             H----HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence            2    9999999999999998887777777666665542         11222222 22333334444578888888888


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh------CcchhhHHHH
Q 009250          458 SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF------GVAPVYAGFG  501 (539)
Q Consensus       458 p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~------g~~~~~~~~~  501 (539)
                      +++.+..+.++...  .+|+++.|.+.|.+.|..      +++..|.+..
T Consensus       351 g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~  398 (410)
T TIGR00885       351 GQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL  398 (410)
T ss_pred             hhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence            87755445554443  399999999999999964      3656665433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=2.7e-29  Score=250.34  Aligned_cols=375  Identities=14%  Similarity=0.114  Sum_probs=253.9

Q ss_pred             HHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-----cchHH-HHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRT-FQIDTIPL  164 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~  164 (539)
                      .+.+..+..++......+.+|...++.|.  +..++|.+ +.....+ ++.+++|+++||+     |||+. ++.+.++.
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~--~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENI--DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            34444456666777888889999999888  77777876 4444444 6899999999999     99885 66777777


Q ss_pred             HHHHHHHHhh---hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC-Cc
Q 009250          165 ILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DP  240 (539)
Q Consensus       165 ~~~~~~~~~a---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~  240 (539)
                      +++..++++.   ++++.+.+.+++.|++.+...+...+++.|++|++||+++.++...+..+|.++++.++.++.+ ..
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7887777775   4788899999999999999999999999999999999999999999999999999999988887 45


Q ss_pred             chhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhc
Q 009250          241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE  320 (539)
Q Consensus       241 ~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (539)
                      + ||..|++.+++.++..+..++.+|+++..   .+.++                .           ++....+++++++
T Consensus       172 G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~----------------~-----------~~~~~~~l~~~~~  220 (491)
T PRK11010        172 G-WQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKT----------------L-----------EQAVVAPLRDFFG  220 (491)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccc----------------h-----------hhhHHHHHHHHHc
Confidence            6 99999999988777766666667654210   00000                0           0000123455665


Q ss_pred             cCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHH-HHHHhcccccccchhhhHHHHhhhcCCchhh
Q 009250          321 EPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLV-GVTNFAGLRSEKYCALCASYLMDKEGRQKLL  399 (539)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~  399 (539)
                      ++..+.......+....   ......+..+++.+..+.+.. ..+... ....+...++    .+++|+++||+++|+.+
T Consensus       221 ~~~~~~~ll~~~l~~~~---~~~~~~~~~~~l~~~~G~s~~-~~g~~~~~~g~i~~iiG----~ll~G~L~dr~g~~~~l  292 (491)
T PRK11010        221 RNNAWLILLLIVLYKLG---DAFAMSLTTTFLIRGVGFDAG-EVGLVNKTLGLLATIVG----ALYGGILMQRLSLFRAL  292 (491)
T ss_pred             CcCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHH
Confidence            55554443333222221   122223344444455676655 344433 2333333233    99999999999998877


Q ss_pred             HhhHHHHHHHHHHHHHHhcCCCCccchhhHHHH-HHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHH
Q 009250          400 IGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL-GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNF  478 (539)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~  478 (539)
                      .++.++..+..+.+.......     .+...+. ..++.....+.+. +...++..+..+++.+++..|+.+....+|..
T Consensus       293 ~i~~~l~~l~~l~~~~l~~~~-----~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~  366 (491)
T PRK11010        293 MIFGILQGVSNAGYWLLSITD-----KNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRV  366 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            766555554443332211100     1111111 1222111122222 23456677888998999999999999999999


Q ss_pred             HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          479 LVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       479 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      +++.+.|.+.|..||...|.+.+++.+.+.++....
T Consensus       367 ~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        367 YVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888888887776665443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.5e-29  Score=246.33  Aligned_cols=335  Identities=14%  Similarity=0.195  Sum_probs=228.0

Q ss_pred             hcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 009250          101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM  180 (539)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l  180 (539)
                      +....+.|.+|.+.+++|+  ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGV--SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            4456677899999999999  88999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009250          181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG  260 (539)
Q Consensus       181 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~  260 (539)
                      ++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.+++.++..+.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888777 999999988887766544


Q ss_pred             h-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhh
Q 009250          261 M-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQF  339 (539)
Q Consensus       261 ~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (539)
                      . ++.+|+++.    .+++           +.+.               ++....+++.++++..+...+...+.    +
T Consensus       162 ~~~~~~~~~~~----~~~~-----------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~  207 (377)
T PRK11102        162 VFFFIPETLPK----ERRQ-----------PFHL---------------RTTIRNFASLFRHKRVLGYMLASGFS----F  207 (377)
T ss_pred             HHHhCCccCcc----cccC-----------CCCh---------------HHHHHHHHHHHcChHHHHHHHHHHHH----H
Confidence            4 445664310    0000           0000               00011234455555444333222211    1


Q ss_pred             hhhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhc
Q 009250          340 AGINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATS  418 (539)
Q Consensus       340 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  418 (539)
                      ........+.|.++ +..+.+.. ..+.......+...++    .++.+++.||+|+|+.+..+..+..+..+.+.....
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  282 (377)
T PRK11102        208 AGMFSFLTAGPFVYIELNGVSPQ-NFGYYFALNIVFLFVM----TIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL  282 (377)
T ss_pred             HHHHHHHHcCHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222333334444 44565543 5555555555554333    999999999999999888777665444333322111


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHH-HHHHHHHHH
Q 009250          419 LPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLF  483 (539)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~  483 (539)
                      ..    ...+........+..+.+. ..+.......|..| +.++++.++.+.... ++..+++.+
T Consensus       283 ~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        283 LD----LGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             Hh----hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            00    0111122222222222221 22233345567666 679999999877654 445555544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=9.3e-29  Score=241.95  Aligned_cols=353  Identities=15%  Similarity=0.114  Sum_probs=239.1

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      .++.+.++.+..++..+......|.+|.+.+++|.  ++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNV--REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            44556666666667777888888999999999999  8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr  244 (539)
                      .++.+++.++++++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.+++.+.+..+ ||
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~  162 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR  162 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence            99999999999999999999999999998888888999999999999999999999999999999999998888777 99


Q ss_pred             HHHHhhHHHHHHHHHH-hcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc
Q 009250          245 TMLYIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH  323 (539)
Q Consensus       245 ~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (539)
                      +.|++.++..++..+. .++.||+++..    + +                             +++.+..+++.++++.
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----------------------------~~~~~~~~~~~~~~~~  208 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPAD----A-R-----------------------------RTRVLASYRTLLSNRR  208 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCccc----c-c-----------------------------hhHHHHHHHHHHcChH
Confidence            9999988776655443 34566654200    0 0                             0001123445556655


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhh
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGS  402 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~  402 (539)
                      .+...+.......    .......+.+.++++ .+.+.. ..+.......+..    +++..+.+++.||.+++..  ..
T Consensus       209 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~----~~g~~~~~~l~~~~~~~~~--~~  277 (394)
T PRK11652        209 FNCYLLMLIGTLA----GIAVFEACSGVLMGAVLGLSSM-TVSILFILPIPAA----FFGAWFAGRPNKRFSTLMW--QS  277 (394)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHhChHHHHHHcCCCHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HH
Confidence            5543332222211    222333344555555 455443 3344333322222    2227777888888773222  22


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          403 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      .....++.+.+.......   ....+.......+...+.+. ..+....+..|..|+ ++|++.++.+....+|+.+++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~lg~~~~~~  352 (394)
T PRK11652        278 VICCLLAGLLMWIPGWFG---VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFPY-LAGTAGALLGGLQNIGSGLAAL  352 (394)
T ss_pred             HHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHH
Confidence            222222222221111000   00112222222222222222 345556667787774 6899999999999999999999


Q ss_pred             HHHHHHHH
Q 009250          483 FFLDLVET  490 (539)
Q Consensus       483 ~~~~l~~~  490 (539)
                      +.+.+...
T Consensus       353 ~~~~~~~~  360 (394)
T PRK11652        353 LSAMLPQT  360 (394)
T ss_pred             HHHHccCC
Confidence            88876543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5.6e-30  Score=248.08  Aligned_cols=374  Identities=17%  Similarity=0.151  Sum_probs=244.0

Q ss_pred             HHHHHHHHHHHhhhhhccccc-chhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           86 FPHVLIASMSNFLFGYHIGVM-NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      +.++..+++.++....+...+ .+.+..+.+|.+.  ...+.+++.++|+++++++++++|.|.||++..+.+....+++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~--~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w  121 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKL--VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW  121 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccch--hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence            344555566666666655333 3333445688887  7778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC------C
Q 009250          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE------D  238 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~------~  238 (539)
                      ++..++.....|++.+++.|++.|+.++..+|....+++.||.++||+..++++.+..++|.++|++++..+.      .
T Consensus       122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~  201 (495)
T KOG2533|consen  122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG  201 (495)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence            9999999889999999999999999999999999999999999999999999999999999999999998853      2


Q ss_pred             CcchhHHHHHhhHHHHHHHHHHh-cccccchHH--HHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhc--CCCCcc
Q 009250          239 DPHWWRTMLYIASLPGFILALGM-QFTVESPRW--LCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD--GSDLDS  313 (539)
Q Consensus       239 ~~~~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  313 (539)
                      ..+ |||.|++.++++++..++. +++|+.|.-  ...+.+.+-                ..++.++.....  ++.++.
T Consensus       202 ~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~----------------~~~~~~~~~~~~~~~~~~~~  264 (495)
T KOG2533|consen  202 LAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKEL----------------VVERLRESPSGGIENKFKWK  264 (495)
T ss_pred             cCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHH----------------HHHHHHhccCCCcccccCHH
Confidence            344 9999999999999887665 458888841  110000000                001111111111  113455


Q ss_pred             hhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh
Q 009250          314 QWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK  392 (539)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr  392 (539)
                      .+++.++++..|...+..++...    ..+.+.+++|.++++. +.+.. .+..+.....+.++++    .+++|+++||
T Consensus       265 ~~~~a~~dp~vw~~~l~~~~~~l----v~~~~~~~lpl~l~~~~~~s~~-~a~~ls~~~~~~g~v~----~i~ag~lsdr  335 (495)
T KOG2533|consen  265 GFKEALKDPGVWPFSLCYFFLKL----VNYGFSYWLPLYLKSNGGYSEL-QANLLSTPYDVGGIVG----LILAGYLSDR  335 (495)
T ss_pred             HHHHHHhchhHHHHHHHHHHHhh----ccccHHHHHHHHHHcCCCcChH-HhccccchHHhhhHHH----HHHHHHHHHH
Confidence            67778888877766554444444    4556778888888883 24332 4444444444444333    9999999999


Q ss_pred             ----cCCchhhHhhHHHHHHHH-HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcc-cccch
Q 009250          393 ----EGRQKLLIGSYLGMAISM-LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNR-TRGKI  465 (539)
Q Consensus       393 ----~g~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~-~~~~~  465 (539)
                          ..+|........+..+.. ..+..          ..........++.+.++.. ..+......++....+ .+-+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~  405 (495)
T KOG2533|consen  336 LKTIFARRLLFIVFLCLYAIIGAISLLA----------AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT  405 (495)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHh----------hccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence                445555544444443333 33322          1111122222222222222 2334445555544443 34444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHHHhCcchhh
Q 009250          466 MGFSFSVHWVCNFLVGLFFLD-LVETFGVAPVY  497 (539)
Q Consensus       466 ~g~~~~~~~~g~~~~~~~~~~-l~~~~g~~~~~  497 (539)
                      .+........+++++|.+.-. ....+++...|
T Consensus       406 ~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  406 VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF  438 (495)
T ss_pred             HhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence            455555555555555554433 22335666666

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=5.3e-28  Score=235.86  Aligned_cols=362  Identities=13%  Similarity=0.088  Sum_probs=231.3

Q ss_pred             HHHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHH-HHHHHHhhhhhhhhhhcchHHH-HHHHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTF-QIDTIPLILG  167 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~  167 (539)
                      ...+..++..+......|.+|. +.+++|+  +..++|++.+.+.+ ++.+++++.|+ +||+||||.+ ..+.++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~   95 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHA--RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLA   95 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHH
Confidence            3444466677777777787765 6788999  88899999876655 55566655555 9999999875 5566667788


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccc--cchhhhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG--SLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~  245 (539)
                      ..+.+++++++.+++.+.+.|...+...+...+++.|+.++++|.  ...++.+.+.++|.+++|++++.+.++.+ ||.
T Consensus        96 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~  174 (393)
T PRK15011         96 CTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTV  174 (393)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHH
Confidence            888889999999877665555555677888888888888766553  44578888999999999999999988878 999


Q ss_pred             HHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc-
Q 009250          246 MLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH-  323 (539)
Q Consensus       246 ~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  323 (539)
                      .|++.++..++..+.. .++||.++.   +.  ++                         +++       .+...++++ 
T Consensus       175 ~f~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~-------------------------~~~-------~~~~~~~~~~  217 (393)
T PRK15011        175 MYLSAAVAFIVCGVMVWLFLPSMRKE---LP--LA-------------------------TGT-------LEAPRRNRRD  217 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccCCC---Cc--cc-------------------------ccc-------cccccccccc
Confidence            9999988777666554 446665410   00  00                         000       000011111 


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhh
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGS  402 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~  402 (539)
                      .+..+......    +..+.....+.|.+.++ .+.+.. ..+...+...+...++    .++.|+++||++||+.+..+
T Consensus       218 ~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~~~~~~-~~g~~~~~~~~~~i~~----~~~~G~l~dr~g~~~~~~~~  288 (393)
T PRK15011        218 TLLLFVICTLM----WGTNSLYIINMPLFIINELHLPEK-LAGVMMGTAAGLEIPT----MLIAGYFAKRLGKRFLMRVA  288 (393)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhChHHHHHHH
Confidence            11111111111    11233344456666644 455543 4444444443333222    89999999999999877766


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          403 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      .....+....+.. .       .+.+..+....+...+.+.. .+....+..|..|++ ++++.++.+...++|..++|.
T Consensus       289 ~~~~~~~~~~~~~-~-------~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~  358 (393)
T PRK15011        289 AVAGVCFYAGMLM-A-------HSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGS  358 (393)
T ss_pred             HHHHHHHHHHHHH-H-------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHH
Confidence            5544443332221 1       01121222112111222211 122335567888865 999999999999999999999


Q ss_pred             HHHHHHHHhCcchhhHHHHHHHHHHHHhhh
Q 009250          483 FFLDLVETFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       483 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      +.|.+.+..|++..+.+.+++.+++.++.+
T Consensus       359 l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        359 LAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888877777666655443

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=2.2e-28  Score=235.80  Aligned_cols=333  Identities=17%  Similarity=0.169  Sum_probs=233.1

Q ss_pred             cccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHH
Q 009250          102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML  181 (539)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~  181 (539)
                      ......+.+|.+.+++|+  +..+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+++ .+++++.++
T Consensus        15 ~~~~~~~~lp~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~   91 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGM--SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLF   91 (355)
T ss_pred             ccccCcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence            336778999999999999  88899999999999999999999999999999999999999998888887 789999999


Q ss_pred             HHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcch-hHHHHHhhHHHHHHHHHH
Q 009250          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRTMLYIASLPGFILALG  260 (539)
Q Consensus       182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-wr~~f~~~~~~~~~~~~~  260 (539)
                      +.|++.|++.+...+....++.|+++ ++|++++++++.+.++|..+++.+++.+.+..+. ||+.|.+.++..++... 
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-  169 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-  169 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-
Confidence            99999999999988888889999986 5799999999999999999999988877665433 99999877665444322 


Q ss_pred             hcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhh
Q 009250          261 MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFA  340 (539)
Q Consensus       261 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (539)
                       .++++.++    +.                             +++++..+...++.++++..+...+...+.    ..
T Consensus       170 -~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  211 (355)
T TIGR00896       170 -AWIPQVRR----RV-----------------------------AANQTTTRLTPVRIWRSPLAWQVTVFFGLQ----SG  211 (355)
T ss_pred             -HHhhhhcc----cc-----------------------------CCCCCCCCCCCchhhcCHhHHHHHHHHHHH----HH
Confidence             22333210    00                             000001112344556665544333322222    22


Q ss_pred             hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC-CchhhHhhHHHHHHHHHHHHHHhcC
Q 009250          341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG-RQKLLIGSYLGMAISMLLVVGATSL  419 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~~~~~~  419 (539)
                      .+.....+.|.++++.+.+.. ..+....+..+...++    +++.|++.||++ ||+.+..+.++..++.+.+.+..  
T Consensus       212 ~~~~~~~~lp~~~~~~g~~~~-~~g~~~~~~~~~~i~~----~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--  284 (355)
T TIGR00896       212 LYYSLIGWLPAILISHGASAA-TAGSLLALMQLAQAAS----ALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--  284 (355)
T ss_pred             HHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--
Confidence            334455677888877766543 4455555555554333    999999999994 56666666666666665554421  


Q ss_pred             CCCccchhhHHHHHHHHHHHHHhccc-ccccccccc-cccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 009250          420 PLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIP-ELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV  493 (539)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~  493 (539)
                            .+.... ...+  .+++.+. .+....... +..+++.++...++.+.+.+++.+++|.+.|.+.|+.|.
T Consensus       285 ------~~~~~~-~~~l--~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       285 ------MHGLWA-WALV--LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             ------hhHHHH-HHHH--HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  111111 2222  2333322 343334443 334456678999999999999999999999999998873

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=3.3e-28  Score=236.34  Aligned_cols=361  Identities=14%  Similarity=0.047  Sum_probs=253.9

Q ss_pred             HHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHH----HHHHHHHHHH
Q 009250           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF----QIDTIPLILG  167 (539)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~  167 (539)
                      +.+.++...+...+..|.+|.+.+++|.  +..++|++.+++.+...++++++|+++||+||++..    ..+..+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~--s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGL--GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            4556667777778889999999999999  999999999999999999999999999999985433    222222222 


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                       ..+.++++++.+++.|+++|.+.+...|...++..++  +++|+++.+....+.++|.+++|++++.+.+..+ ||..|
T Consensus        86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f  161 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNIL  161 (382)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHH
Confidence             2445788999999999999999988899988887665  4679999999999999999999999999999888 99999


Q ss_pred             HhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHH
Q 009250          248 YIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA  327 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (539)
                      ++.++..++..+ .+.++|+++    +++.+                          ++++.......+++++++..+..
T Consensus       162 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~  210 (382)
T TIGR00902       162 AILTAGLAFMLI-GFLIKPTIP----PKDAI--------------------------PEDESQGDSAFIALLKNPMNLRF  210 (382)
T ss_pred             HHHHHHHHHHHH-HHHcCCCCC----CCccc--------------------------cccccccchhHHHHHcChHHHHH
Confidence            887655333333 223333320    00000                          00000112245677777776665


Q ss_pred             HHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHH
Q 009250          328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMA  407 (539)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  407 (539)
                      .+...+...    .......+.+.+.++.+.+.. ..+...++..+..    +++.++.+++.||+++|+.+.++.+...
T Consensus       211 l~~~~l~~~----~~~~~~~~~~~~l~~~g~s~~-~~g~l~~~~~~~~----i~~~~~~~~l~~r~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       211 LAAVCLIQG----AHAAYYGFSAIYWQAAGISAS-ATGLLWGIGVLAE----IIIFAFSNKLFQNCSARDLLLISAIACV  281 (382)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHCCCCHh-HHHHHHHHHHHHH----HHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence            554444333    333444466777777777654 4455544444443    3338899999999999999999998888


Q ss_pred             HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHH-HHHHHHHHHHHHHHH
Q 009250          408 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFS-VHWVCNFLVGLFFLD  486 (539)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~~~  486 (539)
                      +....+....        +.+..+....+....++.. .+....++.+. |++.++++.++++. ...+|..++|.+.|.
T Consensus       282 ~~~~~~~~~~--------~~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       282 GRWAIIGAIE--------AFPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHhHh--------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877775521        2222333334444444332 33345667777 88889999999874 556899999999999


Q ss_pred             HHHHhCcchhhHHHHHHHHHHHHh
Q 009250          487 LVETFGVAPVYAGFGGVSLLSALF  510 (539)
Q Consensus       487 l~~~~g~~~~~~~~~~~~~~~~~~  510 (539)
                      +.|+.|+ ..|++.+++.+++.++
T Consensus       352 l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       352 IYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999986 6677777777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=9.2e-29  Score=239.96  Aligned_cols=347  Identities=19%  Similarity=0.193  Sum_probs=225.3

Q ss_pred             HHHHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           90 LIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +..+++.++.........+..|. +++++|+  ++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGL--STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCC--CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            44666666777777888899995 9999999  88999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh-cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC---------
Q 009250          169 IISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---------  238 (539)
Q Consensus       169 ~~~~~a~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---------  238 (539)
                      +++++++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++.....++|..+++.+++.+..         
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999 99999999999999866 456678899999999999999999987777777777666654432         


Q ss_pred             -CcchhHHHH-HhhHHHHHHHH-HHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchh
Q 009250          239 -DPHWWRTML-YIASLPGFILA-LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW  315 (539)
Q Consensus       239 -~~~~wr~~f-~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (539)
                       ..+ ||+.| +..+++.++.. +...+.+|+|+.   +.  ++.+..   .....             ....++.....
T Consensus       161 ~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~---~~~~~-------------~~~~~~~~~~~  218 (366)
T TIGR00886       161 AHLA-WGWAFVIVPAGILLLPALLIFFVGADTPPG---KP--ATGKLS---FKGAR-------------WSVGTGALGDQ  218 (366)
T ss_pred             cccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcc---cc--cchhcc---ccccc-------------ccccchhHHHH
Confidence             235 99999 44344444433 333445665421   00  000000   00000             00000001133


Q ss_pred             hhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC
Q 009250          316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG  394 (539)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g  394 (539)
                      .+.++++..+...+.......    .......+.+.++++. +.+.. ..+....+..+.+.++    +++.|++.||++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~g~l~~r~g  289 (366)
T TIGR00886       219 LKVFRDRHTWILALLYSVTFG----SFLGVSSIFAMFFKDQFGLSKV-TAGAYASLGGLLGSLA----RPLGGAISDRLG  289 (366)
T ss_pred             HHHHhccchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHH----hhccchHHHhhc
Confidence            455666655544333222222    2334445566666544 54443 4444444444444333    899999999999


Q ss_pred             CchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHH
Q 009250          395 RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW  474 (539)
Q Consensus       395 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  474 (539)
                      +|+.+..+......+..++.....    +............+.....+.+ .+..+....+..| +++|++.|+.+.+.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~  363 (366)
T TIGR00886       290 GARKLLMSFLGVAMGAFLVVLGLV----SPLSLAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGN  363 (366)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhcc
Confidence            998777776666555555443211    0001111122222222222322 2345567778877 579999999998877


Q ss_pred             HH
Q 009250          475 VC  476 (539)
Q Consensus       475 ~g  476 (539)
                      +|
T Consensus       364 ~g  365 (366)
T TIGR00886       364 LG  365 (366)
T ss_pred             CC
Confidence            65

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.96  E-value=4.5e-28  Score=238.85  Aligned_cols=381  Identities=15%  Similarity=0.040  Sum_probs=229.0

Q ss_pred             HHHHHHhhhhhcccccchhHHHH-HHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI  169 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  169 (539)
                      .+.+..++..+......+.+|.. .+++|+  ++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~   91 (420)
T PRK09528         14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGL--SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG   91 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            33344455555555566666654 555899  999999999999999999999999999999999999887766655443


Q ss_pred             HHH---hhhc-----HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc
Q 009250          170 ISA---QAHS-----LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH  241 (539)
Q Consensus       170 ~~~---~a~~-----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~  241 (539)
                      ...   .++.     +...++++++.|.+.....+....+..+ . .+++++.++......++|..+++++++.+.+. +
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~  168 (420)
T PRK09528         92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N  168 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C
Confidence            221   1111     1112233444444333333333333322 2 34578888999999999999999999988764 5


Q ss_pred             hhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhcc
Q 009250          242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE  321 (539)
Q Consensus       242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (539)
                       |++.|++.+++.++..++.++.+++++.....  .++                       +.+++++.......+.+++
T Consensus       169 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~l~~  222 (420)
T PRK09528        169 -PQINFWLGSGSALILLVLLFFAKPDAPSTAKV--ANA-----------------------LGANASAVSLKDALALLKL  222 (420)
T ss_pred             -chHhHHHHHHHHHHHHHHHhcccccccchhhh--ccc-----------------------hhcccccccHHHHHHHccC
Confidence             99999998888877766665544332100000  000                       0000011111233456666


Q ss_pred             CchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh
Q 009250          322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG  401 (539)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~  401 (539)
                      +..+...+..................+...+..+.+.+ ....+.+.++..+...++    .++.|++.||+++|+.+..
T Consensus       223 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~----~~~~g~l~dr~g~~~~~~~  297 (420)
T PRK09528        223 PKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQG-TRVFGYLNSFQVFLEALI----MFFAPFIINRIGAKNALLL  297 (420)
T ss_pred             CCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHHHHH----HHHHHHHHHHhCcchhhHH
Confidence            66554433222222211111111222222222222222 224444444444433333    8999999999999999888


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhH-HHHHHHHHHHH
Q 009250          402 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGF-SFSVHWVCNFL  479 (539)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~  479 (539)
                      +.++..+..+++.+..        +.+.......+  .+...+. .+....+..|..|++.+++..+. .+....+|.++
T Consensus       298 ~~~l~~~~~~l~~~~~--------~~~~~~~~~~l--~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i  367 (420)
T PRK09528        298 AGTIMAVRIIGSGFAT--------GPLEVSILKLL--HAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF  367 (420)
T ss_pred             HHHHHHHHHHHHHhcc--------cHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH
Confidence            8887777766655421        11222222222  2222222 23344667788899989888766 67778899999


Q ss_pred             HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeC
Q 009250          480 VGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       480 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      +|.+.|.+.|..||+..|.+.+++.++..++.+...++
T Consensus       368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999998888877776665554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.96  E-value=7.5e-28  Score=235.54  Aligned_cols=376  Identities=14%  Similarity=0.076  Sum_probs=243.8

Q ss_pred             HHHHHhhhhhcccccch-hHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHH
Q 009250           92 ASMSNFLFGYHIGVMNG-PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIPLILGAI  169 (539)
Q Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~  169 (539)
                      +++..+.......+..| ..+.+.+++|+  +..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHF--SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            34445555556666544 44567778899  89999999999999999999999999999965 7888889999989999


Q ss_pred             HHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhc--------CCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc
Q 009250          170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV--------APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH  241 (539)
Q Consensus       170 ~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~  241 (539)
                      ++.+.++++.+++.|++.|++.+...+...++..++        .....|.+..|      .+|.++++.+++.+.....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~  158 (418)
T TIGR00889        85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS  158 (418)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence            999999999999999999998877777666554322        22233455554      3677777777776633333


Q ss_pred             hhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhcc
Q 009250          242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE  321 (539)
Q Consensus       242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (539)
                       |+. |++.++..++..++.+++||+|+.   +.+++.                   +.    ++   ..+...++++++
T Consensus       159 -~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~-------------------~~----~~---~~~~~~~~~~k~  207 (418)
T TIGR00889       159 -NIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKM-------------------SI----KV---MLGLDAFILFKN  207 (418)
T ss_pred             -hHH-HHHHHHHHHHHHHHHhcCCCCCCC---cccccc-------------------CH----HH---HhhhhHHHHhcC
Confidence             554 555565555555556677776520   000000                   00    00   001123456666


Q ss_pred             CchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCCh-------hHHHHHHHHHHHhcccccccchhhhHHHHhhhcC
Q 009250          322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD-------GALASLLVGVTNFAGLRSEKYCALCASYLMDKEG  394 (539)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g  394 (539)
                      +.++..++..++...    .......+.+.+.++.+.+.       ....+...++..+...++    .+..|++.||+|
T Consensus       208 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~----~~~~g~l~dr~g  279 (418)
T TIGR00889       208 KRMAIFFFFSMLLGA----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFF----ILTIPFFLKRFG  279 (418)
T ss_pred             CCeeeHHHHHHHHHh----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHhC
Confidence            665554444333322    12223344566666655332       123344444444444333    899999999999


Q ss_pred             CchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHH-HH
Q 009250          395 RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSF-SV  472 (539)
Q Consensus       395 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~-~~  472 (539)
                      +|+.+..+.++..+...++.....      ............+..+.+.+ ..+....++.|.+|++.|+++.|+.+ ..
T Consensus       280 ~r~~l~~~~~~~~v~~~l~~~~~~------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~  353 (418)
T TIGR00889       280 IKKVMLLSLVAWALRFGFFAYGDP------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC  353 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            999999998888777655544110      01111212222222222222 23445567889999999999999997 56


Q ss_pred             HHHHHHHHHHHHHHHHHHh------CcchhhHHHHHHHHHHHHhhheeeeCCCC
Q 009250          473 HWVCNFLVGLFFLDLVETF------GVAPVYAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       473 ~~~g~~~~~~~~~~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      ..+|.+++|.+.|.+.++.      ||+..|.+.+++.++..++.+++.+++++
T Consensus       354 ~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       354 NGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            7899999999999999984      47788888888888887777777776543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.7e-29  Score=225.23  Aligned_cols=345  Identities=16%  Similarity=0.091  Sum_probs=239.0

Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhH
Q 009250          119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLV  198 (539)
Q Consensus       119 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~  198 (539)
                      .+.++.++|++.+++.+...+.+++.|.+.||+|+|..+++|++++..+++++++.++|+.++++|.+||+|.++..+++
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            34467789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCC-ccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCCh
Q 009250          199 PIYISEVAPTK-YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGML  277 (539)
Q Consensus       199 ~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  277 (539)
                      .++++|.+|++ +|++++|+.-.+.++|.++||++|+.+.+..| .+.+|++.+++.++-..+.+++.|+.+        
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~--------  251 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE--------  251 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence            99999999965 47999999999999999999999999999999 999999999999999888877665421        


Q ss_pred             hHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcC
Q 009250          278 NDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG  357 (539)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (539)
                                                .+++...+..+++++++.+..+....   ...+.+.+ .....-..+.++.+.-
T Consensus       252 --------------------------~~~~~~~~~~~~~~Ll~dP~I~~~ag---ai~~~n~~-lafLePtlslwm~e~m  301 (464)
T KOG3764|consen  252 --------------------------MDPDSTEQGTPMWSLLMDPYILLIAG---AITFSNSS-LAFLEPTLSLWMLETM  301 (464)
T ss_pred             --------------------------cCccccccCccHHHHHhCchHhhhhc---chhhccch-HHHhCcccHHHHHHhc
Confidence                                      01112233345777787776443222   11221111 1111112233333322


Q ss_pred             CChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhh--HhhHHHHHHHHHHHHHHhcCCCCccchh-hHHHHHH
Q 009250          358 ITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLL--IGSYLGMAISMLLVVGATSLPLDEDFSH-NLSILGT  434 (539)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  434 (539)
                      .......++    ..+...++..++..+.|.+.||++..+.+  ..+++..++++....+..      .... +.....+
T Consensus       302 ~~p~w~~G~----~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~------~~~~L~vp~~~l  371 (464)
T KOG3764|consen  302 FTPGWEVGL----AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT------SIAQLWVPNFGL  371 (464)
T ss_pred             cCCCcceee----eecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh------hHHHHhhhhHHH
Confidence            232212222    22233333334499999999999943333  333333333333333321      1111 1111111


Q ss_pred             HHHHHHHhcccccccccccccccCcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh
Q 009250          435 LFYIFTFAIGAGPVTGLVIPELSSNR---TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  511 (539)
                      .+.+........|.. .+..+....+   .-|.+.++......+|.++||.+.|.+.+..|+.+...+.++..++..-++
T Consensus       372 ~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  372 GFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             HHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence            111111222223433 3333433333   678999999999999999999999999999999998888888887776654


Q ss_pred             he
Q 009250          512 YY  513 (539)
Q Consensus       512 ~~  513 (539)
                      .+
T Consensus       451 ~l  452 (464)
T KOG3764|consen  451 LL  452 (464)
T ss_pred             HH
Confidence            43

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.96  E-value=6.5e-27  Score=227.46  Aligned_cols=355  Identities=15%  Similarity=0.068  Sum_probs=239.4

Q ss_pred             HhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcch----HHHHHHHHHHHHHHHHH
Q 009250           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR----RTFQIDTIPLILGAIIS  171 (539)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~  171 (539)
                      ++...+..+++.|.+|.+.+|+|.  +..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  ....+
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~--s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGY--TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCC--CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence            344455668888999999999999  999999999999999999999999999999984    3333222222  22334


Q ss_pred             HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhH
Q 009250          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (539)
Q Consensus       172 ~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~  251 (539)
                      ..+++++.+++.|++.|++.+...+...+++.++  .++|+++.+......++|..+||++++++.++.+ ||..|++.+
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~  165 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT  165 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence            4568899999999999999998999888888776  3568889999999999999999999999998888 999999877


Q ss_pred             HHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHH
Q 009250          252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG  331 (539)
Q Consensus       252 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (539)
                      +..++..+...+.||+++    +++.                           +++.++...+++++++++..+......
T Consensus       166 ~~~~~~~~~~~~~~~~~~----~~~~---------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~  214 (382)
T PRK11128        166 AGVASMLLGQLLRPTIMP----QGES---------------------------RQQESAGWPAWKALLKEPTVWRFLLCV  214 (382)
T ss_pred             HHHHHHHHHHHccCCCCC----cccc---------------------------ccccccccchHHHHHcChhHHHHHHHH
Confidence            655554444334444211    0000                           000011124567788887776655544


Q ss_pred             HHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHH
Q 009250          332 ALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISML  411 (539)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  411 (539)
                      .+....    ......+.+.+.++.+.+.. ..+...++..+..    ++..++.+++.||+++|+.+..+.+..++..+
T Consensus       215 ~l~~~~----~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~----~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~  285 (382)
T PRK11128        215 SLLQGS----HAAYYGFSAIYWQAAGYSAS-TIGYLWSLGVVAE----VLIFAFSNRLFRRWSARDLLLLSAICGVVRWG  285 (382)
T ss_pred             HHHHHH----hHhHHHHHHHHHHHCCCCHh-HHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            433332    22333455666677776644 4455545444443    33388999999999999998888887777665


Q ss_pred             HHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 009250          412 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSV-HWVCNFLVGLFFLDLVET  490 (539)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~l~~~  490 (539)
                      ++....        +.+..+...++.+.+++. ..+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|.
T Consensus       286 ~~~~~~--------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~  355 (382)
T PRK11128        286 LMGSTT--------ALPWLIVIQILHCGTFTV-CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH  355 (382)
T ss_pred             HHHhhh--------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            554311        223233333333333332 233444555565 455578888888644 456778999999999999


Q ss_pred             hCcchhhHHHHHHHHHHH
Q 009250          491 FGVAPVYAGFGGVSLLSA  508 (539)
Q Consensus       491 ~g~~~~~~~~~~~~~~~~  508 (539)
                      .|+ ..++..+++.+++.
T Consensus       356 ~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        356 LGA-GVFWVMALVALPAL  372 (382)
T ss_pred             ccH-HHHHHHHHHHHHHH
Confidence            886 45665555555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=5e-27  Score=229.88  Aligned_cols=367  Identities=15%  Similarity=0.072  Sum_probs=246.4

Q ss_pred             HHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-----cchH-HHHHHHHHHHHH
Q 009250           94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRR-TFQIDTIPLILG  167 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~  167 (539)
                      ..++..++........+|.+.++.|+  +..++|++..+...  .+.++++|+++||+     |||| ++..+.++.+++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGL--DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            34566677778888899999999999  99999999777776  59999999999999     8875 788888888888


Q ss_pred             HHHHHhh---hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc-chh
Q 009250          168 AIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-HWW  243 (539)
Q Consensus       168 ~~~~~~a---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~-~~w  243 (539)
                      ..+.++.   .+++.+++..++.++..+...+...+++.|++|++||+++.++...+..+|.++++.++..+.+.. + |
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w  160 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-W  160 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-H
Confidence            8888877   357778888888899999999999999999999999999999999999999999999888887754 6 9


Q ss_pred             HHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc
Q 009250          244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH  323 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (539)
                      |..|++.++..++..+..++.+|+++.   +++.++                    ..       ++.+..++++++++.
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~--------------------~~-------~~~~~~~~~l~~~~~  210 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRS--------------------LG-------EAVVGPLRDFFSRRG  210 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccc---ccccch--------------------hH-------HHHHHHHHHHHhCcC
Confidence            999999888877666655556665421   000000                    00       001234566778877


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHH-hcccccccchhhhHHHHhhhcCCchhhHhh
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTN-FAGLRSEKYCALCASYLMDKEGRQKLLIGS  402 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~  402 (539)
                      ++..++...+.......   ...+..+.+.++.+.+.. ..+...+... +...+    +.++++++.||+++|+.+..+
T Consensus       211 ~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~~-~~g~~~~~~~~~~~i~----g~~~~g~l~~r~g~~~~l~~~  282 (402)
T PRK11902        211 AWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSAG-EVGIVNKTLGLAATIV----GALAGGTLMVRLGLYRSLMLF  282 (402)
T ss_pred             HHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCHH-HHHHHHhHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHH
Confidence            76655544333322211   112233445555666654 4444433222 22222    289999999999999887766


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHH--HHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHH
Q 009250          403 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF--YIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL  479 (539)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~  479 (539)
                      ..+..+..+.+......+    .+.+.......+  +..+...+ .......++.+.+|.    +..++.+.+..++..+
T Consensus       283 ~~~~~l~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~  354 (402)
T PRK11902        283 GVLQAVSNLGYWVLAVTP----KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVY  354 (402)
T ss_pred             HHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHH
Confidence            666555544333211111    011211111111  11122211 123344555555554    4456666677788887


Q ss_pred             HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh
Q 009250          480 VGLFFLDLVETFGVAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       480 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  511 (539)
                      ++.+.|.+.|..|+...|.+.+.+++++.++.
T Consensus       355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            78899999999999998988887777776554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.96  E-value=2.2e-26  Score=225.19  Aligned_cols=375  Identities=12%  Similarity=0.044  Sum_probs=241.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHH-HHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      ++.+....++.......+.|.+|.+ .+++|.  +..+.|++.+++.++..+++++.|+++||+|||+.++.+....+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGL--SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4455556666677777777888765 556888  8899999999999999999999999999999999999887776654


Q ss_pred             HHHHH---hh-----hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          168 AIISA---QA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       168 ~~~~~---~a-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      .....   +.     +.+..+++.|++.|++.+...+....+..|..  ++++...+......++|..+++.+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  159 (396)
T TIGR00882        82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI  159 (396)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc
Confidence            44321   22     12334566788999988888888888877753  3345677888888899999999999987654


Q ss_pred             cchhHHHHHhhHHHHHHHHHHhcccc-cchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhh
Q 009250          240 PHWWRTMLYIASLPGFILALGMQFTV-ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL  318 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (539)
                       + ||+.|++.+++.++..++.++.. |+|+.       ++..                 +  ..+.++.+.+..+.+++
T Consensus       160 -~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----------------~--~~~~~~~~~~~~~~~~~  211 (396)
T TIGR00882       160 -D-PQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVA-----------------N--ALGANASAFSLKLALEL  211 (396)
T ss_pred             -C-chHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhh-----------------c--ccccccCCCCHHHHHHH
Confidence             5 99999999888887765554433 33210       0000                 0  00000111122345677


Q ss_pred             hccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCC---ChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCC
Q 009250          319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI---TDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGR  395 (539)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~  395 (539)
                      ++++..+...+.......    .+.....+.+.+.++...   .+....+....+..+...++    .+..+++.||+++
T Consensus       212 l~~~~~~~~~l~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~----~~~~g~l~~r~g~  283 (396)
T TIGR00882       212 FRQRKFWMFVLYVVGVAC----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALI----MFCAPLIINRIGA  283 (396)
T ss_pred             HcCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence            777765544332222211    222222233444443321   11223344444444443222    7889999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhH-HHHHHH
Q 009250          396 QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF-SFSVHW  474 (539)
Q Consensus       396 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~  474 (539)
                      |+.+.++..+.++...+.....        +.+.......+...+.... ......+..+..+++.++++.+. .+....
T Consensus       284 ~~~l~~~~~l~~l~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~  354 (396)
T TIGR00882       284 KNALLIAGTIMSVRIIGSSFAT--------TALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQ  354 (396)
T ss_pred             chhHHHHHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHH
Confidence            9998888877777665544311        1222222222222221111 11233445666788888887776 677889


Q ss_pred             HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhh
Q 009250          475 VCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       475 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      +|+++++.+.|.+.|..|+...|.+.+++.++..+...
T Consensus       355 lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       355 LAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888877766543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=3.5e-26  Score=224.06  Aligned_cols=380  Identities=16%  Similarity=0.110  Sum_probs=231.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +..+++......+.....+..++.+..|+|-   .....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+
T Consensus        46 ~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~---~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~  122 (599)
T PF06609_consen   46 FAAFSLAVIAAYFVLVLPASILPYINADIGG---SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGS  122 (599)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHhcCC---CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHH
Confidence            3334444444455666667788999999985   4456899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009250          169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY  248 (539)
Q Consensus       169 ~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~  248 (539)
                      +.++.++|...++++..+.|+|.|.... ....++|..|.|.|+...++......+...+++.++..+..+.+ |||.|+
T Consensus       123 Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~  200 (599)
T PF06609_consen  123 IVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFY  200 (599)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHH
Confidence            9999999999999999999999886664 45568999999999888877776666666677777776666666 999999


Q ss_pred             hhHHHHHHHHHHhcccccchHHHHhcCC---hhHHHHHHHHH------------------cCCcch----HHHHHHH---
Q 009250          249 IASLPGFILALGMQFTVESPRWLCKGGM---LNDAKAVIANL------------------WGESEI----NKAIEEF---  300 (539)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~------------------~~~~~~----~~~~~~~---  300 (539)
                      +.++...+.++..+++..+|++-..+++   ..+..+.++.+                  .+....    .......   
T Consensus       201 ~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG  280 (599)
T PF06609_consen  201 IFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIG  280 (599)
T ss_pred             HHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHH
Confidence            9998877776555444334433322221   12222222221                  010000    0000000   


Q ss_pred             ----H--HHHHhc-CCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCCh-----hHHHHHHH
Q 009250          301 ----Q--LVIKKD-GSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD-----GALASLLV  368 (539)
Q Consensus       301 ----~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  368 (539)
                          .  .-.+.. ..+.+.-..+++++++.  ........+......+....+|......-++.+.     ........
T Consensus       281 ~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~--~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~  358 (599)
T PF06609_consen  281 FVLLVAFVVWEWFGAPKDPLFPHRLFKDRRG--FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPV  358 (599)
T ss_pred             HHHHHHHHHhhhhccCCCCcCCHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhH
Confidence                0  001111 11222334456665322  1111112222222122223333333333232221     12233344


Q ss_pred             HHHHhcccccccchhhhHHHHhhhcCCch-hhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccc
Q 009250          369 GVTNFAGLRSEKYCALCASYLMDKEGRQK-LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP  447 (539)
Q Consensus       369 ~~~~~~~~i~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (539)
                      +.....+       .++.|.+..+++|-| .++++.+++.+.+.++....   .   .+....+...++.+.+.+.... 
T Consensus       359 ~fg~~~g-------~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~---~---~n~~~~i~~~~l~g~giG~~~~-  424 (599)
T PF06609_consen  359 GFGSCAG-------AVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR---P---DNKNAAIAFLVLAGFGIGGILV-  424 (599)
T ss_pred             HHHHHHH-------HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc---C---CCcchHHHHHHHHHHhHHHHHH-
Confidence            4444444       788888988887754 44566666555544444321   1   1112222223333333322222 


Q ss_pred             ccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009250          448 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE  489 (539)
Q Consensus       448 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~  489 (539)
                      .......-..|++.-|++.|+..+++.+|+.++..++..+..
T Consensus       425 ~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  425 PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            233455567889999999999999999999999988876553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=6.4e-28  Score=236.59  Aligned_cols=401  Identities=17%  Similarity=0.165  Sum_probs=275.8

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      .|.+.+...+......-....++...+.++++|+-  +..+++|+.++....+.+.+++.+.+.||||.|.+.+.|.++.
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~--s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~  121 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGS--SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVA  121 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCC--CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHH
Confidence            34444444444444444445566788999999998  7777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHH-HHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          165 ILGAIISAQAHSLDEMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      +++.++.+|++++|++++. -++.|+|.|..+.....++..||++| |+.+.|+...+.++|.++-|.+...+.+..| |
T Consensus       122 ~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~  199 (509)
T KOG2504|consen  122 ALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSKYG-W  199 (509)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHHhC-c
Confidence            9999999999999998885 79999999999999999999887655 9999999999999999999999999999999 9


Q ss_pred             HHHHHhhHHHHHHHHHHhccccc-chHHHHhcCChhHHHHHHHH-----------HcCCcc---hH---HHHHHHHHHHH
Q 009250          244 RTMLYIASLPGFILALGMQFTVE-SPRWLCKGGMLNDAKAVIAN-----------LWGESE---IN---KAIEEFQLVIK  305 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~---~~~~~~~~~~~  305 (539)
                      |+.+++.+.+.+-.++....+.+ .++.  .+. .++..+....           ......   .+   ......+...+
T Consensus       200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (509)
T KOG2504|consen  200 RGALLIFGGISLNVLVAGALLRPLSPPK--KPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD  276 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCC--Cch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence            99999988888766665555433 2110  000 0000000000           000000   00   00000000000


Q ss_pred             hcC-CCCcchh----hhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhccccccc
Q 009250          306 KDG-SDLDSQW----SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEK  380 (539)
Q Consensus       306 ~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  380 (539)
                      +.. ...+...    .++++++.+....+    .......++.....+++.+....+.++. .+..+.++.++...++  
T Consensus       277 ~~~~~~~~~~~~~~d~~ll~~~~fl~~~~----~~~~~~~g~~~p~~~l~~~~~~~g~~~~-~aa~l~Siigi~~i~g--  349 (509)
T KOG2504|consen  277 KWRNSPLQAFLSMLDLSLLKDPKFLLLAL----SNLFAYLGFNVPFVYLPSYAKSLGLSSN-DAAFLLSIIGVSDIIG--  349 (509)
T ss_pred             cccccchhhhhhhhhHHHHcCchHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCChh-hhHHHHHHHHHhhhhh--
Confidence            000 0111111    45666654443333    3333333677777888888888888765 4444444444444433  


Q ss_pred             chhhhHHHHhhhcCC--chhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc-ccccccccccc
Q 009250          381 YCALCASYLMDKEGR--QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELS  457 (539)
Q Consensus       381 ~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  457 (539)
                        +++.|+++|+...  +....++.+..+++.+.+..          ......+......+++..+.. ......+.|+.
T Consensus       350 --Ri~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~----------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~  417 (509)
T KOG2504|consen  350 --RIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF----------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV  417 (509)
T ss_pred             --hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              9999999999874  34455555555555544444          222233444444444444443 34445778999


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhh
Q 009250          458 SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       458 p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~  511 (539)
                      +.++-..+.|+...+..++..++|++.|.+.|..| |...|...+...+++..+.
T Consensus       418 g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  418 GLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             ChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence            99999999999999999999999999999999988 8888888887777776544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.7e-26  Score=205.76  Aligned_cols=365  Identities=17%  Similarity=0.142  Sum_probs=272.0

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      .+..++...++.++......+.+|.+++.|++  +..+++++..+++.||.+.+++.|++.+|+|+|+-++.|+.+++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~l--s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDL--TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            35666667788899999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---hhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC-----
Q 009250          168 AIISA---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-----  239 (539)
Q Consensus       168 ~~~~~---~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-----  239 (539)
                      +.+..   -..+|..++++-++.|.|.+...+.++.+++...++++-.+.+++.+..+++|.+++|++++.+..+     
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence            99985   5578999999999999999999999999999999999899999999999999999999999887762     


Q ss_pred             -------------cchhHHHHHhhHHHHHHHHHHhcc--cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHH
Q 009250          240 -------------PHWWRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVI  304 (539)
Q Consensus       240 -------------~~~wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (539)
                                   ...||++|...+...++..+....  .|+.+.                                 ..
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------------------------~~  218 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------------------------AA  218 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc---------------------------------cc
Confidence                         112888888887777766665544  333210                                 00


Q ss_pred             HhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchh
Q 009250          305 KKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCA  383 (539)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~  383 (539)
                      .++.+..+....+++++++.+...+..+++......    ...+++.++.+ .+.+. .......+......++|    +
T Consensus       219 ~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva----~gsfl~~y~~~~~g~~~-~~aa~~~s~~~~~~~vG----R  289 (422)
T COG0738         219 PSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVA----IGSFLVSYLEELLGLNE-QQAAYYLSFFWVGFMVG----R  289 (422)
T ss_pred             ccccccccchHHHHHhChHHHHHHHHHHHHHhHHHH----HHHHHHHHHHhcCCccH-HHHHHHHHHHHHHHHHH----H
Confidence            111111112567888888888777766666664443    44455666666 44333 24444444444444333    9


Q ss_pred             hhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccc
Q 009250          384 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRG  463 (539)
Q Consensus       384 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  463 (539)
                      +++.++..|+...+.+....++..+.++...+.          +....+......+.+.....|..++...+..| + ..
T Consensus       290 Fig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~----------~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~t  357 (422)
T COG0738         290 FIGSALMSRIKPEKYLAFYALIAILLLLAVALI----------GGVVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HT  357 (422)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh----------cChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-cc
Confidence            999999999999888887776666655555552          12333333334444444557888888888888 3 34


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 009250          464 KIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA  508 (539)
Q Consensus       464 ~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  508 (539)
                      ...|....+.-+|+++.|++.|++.|..|....+.....+|.+..
T Consensus       358 s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         358 SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            444445566779999999999999999998777765555555554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=4.3e-26  Score=252.35  Aligned_cols=347  Identities=16%  Similarity=0.059  Sum_probs=227.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHH---HHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHH
Q 009250          124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI---DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI  200 (539)
Q Consensus       124 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~  200 (539)
                      ...++..+++.+++.++++++|+++||+|||+++..   +.++..+..+.+...+|+++++++|+++|++.+...|+..+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457889999999999999999999999999997533   32333333333444589999999999999999999999999


Q ss_pred             HHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHH
Q 009250          201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDA  280 (539)
Q Consensus       201 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  280 (539)
                      ++.|++++++|++++++.+++.++|.++||++++++....+ |++.|+..++..++.+++.+++++++.-  .++...+ 
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-  207 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGNA--APDLKID-  207 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeec-
Confidence            99999999999999999999999999999999999988877 9999966666666666666666665310  0000000 


Q ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCC
Q 009250          281 KAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT  359 (539)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  359 (539)
                                   .....           .....++.+.+++.++...+...+..+    ....+..+.|.++++. +.+
T Consensus       208 -------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~  259 (1140)
T PRK06814        208 -------------RNIIR-----------STITLLKYAKADKRIWLAILGISWFWL----VGAVVLSQLPLLAKETLGGD  259 (1140)
T ss_pred             -------------cchHH-----------HHHHHHHHHhcCchHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHcCCc
Confidence                         00000           001245566666666655544433332    2233444566666654 444


Q ss_pred             hhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcC-CC-----------Cccchh
Q 009250          360 DGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL-PL-----------DEDFSH  427 (539)
Q Consensus       360 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~  427 (539)
                      . ...+.+.+...+++.++    .++.|++.++..+++.+..+.++.++..+.+.+.... ..           ....+.
T Consensus       260 ~-~~~g~~~~~~~~g~~ig----~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (1140)
T PRK06814        260 E-NVATLFLAVFSVGVAVG----SFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG  334 (1140)
T ss_pred             h-HHHHHHHHHHHHHHHHH----HHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc
Confidence            3 35555555555555444    9999999988777666655555554444433321000 00           000122


Q ss_pred             hHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHH
Q 009250          428 NLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAPVYAGFGGVSLL  506 (539)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~  506 (539)
                      +...+..++++.+.+ ...+...+++.+..|++.+|+++|+.+++.+++..+++.+.+.+.+. .++...+++.+.+.++
T Consensus       335 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        335 WRILIDLFGLAAAGG-LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            222222222322222 22344668888999999999999999999999999999999988753 3455555544444344


Q ss_pred             HH
Q 009250          507 SA  508 (539)
Q Consensus       507 ~~  508 (539)
                      ..
T Consensus       414 ~~  415 (1140)
T PRK06814        414 VA  415 (1140)
T ss_pred             HH
Confidence            33

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=4.4e-26  Score=224.86  Aligned_cols=374  Identities=19%  Similarity=0.140  Sum_probs=268.7

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +..++++.++..+...+....++.+..+..-  |+...+++.++..+...+.++++|.++||++||++++.+-++.++..
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~--S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTG--SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA   89 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            4455666777777777777778877776644  89999999999999999999999999999999999999998887665


Q ss_pred             HHHHhh-----hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          169 IISAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       169 ~~~~~a-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      +..++.     .+.+.+++.-++.|++.+...|+..+++.|..|+++...++++.+...++..++||.++|.+....| -
T Consensus        90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~  168 (524)
T PF05977_consen   90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-A  168 (524)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-H
Confidence            555432     4788899999999999999999999999999999999999999999999999999999999888777 7


Q ss_pred             HHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCc
Q 009250          244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH  323 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (539)
                      .+.|++.++..++..+.....+++++    +.+. .                        .++..+..+..++-+.+++.
T Consensus       169 ~~~f~inalsfl~~i~~l~~~~~~~~----~~~~-~------------------------~e~~~~~l~~G~ryv~~~~~  219 (524)
T PF05977_consen  169 AAAFLINALSFLISILALLRWKPPPP----PSSL-P------------------------RERFFSALREGLRYVRSSPP  219 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccc----cccc-c------------------------hhhhhhhHHHHHHHHhcchH
Confidence            88888887766655444433332210    0000 0                        00001112234455555555


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhH
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSY  403 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~  403 (539)
                      .+..++...++.+    ....+...+|.+.++.-..++...+++.+...+++++|    .++.+++.+|+++++++..+.
T Consensus       220 l~~~l~~~~~~~l----~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~G----al~~~~l~~~~~~~~lv~~~~  291 (524)
T PF05977_consen  220 LRSVLLRSFLFNL----FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILG----ALLLPRLRRRLSSRRLVLLAS  291 (524)
T ss_pred             HHHHHHHHHHHHH----hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHH----HHHHHHhhcccCcchhhHHHH
Confidence            5544443333222    12223345677766543344446677766666666444    888899999999888888888


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      ++.+++.+.+.+.          ...++.+..++..|.+.. ......+...+..|++.||+++++++++...+..+|..
T Consensus       292 ~~~a~~~~~lal~----------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsl  361 (524)
T PF05977_consen  292 LLFALALLLLALS----------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSL  361 (524)
T ss_pred             HHHHHHHHHHhcc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            8777777766652          222222333333333222 23445577889999999999999999999999999999


Q ss_pred             HHHHHHHHhCcchhhHHHHHHHHHHHHhhh
Q 009250          483 FFLDLVETFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       483 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      +.|.+.+..|....+.+.++..+++.++.+
T Consensus       362 l~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  362 LWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888777666555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=9.4e-26  Score=250.78  Aligned_cols=360  Identities=15%  Similarity=0.006  Sum_probs=233.1

Q ss_pred             ccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---hhhcHHHHH
Q 009250          105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA---QAHSLDEML  181 (539)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~a~~~~~l~  181 (539)
                      ......+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++++.++..++.+++.   ++++++.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  107 (1146)
T PRK08633         28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF  107 (1146)
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            33445566777777754556679999999999999999999999999999999998877666555443   457899999


Q ss_pred             HHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC--------cchhHHHHHhhHHH
Q 009250          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD--------PHWWRTMLYIASLP  253 (539)
Q Consensus       182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~--------~~~wr~~f~~~~~~  253 (539)
                      ++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++...        .++|++.+.+.++.
T Consensus       108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (1146)
T PRK08633        108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA  187 (1146)
T ss_pred             HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988765        23255555444433


Q ss_pred             H-HHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHH
Q 009250          254 G-FILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGA  332 (539)
Q Consensus       254 ~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (539)
                      . ++.+++.+++|+.|+....+.+.++          .               .........++.+++++..+..++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~  242 (1146)
T PRK08633        188 VAVLGLIFAYRLPKVPAAAPEVFDKKK----------Y---------------LFPKLLWRNLKLLRSDRVLWLAIIGLS  242 (1146)
T ss_pred             HHHHHHHHHhcCcCCCCCCcccccccc----------c---------------ccHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3 3334444556766532100000000          0               000000123445566665554444333


Q ss_pred             HHHHhhhhhhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHH
Q 009250          333 LFLLQQFAGINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISML  411 (539)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  411 (539)
                      +..+    .......+.+.++ +..+.+.....+.+.....+..+++    .++.+++.||+++++.+.++.++.+++.+
T Consensus       243 ~~~~----~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g----~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  314 (1146)
T PRK08633        243 YFWF----ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIG----SLLAGRLSGRHIELGLVPLGALGLALSLF  314 (1146)
T ss_pred             HHHH----HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHhCCceEccchhHHHHHHHHHHH
Confidence            3322    2222333444444 4445544314444444444444333    89999999999998888877777776666


Q ss_pred             HHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009250          412 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF  491 (539)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~  491 (539)
                      ++....        +.+..++..++++.+.+. ..+...+++.+..|++.||+++|+.+++.+++.++++.+.+.+.. .
T Consensus       315 ~~~~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~  384 (1146)
T PRK08633        315 LLPTAP--------SLASVLVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-L  384 (1146)
T ss_pred             HHHHhh--------hHHHHHHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            555421        112222222222222222 234456778899999999999999999999999888777665543 3


Q ss_pred             C--cchhhHHHHHHHHHH
Q 009250          492 G--VAPVYAGFGGVSLLS  507 (539)
Q Consensus       492 g--~~~~~~~~~~~~~~~  507 (539)
                      +  +...+++.+.+.++.
T Consensus       385 ~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        385 GLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             ccCHHHHHHHHHHHHHHH
Confidence            3  333444444443333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.95  E-value=1.7e-25  Score=221.86  Aligned_cols=414  Identities=12%  Similarity=0.061  Sum_probs=252.2

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHH-H--hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAK-E--LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPL  164 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~  164 (539)
                      +..+.+..++..+......+.+|.+.+ +  +|+  +..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~--s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGF--SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            455556666777776666777776644 4  788  88899999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCc---cccchhhhHHHHHHHHHHHHHhcCCCCCCcc
Q 009250          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDDPH  241 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~  241 (539)
                      +++.++.+++++++.++++|++.|+|.|...+...++++|++|+++   |+.++++++.+.++|.++|+++++++.+..+
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998764   8889999999999999999999999988777


Q ss_pred             hhHHHHHhhHHHHHHHHHHhcccc----cchHHHHhcCChhHHHHHHH-------------H-H-cCCcchHHHHHH---
Q 009250          242 WWRTMLYIASLPGFILALGMQFTV----ESPRWLCKGGMLNDAKAVIA-------------N-L-WGESEINKAIEE---  299 (539)
Q Consensus       242 ~wr~~f~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~-------------~-~-~~~~~~~~~~~~---  299 (539)
                       ||+.|++.++..++..+...+..    +.|+. .++.+.++......             . . ............   
T Consensus       170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (475)
T TIGR00924       170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT  247 (475)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcccccccCCCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence             99999998865555444333322    11110 00000000000000             0 0 000000000000   


Q ss_pred             ----HHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCC--h-hHHHHHHHHHH
Q 009250          300 ----FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--D-GALASLLVGVT  371 (539)
Q Consensus       300 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~  371 (539)
                          ........++    ......+.+ ... ++...+.....+..+.......+.+.++. +..  . ......+..+.
T Consensus       248 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n  321 (475)
T TIGR00924       248 LAVIIFFFRLAFKP----RLDAVARNK-MYA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLN  321 (475)
T ss_pred             HHHHHHHHHHHHhc----cCCHHHHhH-HHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhh
Confidence                0000000000    000011111 111 12222222222223333333344443332 211  0 00122222222


Q ss_pred             HhcccccccchhhhHHHHhhhcCC-----chhh--HhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc
Q 009250          372 NFAGLRSEKYCALCASYLMDKEGR-----QKLL--IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG  444 (539)
Q Consensus       372 ~~~~~i~~~~~~~~~g~l~dr~g~-----r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (539)
                      .+...+.    .++..++..|.+|     +...  .+|+++.+++++.+.+...........+.++++...++.......
T Consensus       322 ~~~iil~----~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~  397 (475)
T TIGR00924       322 PFWVVVG----SPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELM  397 (475)
T ss_pred             HHHHHHH----HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            2222111    4443333333333     3333  667777777776665432111111112333344444444444455


Q ss_pred             cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeee
Q 009250          445 AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV  516 (539)
Q Consensus       445 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  516 (539)
                      ..|...++..+..|++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus       398 ~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       398 ISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            568888999999999999999999999999999999999887777777777777777777766665544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.95  E-value=2.4e-26  Score=215.85  Aligned_cols=372  Identities=11%  Similarity=0.059  Sum_probs=233.0

Q ss_pred             HHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchh-hHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPIL-EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +++|+-.|+.- .+...+...|.+.+|+|+  ++.+ .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+
T Consensus        30 ~~lC~fGF~~e-~R~n~s~a~p~L~~elgl--T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        30 LYLCFYGFMAQ-FRPGESFITPYLLTVLNF--TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHH-hhchHHHHHHHHHHHcCC--CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            33444444433 456667788999999999  8888 8999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009250          169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY  248 (539)
Q Consensus       169 ~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~  248 (539)
                      ++.++++++..+.+.|++.|+++|... +...++..|+|++||+++.+++.++..+|.+++++++++ ....+ ||+.+.
T Consensus       107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y~~  183 (511)
T TIGR00806       107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhHHH
Confidence            999999999999999999999999999 999999999999999999999999999999999999998 44556 887654


Q ss_pred             h---hHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHH-HHHH-HHHHHHhcCCCCcchhhhhhccCc
Q 009250          249 I---ASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINK-AIEE-FQLVIKKDGSDLDSQWSELLEEPH  323 (539)
Q Consensus       249 ~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  323 (539)
                      +   ......+++++.+++|..++-+.-+++.+...............+. ...+ .+......-......+++..+++.
T Consensus       184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~  263 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ  263 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence            4   3344445556667777655433222211000000000000000000 0000 000000000000112223334433


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhH
Q 009250          324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSY  403 (539)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~  403 (539)
                      .    +...+++....+++..+..|...+.+....+...+.+.+-++..+.+++.    .+..|++-.++.+-..+.++.
T Consensus       264 v----l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~----a~~ag~~~~~w~~~~~l~l~v  335 (511)
T TIGR00806       264 L----LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAIT----SFIAGFVNIRWARWSKLLIAV  335 (511)
T ss_pred             h----hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHH----HHHHHhhcCCchhhHHHHHHH
Confidence            2    22334444555577777888888877765432226666666666666555    888888866553333333333


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      ....-+.+++....      ..+.+...+..+++...+... .++....+++....+.-|..+|+++++.-+-..+-..
T Consensus       336 ~s~~~~gll~~m~~------t~~Iw~~Y~~yvlf~~~y~fl-itia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~  407 (511)
T TIGR00806       336 VSAIQAGLVFWMSQ------SHDIWVLYVTYVLFRGIYQFL-VPIATFQIASSLSKELCALVFGINTFVATALKTIITA  407 (511)
T ss_pred             HHHHHHHHhhhhhc------ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence            32222222222211      113333333334443333332 2334455556666676799999988877665554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.94  E-value=1.4e-26  Score=235.65  Aligned_cols=306  Identities=18%  Similarity=0.140  Sum_probs=212.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      ++.+++..+...+..+..++.++.++++|++  ++.+.|++.+.+.++++++.++.|+++||+|||+++.++.+++++++
T Consensus        35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~l--ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKL--STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhhhhCC--CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            3445556677777788999999999999999  88888999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh---------------------------------------------------cHHHHHHHHHHhhhchhhhhhh
Q 009250          169 IISAQAH---------------------------------------------------SLDEMLWGRFLVGLGIGVNTVL  197 (539)
Q Consensus       169 ~~~~~a~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~  197 (539)
                      +++++.+                                                   .+..++++|+++|+|.+..++.
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~  192 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL  192 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence            9998763                                                   2456788999999999999999


Q ss_pred             HHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc---------------------chhHHHHHhhHHHHHH
Q 009250          198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFI  256 (539)
Q Consensus       198 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~  256 (539)
                      +.+++.|++|+++|+++++++..+..+|.++|+++++++.+..                     +.||..|++.+++.++
T Consensus       193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l  272 (633)
T TIGR00805       193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL  272 (633)
T ss_pred             CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998776432                     1278889988888887


Q ss_pred             HHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHH
Q 009250          257 LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLL  336 (539)
Q Consensus       257 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (539)
                      ..+..+++|++.+....+.+.+..++.  ... ..+.+ ...+    .....++.....+.+++++.++...+...+...
T Consensus       273 ~~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~-~~~~~-~~~~----~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~  344 (633)
T TIGR00805       273 TSIPFFFFPKALPKEGKRVNVDVHETE--KLE-KSEDK-SRKK----NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSL  344 (633)
T ss_pred             HHHHHHhCccccCCcccccchhhhhhh--ccc-ccccc-cchh----hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            776666666542100000000000000  000 00000 0000    000001112345667787766554444333333


Q ss_pred             hhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhc-ccccccchhhhHHHHhhhcCC--chhhHhhHHHHHHHHHH
Q 009250          337 QQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFA-GLRSEKYCALCASYLMDKEGR--QKLLIGSYLGMAISMLL  412 (539)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~  412 (539)
                          .+..+..+.|.++++....+...++.+.++..++ .+++    .+++|+++||++.  |+.+..+.++..++.++
T Consensus       345 ----~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG----~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       345 ----AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLG----YLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHH----HhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence                4555666788888764333444565555544432 2223    8999999999984  45666666666665444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=1.3e-25  Score=222.63  Aligned_cols=409  Identities=13%  Similarity=0.051  Sum_probs=242.6

Q ss_pred             HHHHHHHHHhhhhhcccccchhH-HHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLI  165 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~  165 (539)
                      .++.+++..+...+....+.+.+ ..+.+++|+  +..+.+++.+.+.....+..+++|+++|| +||||+++++.++++
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~--~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGF--SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            35555555566666655444444 566788998  78888999999998888999999999999 999999999999999


Q ss_pred             HHHHHHHhhhcHHH-HHHHHHHhhhchhhhhhhHHHHHHhcCCCC--ccccchhhhHHHHHHHHHHHHHhcCCCCCCcch
Q 009250          166 LGAIISAQAHSLDE-MLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (539)
Q Consensus       166 ~~~~~~~~a~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~  242 (539)
                      +++++++++++... ++++|+++|+|.|...+...+++.|.+|++  +|++++++++++.++|..+||.+++++.++.+ 
T Consensus        93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-  171 (489)
T PRK10207         93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-  171 (489)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence            99999999877555 557999999999999999999999999877  45889999999999999999999999999888 


Q ss_pred             hHHHHHhhHHHHHHHHHHhcccccchHHHH--hcCChhHHHHHH-------------HHHcCCcchHHHH-HH---HH--
Q 009250          243 WRTMLYIASLPGFILALGMQFTVESPRWLC--KGGMLNDAKAVI-------------ANLWGESEINKAI-EE---FQ--  301 (539)
Q Consensus       243 wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~---~~--  301 (539)
                      ||+.|++.++..++..+...+.++..+...  .+++..+.....             ............. ..   ..  
T Consensus       172 w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  251 (489)
T PRK10207        172 YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI  251 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999999976543333333333322111000  001111110100             0000000000000 00   00  


Q ss_pred             HHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCC------hhHHHHHHHHHHHhc
Q 009250          302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT------DGALASLLVGVTNFA  374 (539)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~  374 (539)
                      .-..++.+.     .+.+|++.+....+  .+.....+..+.......+.+.++ ....      .+.....+..+..++
T Consensus       252 ~f~~~~~~~-----~~~~r~r~~~~~~l--~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii  324 (489)
T PRK10207        252 IFFREAFKL-----DKTGRNKMFVAFVL--MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVV  324 (489)
T ss_pred             HHHHHHhcC-----CHHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHH
Confidence            000001111     02233322221111  111222222233333344444442 2221      111111222223323


Q ss_pred             ccccccchhhhHHHHhhhcCCchh-------hHhhHHHHHHHHHHHHHHhc-CCCCccchhhHHHHHHHHHHHHHhcccc
Q 009250          375 GLRSEKYCALCASYLMDKEGRQKL-------LIGSYLGMAISMLLVVGATS-LPLDEDFSHNLSILGTLFYIFTFAIGAG  446 (539)
Q Consensus       375 ~~i~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (539)
                      .       .++.+++.||+++|+.       +.+|+++.+++++.+..... ....+...+.++++...++.........
T Consensus       325 ~-------~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~  397 (489)
T PRK10207        325 A-------SPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFIS  397 (489)
T ss_pred             H-------HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            3       7788999999998873       66777777777654432111 1101111122223323222222223335


Q ss_pred             cccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH----------HhCcchhhHHHHHHHHHHHHhhhe
Q 009250          447 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE----------TFGVAPVYAGFGGVSLLSALFAYY  513 (539)
Q Consensus       447 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~  513 (539)
                      +.....+.+..|++.+|.++|+.+...++|+.++..+......          ...+...|...++..++..++.+.
T Consensus       398 ~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        398 ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6667778889999999999999999999999999888765421          112445566666666655555443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.8e-24  Score=191.67  Aligned_cols=368  Identities=19%  Similarity=0.198  Sum_probs=273.4

Q ss_pred             HHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHH
Q 009250           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (539)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  165 (539)
                      +..+..+.+..+-.--..+..+|.++.+++|+|+  +...+|+++++..+...+.+++..+++.|+|.++.+..++++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gl--s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGL--SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            3334444444454555668889999999999999  88899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009250          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (539)
Q Consensus       166 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~  245 (539)
                      ++.++-... +.+.++.+-.+.|.|.+...+....++-+.||+| -+..+++|.+..++|..+++.+...+.++.++||.
T Consensus        89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            999999887 8888999999999999999999999999999976 89999999999999999999999988888755999


Q ss_pred             HHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchh
Q 009250          246 MLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR  325 (539)
Q Consensus       246 ~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (539)
                      ...+-+.++++.++.++.-...++                                   ....+.+..+...+++++.-|
T Consensus       167 aL~~WAl~allAl~~WlPq~~r~~-----------------------------------~~~~~~~~~~~~~vw~~~~aW  211 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALREQ-----------------------------------AASIATKLVSVRKVWRSPLAW  211 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccc-----------------------------------ccccccccccccccccCchhH
Confidence            999999998888776654321110                                   011112223345577887766


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc-CCchhhHhhHH
Q 009250          326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE-GRQKLLIGSYL  404 (539)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-g~r~~~~~~~~  404 (539)
                      ...+...+    +...++....++|.++.+.|.+.. .++.+.++..+.....    ++....+.+|. .+|+.......
T Consensus       212 ~vtLfmGl----qS~~~Y~~~~WLP~ili~~G~sa~-~aG~llsl~~l~~~~~----~ll~P~la~R~~n~r~~~~~~~~  282 (395)
T COG2807         212 QVTLFMGL----QSLLYYIVIGWLPAILIDRGLSAA-EAGSLLSLMQLAQLPT----ALLIPLLARRSKNQRPLVVLALL  282 (395)
T ss_pred             HHHHHHHh----hHHHHHHHHHHHHHHHHHcCCCHH-HhhhHHHHHHHHHHHH----HHHHHHHHHHhcccchHHHHHHH
Confidence            65444333    344677788899999999999876 7777777777776555    88888998875 45666666667


Q ss_pred             HHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccc-cccCcccccchhhHHHHHHHHHHHHHHHH
Q 009250          405 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIP-ELSSNRTRGKIMGFSFSVHWVCNFLVGLF  483 (539)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  483 (539)
                      ++.++.+.+.+.+.       .  ..+...++++.+.+ +..+.....+. +...++..+.-.|+.+.++++-.++||.+
T Consensus       283 ~~l~G~~G~~~~P~-------~--~~~lw~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l  352 (395)
T COG2807         283 LMLVGLVGLLLAPG-------Q--LPILWALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL  352 (395)
T ss_pred             HHHHHHHHHHHhhh-------h--HHHHHHHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence            77777776665331       1  12222233322222 23344444443 34456678888999999999999999999


Q ss_pred             HHHHHHHhC-cchhhHHHHHHHHHHHHhh
Q 009250          484 FLDLVETFG-VAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       484 ~~~l~~~~g-~~~~~~~~~~~~~~~~~~~  511 (539)
                      +|.+.|..| |...+.....+.++..+.-
T Consensus       353 ~G~lhDa~gsw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         353 FGFLHDATGSWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             HhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            999999987 5555555554444444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.94  E-value=2.1e-25  Score=221.76  Aligned_cols=336  Identities=17%  Similarity=0.149  Sum_probs=220.5

Q ss_pred             hHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh----hcch-HHHHHHHHHHHHHHHHHHhhhc------H
Q 009250          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCR-RTFQIDTIPLILGAIISAQAHS------L  177 (539)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~  177 (539)
                      ..+.+.+++|+  ++.++|++.++..+..++..++.|+++||    +||| +.++.+....+++.+++.+.++      .
T Consensus        22 l~~~~~~~~g~--s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGL--SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCC--CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            44667788999  89999999999999999999999999997    6874 4677788888888888877664      4


Q ss_pred             HHHHHHHHHhhhchhhhhhhHHHHHHhcC-CCCccccchhhhHHHHHHHHHHHHHhcCCCC-------CCcchhHHHHHh
Q 009250          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-------DDPHWWRTMLYI  249 (539)
Q Consensus       178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-------~~~~~wr~~f~~  249 (539)
                      ..+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+.       +..+ ||+.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i  178 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence            56677888999988888888888888887 4688999999988888888766655443322       2345 9999999


Q ss_pred             hHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHH
Q 009250          250 ASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF  328 (539)
Q Consensus       250 ~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (539)
                      .++++++..+.. ++.+|+++.     ..+                         .++++.+.++.++.+++++.++...
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~~-----~~~-------------------------~~~~~~~~~~~~~~l~~~~~~~~~~  228 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYSE-----IPK-------------------------NIEKKLSLKQIFKALFKNDQLLILC  228 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCCC-----CCc-------------------------ccccCCCHHHHHHHHhCCHHHHHHH
Confidence            998887776554 445654310     000                         0000111123455666776665544


Q ss_pred             HHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHH
Q 009250          329 IGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI  408 (539)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  408 (539)
                      ....+...    .......+.+++.+..... ....+....+..+...++    .++.+++.||+|+|+.+..+..+..+
T Consensus       229 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~ii~----~~~~~~l~~r~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       229 LAYLFYNL----AFNIKNGVQVYYFTYVLGD-PELFSYMGSIAIVAGLIG----VLLFPRLVKKFGRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHH----HHHHHcchhheeEeeecCC-hHHHHHHHHHHHHHHHHH----HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            43333332    2222222334443332222 223333333333333333    89999999999999998888877777


Q ss_pred             HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC-------cccccchhhHHHHHHHHHHHHHH
Q 009250          409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVG  481 (539)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~  481 (539)
                      +.+.+.+..       .+.+.......+...+.+. ..+..+++.+|..+       ++.+|.+.|+.+.+..+|..+++
T Consensus       300 ~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~  371 (437)
T TIGR00792       300 GYLIFFFAG-------SNLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAG  371 (437)
T ss_pred             HHHHHHHcc-------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence            666554411       0112222222222222221 23455566666654       55689999999999999999999


Q ss_pred             HHHHHHHHHhCcc
Q 009250          482 LFFLDLVETFGVA  494 (539)
Q Consensus       482 ~~~~~l~~~~g~~  494 (539)
                      .+.|.+.+..||.
T Consensus       372 ~i~g~ll~~~G~~  384 (437)
T TIGR00792       372 FLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999988764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.94  E-value=6.4e-26  Score=202.41  Aligned_cols=334  Identities=16%  Similarity=0.073  Sum_probs=204.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHH
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~  201 (539)
                      +....|.+.+.|++...+.++.+|.++||+|||+++++|++..++..++.+++.|+..++++|++.|+..| ...+..++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence            45567999999999999999999999999999999999999999999999999999777777999999988 67788899


Q ss_pred             HHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC---CcchhHHHH--HhhHHHHHH-HHHHhcccccchHHHHhcC
Q 009250          202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---DPHWWRTML--YIASLPGFI-LALGMQFTVESPRWLCKGG  275 (539)
Q Consensus       202 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---~~~~wr~~f--~~~~~~~~~-~~~~~~~~~~~p~~~~~~~  275 (539)
                      ++|.+++|+|+++++.+...+++|.++||.+|+++..   ..+.+...+  ++..++... .....+++||+-+   .++
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk  221 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRK  221 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chh
Confidence            9999999999999999999999999999999999987   233121221  222222222 3345566788732   111


Q ss_pred             ChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHH---HHHHHHHhhhhhhHHHHHhHHHH
Q 009250          276 MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI---GGALFLLQQFAGINGVLYFSSLT  352 (539)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  352 (539)
                      +.++...          ..+..++.    ++..+..........+++.....+.   ...+..+.....+....++...+
T Consensus       222 ~~~~~~~----------~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l  287 (451)
T KOG2615|consen  222 RNDEHST----------LQEAADDR----LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFL  287 (451)
T ss_pred             hcccccc----------hhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence            1111100          00000000    0000000011112233333222111   11122222222333334444444


Q ss_pred             H-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCch-----hhHhhHHHHHHHHHHHHHHhcCCCCccch
Q 009250          353 F-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQK-----LLIGSYLGMAISMLLVVGATSLPLDEDFS  426 (539)
Q Consensus       353 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (539)
                      . +..++++. +.+-++...++.+       .++.+.+..+..|.+     .+.....++.-.++++...         .
T Consensus       288 ~~~rfg~ss~-~~G~vl~~tGl~m-------~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~---------~  350 (451)
T KOG2615|consen  288 THGRFGYSSM-QQGKVLSTTGLLM-------LVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA---------R  350 (451)
T ss_pred             hcCccCCChh-hheeeeehhhHHH-------HHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc---------c
Confidence            2 33444443 5555566666655       555555555544433     3333333333333333321         1


Q ss_pred             hhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009250          427 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET  490 (539)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~  490 (539)
                      ....+.....+-...+....+....++....|+++||++.|+..+...++.++||.+.|.+..+
T Consensus       351 ~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  351 TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            1122222222222222223455567788999999999999999999999999999999877654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.94  E-value=2.4e-25  Score=214.79  Aligned_cols=332  Identities=14%  Similarity=0.088  Sum_probs=218.0

Q ss_pred             ccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-----cchHH-HHHHHHHHHHHHHHHHhh--
Q 009250          103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRT-FQIDTIPLILGAIISAQA--  174 (539)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~a--  174 (539)
                      .....+.+|.+.+|+|+  |..++|++.+. .+...+ .+++|+++||+     ||||. ++.+.++.++..++.++.  
T Consensus         4 ~~~~~~~~~~~~~~~g~--s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNV--SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             chhHHhHHHHHHHHcCC--CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            34567788999999999  88899998755 455554 99999999998     89887 567788888887788887  


Q ss_pred             -hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcch-------hHHH
Q 009250          175 -HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-------WRTM  246 (539)
Q Consensus       175 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-------wr~~  246 (539)
                       .+++.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+....+.       ||..
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence             46666777888899999999999999999999999999999999999999999999999877665442       9999


Q ss_pred             HHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchh
Q 009250          247 LYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR  325 (539)
Q Consensus       247 f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (539)
                      |++.++..++..+..++ .+|+++.   +.  ++              +++..           +.+..++++++++..+
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~--~~--------------~~~~~-----------~~~~~~~~~~~~~~~~  209 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQED---AS--VP--------------KPLTQ-----------AVLKPIREFFQRKNMI  209 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcc---cc--cc--------------hhHHH-----------HHHHHHHHHHHhcCch
Confidence            99999887776655554 4453210   00  00              00000           0112345555655433


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHH-hcccccccchhhhHHHHhhhcCCchhhHhhHH
Q 009250          326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTN-FAGLRSEKYCALCASYLMDKEGRQKLLIGSYL  404 (539)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~  404 (539)
                      ..........+... .+.....+.+.+.++.+.+.. ..+.+..+.. +.+.++    .++++++.||+|+|+.+..+.+
T Consensus       210 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~-~~g~~~~~~~~~~~~~g----~~~~g~l~~r~g~~~~l~~~~~  283 (356)
T TIGR00901       210 QALLLLLLIVLYKL-GDSAATVLTTLFLLDMGFSKE-EIALVAKINGLLGAILG----GLIGGIIMQPLNILYALLLFGI  283 (356)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHH-HHHHHhHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHH
Confidence            33222222222222 333444566666666666654 4443333222 222222    8999999999999998888887


Q ss_pred             HHHHHHHHHHHHhcCCCCc-cchhhHHHHHHHHHHHHHhc-ccccccccccccccCcccccchhhHHHHHHH
Q 009250          405 GMAISMLLVVGATSLPLDE-DFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHW  474 (539)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  474 (539)
                      +.+++..++.+........ ........+....+..+++. ...+...++..|.+|+++||+..|+.+...+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            7776655544421100000 00011122222222223322 2345667889999999999999999887654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.93  E-value=7.1e-24  Score=207.01  Aligned_cols=373  Identities=11%  Similarity=0.000  Sum_probs=243.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHH--HHHHHHHHHHHHhhh-hhhhhhhcchHHHHHHHHHH-
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLV--VSIFIAGAFVGSISS-GSLADKLGCRRTFQIDTIPL-  164 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~-g~l~dr~Grr~~l~~~~~~~-  164 (539)
                      +..+...++..++..+...|.+|.+.+|.|.  +..++|++  .+...+...+.++++ ++..||+||||.+++.+.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~--~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGA--PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            4556667788888889999999999999998  88999997  466677777888888 45799999999876665432 


Q ss_pred             HHHHHHHH-h--hhc-HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc
Q 009250          165 ILGAIISA-Q--AHS-LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (539)
Q Consensus       165 ~~~~~~~~-~--a~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~  240 (539)
                      ++.....+ +  ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222 2  222 3344555666777778888888889999999998898888888888999999998888888888


Q ss_pred             chhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhc
Q 009250          241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE  320 (539)
Q Consensus       241 ~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (539)
                      + ||..|++.+++.++..+..++++|+++   ++.+                              .++....+.++.++
T Consensus       161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~~l~  206 (390)
T TIGR02718       161 G-QRPAFLLVACVPLASLVCVLWLKDRAV---ASPE------------------------------APLARRASLFRFFR  206 (390)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc------------------------------cchhhHHHHHHHHc
Confidence            8 999999999888776666555544321   0000                              00001123556777


Q ss_pred             cCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHh-cccccccchhhhHHHHhhhcCCchhh
Q 009250          321 EPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNF-AGLRSEKYCALCASYLMDKEGRQKLL  399 (539)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~g~l~dr~g~r~~~  399 (539)
                      ++..+.......+....    ......+.+.++++.+.+.. ..+........ ...    ++.++.|++.||+|+|+.+
T Consensus       207 ~~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~~~G~s~~-~ig~~~~~~~~~~~~----~g~~~~g~l~~r~g~~~~l  277 (390)
T TIGR02718       207 RPLAWSLLALALLSAMT----AVSGFGLSKLYLVDAGWPLE-WIGRLGMAGGAVTVL----LGCGGGAWLVRRAGLWRTF  277 (390)
T ss_pred             CcCHHHHHHHHHHHHHH----HHHHHHHhhHHHHhcCCCHH-HHHHHHhHHHHHHHH----HHHHHHHHHHHHhhHHHHH
Confidence            77665555444333332    22233355666677777665 44444443322 222    2278999999999999988


Q ss_pred             HhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCc-ccccchhhHHHHHHHHHH
Q 009250          400 IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSN-RTRGKIMGFSFSVHWVCN  477 (539)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~  477 (539)
                      ..+.++.++..+..........   .... ..........++..+. .+.......+..++ +.+++.+++.+.+.++|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~  353 (390)
T TIGR02718       278 ILGVGLAGSLALLWFAQAAFWL---APGI-AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE  353 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc---CCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence            8776655333322222111000   0111 1111111111111111 22333444455554 789999999999999999


Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Q 009250          478 FLVGLFFLDLVETFGVAPVYAGFGGVSLLSALF  510 (539)
Q Consensus       478 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  510 (539)
                      .++|.+.|.+.|..|+...|.+.+++.+++.++
T Consensus       354 ~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       354 LIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888877766665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PTZ00207 hypothetical protein; Provisional

Probab=99.93  E-value=1.2e-23  Score=207.86  Aligned_cols=408  Identities=13%  Similarity=0.089  Sum_probs=246.9

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      .++|..+....+...+.+.. ..++...+.+.+++|+  +..+.+++.++. ..+..++++.|++.||+|||+++.++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgl--s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNL--TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCc--CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            45666555555444444333 3445677899999999  888899988774 4556788889999999999999999999


Q ss_pred             HHHHHHHHHHhh------hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHH-HHHhcCC
Q 009250          163 PLILGAIISAQA------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT-SLFLGIP  235 (539)
Q Consensus       163 ~~~~~~~~~~~a------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~  235 (539)
                      ++++++++++++      ++++.+++.|+++|+|.+...+.....+.+|+| ++||++.|+...+.++|..+ +++..++
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999997      689999999999999999999999999999997 67999999999999999975 4555444


Q ss_pred             CCCCcchhHHHHHhhHHHHHHHHHHhcc-c--ccchHHHHhcCChhHHHHHHHHHcCC----------------------
Q 009250          236 AEDDPHWWRTMLYIASLPGFILALGMQF-T--VESPRWLCKGGMLNDAKAVIANLWGE----------------------  290 (539)
Q Consensus       236 l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~--~~~p~~~~~~~~~~~~~~~~~~~~~~----------------------  290 (539)
                      +.  .+ |+..|++.+++.++..++.+. +  |+.|++..++++.++.++..++.++.                      
T Consensus       179 ~~--~~-~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l  255 (591)
T PTZ00207        179 FS--DN-TSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIIL  255 (591)
T ss_pred             HH--Hh-HHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHH
Confidence            43  34 888888888887776655443 3  33444433333223322221110000                      


Q ss_pred             ----------------cch-----------------------------------HHHHHHH-HHH---HHhc--------
Q 009250          291 ----------------SEI-----------------------------------NKAIEEF-QLV---IKKD--------  307 (539)
Q Consensus       291 ----------------~~~-----------------------------------~~~~~~~-~~~---~~~~--------  307 (539)
                                      ...                                   +.+..+. +..   .+.+        
T Consensus       256 ~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (591)
T PTZ00207        256 IVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDV  335 (591)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccc
Confidence                            000                                   0000000 000   0000        


Q ss_pred             C---CCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CC-Chh--HH-HHHHHHHHHhcccccc
Q 009250          308 G---SDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GI-TDG--AL-ASLLVGVTNFAGLRSE  379 (539)
Q Consensus       308 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~--~~-~~~~~~~~~~~~~i~~  379 (539)
                      +   .+...++.+.+++..+|..++..++...    ........+.++.+.. |. .+.  .. ...+.++.+..|    
T Consensus       336 ~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g----~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~G----  407 (591)
T PTZ00207        336 DYIAPQFQETFIEGLKTARLWCLLWSIFCCVG----AHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVG----  407 (591)
T ss_pred             cCCCCCCcchHHHHHhchhHHHHHHHHHHhhC----chheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhh----
Confidence            0   0001134444444555544443333322    3334445566677777 54 222  11 334556666655    


Q ss_pred             cchhhhHHHHhhhcCCc--------hhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccc
Q 009250          380 KYCALCASYLMDKEGRQ--------KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL  451 (539)
Q Consensus       380 ~~~~~~~g~l~dr~g~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (539)
                         ++..|.+.....+|        ...+....++.++.+++.+..        +.....+..++.+++.+.. .++...
T Consensus       408 ---Rl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~--------p~~~L~~~~~lvg~~~G~~-~~~~~~  475 (591)
T PTZ00207        408 ---RLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL--------PKAALPLPYFIAAFANGFM-AATIAL  475 (591)
T ss_pred             ---HHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC--------CccHhHHHHHHHHHHhhHh-HHHHHH
Confidence               88888776222221        122222222444444443311        1122233333333333322 355667


Q ss_pred             ccccccCcccccchhhHHHHHHHHHHHHH-HHHHHHHHHHh----------C---cchhhHHHHHHHHHHHHhhheeeeC
Q 009250          452 VIPELSSNRTRGKIMGFSFSVHWVCNFLV-GLFFLDLVETF----------G---VAPVYAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       452 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~-~~~~~~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      .+.|++. ++-|+-.-+.....-+|..+. -.++|.++|.-          |   +..+|.+.+++++++.++...+.-+
T Consensus       476 i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R  554 (591)
T PTZ00207        476 VTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ  554 (591)
T ss_pred             HHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence            7889999 767777777766666776665 56777787652          2   6778999999999998876655544


Q ss_pred             CC
Q 009250          518 TK  519 (539)
Q Consensus       518 ~~  519 (539)
                      +|
T Consensus       555 ~r  556 (591)
T PTZ00207        555 YR  556 (591)
T ss_pred             hH
Confidence            43

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.92  E-value=5.6e-24  Score=212.29  Aligned_cols=409  Identities=14%  Similarity=0.069  Sum_probs=229.7

Q ss_pred             HHHHHHHHhhhhhcccccchhH-HHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLIL  166 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~  166 (539)
                      ++.+++..+...+....+...+ ..+.+++|+  +..+.+++.+.+........+++|+++|| +|||+++..+.++.++
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~--s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGM--SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            3444455555555554444444 455688999  77777888888777766777899999999 5999999999999999


Q ss_pred             HHHHHHhhh-cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCc--cccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       167 ~~~~~~~a~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      +.+++++++ +.+.++++|+++|+|.|...+...+++.|++|+++  |..++++++++.++|..+||.+++++.+..+ |
T Consensus       101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~  179 (500)
T PRK09584        101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-W  179 (500)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-H
Confidence            999999874 56677788999999999999999999999998653  4568899999999999999999999998888 9


Q ss_pred             HHHHHhhHHHHHHHHHHhcc----cccchHHHHhcCChhHHHHHH-----------HH-HcCCcchHHHHHHH------H
Q 009250          244 RTMLYIASLPGFILALGMQF----TVESPRWLCKGGMLNDAKAVI-----------AN-LWGESEINKAIEEF------Q  301 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~------~  301 (539)
                      |+.|++.++..++..+...+    ++|.++. ..+++.+......           .. .....+........      .
T Consensus       180 ~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (500)
T PRK09584        180 SVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVV  258 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            99999987655544333222    2221100 0000011100000           00 00000000000000      0


Q ss_pred             HHHHhcCCCCcchhhhhhccCchhHHHHH--HHHHHHhhhhhhHHHHHhHHHHHHH-c-----CCC-hhHHHHHHHHHHH
Q 009250          302 LVIKKDGSDLDSQWSELLEEPHSRVAFIG--GALFLLQQFAGINGVLYFSSLTFQD-V-----GIT-DGALASLLVGVTN  372 (539)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~-~~~~~~~~~~~~~  372 (539)
                      .......+.     .+.    ..++.+..  .++.....+..+.........+..+ .     +.. .......+..+..
T Consensus       259 ~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~i  329 (500)
T PRK09584        259 IFGKEAFAM-----KGA----ARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWI  329 (500)
T ss_pred             HHHHHHhhc-----CHH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHH
Confidence            000000000     000    01111111  1111111111111111122211111 1     111 1112222222222


Q ss_pred             hcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccc
Q 009250          373 FAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV  452 (539)
Q Consensus       373 ~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (539)
                      +..   .++.....+++.+|.+..+.+.+++++.+++++.+.............+.++.+...++.........|....+
T Consensus       330 il~---~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~  406 (500)
T PRK09584        330 MIG---SPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAM  406 (500)
T ss_pred             HHH---HHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            222   11113333555555555577888888888888887664432211111122334444444444445557778888


Q ss_pred             cccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH----------HhCcchhhHHHHHHHHHHHHhhhe
Q 009250          453 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE----------TFGVAPVYAGFGGVSLLSALFAYY  513 (539)
Q Consensus       453 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~  513 (539)
                      +.+..|++.||+.+|+......+|..++..+.+....          ..++...|...++++++.+++.+.
T Consensus       407 ~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        407 VAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877776776666666542211          123556676666665555444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.90  E-value=4e-21  Score=186.40  Aligned_cols=398  Identities=14%  Similarity=0.088  Sum_probs=248.8

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhh----hhcchHHHHHH-HHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQID-TIP  163 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~  163 (539)
                      ++.++...+-..+......+.++.+.+++|.  +....+++..+..+...+.+++.|.++|    |+|||+.++.+ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~--~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQELGI--PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            4444445555566677777788888899999  8899999999999999999999999999    59999998874 666


Q ss_pred             HHHHHHHHHhhhcHH-----------------HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCcc--ccchhhhHHHHHH
Q 009250          164 LILGAIISAQAHSLD-----------------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR--GSLGTLCQVGTCL  224 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~  224 (539)
                      ..++.++.++++++.                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l  163 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI  163 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence            677777777877653                 223333444557888888899999999998865  5799999999999


Q ss_pred             HHHHHHHhcCCCC--CCc------------chhHHHHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcC
Q 009250          225 GIITSLFLGIPAE--DDP------------HWWRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWG  289 (539)
Q Consensus       225 G~~~~~~~~~~l~--~~~------------~~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~  289 (539)
                      |.++|+.++++..  +..            .+.|..|++.++..++..+.. ++.+|.|...  .++.++          
T Consensus       164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~----------  231 (477)
T TIGR01301       164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN----------  231 (477)
T ss_pred             HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh----------
Confidence            9999999987641  110            137999999888777766554 4577765210  000000          


Q ss_pred             CcchHHHHHHHHHHHHhc-CCCCcchhhhhhccCc-hhHHHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCC-C------
Q 009250          290 ESEINKAIEEFQLVIKKD-GSDLDSQWSELLEEPH-SRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGI-T------  359 (539)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~------  359 (539)
                              ++.++..+.+ ....+.-++.+.+-|+ .+...+   ..++..+ +...+..|.+.+.. +... +      
T Consensus       232 --------~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~---vqffsW~-a~f~~~~y~T~~vg~~v~~~~~~~~~~  299 (477)
T TIGR01301       232 --------SEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLL---VTCLNWI-AWFPFILFDTDWMGREVYGGSVNQGAK  299 (477)
T ss_pred             --------hhcccccccchhhhHHHHHHHHHHCCHHHHHHHH---HHHHHHH-HHHHHHHhccHHHHHHHcCCCCcchhH
Confidence                    0000000000 0000112222322232 222222   2222222 33334444444433 2211 1      


Q ss_pred             --h----hHHHHHHHHHHHhcccccccchhhhHHHHhhhcCC-chhhHhhHHHHHHHHHHHHHHhcCCCC----------
Q 009250          360 --D----GALASLLVGVTNFAGLRSEKYCALCASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLD----------  422 (539)
Q Consensus       360 --~----~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~----------  422 (539)
                        +    ......+.++...+.       +++..++.+|+|+ |+...++.++.++++....+.......          
T Consensus       300 y~~gvr~G~~~l~~~s~~~~i~-------s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~  372 (477)
T TIGR01301       300 YDDGVRAGAFGLMLNSVVLGIT-------SIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGES  372 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence              0    112223333333333       7788899999985 667688877777777777654321100          


Q ss_pred             --ccch-hhHHHHHHHHHHHHHhcccccccccccccccCc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC--cch
Q 009250          423 --EDFS-HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSN--RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG--VAP  495 (539)
Q Consensus       423 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g--~~~  495 (539)
                        +... .+..++.....+..++. ...+.++++++..++  +..|..+|+.|.+..+...+.....|.+.+..|  ...
T Consensus       373 ~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~  451 (477)
T TIGR01301       373 LPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLP  451 (477)
T ss_pred             cCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCee
Confidence              0000 12222222223223222 245677888888884  456999999999999999999998898777666  556


Q ss_pred             hhHHHHHHHHHHHHhhheeeeCCCC
Q 009250          496 VYAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      .+.+.++..++++++.++.+|+.+.
T Consensus       452 ~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       452 AFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            6777778888888888888887654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.90  E-value=8.9e-21  Score=182.02  Aligned_cols=372  Identities=16%  Similarity=0.150  Sum_probs=247.2

Q ss_pred             HHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhc-chHHHHHHHHHHHHHHHHHH
Q 009250           94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-CRRTFQIDTIPLILGAIISA  172 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~  172 (539)
                      ..+++..+..+...|..+.+-++.|.  |..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++..+...
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~--s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGF--SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33455555667777888999999998  9999999999999999999999999999986 57888888888888887888


Q ss_pred             hhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHh-----cCCCCCCcchhHHHH
Q 009250          173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL-----GIPAEDDPHWWRTML  247 (539)
Q Consensus       173 ~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-----~~~l~~~~~~wr~~f  247 (539)
                      ..++++.+++.-++..+......|...++..+...+  ++.-.|-.-...++|.+++...     .+.. +..+ ..+.+
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~-~~~~-~~~~~  162 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYL-GISG-TSLIF  162 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhh-cccc-ccHHH
Confidence            889999999888888888888889999888888763  4445555666666666666332     2221 1111 33456


Q ss_pred             HhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHH
Q 009250          248 YIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA  327 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (539)
                      ++.+..+++.....+.+|+.|+.   +.                           .++..++....+..+++++|+....
T Consensus       163 ~i~~~~~~ll~~~~l~lp~~~~~---~~---------------------------~~~~~~~~~~~~~~~llk~~~~~~F  212 (400)
T PF03825_consen  163 YIAAILSLLLAGFALFLPKTPPK---RS---------------------------AKESVKKLLGLDALKLLKNPRFLVF  212 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccc---cc---------------------------cCCCcccccchHHHHHhcCccHHHH
Confidence            66666666655556667776510   00                           0000011111233467888876665


Q ss_pred             HHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHH
Q 009250          328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMA  407 (539)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  407 (539)
                      ++...+...    .......+.+.++++.+.......+...++..+    ++++.-...+++.+|+|.++++.++.+..+
T Consensus       213 ll~~~l~~~----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~----aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~  284 (400)
T PF03825_consen  213 LLAAFLIGI----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVV----AEIPFFFFSGRFLKRFGIKWLLLLALVAYA  284 (400)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            554444333    344566677888888884322233333333322    234447889999999999999999999988


Q ss_pred             HHHHHHHHHhcCCCCccchhhHHHHHHH----HHHHHHhcccccccccccccccCcccccchhhHHHHHH-HHHHHHHHH
Q 009250          408 ISMLLVVGATSLPLDEDFSHNLSILGTL----FYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH-WVCNFLVGL  482 (539)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~  482 (539)
                      +=..++.....       +.+.......    +.+..++.. ......++.+..|++.|+++.++++... .+|..+|..
T Consensus       285 vR~~l~a~~~~-------~~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~  356 (400)
T PF03825_consen  285 VRWLLYAYFSD-------PWPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL  356 (400)
T ss_pred             HHHHHHHHhcC-------CcHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence            88877776311       1122222222    123333322 2344578889999999999999988875 589999999


Q ss_pred             HHHHHHHHhCcchh------hHHHHHHHHHHHHhhheeeeC
Q 009250          483 FFLDLVETFGVAPV------YAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       483 ~~~~l~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      +.|+++|+.|.+..      +.+.+++.++..++.+++.|+
T Consensus       357 igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  357 IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999885543      344444444444444444444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.90  E-value=2.9e-23  Score=177.44  Aligned_cols=390  Identities=15%  Similarity=0.048  Sum_probs=243.4

Q ss_pred             CCCCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHH
Q 009250           80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQ  158 (539)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~  158 (539)
                      .+..+|...+..+|+..|-.+++....+....+...|.++  +.++..++.++|.....+.++++|++.|| +|-|..-+
T Consensus        37 S~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni--~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gti  114 (459)
T KOG4686|consen   37 SALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNI--EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTI  114 (459)
T ss_pred             hhhhhHHHHHHHHHHhcccceeecCCchhhhhhhhccccc--ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHH
Confidence            3445678888899999999999999888888888888888  77788999999999999999999999996 78887777


Q ss_pred             HHHHHHHHHHHHHH---hhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCC
Q 009250          159 IDTIPLILGAIISA---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (539)
Q Consensus       159 ~~~~~~~~~~~~~~---~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  235 (539)
                      +-+....+|.+.++   ..+.+|.+.++||+.|+|.-..-++-+.+..-|+..||.+.++|+......+|..+-..+.++
T Consensus       115 i~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~  194 (459)
T KOG4686|consen  115 ILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPF  194 (459)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHH
Confidence            77777777777766   468999999999999999988888999999999999999999999999999998877666666


Q ss_pred             CCCCcchhHHHHHhhHHHHHHHHHHh---cccccchHHHHhcCCh-hHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCC
Q 009250          236 AEDDPHWWRTMLYIASLPGFILALGM---QFTVESPRWLCKGGML-NDAKAVIANLWGESEINKAIEEFQLVIKKDGSDL  311 (539)
Q Consensus       236 l~~~~~~wr~~f~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (539)
                      +.+..+.    ++-...-+.+.+.+.   ..+..+-.-....+-. +.+++.                ...++....+.+
T Consensus       195 ly~~~~~----~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAeri----------------lh~e~g~~Ge~p  254 (459)
T KOG4686|consen  195 LYDTMGR----MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERI----------------LHLEEGFLGEEP  254 (459)
T ss_pred             HHHHHHH----hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----------------HhhhcCcccCCc
Confidence            6543320    000000000000000   0000000000000000 001110                011111111111


Q ss_pred             cchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhh
Q 009250          312 DSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMD  391 (539)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d  391 (539)
                      +-.-..-+ .+.+|...+.+.++...    ..-+....|.++++...-++..++.+.+....+.++.    +++.|.++|
T Consensus       255 kLtdv~~f-~ppfw~~~iicv~yyva----~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~----spvfg~i~D  325 (459)
T KOG4686|consen  255 KLTDVNTF-YPPFWVLVIICVLYYVA----WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVL----SPVFGAISD  325 (459)
T ss_pred             cccccccc-CccHHHHHHHHHHHHHH----HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhh----hhhHHHhHh
Confidence            11111112 23344444444443332    2223334455665544334435566666666666555    899999999


Q ss_pred             hcCCchhhHhhHHHHHH-HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHH
Q 009250          392 KEGRQKLLIGSYLGMAI-SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF  470 (539)
Q Consensus       392 r~g~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~  470 (539)
                      |+|++...+.+..+..+ +-..+.+          +.+.+.....+.+..+..-. ...+..++.+.|++..|++.|..+
T Consensus       326 k~G~n~~wv~~a~~~tl~~H~~l~F----------t~lsPy~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~q  394 (459)
T KOG4686|consen  326 KYGFNLWWVASACILTLLGHSGLFF----------TFLSPYTSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQ  394 (459)
T ss_pred             hhcceehhHHHHHHHHHHHhhhHHh----------hhccHHHHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHH
Confidence            99998776655444433 3333333          12222333333333332211 224566778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-cc---hhhHHHHHHHHHHHHhh
Q 009250          471 SVHWVCNFLVGLFFLDLVETFG-VA---PVYAGFGGVSLLSALFA  511 (539)
Q Consensus       471 ~~~~~g~~~~~~~~~~l~~~~g-~~---~~~~~~~~~~~~~~~~~  511 (539)
                      .+.++|-++.|.+.|.+.|..| +.   ..|...+.+++....+.
T Consensus       395 sIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil  439 (459)
T KOG4686|consen  395 SIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL  439 (459)
T ss_pred             HHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998776 22   22344444444444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.88  E-value=2e-20  Score=171.91  Aligned_cols=401  Identities=15%  Similarity=0.098  Sum_probs=268.4

Q ss_pred             CCCCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHH
Q 009250           80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI  159 (539)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~  159 (539)
                      +-+.+||.++++.++..+.+++.+-.+++........++   +...+-|+..+|++.+....+++-|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            456788999999999999999999889888888888888   55556799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh------hcHH--HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHH
Q 009250          160 DTIPLILGAIISAQA------HSLD--EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF  231 (539)
Q Consensus       160 ~~~~~~~~~~~~~~a------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~  231 (539)
                      +..+..+|+.+-..+      +.++  ....+..+.+.++-........+..-||+++||..+..+-.++..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            999999999988766      2344  66678899998888777777888999999999999999999999999999999


Q ss_pred             hcCCCCCCc----c-hhHH--HHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHH
Q 009250          232 LGIPAEDDP----H-WWRT--MLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV  303 (539)
Q Consensus       232 ~~~~l~~~~----~-~wr~--~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (539)
                      +...+..+.    + .|-.  .|+....+..+.+++. +..++.|+.-                  .         ....
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP------------------p---------s~s~  247 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP------------------P---------SASQ  247 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC------------------C---------chhH
Confidence            998887654    1 2655  3444444433333322 2233322100                  0         0000


Q ss_pred             HHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchh
Q 009250          304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCA  383 (539)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  383 (539)
                      ....+.+-..+.++.++++.+-...+.+.....    .++.....+...+...++.. ..++.+.....+.|+++    +
T Consensus       248 ~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~-~~aG~ig~l~iv~Gmlg----a  318 (480)
T KOG2563|consen  248 AALQDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGYEG-VFAGYIGALMIVAGMLG----A  318 (480)
T ss_pred             hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccCCc-cccchhHHHHHHHHHHH----H
Confidence            001112234566777777765554444333332    44445555544444445443 23444444444444333    9


Q ss_pred             hhHHHHhhhcCCch-hhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          384 LCASYLMDKEGRQK-LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       384 ~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      .+.|.+.||.++-+ .+++......++...+......     ..+.+.+.......+.++.+..|+..-+..|..-|..-
T Consensus       319 ~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~-----~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E  393 (480)
T KOG2563|consen  319 LASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF-----LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE  393 (480)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-----CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC
Confidence            99999999987654 3444444433332222221111     12333444444455556667788888888888777778


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhC----cchhhHHHHHHHHHHHHhhheeeeCCCCCCHH
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDLVETFG----VAPVYAGFGGVSLLSALFAYYFIVETKGRSLE  524 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (539)
                      ++..|+.+..+++-+++-..+.+...+..+    +...-+.....+++..++..++.++.|+++.+
T Consensus       394 ~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e  459 (480)
T KOG2563|consen  394 GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE  459 (480)
T ss_pred             cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence            999999999999999999999998888776    44334444455555555554554444444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.88  E-value=5.6e-20  Score=179.20  Aligned_cols=169  Identities=14%  Similarity=0.149  Sum_probs=131.9

Q ss_pred             HHHHHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-cchHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLIL  166 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~  166 (539)
                      +..+++..+...+....+...+|. +.+++|+  ++.+.+.+.+.+.....++.+++|+++||+ |||++++++.++.++
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgl--s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKY--DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            444444444555555445555554 4567888  888889999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhh-cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCC--ccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       167 ~~~~~~~a~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      +.+++++.+ +...+.++..+.++|.|...+...++++|.+|++  +|..++++.+.+.++|..++|.+.+++.+..+ |
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w  167 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-W  167 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-h
Confidence            988777643 2233444445555667777787888999999875  69999999999999999999999999988888 9


Q ss_pred             HHHHHhhHHHHHHHHHH
Q 009250          244 RTMLYIASLPGFILALG  260 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~  260 (539)
                      |+.|.+.++..++..+.
T Consensus       168 ~~~F~iaaigm~l~li~  184 (493)
T PRK15462        168 AMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999877654444333

>PRK09669 putative symporter YagG; Provisional

Probab=99.87  E-value=1.2e-20  Score=187.35  Aligned_cols=334  Identities=15%  Similarity=0.080  Sum_probs=207.9

Q ss_pred             hHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh----hcch-HHHHHHHHHHHHHHHHHHhhhc------H
Q 009250          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCR-RTFQIDTIPLILGAIISAQAHS------L  177 (539)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~  177 (539)
                      ....+.+++|+  +..++|.+.++..+..++..|+.|.++||    +||| +.++.+.+..+++.++....++      +
T Consensus        32 l~~~~t~~~gl--s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         32 LAYFYTDVFGL--SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            45677888999  89999999999999999999999999998    7874 5566777777777766555543      4


Q ss_pred             HHHHHHHHHhhhchhhhhhhHHHHHHhcC-CCCccccchhhhHHHHHHHHHHHHHhcC----CCCC---CcchhHHHHHh
Q 009250          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGI----PAED---DPHWWRTMLYI  249 (539)
Q Consensus       178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~----~l~~---~~~~wr~~f~~  249 (539)
                      ..+++..++.+++.......-.++..|+. +++||.+..++...+..+|..+++.+..    .+..   ..+ |+..+.+
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i  188 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHH
Confidence            55666666777777777777788999988 4578998888887777777776654332    2221   234 9988888


Q ss_pred             hHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHH
Q 009250          250 ASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF  328 (539)
Q Consensus       250 ~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (539)
                      .++++++..+..++ .+|.++.                                 .++++.+.....+.+++++.++...
T Consensus       189 ~~ii~~v~~~~~~~~~~e~~~~---------------------------------~~~~~~~~~~~~~~~~~n~~~~~l~  235 (444)
T PRK09669        189 MGLLGVVLFFCCFFMTKERYTP---------------------------------EVDNSSSVWKDLKLLLGNSQWRIMF  235 (444)
T ss_pred             HHHHHHHHHHHHhCCeEEecCC---------------------------------CCcCCCCHHHHHHHHhCCchHHHHH
Confidence            88877766554443 4443110                                 0001111234566777888776655


Q ss_pred             HHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHH
Q 009250          329 IGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAI  408 (539)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  408 (539)
                      ...++......    .......++.+..... ............+.+.    ++.++.+++.||+|+|+.+..+.++..+
T Consensus       236 ~~~~~~~~~~~----~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~i----i~~~~~~~l~~r~gk~~~~~~~~~~~~~  306 (444)
T PRK09669        236 IFNVVLLTAVV----TRGGATLYYVNYVLLR-PDLATLFLVTGMIAGL----FGALLSERLLGKFDRVRAFKWTIVAFVI  306 (444)
T ss_pred             HHHHHHHHHHH----HHhhhhheeeeeecCC-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            54433332221    1112222222222112 2122222223333332    2278899999999999988877765554


Q ss_pred             HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC-------cccccchhhHHHHHHHHHHHHHH
Q 009250          409 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVG  481 (539)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~  481 (539)
                      ..+.+.+..      ..+.+...+...+...+.+ ...+..+++++|..+       .+..|...|+.+.+..+|.++++
T Consensus       307 ~~~~~~~~~------~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~  379 (444)
T PRK09669        307 LSALIFFIP------PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGG  379 (444)
T ss_pred             HHHHHHHhC------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHH
Confidence            333332211      0111222222222222222 234666777777764       33456678899999999999999


Q ss_pred             HHHHHHHHHhCcc
Q 009250          482 LFFLDLVETFGVA  494 (539)
Q Consensus       482 ~~~~~l~~~~g~~  494 (539)
                      .+.|.+.+..||.
T Consensus       380 ~i~g~ll~~~Gy~  392 (444)
T PRK09669        380 AVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999988873

>TIGR00788 fbt folate/biopterin transporter

Probab=99.87  E-value=5.1e-21  Score=189.46  Aligned_cols=384  Identities=13%  Similarity=0.002  Sum_probs=233.5

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhc-----chHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQIDTIP  163 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~  163 (539)
                      +.++...++..++.........+.+.+++|+  +..+++...+...+...+-.+ +|+++||++     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~--s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGL--DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            4455556677777744444556777778999  889999999999999998666 999999998     77877888777


Q ss_pred             HH-HHHHHHHhhhcHHHHHH-HHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhh---HHHHHHHHHHHHHhcCCCCC
Q 009250          164 LI-LGAIISAQAHSLDEMLW-GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC---QVGTCLGIITSLFLGIPAED  238 (539)
Q Consensus       164 ~~-~~~~~~~~a~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~~~~~~~~l~~  238 (539)
                      .+ ++....+..++.....+ ..++.+++.+...++..++..|..+ +++....+..   ....++|.++++.+++.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            63 44344444456544444 8999999999999999999999998 5554443333   33445899999999999988


Q ss_pred             CcchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhh
Q 009250          239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL  318 (539)
Q Consensus       239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (539)
                      ..+ ||..|++.+++.++..+...+++|++.....+.+.++...      ..... .   ......+    +.....+..
T Consensus       184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~------~~~~~-~---~~~~~~~----~~~~~l~~~  248 (468)
T TIGR00788       184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMN------MALLT-L---GVLANVK----VQILGLRGA  248 (468)
T ss_pred             hcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhh------hhhhh-h---hHHHHHH----HHHHHHHHH
Confidence            878 9999999988888776666677775310000000000000      00000 0   0000000    001122333


Q ss_pred             hccCchhHHHHHHHH-HHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCch
Q 009250          319 LEEPHSRVAFIGGAL-FLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQK  397 (539)
Q Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~  397 (539)
                      ++++..+..++..++ +... . .. ....+. ...+..+.+.. ..+.......+..+++    ..+.+++.+|++.|+
T Consensus       249 l~~~~i~~~l~fifl~~~~~-~-~~-~~~~f~-~~~~~lG~s~~-~~G~~~~~~~v~~i~g----~~~~~~~~~~~~~r~  319 (468)
T TIGR00788       249 IQLLEIAKPLIFIFLSYANL-P-GA-SGSVFC-ATTQCLPGGPS-FSGMSKVVGNLGSLCG----VGGYDRFLKTFPYRL  319 (468)
T ss_pred             HhcHHHHHHHHHHHHHHhhc-C-CC-CceeEE-EEcccCCCCcc-hhhhHHHHHHHHHHHH----HHHHHHHHhhCCHHH
Confidence            455544443332222 1111 1 11 101111 11123454443 4555544444444333    888888889999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHhcCCC-Ccc-chhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHH
Q 009250          398 LLIGSYLGMAISMLLVVGATSLPL-DED-FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV  475 (539)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  475 (539)
                      ++.++.++.+++.+.......... ... ...+.......+...+.+....+. ..++.+..|++.+|+.+|+.+++.++
T Consensus       320 ~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~l  398 (468)
T TIGR00788       320 LFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHL  398 (468)
T ss_pred             HHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHH
Confidence            988888877776654322110000 000 011122222333333444444443 57788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-----cchhhHHHH
Q 009250          476 CNFLVGLFFLDLVETFG-----VAPVYAGFG  501 (539)
Q Consensus       476 g~~~~~~~~~~l~~~~g-----~~~~~~~~~  501 (539)
                      |..+++.+.+.+.+..|     +...+.+..
T Consensus       399 g~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~  429 (468)
T TIGR00788       399 GSSVSGFLGVLLMETIGITCDNSNNLWLLIL  429 (468)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccccchHHHHH
Confidence            99999999999999888     555444333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.86  E-value=3.7e-20  Score=184.80  Aligned_cols=356  Identities=11%  Similarity=0.029  Sum_probs=211.7

Q ss_pred             HHHhhhhhcccccchhH-HHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhh----hhcc-hHHHHHHHHHHHHH
Q 009250           94 MSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGC-RRTFQIDTIPLILG  167 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~  167 (539)
                      ++.+...+..+.+.+.+ ..+.+.+|+  +..++|.+..+..+.-++..|+.|.++|    |+|| |+.++++.+..+++
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gl--s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGL--SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV   90 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence            33333444444444444 456667798  9999999999999999999999999999    6698 66667788887877


Q ss_pred             HHHHHhhhc------HHHHHHHHHHhhhchhhhhhhHHHHHHhcC-CCCccccchhhhHHHHHHHHHHHHHhcCC----C
Q 009250          168 AIISAQAHS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIP----A  236 (539)
Q Consensus       168 ~~~~~~a~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l  236 (539)
                      .+++-..++      +..+++.-++.+++.....+...++..|.. +++||.+..++-..+.++|..+.+.+...    +
T Consensus        91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~  170 (473)
T PRK10429         91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV  170 (473)
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666644332      334555667778888888888889999998 58899998888666666665444333221    1


Q ss_pred             ---CCCcchhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCc
Q 009250          237 ---EDDPHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLD  312 (539)
Q Consensus       237 ---~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (539)
                         .+..+ |+....+.+++.++..+..++ .+|.++.    ..                        .+..++++.+.+
T Consensus       171 g~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~------------------------~~~~~~~~~~~~  221 (473)
T PRK10429        171 GGGDRGFG-FQMFTLVLIAFFIVSTIITLRNVHEVYSS----DN------------------------QVSAEGSHLTLK  221 (473)
T ss_pred             CCCchhhh-HHHHHHHHHHHHHHHHHHHHcCceecCCc----cc------------------------cccccccCCCHH
Confidence               11223 888887777776665544433 5554210    00                        000000111122


Q ss_pred             chhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh
Q 009250          313 SQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK  392 (539)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr  392 (539)
                      +.++.+++++.++..+...++...    .......+.+++.+....... ..+....+..+..++    +.++.+++.||
T Consensus       222 ~~~~~~~~n~~~~~ll~~~~~~~~----~~~~~~~~~~y~~~y~~~~~~-~~~~~~~~~~i~~ii----~~~~~~~l~~r  292 (473)
T PRK10429        222 DIVALIYKNDQLSCLLGMALAYNI----ASNIINGFAIYYFTYVIGDAD-LFPYYLSYAGAANLV----TLILFPRLVKS  292 (473)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHH----HHHHHhhheeeEEEEECCCHH-HHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            334445566554444333333222    222333333444443333222 233333333333322    28899999999


Q ss_pred             cCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC-------cccccch
Q 009250          393 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS-------NRTRGKI  465 (539)
Q Consensus       393 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~  465 (539)
                      +|+|+.+..+..+..++.+.+.......   ....+..++...+...+.+. ..+...++.+|..+       .+..|..
T Consensus       293 ~gkk~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~  368 (473)
T PRK10429        293 LSRRILWAGASIFPVLSCGVLLLMGLAA---PHNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIA  368 (473)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhccC---chhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHH
Confidence            9999998877776665554443321111   11122222222222222222 23445667777754       3445668


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 009250          466 MGFSFSVHWVCNFLVGLFFLDLVETFGV  493 (539)
Q Consensus       466 ~g~~~~~~~~g~~~~~~~~~~l~~~~g~  493 (539)
                      +|....+..++..+++.+.|.+.+..||
T Consensus       369 ~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        369 YSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999988876

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.85  E-value=2.7e-19  Score=176.66  Aligned_cols=337  Identities=17%  Similarity=0.158  Sum_probs=233.1

Q ss_pred             hhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhh----hhcchHHH-HHHHHHHHHHHHHHHhh-h------
Q 009250          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTF-QIDTIPLILGAIISAQA-H------  175 (539)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~a-~------  175 (539)
                      ...+.+.+.+|+  ++...|.+..+..+-.++..|+.|.++|    |+||||.. ++|.+..+++.+++... +      
T Consensus        23 ~~~~f~~~~~gl--~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   23 YLLYFYTDVLGL--SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            345677788899  8999999999999999999999999999    89976555 46778888888777765 4      


Q ss_pred             -cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCC-CCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc------hhHHHH
Q 009250          176 -SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH------WWRTML  247 (539)
Q Consensus       176 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~------~wr~~f  247 (539)
                       ....+.+.-++..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+..+      +|++..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~  180 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA  180 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence             23345677777799999899999999999998 5789999999988888988766666655543222      499999


Q ss_pred             HhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhH
Q 009250          248 YIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV  326 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (539)
                      ++.+++.++..++..+ .+|+++                               +.+.++++.+.++.++.+++++.++.
T Consensus       181 ~v~~iv~~v~~~i~~~~~ke~~~-------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~  229 (428)
T PF13347_consen  181 LVLAIVGLVFFLITFFFVKERSV-------------------------------EVTEQEKKISLRDSLRSLFRNRPFRI  229 (428)
T ss_pred             HHHHHHHHHHhhhhhheeeeccc-------------------------------cccccccccccccchhhhcccchHHH
Confidence            9988888877766555 455110                               01112223334556778888888777


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHH
Q 009250          327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGM  406 (539)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  406 (539)
                      ......+.............++..+.+++    +. .......+..+.+.++    .++.++++||+|+|+.+..+.++.
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~----~~-~~~~~~~~~~~~~~v~----~~~~~~l~~r~gk~~~~~~~~~~~  300 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYVLGN----EG-LISIFMLIFFVASIVG----SPLWGRLSKRFGKKKVYIIGLLLA  300 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhcC----ch-hhHHHHHHHHHHHHHH----HHHHHHHHHHccceeehhhhHHHH
Confidence            66665555443333333333333333322    21 2233333333333222    899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccC-------cccccchhhHHHHHHHHHHH
Q 009250          407 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNF  478 (539)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~  478 (539)
                      +++.+++.+...        .............+.+. ......+++.+|..+       ++..|...|+.+....++..
T Consensus       301 ~~~~~~~~~~~~--------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~  372 (428)
T PF13347_consen  301 ALGFLLLFFLGP--------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG  372 (428)
T ss_pred             HHHHHHHHHHHh--------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH
Confidence            988888776431        12222222222333322 234666778888776       34568899999999999999


Q ss_pred             HHHHHHHHHHHHhCcc
Q 009250          479 LVGLFFLDLVETFGVA  494 (539)
Q Consensus       479 ~~~~~~~~l~~~~g~~  494 (539)
                      +++.+.+.+.+..|+.
T Consensus       373 la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  373 LAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHHHhCcC
Confidence            9999999998887754

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.84  E-value=9.8e-20  Score=170.97  Aligned_cols=383  Identities=15%  Similarity=0.078  Sum_probs=233.7

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHH-HhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHH--
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI--  165 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--  165 (539)
                      .+......+...+..++..|..+...+ +-|+  +..++|.+.++..+...+.+++.|.++||+|.||-++..+.+..  
T Consensus         9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GL--s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGL--SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCC--CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            444455555666667777788876665 4899  99999999999999999999999999999997776554433322  


Q ss_pred             HHHHHH-Hhh----hcH-HHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          166 LGAIIS-AQA----HSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       166 ~~~~~~-~~a----~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      .+.... .+.    .|. ...+++-+..|+...+..|+.-+++.++.  ++.+.=.|-.-++.++|.+++..++|.+.+.
T Consensus        87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i  164 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI  164 (412)
T ss_dssp             CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence            222221 222    232 23334445556655566666666665554  3345556667788889999998888888754


Q ss_pred             cchhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCc---chh
Q 009250          240 PHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLD---SQW  315 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  315 (539)
                      .  -+..||+....+++..++..+ .|+.++.....                             +....++++   ...
T Consensus       165 ~--p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~  213 (412)
T PF01306_consen  165 N--PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-----------------------------DALGAKKDKVSLKDV  213 (412)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-----------------------------TTSSS------HHHH
T ss_pred             C--ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-----------------------------cccccCCCCCcHHHH
Confidence            3  467788766665555544433 33332100000                             000001111   223


Q ss_pred             hhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCC
Q 009250          316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGR  395 (539)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~  395 (539)
                      .++++++++|...+.......    .+.......+.++.....+.. ....+++...-.+.+.+.+.-.+..++.+|+|.
T Consensus       214 ~~l~k~~~fw~~~l~v~g~~~----~Y~vfdqqf~~y~~~~f~~~~-~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~  288 (412)
T PF01306_consen  214 LSLFKMRNFWFFVLFVIGVAA----IYDVFDQQFPIYFASFFQSAG-QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGA  288 (412)
T ss_dssp             HHHTTSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHhcchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccc-cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            466677766664443332222    344444445555555443332 333344444444444455558899999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHH-HHHHH
Q 009250          396 QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHW  474 (539)
Q Consensus       396 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~  474 (539)
                      |+.++++..++.+=....++..        +.+.....-.+-..-+.... ....-++++.+|++..++...+. +...+
T Consensus       289 k~~Lllag~i~~iRi~~~~~~~--------~~~~i~~~klLH~~e~~l~l-va~fkYI~~~fd~rlsAt~y~v~~~~~~~  359 (412)
T PF01306_consen  289 KNLLLLAGVIMAIRIIGSGFAT--------NPWVISLIKLLHALEFPLLL-VAAFKYITAHFDKRLSATLYLVGFQFAKQ  359 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT----------SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-GGGHHHHHHHHHTTTHH
T ss_pred             HhHHHHHHHHHHHHHHHHhhhc--------chHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHH
Confidence            9999999998888887777632        22333333333333332222 23456788999999888888885 57778


Q ss_pred             HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCC
Q 009250          475 VCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       475 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      ++.++.+.+.|.++|+.|++.+|++.+.+.+...++..+.+++.++
T Consensus       360 ~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  360 IGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            9999999999999999999999999998888887777766655444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=99.84  E-value=1.2e-18  Score=173.36  Aligned_cols=348  Identities=13%  Similarity=0.090  Sum_probs=199.3

Q ss_pred             HHhhhhhcccccchh-HHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh----cchHHH-HHHHHHHHHHH
Q 009250           95 SNFLFGYHIGVMNGP-IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL----GCRRTF-QIDTIPLILGA  168 (539)
Q Consensus        95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~  168 (539)
                      +.+..........+. .+.+.+.+|+  +..++|.+.+...+..++..++.|+++||.    ||||.+ .++.+...+..
T Consensus        16 g~~~~~~~~~~~~~~l~~y~~~~~gl--~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~   93 (448)
T PRK09848         16 GDVANNFAFAMGALFLLSYYTDVAGV--GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS   93 (448)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence            333333333333333 3567777899  899999999999999999999999999996    777654 55655555444


Q ss_pred             HHH-Hh----hhc--HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCC-CccccchhhhHHH-----HHHHHHHHHHhcCC
Q 009250          169 IIS-AQ----AHS--LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVG-----TCLGIITSLFLGIP  235 (539)
Q Consensus       169 ~~~-~~----a~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~~~~~~~~  235 (539)
                      ++. ..    +++  ...+++.-++.+++.+...+...++..+...+ ++|.+..++-..+     ..+|..++|.++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848         94 VLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            443 22    111  23344456677888888887777777776654 6788776655433     33556666666654


Q ss_pred             CCCCcc-hhHHHHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcc
Q 009250          236 AEDDPH-WWRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDS  313 (539)
Q Consensus       236 l~~~~~-~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (539)
                      ...... .|.....+.++++++..++. ...+|+++                                  .+.++...+.
T Consensus       174 ~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~----------------------------------~~~~~~~~~~  219 (448)
T PRK09848        174 SPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVV----------------------------------RIVAQPSLKI  219 (448)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccC----------------------------------CCccCCCHHH
Confidence            322111 12222223333333332222 23444321                                  0001111223


Q ss_pred             hhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc
Q 009250          314 QWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE  393 (539)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~  393 (539)
                      .++.+++++.+....+...+...    .........+++.++....+............+..    +++.++.+++.||+
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~r~  291 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLI----STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGT----VASAPLVPGMVARI  291 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHH----HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence            45667888776655444444333    22333334555555433333322222222112222    22388999999999


Q ss_pred             CCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCc-------ccccchh
Q 009250          394 GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSN-------RTRGKIM  466 (539)
Q Consensus       394 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~  466 (539)
                      ++|+.+.++.++..++.+.+.+..      ..+.+.......+...+.+. ..+...+...|..|.       +..|...
T Consensus       292 g~~~~~~~g~~~~~i~~~~~~~~~------~~~~~~~~~~~~l~g~G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~  364 (448)
T PRK09848        292 GKKNTFLIGALLGTCGYLLFFWVS------VWSLPVALVALAIASIGQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTY  364 (448)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcC------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHH
Confidence            999999998888777766654421      01122222222222222222 234455666666654       3468999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 009250          467 GFSFSVHWVCNFLVGLFFLDLVETFGV  493 (539)
Q Consensus       467 g~~~~~~~~g~~~~~~~~~~l~~~~g~  493 (539)
                      |+.+....+|..+++.+.+.+.+..||
T Consensus       365 ~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        365 SLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999888776

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.82  E-value=2.2e-19  Score=170.47  Aligned_cols=398  Identities=15%  Similarity=0.184  Sum_probs=240.3

Q ss_pred             CchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcc-hHHHHHHH
Q 009250           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDT  161 (539)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~  161 (539)
                      +..|+.+.+..+.+++.....+++.+..-.+.++++.+.+....||+.++..++.+++++.+|++..|.+. |+.++.|.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            34566788888999999999999999887888887776688888999999999999999999999999997 88899999


Q ss_pred             HHHHHHHHHH-Hhh---h-cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          162 IPLILGAIIS-AQA---H-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       162 ~~~~~~~~~~-~~a---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                      ++..+|+++. ++.   + ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.++..+
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            9999999998 332   3 67889999999999987 6778889999998889999999999888888888887776544


Q ss_pred             CCCc------------chhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHH
Q 009250          237 EDDP------------HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV  303 (539)
Q Consensus       237 ~~~~------------~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (539)
                      ....            +-+-.+-|+.+++.++.++...+ +.|.++-...+.                    ..++    
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~--------------------~~~~----  244 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKK--------------------KRSV----  244 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccc--------------------cccc----
Confidence            3211            11445667777777777665544 555442100000                    0000    


Q ss_pred             HHhcCCCCcchhhhhhc-cCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChh---HHHHHHHHHHHhcccccc
Q 009250          304 IKKDGSDLDSQWSELLE-EPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG---ALASLLVGVTNFAGLRSE  379 (539)
Q Consensus       304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~  379 (539)
                        ++.   +....+... +..+...+++....+...+.....-....+......+....   ...+...++..+....- 
T Consensus       245 --~~~---~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~-  318 (488)
T KOG2325|consen  245 --EEE---KSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVIL-  318 (488)
T ss_pred             --hhh---ccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHH-
Confidence              000   000001111 11122222333333333332222223333333333343322   23333333333333111 


Q ss_pred             cchhhhHHHHh-hhcCCchhhHhhHHHHHHHHHHHHHHhcCCCC-----c-----------cc------hhhHHHHHHHH
Q 009250          380 KYCALCASYLM-DKEGRQKLLIGSYLGMAISMLLVVGATSLPLD-----E-----------DF------SHNLSILGTLF  436 (539)
Q Consensus       380 ~~~~~~~g~l~-dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----------~~------~~~~~~~~~~~  436 (539)
                         .+...... .++.+|..+..+++.......+......+...     .           ++      .+.........
T Consensus       319 ---~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i  395 (488)
T KOG2325|consen  319 ---LLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFI  395 (488)
T ss_pred             ---HHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehh
Confidence               22222222 23344555555544333333322211110000     0           00      00111111111


Q ss_pred             HHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          437 YIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       437 ~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      +.++.+.-. .....++-+|...+..+++..|+.......+..++|.+...+....|+++...+.+...++...+...+
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~  474 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF  474 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            112222111 123445667888999999999999999999999999999999999999887776666666555544333

>PRK11462 putative transporter; Provisional

Probab=99.82  E-value=4.7e-18  Score=168.32  Aligned_cols=333  Identities=13%  Similarity=0.047  Sum_probs=200.3

Q ss_pred             hHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh----hcchH-HHHHHHHHHHHHHHHHHhhhc------H
Q 009250          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRR-TFQIDTIPLILGAIISAQAHS------L  177 (539)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~a~~------~  177 (539)
                      ....+.+.+|+  ++..+|.+..+.-+--++..|+.|.++||    +|||| .++++.+..+++.+++-..++      .
T Consensus        32 l~~fyt~~~Gl--~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         32 MMFFYTDIFGI--PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHHhhCC--CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            34456677899  99999999999999999999999999995    78865 455577778877776654443      3


Q ss_pred             HHHHHHHHHhhhchhhhhhhHHHHHHhcCC-CCccccchhhhHHHHHHHHHHHHHhcCCCCCC------cchhHHHHHhh
Q 009250          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD------PHWWRTMLYIA  250 (539)
Q Consensus       178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~------~~~wr~~f~~~  250 (539)
                      ..+++.-++..++.......-.++..|..+ ++||.+..++...+..+|..+++.+...+...      ..+|+....+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            445566667788888888888899999987 78899999999999888877775554322211      11388877777


Q ss_pred             HHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHH
Q 009250          251 SLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI  329 (539)
Q Consensus       251 ~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (539)
                      +++.++..++.++ .+|.++.                                  ++++.+.+...+..++++.++....
T Consensus       190 ~ii~~i~~~i~~~~~kE~~~~----------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~  235 (460)
T PRK11462        190 SVVAFMMLAFCFFTTKERVEA----------------------------------PPTTTSMREDLRDIWQNDQWRIVGL  235 (460)
T ss_pred             HHHHHHHHHHHHhcceeccCC----------------------------------CccCCCHHHHHHHHhCChHHHHHHH
Confidence            7776666544443 3442210                                  0001112234556667766655544


Q ss_pred             HHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHH
Q 009250          330 GGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAIS  409 (539)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  409 (539)
                      ...+.............++..+++    .... ..........+.++++    .++++++.||+++|+.+..+..+..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~y~~~y~~----g~~~-~~~~~l~~~~i~~iig----~~l~~~l~~r~gkk~~~~~~~~~~~~~  306 (460)
T PRK11462        236 LTIFNILAVCVRGGAMMYYVTWIL----GTPE-VFVAFLTTYCVGNLIG----SALAKPLTDWKCKVTIFWWTNALLAVI  306 (460)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhhhc----CChH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            333333332222233333333332    2222 2222223333333222    889999999999998876554443333


Q ss_pred             HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC-------cccccchhhHHHHHHHHHHHHHHH
Q 009250          410 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      .+++.+..      ........+..++.+.+. ....+..+++.+|..+       .+..|..++.......+|.++++.
T Consensus       307 ~~~~~~~~------~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~  379 (460)
T PRK11462        307 SLAMFFVP------MQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGA  379 (460)
T ss_pred             HHHHHHhc------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            33322211      011111222222222221 2223444555666554       333355567777889999999999


Q ss_pred             HHHHHHHHhCc
Q 009250          483 FFLDLVETFGV  493 (539)
Q Consensus       483 ~~~~l~~~~g~  493 (539)
                      +.|.+.+..||
T Consensus       380 i~g~iL~~~Gy  390 (460)
T PRK11462        380 LIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHcCC
Confidence            99999887776

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.81  E-value=2.4e-17  Score=161.33  Aligned_cols=362  Identities=16%  Similarity=0.120  Sum_probs=223.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHH-HHHHHHHHHHHHHhh-h-cHHHHHHHHHHhhhchhhhhhhHHH
Q 009250          124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIISAQA-H-SLDEMLWGRFLVGLGIGVNTVLVPI  200 (539)
Q Consensus       124 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~a-~-~~~~l~~~r~l~G~~~~~~~~~~~~  200 (539)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445778889999999999999999999987766555 555555666666664 3 4544555566666788888889999


Q ss_pred             HHHhcCCCCcc--------------------------ccchhhhHHHHHHHHHHHHHhcCCCCCCcc-------hhHHHH
Q 009250          201 YISEVAPTKYR--------------------------GSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WWRTML  247 (539)
Q Consensus       201 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-------~wr~~f  247 (539)
                      ++.|..+++++                          ++..+.-.....+|.++...+...+....+       .-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          898888888888888777665543321111       158888


Q ss_pred             HhhHHHHHHHHH-HhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhH
Q 009250          248 YIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV  326 (539)
Q Consensus       248 ~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (539)
                      .+.++.-++..+ ..+++||.|+.   +.. +....                ....    .-++....++++.+.+....
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~---~~~-~~~~~----------------~~~~----g~~~l~~t~k~~~~~~~~~~  285 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGP---RPL-PSGSS----------------YLRF----GFKRLWRTFKEIRKLRQLFL  285 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCC---CCC-Ccchh----------------HHHH----HHHHHHHHHHHHHhChHHHH
Confidence            888887666554 44556666531   000 00000                0000    00001123334433333333


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCc--hhhHhhH
Q 009250          327 AFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQ--KLLIGSY  403 (539)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r--~~~~~~~  403 (539)
                      .++..    +....+.+.+..+...+.. ..+++.. .......+.++.+.+|    +++.|++.||+|.|  +++..+.
T Consensus       286 fLia~----~l~~dg~~ti~~~~~i~a~~~lg~s~~-~l~~~~l~~~i~a~~G----a~~~g~l~~r~g~k~~~~l~~~l  356 (477)
T PF11700_consen  286 FLIAY----FLYSDGVNTIISFAGIYATEVLGMSTT-QLIVFGLVVQIVAIIG----ALLFGWLQDRFGPKTKRTLLISL  356 (477)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHhcCcCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCCchhHHHHHHH
Confidence            33322    2222344455555555554 6677655 3334444444444333    99999999999998  6666655


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF  483 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  483 (539)
                      +...+..+...+.. .+..-...+.+......+..+.+..+.++..-++.+|+.|+++.+..+|++.......+.+||.+
T Consensus       357 ~~~~~i~~~g~~G~-~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll  435 (477)
T PF11700_consen  357 ILWIIIPLYGLFGF-WPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL  435 (477)
T ss_pred             HHHHHHHHHHHHHh-hhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            55532222211100 00000012222233333333333344467777899999999999999999999999999999999


Q ss_pred             HHHHHHHhC-cchhhHHHHHHHHHHHHhhheeeeCCCC
Q 009250          484 FLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       484 ~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      +|.+.+..| .+..+....++.+++.++. ..++..|+
T Consensus       436 ~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g  472 (477)
T PF11700_consen  436 FGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG  472 (477)
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence            999999988 6777777777777766655 44444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.80  E-value=2.9e-18  Score=160.32  Aligned_cols=277  Identities=16%  Similarity=0.053  Sum_probs=178.0

Q ss_pred             HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc-----------
Q 009250          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-----------  240 (539)
Q Consensus       172 ~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~-----------  240 (539)
                      +...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|..++|.+++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            356789999999999999999999999999999999999999999999999999999999998766321           


Q ss_pred             ----chhHHHHHhhHHHHHHHHHHhccc--ccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcch
Q 009250          241 ----HWWRTMLYIASLPGFILALGMQFT--VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ  314 (539)
Q Consensus       241 ----~~wr~~f~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (539)
                          .+|+++|++.+.+.++..+.+.+.  ||..+      +.++                   +     ..+++  ...
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~-------------------~-----~~~~~--~~~  132 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA-------------------R-----VSSGD--TTQ  132 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-------------------c-----ccccc--ccc
Confidence                239999997776655555444343  43210      0000                   0     00000  001


Q ss_pred             hhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc---CCChhHHHHHHHHHHHhcccccccchhhhHHHHhh
Q 009250          315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV---GITDGALASLLVGVTNFAGLRSEKYCALCASYLMD  391 (539)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d  391 (539)
                      .++.++++..+.    ..+..+...+.-.....+.+.|+.+.   +.+. ...+...+.......+|    +++.+++.|
T Consensus       133 ~~~~~~~~~~~l----~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~-~~a~~~~s~~~~~~~iG----r~~~~~l~~  203 (310)
T TIGR01272       133 KTSAFQFTHLVL----GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPE-DQAAHFTAYTWGGAMVG----RFIGSAVMP  203 (310)
T ss_pred             hhhHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            122333333332    22333333333445555667777543   4443 34444455554444444    999999999


Q ss_pred             hcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHH
Q 009250          392 KEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFS  471 (539)
Q Consensus       392 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~  471 (539)
                      |+++|+.+.++..+..++.+++...         +.....+...+.+ .+.....|...+...+..|++ .+++.++. .
T Consensus       204 r~g~~~~l~~~~~l~~~~~~l~~~~---------~~~~~~~~~~l~g-~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~  271 (310)
T TIGR01272       204 MISQGRYLAFNAFLAVLLSIGAALT---------HGYVAMWFVLALG-LFNSIMFPTIFSLALNALGRH-TSQGSGIL-C  271 (310)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-H
Confidence            9999998887777666655443331         1111222222222 222334566666677777764 56777775 6


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Q 009250          472 VHWVCNFLVGLFFLDLVETFGVAPVYAGFG  501 (539)
Q Consensus       472 ~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  501 (539)
                      +..+|+++.|.+.|.+.|..|.+.++++..
T Consensus       272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       272 LAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            788999999999999999999887776433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.1e-17  Score=158.78  Aligned_cols=334  Identities=17%  Similarity=0.145  Sum_probs=222.9

Q ss_pred             HHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh----hcc-hHHHHHHHHHHHHHHHHHHhhhc------HHH
Q 009250          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGC-RRTFQIDTIPLILGAIISAQAHS------LDE  179 (539)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~a~~------~~~  179 (539)
                      -.+.+.+|+  ++..+|.+..+--+--++..|+.|.+.||    +|| |+.++++.+..++.+.++-.+++      ...
T Consensus        37 ~fYTdv~Gi--s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y  114 (467)
T COG2211          37 FFYTDVFGL--SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY  114 (467)
T ss_pred             HHHhcccCC--cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence            456677888  89988999999999999999999999995    787 45666688889999998887774      444


Q ss_pred             HHHHHHHhhhchhhhhhhHHHHHHhcCC-CCccccchhhhHHHHHHHHHHHHHhcC----CCCCC--cchhHHHHHhhHH
Q 009250          180 MLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGI----PAEDD--PHWWRTMLYIASL  252 (539)
Q Consensus       180 l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~----~l~~~--~~~wr~~f~~~~~  252 (539)
                      .++.-.+.+++.......-.++..|..+ ++||.+..++-+.+..+|..+...+..    .+.+.  ..+|+...++.++
T Consensus       115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~v  194 (467)
T COG2211         115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGV  194 (467)
T ss_pred             HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHH
Confidence            6667888899999888888889999886 688999999999988888655433332    22222  1238888888888


Q ss_pred             HHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHH
Q 009250          253 PGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG  331 (539)
Q Consensus       253 ~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (539)
                      ++++..+.+++ ..|.+..                             ....++..+.+.+..+..+++|+.+....+..
T Consensus       195 i~~i~~l~~~~~v~ER~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~  245 (467)
T COG2211         195 IGVILLLFCFFNVKERVVE-----------------------------TQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMN  245 (467)
T ss_pred             HHHHHHHHHHHHhhcccCc-----------------------------cccCcccccccHHHHHHHHHccchHHHHHHHH
Confidence            88877776665 4443210                             00000001111222344567777666555544


Q ss_pred             HHHHHhhhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHH
Q 009250          332 ALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAIS  409 (539)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  409 (539)
                      .+.............+|..+.+   +..+.  ...........+++       .++..++.+|+|+|+++.++.++..++
T Consensus       246 l~~~~~~~i~~s~~~yy~~y~l---g~~~l~~~~~~~~~~~~~l~~-------~~~~p~L~~~~gkk~~~~~~~~~~~i~  315 (467)
T COG2211         246 LLLFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLLASGAGLLIG-------LILWPRLVKKFGKKKLFLIGLLLLAVG  315 (467)
T ss_pred             HHHHHHHHHHhhhhheeEEEEc---CChHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence            4433322222222233332222   22222  12233334444444       788999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccC-------cccccchhhHHHHHHHHHHHHHH
Q 009250          410 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVG  481 (539)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~  481 (539)
                      .+++.+..        .+...++.+.....+.+.+ ..+..+++++|..+       .+..|...|...++.-+|.+++.
T Consensus       316 ~~~~~f~~--------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~  387 (467)
T COG2211         316 YLLLYFTP--------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG  387 (467)
T ss_pred             HHHHHhhc--------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence            88887744        2223333333233333333 35677888887754       44668889999999999999999


Q ss_pred             HHHHHHHHHhCc
Q 009250          482 LFFLDLVETFGV  493 (539)
Q Consensus       482 ~~~~~l~~~~g~  493 (539)
                      .+.|++.+..||
T Consensus       388 ~~~g~~L~~~Gy  399 (467)
T COG2211         388 FIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHcCC
Confidence            999999988875

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.78  E-value=6.3e-17  Score=151.96  Aligned_cols=416  Identities=15%  Similarity=0.090  Sum_probs=253.9

Q ss_pred             HHHHHHHHhhhhhccccc-chhHHHHHHHhC----CCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVM-NGPIVSIAKELG----FEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTI  162 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~  162 (539)
                      +..+...-+...++..-+ .+..-++..+++    +  |+.++.-+.+.|..-.-+..+++|+++|| +|+|+++..|.+
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~--~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGF--DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCc--ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            555555666666655333 334456666666    6  77777888888888888999999999999 599999999999


Q ss_pred             HHHHHHHHHHhhh--cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCC--ccccchhhhHHHHHHHHHHHHHhcCCCCC
Q 009250          163 PLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (539)
Q Consensus       163 ~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~  238 (539)
                      ++.+|.++.+.+.  +...++++-++.++|.|..=+....+++|.+|++  +|-..++++.++.++|..++|++.+++.+
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999999984  7889999999999999999999999999999864  37788999999999999999999999999


Q ss_pred             CcchhHHHHHhhHHHHHHHHHHhcccccc---------hHHHHhcCChhHHHHHH----HHH--cCCcchHH--HHHH--
Q 009250          239 DPHWWRTMLYIASLPGFILALGMQFTVES---------PRWLCKGGMLNDAKAVI----ANL--WGESEINK--AIEE--  299 (539)
Q Consensus       239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~---------p~~~~~~~~~~~~~~~~----~~~--~~~~~~~~--~~~~--  299 (539)
                      ..+ |...|.+.++-..+.++..+..++.         |..+..+..........    ...  ...+.+..  ....  
T Consensus       181 ~~g-~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  259 (498)
T COG3104         181 NYG-WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS  259 (498)
T ss_pred             hhC-HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998 9999999888877776665554321         11111111110000000    000  00000000  0000  


Q ss_pred             HHHHH---HhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc--CCC-hhHHHHHHHHHHHh
Q 009250          300 FQLVI---KKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV--GIT-DGALASLLVGVTNF  373 (539)
Q Consensus       300 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~  373 (539)
                      .....   .+.-+.++.. .+..|......+++...+++....-..+.+..|.....++.  |++ ++.+...+-.+..+
T Consensus       260 i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Ii  338 (498)
T COG3104         260 ILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFII  338 (498)
T ss_pred             HHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHH
Confidence            00000   0000000100 11111111112222223333333323333444444333322  111 12222222233323


Q ss_pred             cccccccchhhhHHHHhhhcCCc-------hhhHhhHHHHHHHHHHHHHHhcCCCC-ccchhhHHHHHHHHHHHHHhccc
Q 009250          374 AGLRSEKYCALCASYLMDKEGRQ-------KLLIGSYLGMAISMLLVVGATSLPLD-EDFSHNLSILGTLFYIFTFAIGA  445 (539)
Q Consensus       374 ~~~i~~~~~~~~~g~l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  445 (539)
                      +.       +++..++..|.+++       .-+.+++.+++.+++++......... +...+.++++...++....-...
T Consensus       339 i~-------~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~i  411 (498)
T COG3104         339 LF-------SPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFI  411 (498)
T ss_pred             HH-------HHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            22       66666666664333       23556677777777766655222221 33344455555666666666777


Q ss_pred             ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHH------HHHHhCcchhhHHHHHHHHHHHHhhheee
Q 009250          446 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD------LVETFGVAPVYAGFGGVSLLSALFAYYFI  515 (539)
Q Consensus       446 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  515 (539)
                      .|+..+++....|+...+..+++.......+..++..+.+.      ..+.......|+.++.+.++.........
T Consensus       412 SpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~  487 (498)
T COG3104         412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS  487 (498)
T ss_pred             CHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            88888999999999999999999888888888887777662      33444556677777777776666554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.76  E-value=3.1e-16  Score=144.00  Aligned_cols=353  Identities=16%  Similarity=0.143  Sum_probs=223.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHHHHhhhc--H-HHHHHHHHHhhhchhhhhhh
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT-FQIDTIPLILGAIISAQAHS--L-DEMLWGRFLVGLGIGVNTVL  197 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~a~~--~-~~l~~~r~l~G~~~~~~~~~  197 (539)
                      ++...+...++..+..++..|+.|.++|+.|+||. +-....+..+...+..++++  + +..++.-.+..++.....+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            34566788889999999999999999999997654 44555666666666777655  4 44555678888899999999


Q ss_pred             HHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhc---CCCC---------------CCcchhHHHHHhhHHHHHHHHH
Q 009250          198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG---IPAE---------------DDPHWWRTMLYIASLPGFILAL  259 (539)
Q Consensus       198 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~---~~l~---------------~~~~~wr~~f~~~~~~~~~~~~  259 (539)
                      -.+++.+..++++-++..++-.....+|..+.-++.   ....               +... =|..+.+.++..++..+
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~i  214 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFAL  214 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHh
Confidence            999999999998888877776666666655543332   0011               2223 78888888887776665


Q ss_pred             Hhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhh
Q 009250          260 GMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQ  338 (539)
Q Consensus       260 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (539)
                      -.+ ..++.++ .  +....++                   .    .+.-++.+.+++++.+.+....+++...++.   
T Consensus       215 Pm~~~v~~~~~-~--~~~~~~~-------------------l----~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~---  265 (438)
T COG2270         215 PMILNVHDAEK-I--SSPPPTA-------------------L----RNGFKELKSTFKEIRGRKNLVLFLIARFFYI---  265 (438)
T ss_pred             HHHhccccccc-c--cccchHH-------------------H----HHHHHHHHHHHHHHhcccchHHHHHHHHHHH---
Confidence            443 3444331 0  0000000                   0    0000111234555555554444443333322   


Q ss_pred             hhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHh
Q 009250          339 FAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT  417 (539)
Q Consensus       339 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  417 (539)
                       -+.+.+..+...+-. +.+.++. ...+.....++.+++|    +++.|++.||+|.|+++..++++..+..+...+..
T Consensus       266 -DGv~til~~~~~fg~~~~gls~~-~lll~g~~~~vvA~lg----~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~  339 (438)
T COG2270         266 -DGVNTILAMGGVFGAADLGLSST-ELLLIGIALSVVAALG----AIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE  339 (438)
T ss_pred             -hhHHHHHHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc
Confidence             245555555555555 6666654 3334444444444333    99999999999999998888887777666655521


Q ss_pred             cCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcc-hh
Q 009250          418 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVA-PV  496 (539)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~-~~  496 (539)
                               .....+...+....+..+.+...-++..+..|+++.++.+|+++..+....+++|.+.+.+.+.+|.. ..
T Consensus       340 ---------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g  410 (438)
T COG2270         340 ---------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG  410 (438)
T ss_pred             ---------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence                     12222333233333334456667789999999999999999999999999999999999999888743 33


Q ss_pred             hHHHHHHHHHHHHhhheeeeCCCC
Q 009250          497 YAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      +.....+..++. +.+...|..++
T Consensus       411 ~~~i~vll~iGl-~~L~~v~~~~~  433 (438)
T COG2270         411 VLSIIVLLLIGL-LLLLRVKVPGR  433 (438)
T ss_pred             HHHHHHHHHhhH-hhEEeecCCCC
Confidence            444444444443 34455555433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=6.1e-17  Score=160.21  Aligned_cols=309  Identities=17%  Similarity=0.129  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  166 (539)
                      ..+.++++..+..++....+...+..+++.|++  ++.+.|++.+.+-++..+...+..+..-|.-|-+++.+|++++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i--~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKI--SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            446777888888888889999999999999999  777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh--------------------h------------------------------c-HH-HHHHHHHHhhhchhhh
Q 009250          167 GAIISAQA--------------------H------------------------------S-LD-EMLWGRFLVGLGIGVN  194 (539)
Q Consensus       167 ~~~~~~~a--------------------~------------------------------~-~~-~l~~~r~l~G~~~~~~  194 (539)
                      +++++++-                    +                              + ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99999862                    0                              0 12 4667899999999999


Q ss_pred             hhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC------------------cchhHHHHHhhHHHHHH
Q 009250          195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD------------------PHWWRTMLYIASLPGFI  256 (539)
Q Consensus       195 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~------------------~~~wr~~f~~~~~~~~~  256 (539)
                      ++.+.+|+-|...+++-...+|++.....+|.++|.++|+++...                  .|.|+.-|++.+.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999865431                  11288888899999888


Q ss_pred             HHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHH
Q 009250          257 LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLL  336 (539)
Q Consensus       257 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (539)
                      ..+..+++|++.+-..   ++.++++    .+...+..+ .++......++-++.+...+.+++++.+    +...+...
T Consensus       335 ~a~p~f~fPk~lp~~~---~~~~~~~----~~~~k~~~~-~~~~~~~~~~~ikdfp~s~~~ll~N~if----~~~~l~~~  402 (735)
T KOG3626|consen  335 SAVPLFFFPKELPKSQ---KRKRARD----LHVLKTESG-GAKSDKTFGKKIKDFPKSIKRLLSNPIF----MLVVLASV  402 (735)
T ss_pred             HHHHHHhCcccCcccc---ccchhhh----hcccccccc-cccCCcchhhhHHHHHHHHHHHhcCchH----HHHHHHHH
Confidence            8888888887642110   0000000    000000000 0000000000001122344556666544    33444444


Q ss_pred             hhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCC--chhhHhhHHHHHHHHHH
Q 009250          337 QQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGR--QKLLIGSYLGMAISMLL  412 (539)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~  412 (539)
                      .....+..+..|+|.|++.....++..+..+.+...+++   ..++.+++|++..|+.-  |....+.++...+.++.
T Consensus       403 ~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~---~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  403 IESLAITGYITFLPKYLETQFGISASLANILTGSIGVPA---AAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             HHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhh---hhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence            455567778889999998766555556666666655554   23448899999998754  44554444444444444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.73  E-value=3.2e-19  Score=177.00  Aligned_cols=391  Identities=16%  Similarity=0.143  Sum_probs=3.0

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      ++.+++..++..+..+.....+..+++.|++  ++.+.|++.+.+-++..+..++..++.+|..|-|.+..|.+++++++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l--~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~   82 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGL--SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS   82 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence            4455666666677778888889999999999  89999999999999999999999999999888899999999999999


Q ss_pred             HHHHhh----h----------------------------------------------cHHHHHHHHHHhhhchhhhhhhH
Q 009250          169 IISAQA----H----------------------------------------------SLDEMLWGRFLVGLGIGVNTVLV  198 (539)
Q Consensus       169 ~~~~~a----~----------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~  198 (539)
                      +++++-    +                                              -+..++++.++.|+|....++.+
T Consensus        83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG  162 (539)
T PF03137_consen   83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG  162 (539)
T ss_dssp             ---------------------------------------------------------------------SSS--------
T ss_pred             HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence            998751    0                                              02347788999999999999999


Q ss_pred             HHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc---------------------chhHHHHHhhHHHHHHH
Q 009250          199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFIL  257 (539)
Q Consensus       199 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~  257 (539)
                      .+|+-|..++++-+..+|++.+...+|.++|.++|+.+...+                     |.|..-|++.+++.++.
T Consensus       163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~  242 (539)
T PF03137_consen  163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS  242 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998765310                     12777777777777777


Q ss_pred             HHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHh
Q 009250          258 ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQ  337 (539)
Q Consensus       258 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (539)
                      .+..+++|+.-+-..+  ..++.+....+....+..+...++......+..++.....+++++|+.+..    ..+....
T Consensus       243 aipl~~FPk~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~----~~la~~~  316 (539)
T PF03137_consen  243 AIPLFFFPKKLPGTSE--RQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMC----LILAGVF  316 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHcCCccCCCccc--ccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHH----HHHHHHH
Confidence            7777777765321100  000000000000000000000000000001112223344555666654433    3333344


Q ss_pred             hhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC--CchhhHhhHHHHHHHHHHHHH
Q 009250          338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG--RQKLLIGSYLGMAISMLLVVG  415 (539)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~  415 (539)
                      .......+..+.|.|++.....++..+..+.++..+++   ..++.+++|++.+|++  .|..+....+...++.+.+..
T Consensus       317 ~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~---~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~  393 (539)
T PF03137_consen  317 ESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPG---AALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSP  393 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcch---hheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence            44456677788999998765555556666666655544   3445899999999974  344444444444443333111


Q ss_pred             H-----hc-------CCCC------c-------------------------cc-hhhHHHHHHH-HH-HHHHhccccccc
Q 009250          416 A-----TS-------LPLD------E-------------------------DF-SHNLSILGTL-FY-IFTFAIGAGPVT  449 (539)
Q Consensus       416 ~-----~~-------~~~~------~-------------------------~~-~~~~~~~~~~-~~-~~~~~~~~~~~~  449 (539)
                      .     ..       .+..      .                         .. .......... ++ .+..+....|..
T Consensus       394 ~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~  473 (539)
T PF03137_consen  394 LFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST  473 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh
Confidence            1     00       0110      0                         00 0011111111 11 112222233433


Q ss_pred             ccccccccCcccccchhhHHHHHHH-HHHHHHHHHHHHHHHHh
Q 009250          450 GLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVETF  491 (539)
Q Consensus       450 ~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~l~~~~  491 (539)
                       ...-+.+|+++|+.+.|+...+.+ +|.+-+|.++|.++|..
T Consensus       474 -~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  474 -LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -------------------------------------------
T ss_pred             -eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence             445588999999999999998876 56678999999999863

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.71  E-value=8.3e-17  Score=161.62  Aligned_cols=181  Identities=15%  Similarity=0.106  Sum_probs=139.6

Q ss_pred             chhHHHHH-HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHH---HHhhhcHHHHHH
Q 009250          107 NGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLW  182 (539)
Q Consensus       107 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~a~~~~~l~~  182 (539)
                      ...+|.+. +++|.  +..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+.   ...+++...+++
T Consensus       270 ~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (490)
T PRK10642        270 LTYMPSYLSHNLHY--SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA  347 (490)
T ss_pred             HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34556544 56787  6666778888889999999999999999999999988887654443332   223456778888


Q ss_pred             HHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhc
Q 009250          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (539)
Q Consensus       183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  262 (539)
                      ++++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+..++|+..+++..+.+++.++..+
T Consensus       348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            99999998887777788889999999999999997544455556778888777766544488887777777777777777


Q ss_pred             ccccchHHHHhc-----CChhHHHHHHHHHcC
Q 009250          263 FTVESPRWLCKG-----GMLNDAKAVIANLWG  289 (539)
Q Consensus       263 ~~~~~p~~~~~~-----~~~~~~~~~~~~~~~  289 (539)
                      ++||+|+|+.++     ++.+|+++.+.+++.
T Consensus       428 ~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        428 TMKETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             HhccccCCCCCCccccccchhhHHHHhhcccc
Confidence            789999998755     888999999988873

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.68  E-value=4.6e-14  Score=130.36  Aligned_cols=330  Identities=18%  Similarity=0.129  Sum_probs=212.4

Q ss_pred             HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhc-----chHHHHH-HHHHHHHHHHHHHhh-----h-----
Q 009250          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQI-DTIPLILGAIISAQA-----H-----  175 (539)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~a-----~-----  175 (539)
                      .+..|+++  .....+.+.+...+.. ...+.+|+.+|+.+     ||..+++ |.++...+..+..++     .     
T Consensus         5 VMIvEL~v--pA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~   81 (403)
T PF03209_consen    5 VMIVELGV--PAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS   81 (403)
T ss_pred             hHHHHhcc--HHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence            45678888  7777788887777654 46899999999999     8866665 556656655555543     2     


Q ss_pred             ---cH-H--HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009250          176 ---SL-D--EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (539)
Q Consensus       176 ---~~-~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~  249 (539)
                         .+ +  ...+.-.+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+.+.+..-|..-.+
T Consensus        82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen   82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence               21 1  23446788999999999999999999999999999999999999999999999998877766533333333


Q ss_pred             hH--HHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHH
Q 009250          250 AS--LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA  327 (539)
Q Consensus       250 ~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (539)
                      ..  ++.++..++..+-.|.+. ..                           .....++++......+++++.++..+++
T Consensus       162 ~~~a~i~~~l~~ia~wg~E~r~-~~---------------------------~~~~~~~~~~~f~~a~~~~~~~~~a~~f  213 (403)
T PF03209_consen  162 QGVALIALLLNLIALWGQEPRR-SR---------------------------RAAAAERPRPPFREAWRQVWASPQARRF  213 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccCC-cc---------------------------cccCCCCCCccHHHHHHHHHhCCChhHH
Confidence            22  222223333333334321 00                           0001112223334567778888887776


Q ss_pred             HHHHHHHHHhhhhhhHHHHHhHHHHH-HHcCCCh--hHHHHHHHHHHHhcccccccchhhhHHHHhh-hcCCchhhHhhH
Q 009250          328 FIGGALFLLQQFAGINGVLYFSSLTF-QDVGITD--GALASLLVGVTNFAGLRSEKYCALCASYLMD-KEGRQKLLIGSY  403 (539)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d-r~g~r~~~~~~~  403 (539)
                      +...++..+    .+......+..|- +.++.+.  ........+...+.+       -.+.|++.. |.++++...+++
T Consensus       214 ~~fl~l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G-------~~~~g~~l~~~~~~~~~a~~G~  282 (403)
T PF03209_consen  214 FVFLFLGTL----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLG-------MLLAGFLLSRRLGKKRTAALGC  282 (403)
T ss_pred             HHHHHHHHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCCCchHHHHHHH
Confidence            665555444    2333333333333 3334442  233344455555555       666666655 678888888888


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc-cccccccccccCcccccchhhHHHHHHHHHHHHHHH
Q 009250          404 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL  482 (539)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~  482 (539)
                      ....+++.++.......       ..+.+-...+.++++.|.. ....+...++..++..|..+|.....+.+...++..
T Consensus       283 ~~~~~~f~lii~a~~~~-------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~  355 (403)
T PF03209_consen  283 LLGALAFALIILAGPLG-------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTF  355 (403)
T ss_pred             HHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            88888877776644321       2333333444444444443 222344557778888999999999999999999999


Q ss_pred             HHHHHHHH
Q 009250          483 FFLDLVET  490 (539)
Q Consensus       483 ~~~~l~~~  490 (539)
                      +.|.+.|.
T Consensus       356 ~GG~~~D~  363 (403)
T PF03209_consen  356 LGGALRDL  363 (403)
T ss_pred             HHHHHHHH
Confidence            99988774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.61  E-value=2.4e-15  Score=124.03  Aligned_cols=134  Identities=21%  Similarity=0.326  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCC
Q 009250          130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK  209 (539)
Q Consensus       130 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  209 (539)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            45567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009250          210 YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT  264 (539)
Q Consensus       210 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  264 (539)
                      +|++..++.+....+|..+++.+++.+.+..+ |++.|++.++..++..+...++
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999988877 9999999888877776655543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.56  E-value=1.4e-13  Score=133.34  Aligned_cols=362  Identities=19%  Similarity=0.153  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHH----HHHHHHHHhhhhhhhhhhcchHHHHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIF----IAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  162 (539)
                      .......+-.+..++......+..+.....++.+.+.. .+......    .+...+.++..|.++||+|||..+....+
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            34555555556666666666677777777666543332 23334443    57778899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhhch--hhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc
Q 009250          163 PLILGAIISAQAHSLDEMLWGRFLVGLGI--GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (539)
Q Consensus       163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~  240 (539)
                      ...+..++..+.. +|.++    +.|+..  +.......++++|....++|....++.......+..++|.+++.+.+..
T Consensus       101 ~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~  175 (463)
T KOG2816|consen  101 GTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL  175 (463)
T ss_pred             HHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            9988888888776 33333    444433  3467788889999999999999999999999999999999999998877


Q ss_pred             chhHHHHHhhHHHHHHHHHHhc-ccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhh
Q 009250          241 HWWRTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL  319 (539)
Q Consensus       241 ~~wr~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (539)
                      + .-.+|.+..+..++..+... ++||+-.   .+.+ +++.  ......              ...........++...
T Consensus       176 ~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~-~~~~--~~~~~~--------------~~~~~~~~~~~~~~~~  234 (463)
T KOG2816|consen  176 G-IALVFLIAAASGILSLLYMLLFLPESLQ---EKER-SDAT--LRELTP--------------GSLDSSHVADAFQSLT  234 (463)
T ss_pred             C-chHHHHHHHHHHHHHHHHHhhccccccC---cccc-cccc--ccccCC--------------Ccccchhhhhhhhhhc
Confidence            7 78888888888887776554 4666531   0000 0000  000000              0000000011112222


Q ss_pred             ccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchhhhH-HHHhhhcCCch
Q 009250          320 EEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCALCA-SYLMDKEGRQK  397 (539)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~l~dr~g~r~  397 (539)
                      +....+..+.......+..........-..+.+++ ..+.+.. ......+...+.+.++    .++. +.+...++.|+
T Consensus       235 ~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~-~~s~~~~~~~~~~~i~----~l~~~~~l~~~l~~~~  309 (463)
T KOG2816|consen  235 KVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKK-EFSDLLSLVSILGIIS----QLLLLPLLSSILGEKR  309 (463)
T ss_pred             ccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhh
Confidence            21111222221212111110000000000111222 2233333 3443344444444333    4444 47788889888


Q ss_pred             hhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHH
Q 009250          398 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN  477 (539)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  477 (539)
                      ....|+....+....+.+..        ..|  ..........+.....|...+..+...+++++|.+.++...+..+.+
T Consensus       310 ~i~lGl~~~~~~~~~~af~~--------~~w--~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~  379 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFAT--------ETW--MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG  379 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhc--------cch--hhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhh
Confidence            88888888888888887732        222  22223333334444566677888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 009250          478 FLVGLFFLDLVET  490 (539)
Q Consensus       478 ~~~~~~~~~l~~~  490 (539)
                      .++|.+.+.++..
T Consensus       380 ~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  380 VVSPALYGNIFAL  392 (463)
T ss_pred             hhhHHHHHHHHHH
Confidence            9999999988654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.54  E-value=1.6e-13  Score=134.04  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=129.9

Q ss_pred             hhHH-HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 009250          108 GPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (539)
Q Consensus       108 ~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  186 (539)
                      ...| .+++++|.  ++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......++++.+.+++.+++
T Consensus       237 ~~~p~~l~~~~~~--~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIINELHL--PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3455 45567888  77788988888888888899999999999999998888777666666556667888888889999


Q ss_pred             hhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccccc
Q 009250          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (539)
Q Consensus       187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  266 (539)
                      .+++.+...+....+..|.+|+ +|++++++++....+|..+++.+++.+.+..+ |+..|++.+++.++.++..++.+|
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9998888888888888999986 49999999999999999999999999988877 999999988888887777776654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=7.9e-14  Score=143.06  Aligned_cols=140  Identities=14%  Similarity=-0.025  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcC
Q 009250          127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA  206 (539)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  206 (539)
                      .+...+..++..++.++.|+++||+|||++++++.++.++++++.+++++...+++++++.|++.++.++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677888999999999999999999999999999999999999999888999999999998889999999999999


Q ss_pred             CCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccch
Q 009250          207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP  268 (539)
Q Consensus       207 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p  268 (539)
                      |.++|++++|+.++...+|.+++|++++.+... + ...+|++.+++.++.+++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T-KAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999877653 2 56788888888777777777788763

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.54  E-value=4.9e-14  Score=139.16  Aligned_cols=145  Identities=14%  Similarity=0.044  Sum_probs=127.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHH
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~  201 (539)
                      +..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....+
T Consensus       260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  339 (420)
T PRK09528        260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY  339 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677999999999999999999999999999999999999999999999999999999999999999998888888899


Q ss_pred             HHhcCCCCccccchhh-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc-cccc
Q 009250          202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES  267 (539)
Q Consensus       202 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~  267 (539)
                      +.|.+|++.|+...+. ++....+|.++++.+.+++.+..| |+..|++.+++.++..++.++ .+++
T Consensus       340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999887765 677888999999999999999888 999999988877766554444 3443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.52  E-value=2.1e-14  Score=140.84  Aligned_cols=160  Identities=13%  Similarity=0.076  Sum_probs=130.5

Q ss_pred             hhHHHHHHHhCCCC------CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----cH
Q 009250          108 GPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH----SL  177 (539)
Q Consensus       108 ~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----~~  177 (539)
                      ...+...++.|.+.      +....+...++..++..++.++.|+++||+|+|+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            44455566666421      225568999999999999999999999999999999999999998877776642    24


Q ss_pred             HHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhH-HHHHHHHHHHHHhcCCCCCCcc-----hhHHHHHhhH
Q 009250          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-----WWRTMLYIAS  251 (539)
Q Consensus       178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~-----~wr~~f~~~~  251 (539)
                      +.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|..+||++++.+.+..+     +|+..|++.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            667788999999999889999999999999999999999997 6789999999999999887632     2999999988


Q ss_pred             HHHHHHHHHhcc-cccc
Q 009250          252 LPGFILALGMQF-TVES  267 (539)
Q Consensus       252 ~~~~~~~~~~~~-~~~~  267 (539)
                      ++.++..++.++ ++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            887777665544 5544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.52  E-value=1.7e-13  Score=134.94  Aligned_cols=158  Identities=21%  Similarity=0.142  Sum_probs=135.1

Q ss_pred             hhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q 009250          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLV  187 (539)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  187 (539)
                      ...|.+.++.|.  +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.
T Consensus       241 ~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
T PRK11551        241 NWLPSLLVGQGL--SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA  318 (406)
T ss_pred             HHHHHHHHhCCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            346777788888  778889999999999999999999999999999999988887777777777888888888888999


Q ss_pred             hhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccc
Q 009250          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVES  267 (539)
Q Consensus       188 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~  267 (539)
                      |++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+.+..++|...+++.+...++..++.+++.++
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVSR  398 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99888888999999999999999999999999999999999999999998876557778877776666666555554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.50  E-value=7.2e-14  Score=136.17  Aligned_cols=148  Identities=18%  Similarity=0.065  Sum_probs=128.2

Q ss_pred             hhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcH--HHHHHHHH
Q 009250          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGRF  185 (539)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~  185 (539)
                      ...+.+.++++.  ++.+.+++.+.+.++..++.++.|++.||+|||+.+..+.++.+++.++..+.++.  ..+++..+
T Consensus       226 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       226 GLYKPYGQSLGL--SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            345556778887  77788999999999999999999999999999999999999999998888877643  33456678


Q ss_pred             HhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHH
Q 009250          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (539)
Q Consensus       186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~  258 (539)
                      +.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ |++.|++.+++.++..
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            88988888888888899999999999999999999999999999999999988888 9999999887776653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.50  E-value=3.3e-13  Score=130.13  Aligned_cols=168  Identities=26%  Similarity=0.348  Sum_probs=148.5

Q ss_pred             HHHhhhhhcccccchhHHHHHHHh-CCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchH-HHHHHHHHHHHHHHHH
Q 009250           94 MSNFLFGYHIGVMNGPIVSIAKEL-GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR-TFQIDTIPLILGAIIS  171 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~  171 (539)
                      +..+.............|.+.++. |.  ++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  259 (352)
T cd06174         182 LAFFLLSFGYYGLLTYLPLYLQEVLGL--SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL  259 (352)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            334444455555556667666665 77  8888999999999999999999999999999999 9999999999999999


Q ss_pred             HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhH
Q 009250          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (539)
Q Consensus       172 ~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~  251 (539)
                      .+.++.+.+++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.|++.+
T Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~  338 (352)
T cd06174         260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILA  338 (352)
T ss_pred             HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998777 999999999


Q ss_pred             HHHHHHHHHhccc
Q 009250          252 LPGFILALGMQFT  264 (539)
Q Consensus       252 ~~~~~~~~~~~~~  264 (539)
                      ++.++..+..+++
T Consensus       339 ~~~~i~~i~~~~~  351 (352)
T cd06174         339 ALALLAALLLLLL  351 (352)
T ss_pred             HHHHHHHHHheec
Confidence            9988877765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.49  E-value=3.4e-13  Score=132.40  Aligned_cols=156  Identities=17%  Similarity=0.112  Sum_probs=133.1

Q ss_pred             chhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 009250          107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (539)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  186 (539)
                      ...++.+.++.|.  +.  .++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus       236 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (399)
T PRK05122        236 ATFITLYYAARGW--DG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL  311 (399)
T ss_pred             HHHHHHHHHHccc--cc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3445555555565  33  3667788889999999999999999999999999999999998888888898888899999


Q ss_pred             hhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccccc
Q 009250          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (539)
Q Consensus       187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  266 (539)
                      .|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.++..++..+..+++++
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999898888888999999999999999999999999999999998888777 999999988888877766666555


Q ss_pred             c
Q 009250          267 S  267 (539)
Q Consensus       267 ~  267 (539)
                      +
T Consensus       391 ~  391 (399)
T PRK05122        391 R  391 (399)
T ss_pred             c
Confidence            4

>PRK12382 putative transporter; Provisional

Probab=99.47  E-value=4.4e-13  Score=131.21  Aligned_cols=153  Identities=12%  Similarity=0.080  Sum_probs=131.6

Q ss_pred             cchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 009250          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF  185 (539)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~  185 (539)
                      .....+.+.++.+.  +.  .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.+
T Consensus       235 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (392)
T PRK12382        235 IGTFVSLYFASKGW--AM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHhcCC--ch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            33444555566665  43  366677788888999999999999999999999999999999888888899888888999


Q ss_pred             HhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc
Q 009250          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (539)
Q Consensus       186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  263 (539)
                      +.|++.+...+...+.+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |+..|++.++..++..+..++
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHh
Confidence            99999998889888899999999999999999999999999999999999998888 999999988887777665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.46  E-value=6.9e-13  Score=129.07  Aligned_cols=162  Identities=12%  Similarity=-0.013  Sum_probs=138.4

Q ss_pred             HHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh
Q 009250           95 SNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA  174 (539)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  174 (539)
                      ..++.......+....|.+.+|+|.  ++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++
T Consensus       213 ~~~l~~~~~~~~~~~~~~~l~~~g~--s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       213 AVCLIQGAHAAYYGFSAIYWQAAGI--SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence            3344344444455566766678888  88889999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhH-HHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHH
Q 009250          175 HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP  253 (539)
Q Consensus       175 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~  253 (539)
                      ++.+.+++.+++.|++.+...+....++.+. |+++|++..++++ ...++|..+++.++|++.++.+ + ..|++.+.+
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~  367 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAII  367 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHH
Confidence            9999999999999999999999999999998 9989999999986 5788999999999999999887 6 567777777


Q ss_pred             HHHHHHHh
Q 009250          254 GFILALGM  261 (539)
Q Consensus       254 ~~~~~~~~  261 (539)
                      +++..++.
T Consensus       368 ~~~~~~~~  375 (382)
T TIGR00902       368 AAAAFFLI  375 (382)
T ss_pred             HHHHHHHH
Confidence            66655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=5.6e-13  Score=131.43  Aligned_cols=158  Identities=16%  Similarity=0.144  Sum_probs=132.8

Q ss_pred             ccchhHHHHHHHhCCCCCc--hhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHH
Q 009250          105 VMNGPIVSIAKELGFEGNP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (539)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~  182 (539)
                      ...+..+.+..+.+.+.+.  ...+++.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI  316 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3445556555554331121  23466777788888899999999999999999999999988888888888888999999


Q ss_pred             HHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhc
Q 009250          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (539)
Q Consensus       183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  262 (539)
                      .+++.|++.+...+...+++.+..++++||+.+++.+....+|..+||.+++.+.+..+ |++.|++.+++.++..+..+
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988888 99999999988887776655


Q ss_pred             c
Q 009250          263 F  263 (539)
Q Consensus       263 ~  263 (539)
                      +
T Consensus       396 ~  396 (408)
T PRK09874        396 N  396 (408)
T ss_pred             H
Confidence            4

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=5.2e-13  Score=132.67  Aligned_cols=163  Identities=15%  Similarity=0.090  Sum_probs=131.9

Q ss_pred             HHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh--cchHHHH--HHHHHHHHHHHH
Q 009250           95 SNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQ--IDTIPLILGAII  170 (539)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~--~~~~~~~~~~~~  170 (539)
                      ..++..+........+|.+.+++|.  +..+.+++.++..++..+++++.|+++||.  ++|+...  .+.++.+++.++
T Consensus       249 ~~~l~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll  326 (455)
T TIGR00892       249 GNVIMFLGFFAPIIFLVPYAKDKGV--DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL  326 (455)
T ss_pred             HHHHHHHHccchHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444566777788888  888889999999999999999999999983  3443333  344444566666


Q ss_pred             HHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh
Q 009250          171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (539)
Q Consensus       171 ~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~  250 (539)
                      +.++++++.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|..+||.+++.+.+..++|++.|++.
T Consensus       327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~  406 (455)
T TIGR00892       327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYAS  406 (455)
T ss_pred             HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHh
Confidence            77788999999999999999999999999999999999999999999999999999999999999988765599999998


Q ss_pred             HHHHHHHHH
Q 009250          251 SLPGFILAL  259 (539)
Q Consensus       251 ~~~~~~~~~  259 (539)
                      +++.++..+
T Consensus       407 ~~~~li~~~  415 (455)
T TIGR00892       407 GSIVVSAGL  415 (455)
T ss_pred             hHHHHHHHH
Confidence            887666544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.45  E-value=1.4e-12  Score=126.92  Aligned_cols=150  Identities=19%  Similarity=0.197  Sum_probs=128.4

Q ss_pred             HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhch
Q 009250          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI  191 (539)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  191 (539)
                      .+.+++|.  ++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++.
T Consensus       225 ~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       225 LIIHELGL--PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577888  7778888888887777888999999999999999998888877777666677788888888999999999


Q ss_pred             hhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccc
Q 009250          192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV  265 (539)
Q Consensus       192 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  265 (539)
                      +...+....++.|..|++ +++++++++....+|..+++.+++.+.+..+ |+..|++.++..++..+...+++
T Consensus       303 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheec
Confidence            988888889999998765 6799999999999999999999999988877 99999999888887777665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.41  E-value=1.4e-11  Score=115.57  Aligned_cols=368  Identities=13%  Similarity=0.081  Sum_probs=214.5

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHH-hCCCCCchhh-HHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILE-GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  166 (539)
                      ...+|+-.|+..+-- .-....|.+.+. .|+  ++.|+ .-+.-+..-.+....++...+.|..+.|++++++.+...+
T Consensus         7 ~~llc~~gf~~~frP-sEPfl~~yL~~~~kn~--T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~   83 (412)
T PF01770_consen    7 TLLLCLFGFFKEFRP-SEPFLTPYLTGPDKNF--TEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII   83 (412)
T ss_pred             HHHHHHHHHHHhcCC-CCccchHHHcCCccCC--CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            444444444433322 112233445443 566  55544 3566777788889999999999999999999999999999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc-hhHH
Q 009250          167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRT  245 (539)
Q Consensus       167 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-~wr~  245 (539)
                      ..++..+.++...+-+..++-|++.+ ...+-.+++-...++++-.++.+...++..+|..++.++|..+....+ ..+.
T Consensus        84 t~~lll~~~sv~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~  162 (412)
T PF01770_consen   84 TWLLLLFGTSVLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ  162 (412)
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999999999999999999999987 577888899889999988999999999999999999988887665322 2777


Q ss_pred             HHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHH--HHHHHHhcCCCCc-------chhh
Q 009250          246 MLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE--FQLVIKKDGSDLD-------SQWS  316 (539)
Q Consensus       246 ~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~  316 (539)
                      ..++......++.+..+++|..++-..-+++..+... .......+..+...+.  ..+.........+       ..++
T Consensus       163 L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  241 (412)
T PF01770_consen  163 LNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFK  241 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHH
Confidence            7777777666777777777775542211111111000 0000000000000000  0000000000011       1122


Q ss_pred             hhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcC--CChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC
Q 009250          317 ELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG--ITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG  394 (539)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g  394 (539)
                      +..+++.    ++...+++....+++.....|...+.++..  .......+.+-++..+.+.++    .+..|++..++.
T Consensus       242 ~~y~~~~----ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~----al~~g~v~~~w~  313 (412)
T PF01770_consen  242 SCYSNPR----LLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIA----ALLAGYVKVNWD  313 (412)
T ss_pred             HHhcCch----HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHH----HHHHhHhhcchH
Confidence            2333333    333445555555677777888888887771  223346666767777776555    888888855555


Q ss_pred             CchhhHhhHHHH--HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHH
Q 009250          395 RQKLLIGSYLGM--AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSV  472 (539)
Q Consensus       395 ~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~  472 (539)
                      +..-+.++....  +..++++...        .+.+......+++...+.. ..++....++.....+.-|..+|++.++
T Consensus       314 ~~~~l~l~~~S~l~a~~L~lm~~t--------~~Iwv~Y~~yIif~~~y~f-liTiA~~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  314 RWGELALGVFSLLQAGLLFLMSFT--------GNIWVCYAGYIIFRSLYMF-LITIASFQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccceeeeeeeHHHH
Confidence            544333333322  2223333221        1222233333333333322 2233334444555566678888887776


Q ss_pred             HHHHHH
Q 009250          473 HWVCNF  478 (539)
Q Consensus       473 ~~~g~~  478 (539)
                      ..+-..
T Consensus       385 Al~LQt  390 (412)
T PF01770_consen  385 ALVLQT  390 (412)
T ss_pred             HHHHHH
Confidence            554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.40  E-value=1.1e-11  Score=112.84  Aligned_cols=246  Identities=14%  Similarity=0.075  Sum_probs=153.4

Q ss_pred             cccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 009250          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG  183 (539)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~  183 (539)
                      .+.+|..-.+-+++|.  +..|++.+....+...++..++.|.++||+|||+.-+..+++.+++++. -..++++.++++
T Consensus        51 WLQGpY~Y~LY~~yg~--~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~G  127 (354)
T PF05631_consen   51 WLQGPYLYALYESYGF--SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLG  127 (354)
T ss_pred             HhhcchhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHH
Confidence            4455666566678999  8999999999999999999999999999999999999999999999974 456899999999


Q ss_pred             HHHhhhchhhhhhhHHHHH-HhcCCCC----ccccchhhhH-HHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHHHHH
Q 009250          184 RFLVGLGIGVNTVLVPIYI-SEVAPTK----YRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFI  256 (539)
Q Consensus       184 r~l~G~~~~~~~~~~~~~i-~~~~~~~----~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~-~wr~~f~~~~~~~~~  256 (539)
                      |++.|++.+..+.+--++. .|.-..+    ..+..++... ...++-.+++.+++.++.+..+ +-..+|....+..++
T Consensus       128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~  207 (354)
T PF05631_consen  128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV  207 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            9999999999999988875 4442211    1122222222 2233334555555555554433 136788887777777


Q ss_pred             HHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHH
Q 009250          257 LALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFL  335 (539)
Q Consensus       257 ~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (539)
                      ..+++.. .+|...      +..             +..+.           .++.+..++.++++++   .+.+.....
T Consensus       208 ~~~~I~~~W~ENyg------~~~-------------~~~~~-----------~~~~~~a~~~i~~d~r---il~LG~~qs  254 (354)
T PF05631_consen  208 AAVLILKTWPENYG------DTS-------------SSSSL-----------SGSFREAWRAILSDPR---ILLLGLIQS  254 (354)
T ss_pred             HHHHHHhcccccCC------Ccc-------------cccch-----------HHHHHHHHHHHHcCch---hHHHHHHHH
Confidence            6665543 455421      000             00000           0001123344444443   445555666


Q ss_pred             HhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh
Q 009250          336 LQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK  392 (539)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr  392 (539)
                      +.....+.....|.|.+-   ..+.....+++++......++|    +.+..++..+
T Consensus       255 lFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlG----S~lf~~l~s~  304 (354)
T PF05631_consen  255 LFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLG----SSLFSRLLSK  304 (354)
T ss_pred             HHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHH----HHHHHHHHhC
Confidence            666666666666667665   2222223455555555554444    6666554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.40  E-value=2.4e-12  Score=125.95  Aligned_cols=357  Identities=15%  Similarity=0.103  Sum_probs=196.7

Q ss_pred             hhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhc-----chHHHHHHHHHHHHHHHHHHhh----hcHH
Q 009250          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQIDTIPLILGAIISAQA----HSLD  178 (539)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~a----~~~~  178 (539)
                      +..+.+.+++|+  ++.+...+.+...+...+ .+++|.++|.+-     ||+-++++.++..++.+..+..    .+..
T Consensus        11 ~~~~~l~~~l~l--s~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   11 AIYPFLKDDLGL--SPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            456788999999  888888777777776554 788999999763     5555566777776666655553    3566


Q ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHhcCCC--CccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHH
Q 009250          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI  256 (539)
Q Consensus       179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~  256 (539)
                      ...++-++..+|.+....++.+++.|...+  ++||...+.......+|.+++..++|.+.+..+ +|..|.+.+++.++
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLL  166 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHH
Confidence            677778889999999999999999999843  336778888888999999999999999998888 99999998887777


Q ss_pred             HHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHH-HHHHHH
Q 009250          257 LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI-GGALFL  335 (539)
Q Consensus       257 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  335 (539)
                      ..+..+++.|+.+    +...++...    ..++ ..+.....        .++.....++.++.+..+...+ ..++..
T Consensus       167 ~~~~~~~~~~e~~----~~~~~~~~~----~~~~-~~~~~~~~--------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  229 (433)
T PF03092_consen  167 MLIVALFLLEERK----VRPADEVFS----FGKE-EVPCLFGS--------FREQLSELWRALQQRAIWQPILFFIFFFN  229 (433)
T ss_pred             HHHHHHHhhhhcc----ccccchhhc----cccc-ccchhhHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            7665555544310    000000000    0000 00000000        0000112333344443333222 111111


Q ss_pred             HhhhhhhHH-HHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHH
Q 009250          336 LQQFAGING-VLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVV  414 (539)
Q Consensus       336 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  414 (539)
                      ..... ... ..++........+++.. ..+.+..+..+..++|    ..+......+..-|+++....++..+..+.-.
T Consensus       230 ~~~~~-~~a~~fy~~~~~~~gp~fs~~-f~~~~~~vg~~~~l~g----~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~  303 (433)
T PF03092_consen  230 LPPSI-SSASSFYFQTDALGGPHFSPS-FYGTLSIVGSIASLLG----ILLYRKYFSNWSWRRIFVVTTLVSVLASLFDL  303 (433)
T ss_pred             hccCC-CCccEEEEEeccccccccCHH-HHHHHHHHHHHHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHhcccE
Confidence            11110 011 11111111111113332 3333333333332111    44444444444555555544443333222111


Q ss_pred             HHh-cCCCCcc-chhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009250          415 GAT-SLPLDED-FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG  492 (539)
Q Consensus       415 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g  492 (539)
                      ... .....-. ...+..+.-..+.-........|. ..+.+|+.|+..-|+.+|+..++.++|..++..+...+.+..|
T Consensus       304 ~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  304 LLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             EEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            100 0000000 011111111222222222223343 3567899999999999999999999999999999998887766

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10054 putative transporter; Provisional

Probab=99.38  E-value=1e-11  Score=121.28  Aligned_cols=162  Identities=12%  Similarity=0.063  Sum_probs=110.0

Q ss_pred             hhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcC
Q 009250          341 GINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL  419 (539)
Q Consensus       341 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  419 (539)
                      +......+.+.++ ++.+.+.. ..+...++..+.+.++    .++.|+++||+|||+.+..+.+...++.+.+.+..  
T Consensus        22 g~~~~~~~l~~~l~~~~g~s~~-~~g~~~s~~~~~~~~~----~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~--   94 (395)
T PRK10054         22 GRGATLPFMTIYLSRQYSLSVD-LIGYAMTIALTIGVVF----SLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN--   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--
Confidence            3444444555555 45676654 5666666555555333    89999999999999999888887777776665521  


Q ss_pred             CCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Q 009250          420 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG  499 (539)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  499 (539)
                             +...................+....+..|..|+++|+++.|+.+...++|.+++|.+.+.+.+ .||+..|.+
T Consensus        95 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~  166 (395)
T PRK10054         95 -------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL  166 (395)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence                   121222211121111122345566778899999999999999999999999999999998875 789999988


Q ss_pred             HHHHHHHHHHhhheeeeC
Q 009250          500 FGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~  517 (539)
                      .+++.++..++..+..++
T Consensus       167 ~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            877777665554444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.38  E-value=6e-12  Score=125.93  Aligned_cols=172  Identities=17%  Similarity=0.081  Sum_probs=125.5

Q ss_pred             HHHHHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      ++.+++..++............|. +.+++|+  +..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGF--SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            344444444444443334455664 4567888  8888899999999999999999999999999998877655544443


Q ss_pred             HHH--HHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHH-HHHHHHHhcCCCCC------
Q 009250          168 AII--SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAED------  238 (539)
Q Consensus       168 ~~~--~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~------  238 (539)
                      ..+  ....++...+.+.+++.|++.............|.+|+++||.+.|+.+....+ |..++|.+.|.+.+      
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~  417 (467)
T PRK09556        338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT  417 (467)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence            322  233456767778888888654444434446677999999999999999988886 77899999888888      


Q ss_pred             ------CcchhHHHHHhhHHHHHHHHHHhcc
Q 009250          239 ------DPHWWRTMLYIASLPGFILALGMQF  263 (539)
Q Consensus       239 ------~~~~wr~~f~~~~~~~~~~~~~~~~  263 (539)
                            ..+ |+..|++.++..++..+..++
T Consensus       418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        418 PIFGYTLTG-WAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ccccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence                  456 999999887777776555543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.38  E-value=5.6e-12  Score=123.79  Aligned_cols=169  Identities=21%  Similarity=0.156  Sum_probs=120.4

Q ss_pred             HHHHHHHhhhhhcccccchhHHHH-HHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchH--HHH------HH
Q 009250           90 LIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR--TFQ------ID  160 (539)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~l~------~~  160 (539)
                      ....+..++............|.+ .+++|.  ++.+.+++.+...++..++.++.|+++||+|||+  ...      .+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGL--SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc--cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            333444444444444555556654 456787  7888899999999999999999999999999996  111      11


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc
Q 009250          161 TIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (539)
Q Consensus       161 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~  240 (539)
                      .++..+........++.+..+...++.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~  374 (399)
T TIGR00893       296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT  374 (399)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence            11111112222222344444444555555555 78999999999999999999999999999999999999999998876


Q ss_pred             chhHHHHHhhHHHHHHHHHHh
Q 009250          241 HWWRTMLYIASLPGFILALGM  261 (539)
Q Consensus       241 ~~wr~~f~~~~~~~~~~~~~~  261 (539)
                      +.|+..|++.++..++..+..
T Consensus       375 g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       375 GSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             CchhHHHHHHHHHHHHHHHHH
Confidence            659999988888777665544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.37  E-value=2.7e-12  Score=125.95  Aligned_cols=158  Identities=17%  Similarity=0.144  Sum_probs=120.8

Q ss_pred             HhhhhhcccccchhHHHHH-HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH--HHHH
Q 009250           96 NFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA--IISA  172 (539)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~  172 (539)
                      .++............|.+. +++|.  ++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..  +...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGL--SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444445566555 66787  77788999999999999999999999999999998876555544433  2222


Q ss_pred             h--hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhh-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009250          173 Q--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (539)
Q Consensus       173 ~--a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~  249 (539)
                      +  .++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++. +.+..+|..++|.+++.+.++.+.|++.++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            2  256777778889999999999999999999999999999999984 5667789999999999998876658877776


Q ss_pred             hHHHHH
Q 009250          250 ASLPGF  255 (539)
Q Consensus       250 ~~~~~~  255 (539)
                      .++..+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            665444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.37  E-value=7.6e-12  Score=122.40  Aligned_cols=166  Identities=11%  Similarity=0.019  Sum_probs=134.4

Q ss_pred             hhhhhcccccchhHHHHH-HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh
Q 009250           97 FLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (539)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~  175 (539)
                      ++.......+....|.+. +++|+  +..+.+++.+.+.++..++.++.|+++||+|||+++.....+..+...+....+
T Consensus       215 ~~~~~~~~~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~  292 (394)
T PRK03699        215 LLYILAQLTFISWVPEYAQKKFGM--SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC--ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC
Confidence            333333333444566555 66788  888889999999999999999999999999999999988888777777777778


Q ss_pred             cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009250          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (539)
Q Consensus       176 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  255 (539)
                      +.+.+.+..++.|++.+..++...++..|..++ +++...+.......+|..++|.+.+++.+..+ |+..+++.++..+
T Consensus       293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~  370 (394)
T PRK03699        293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYA  370 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHH
Confidence            887888888999998888888888888887764 46778888888899999999999999998888 9999998888877


Q ss_pred             HHHHHhccccc
Q 009250          256 ILALGMQFTVE  266 (539)
Q Consensus       256 ~~~~~~~~~~~  266 (539)
                      +..+.....++
T Consensus       371 ~~~~~~~~~~~  381 (394)
T PRK03699        371 VVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHH
Confidence            77665555543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.35  E-value=1.4e-11  Score=121.00  Aligned_cols=179  Identities=12%  Similarity=0.034  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHH
Q 009250          326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLG  405 (539)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~  405 (539)
                      ...+...+.+...+.......+..|.+.++.+.+.. ..+...+...+...++    .+..|++.||+|||+.+..+.++
T Consensus         8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~-~~g~~~s~~~~~~~~~----~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSAT-MFGLAATLFYAAYVIC----GIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHH-HHHHHHHHHHHHHHHH----HhhHHHHHHHhChHHHHHHHHHH
Confidence            334444444444444455566667777777777654 5556666555555444    89999999999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          406 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      ..++.++..+..         +...+.. .-+..+.+.+ ..+....++.|.+|+++|+++.|+.+....+|..+++.+.
T Consensus        83 ~~~~~~~~~~~~---------~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  152 (412)
T TIGR02332        83 WGIASTATMFAT---------GPESLYL-LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS  152 (412)
T ss_pred             HHHHHHHHHHhc---------CHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887776622         1222222 2222233322 3455567789999999999999999999999999999999


Q ss_pred             HHHHH------HhCcchhhHHHHHHHHHHHHhhheeeeCCC
Q 009250          485 LDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETK  519 (539)
Q Consensus       485 ~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (539)
                      +.+.+      ..||+..|.+.++..++..++.+++++|++
T Consensus       153 ~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       153 GYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             HHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            98875      358999999888777776666666777765

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.35  E-value=3.5e-12  Score=129.09  Aligned_cols=147  Identities=20%  Similarity=0.091  Sum_probs=116.1

Q ss_pred             cchhHHHHH-HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--hcHHHHHH
Q 009250          106 MNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLW  182 (539)
Q Consensus       106 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~  182 (539)
                      ....+|.+. +++|.  +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++....  .+.+.+.+
T Consensus       294 ~~~~lp~~l~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (496)
T PRK03893        294 IQALLPTYLKTDLGY--DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL  371 (496)
T ss_pred             HHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            345567666 58888  88889999999999999999999999999999999998887777666544433  33444445


Q ss_pred             HHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009250          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (539)
Q Consensus       183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  255 (539)
                      ..++.|.......+....++.|.+|+++|++++++......+|..+||.+++.+.+..+ |+..+...+....
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~  443 (496)
T PRK03893        372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSLT  443 (496)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHH
Confidence            55555544444556677889999999999999999999999999999999999999888 9888766554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.35  E-value=8.7e-12  Score=121.44  Aligned_cols=151  Identities=14%  Similarity=0.156  Sum_probs=125.3

Q ss_pred             hhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q 009250          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLV  187 (539)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  187 (539)
                      ..+|.+.++.|.  +..+.+++.+.+.++..+++++.|++.||+|+|+++..+..+..++.+...  + ........++.
T Consensus       221 ~~lp~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGM--SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence            346777777777  777889999999999999999999999999999999988888877665543  2 23445677888


Q ss_pred             hhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009250          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT  264 (539)
Q Consensus       188 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  264 (539)
                      |++.....|...+.+.|..|+++++.+.+.+....++|..+||.+++++.++.+ |++.|++.+...++..+..+..
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHhc
Confidence            888888899999999999998888888888888999999999999999998888 9999999888777665554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.34  E-value=1.2e-11  Score=122.61  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=115.4

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      ......+.|.+.++.+.+.. ..+.+.....+...++    .++.|++.||+|||+.+.++.++..++.++.....    
T Consensus        39 ~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----  109 (434)
T PRK11663         39 RKSFNAAMPEMLADLGLSRS-DIGLLATLFYITYGVS----KFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS----  109 (434)
T ss_pred             hhhHHHhhHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh----
Confidence            33456677888888887754 5555555555555444    99999999999999999999888888877665521    


Q ss_pred             CccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGF  500 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  500 (539)
                            ....+....+..+...+ ..+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|.+.
T Consensus       110 ------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        110 ------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             ------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence                  12222222222222222 23556678889999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhheeeeC
Q 009250          501 GGVSLLSALFAYYFIVE  517 (539)
Q Consensus       501 ~~~~~~~~~~~~~~~~~  517 (539)
                      +++.++..++..+.++|
T Consensus       184 ~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        184 GIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            77666554444444444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=9.2e-12  Score=122.66  Aligned_cols=136  Identities=21%  Similarity=0.178  Sum_probs=113.5

Q ss_pred             HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH-HHHhhhcHHHHHHHHHHhhhc
Q 009250          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI-ISAQAHSLDEMLWGRFLVGLG  190 (539)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~a~~~~~l~~~r~l~G~~  190 (539)
                      .+.+++|.  +..+.+++.+.+.++..++.++.|++.||+|||+.+..+.++.++..+ .....++.+.+.+..++.|++
T Consensus       264 ~~~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (405)
T TIGR00891       264 YLKADLGL--SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQML  341 (405)
T ss_pred             HHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            44567788  888889999999999999999999999999999999888776644333 334456677777777888887


Q ss_pred             hhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009250          191 IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (539)
Q Consensus       191 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~  249 (539)
                      .+...+...+++.|.+|+++|++++|+.+....+|..++|++++.+.+..+.|+..+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            77778888899999999999999999999999999999999999999877657666654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.34  E-value=8.1e-12  Score=115.08  Aligned_cols=163  Identities=15%  Similarity=0.106  Sum_probs=127.7

Q ss_pred             hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250          341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP  420 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  420 (539)
                      .-..+..-.|.+.++.+.+.. +.+.+.+...+.-.++    .++.|.++||.+.|..+..++++.++..+++++     
T Consensus        44 ~RknF~~a~p~l~e~~~lsk~-~lG~i~s~f~i~YG~s----Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gf-----  113 (448)
T COG2271          44 TRKNFNLAMPALIEDGGLSKT-QLGILGSAFSITYGVS----KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF-----  113 (448)
T ss_pred             HHHhHhhccHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHhhhhcccCCCceeehHHHHHHHHHHHHHhh-----
Confidence            344556667888888877655 5555555444444333    999999999999999999999999999999988     


Q ss_pred             CCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHH--HHHHHHhCcchhh
Q 009250          421 LDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF--LDLVETFGVAPVY  497 (539)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--~~l~~~~g~~~~~  497 (539)
                           .....+..++...-++.-+. .|.+...+..-+|+++||+..++.|+..++|+++.|.+.  +.+.++.+|+..|
T Consensus       114 -----s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f  188 (448)
T COG2271         114 -----SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF  188 (448)
T ss_pred             -----hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence                 33445555555554544444 466677788999999999999999999999999999999  8888888999999


Q ss_pred             HHHHHHHHHHHHhhheeeeCC
Q 009250          498 AGFGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~  518 (539)
                      ++-++++++..++.++..+++
T Consensus       189 ~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         189 YFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            999999999888877776554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.34  E-value=8.5e-12  Score=123.17  Aligned_cols=158  Identities=15%  Similarity=0.047  Sum_probs=134.5

Q ss_pred             chhHHHHHHH-hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 009250          107 NGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF  185 (539)
Q Consensus       107 ~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~  185 (539)
                      ....|.+.++ +|.  ++.+.|++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.+
T Consensus       243 ~~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQM--GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCC--ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            3455666666 888  7788899999999999999999999999988888888888888888888888898888888999


Q ss_pred             HhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH-hccc
Q 009250          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG-MQFT  264 (539)
Q Consensus       186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~  264 (539)
                      +.|++.+...+...+++.|..|+++||++++++.....+|..+|+.+.+.+.+..+ ++..+++.+...++..++ ....
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence            99999988888888999999999999999999999999999999999999998877 888888777665555443 3445


Q ss_pred             ccc
Q 009250          265 VES  267 (539)
Q Consensus       265 ~~~  267 (539)
                      ++.
T Consensus       400 ~~~  402 (417)
T PRK10489        400 GEL  402 (417)
T ss_pred             ccc
Confidence            554

>PRK03545 putative arabinose transporter; Provisional

Probab=99.33  E-value=2.2e-11  Score=119.00  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=122.6

Q ss_pred             HHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH-HHHhhhcHHHHHHHHHHhh
Q 009250          110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI-ISAQAHSLDEMLWGRFLVG  188 (539)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~a~~~~~l~~~r~l~G  188 (539)
                      .|.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||+++ .+..+..++.. +....++.+.++++.++.|
T Consensus       229 ~~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGL--SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCC--CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            3445566787  777889999999999999999999999999988754 44444444443 3455678888888999999


Q ss_pred             hchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009250          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT  264 (539)
Q Consensus       189 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  264 (539)
                      ++.+...+...+.+.+..| ++|++++++++....+|..+|+++++.+.++.+ ++..|++.+++.++..+...+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHH
Confidence            9988777878888888876 578999999999999999999999999999998 9999999998888776665443

>TIGR00895 2A0115 benzoate transport

Probab=99.33  E-value=1.6e-11  Score=120.71  Aligned_cols=163  Identities=21%  Similarity=0.250  Sum_probs=117.1

Q ss_pred             hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250          341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP  420 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  420 (539)
                      ......++.|.+.++.+.+.. ..+.+.....+...++    .++.|+++||+|||+.+..+.++..++.+++...    
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----  102 (398)
T TIGR00895        32 DLAAMGFAAPAISAEWGLDPV-QLGFLFSAGLIGMAFG----ALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA----  102 (398)
T ss_pred             HHHHHHhhHHHHhhccCCCHH-HHHHHHHHHHHHHHHH----HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----
Confidence            345566677888888777654 4455555554444333    8999999999999999998888877777666542    


Q ss_pred             CCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Q 009250          421 LDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG  499 (539)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  499 (539)
                           . .........+..+++.+ ..+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..||+..+.+
T Consensus       103 -----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  176 (398)
T TIGR00895       103 -----T-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV  176 (398)
T ss_pred             -----c-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence                 1 12222222233333333 3466678889999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhhheeeeCC
Q 009250          500 FGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~  518 (539)
                      .+++.++..++.+.+.++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       177 GGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             hhhHHHHHHHHHHHhCCCC
Confidence            7666666655555556654

>TIGR00897 2A0118 polyol permease family

Probab=99.32  E-value=2.8e-11  Score=118.74  Aligned_cols=163  Identities=15%  Similarity=0.076  Sum_probs=124.2

Q ss_pred             hhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHH-HHHHHHHHHHHHHHh--
Q 009250           97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-IDTIPLILGAIISAQ--  173 (539)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~--  173 (539)
                      ++............|.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||+.+. .+.+..+++.+...+  
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~  309 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGF--STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIP  309 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444566777788888  7777889999999999999999999999999988764 333444444333332  


Q ss_pred             ---hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh
Q 009250          174 ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (539)
Q Consensus       174 ---a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~  250 (539)
                         .++.+.+++..++.|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+++.+.+..+ |+..|++.
T Consensus       310 ~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~  386 (402)
T TIGR00897       310 QHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIF  386 (402)
T ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHH
Confidence               24677777889999998887655 3456677655 579999999999999999999999999999888 99999998


Q ss_pred             HHHHHHHHHHhccc
Q 009250          251 SLPGFILALGMQFT  264 (539)
Q Consensus       251 ~~~~~~~~~~~~~~  264 (539)
                      ++..++..++..|+
T Consensus       387 a~~~~i~~~~~~~~  400 (402)
T TIGR00897       387 AALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88877776665553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.32  E-value=2.1e-11  Score=118.72  Aligned_cols=150  Identities=13%  Similarity=0.018  Sum_probs=125.0

Q ss_pred             cchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 009250          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF  185 (539)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~  185 (539)
                      .....|.+.+|.|.  ++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGY--SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33444556677888  7788899999999999999999999999999999999999999998888889999999999999


Q ss_pred             HhhhchhhhhhhHHHHHHhcCCCCccccchhhhH-HHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009250          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG  260 (539)
Q Consensus       186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~  260 (539)
                      +.|++.+...+....++.+. +++++++..++++ ....+|..+|+.++|.+.+..+ + ..|+..+++.++.+++
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            99999999999999998887 5556788888875 5567888999999999999887 6 4666666665554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=3.9e-11  Score=112.14  Aligned_cols=161  Identities=18%  Similarity=0.179  Sum_probs=129.3

Q ss_pred             hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250          341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP  420 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  420 (539)
                      .-....-.+|.+.++.+.+.+ .++..+++..+...++    .++...+.||+.||++++..+.+..++.++..+.+   
T Consensus        28 tEfv~~gLLp~iA~dl~vs~~-~aG~lis~yAl~~ai~----ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp---   99 (394)
T COG2814          28 TEFVPVGLLPPIAADLGVSEG-AAGQLITAYALGVALG----APLLALLTGRLERRRLLLGLLALFIVSNLLSALAP---   99 (394)
T ss_pred             HHHHHHhchHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc---
Confidence            344566678889999998876 5566556555555444    99999999999999999999999999999888843   


Q ss_pred             CCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Q 009250          421 LDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG  499 (539)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  499 (539)
                             +...+...=+..+...+ ++++..+...++.|+++|+++.++......+...+|.++..++-|.+||+.+|++
T Consensus       100 -------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~  172 (394)
T COG2814         100 -------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA  172 (394)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence                   22333333333333322 3566778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhheeee
Q 009250          500 FGGVSLLSALFAYYFIV  516 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~  516 (539)
                      .+++.++..+..+..+|
T Consensus       173 ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         173 IAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999998888888

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.31  E-value=2.4e-11  Score=118.79  Aligned_cols=164  Identities=14%  Similarity=0.145  Sum_probs=118.0

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      ........|.+.++.+.+.. ..+...+...+...++    .++.|++.||+|||+.+..+.++..++.+......    
T Consensus        21 ~~~~~~~~p~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----   91 (385)
T TIGR00710        21 IDMYLPAFPEIAADLSTPAS-IVQMTLTLYLLGFAAG----QLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN----   91 (385)
T ss_pred             HHHhcccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----
Confidence            33444456777788887655 5555555555554333    99999999999999999998888887777765521    


Q ss_pred             CccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGF  500 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  500 (539)
                            .........+..+.+.+ ..+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..+++.
T Consensus        92 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        92 ------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             ------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence                  22222222233333332 23556678889999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhheeeeCCCC
Q 009250          501 GGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~  520 (539)
                      +++.++..++.++..||+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       166 SLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHHhCCCCCC
Confidence            87777776666555665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.31  E-value=4.7e-11  Score=120.39  Aligned_cols=159  Identities=16%  Similarity=0.044  Sum_probs=117.0

Q ss_pred             cchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--cH-H-HHH
Q 009250          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SL-D-EML  181 (539)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~-~-~l~  181 (539)
                      .....|.+.+++|.  +....++......+...++.++.|+++||+|||++++.+.++.+++.++.+...  +. + ...
T Consensus       290 ~~~~~p~i~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~  367 (479)
T PRK10077        290 VLYYAPEIFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL  367 (479)
T ss_pred             HHHHHHHHHHHcCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence            33455888888888  555556777778888899999999999999999999999999999888776432  21 1 222


Q ss_pred             HHHHHhhhchhh-hhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcC------CCCCCcchhHHHHHhhHHHH
Q 009250          182 WGRFLVGLGIGV-NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI------PAEDDPHWWRTMLYIASLPG  254 (539)
Q Consensus       182 ~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~------~l~~~~~~wr~~f~~~~~~~  254 (539)
                      .+-++.+.+.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+      ++.+..+ |++.|++.++++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~  446 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHH
Confidence            334444444443 23677899999999999999999999999888888754443      4445566 888999888877


Q ss_pred             HHHHHHhcc-cccc
Q 009250          255 FILALGMQF-TVES  267 (539)
Q Consensus       255 ~~~~~~~~~-~~~~  267 (539)
                      ++.+++.++ .||+
T Consensus       447 ~~~~~~~~~~~~e~  460 (479)
T PRK10077        447 VLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHhccccC
Confidence            777665554 5554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.31  E-value=2.7e-11  Score=118.31  Aligned_cols=164  Identities=12%  Similarity=0.052  Sum_probs=127.0

Q ss_pred             hcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-cHHH
Q 009250          101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH-SLDE  179 (539)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~  179 (539)
                      ..........|.+.+++|.  +..+.|++.+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...
T Consensus       219 ~~~~~~~~~lp~~l~~~g~--s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  296 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGA--SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            3333444456666677888  788889999999999999999999999999999999998888877776655333 3222


Q ss_pred             HHHHHHHhhhchhhhhhhHHHHHHhcCC-CCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHH
Q 009250          180 MLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (539)
Q Consensus       180 l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~  258 (539)
                      +  .-++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..|+|...|++.++..++..
T Consensus       297 ~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (393)
T PRK09705        297 L--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM  374 (393)
T ss_pred             H--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            2  2346688888888887777777775 577999999999999999999999999999887668888888877777665


Q ss_pred             HHh-cccccch
Q 009250          259 LGM-QFTVESP  268 (539)
Q Consensus       259 ~~~-~~~~~~p  268 (539)
                      +.. .+.||++
T Consensus       375 ~~~~~~~~~~~  385 (393)
T PRK09705        375 IITLRFAPARF  385 (393)
T ss_pred             HHHHHhccccc
Confidence            554 4455553

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.30  E-value=1.5e-11  Score=124.13  Aligned_cols=178  Identities=13%  Similarity=-0.004  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  166 (539)
                      ..+....+..+.............|.+.+++|.  +..+.++......++..++.++.|+++||+|||+.+..+.++.++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  361 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV--STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI  361 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            334444444444444445555667888888888  667778899999999999999999999999999999999888888


Q ss_pred             HHHHHHhh-----h------cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCC
Q 009250          167 GAIISAQA-----H------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (539)
Q Consensus       167 ~~~~~~~a-----~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  235 (539)
                      +.++.++.     +      +...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777621     1      233333333333333333456667788999999999999999999999999999999998


Q ss_pred             CCCCcchhHHHHHhhHHHHHHHHHHhcc-cccc
Q 009250          236 AEDDPHWWRTMLYIASLPGFILALGMQF-TVES  267 (539)
Q Consensus       236 l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~  267 (539)
                      +.+..+ |++.|++.++++++..++.++ .||+
T Consensus       442 ~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       442 MLESIG-VGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HHHhcC-ccceehhHHHHHHHHHHHHheecccC
Confidence            888777 999999988888777766544 4554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.30  E-value=4.8e-11  Score=116.44  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=112.0

Q ss_pred             HhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccch
Q 009250          347 YFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS  426 (539)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (539)
                      ...|.+.++.+.+.. ..+...+...+...++    .++.|++.||+|||+.+..+.++.+++.++.....        +
T Consensus        41 ~~l~~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--------~  107 (394)
T PRK10213         41 SLLTPMAQDLGISEG-VAGQSVTVTAFVAMFA----SLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN--------S  107 (394)
T ss_pred             hhHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC--------h
Confidence            345667788877655 4455444444444333    99999999999999999999999888777665521        2


Q ss_pred             hhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Q 009250          427 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLL  506 (539)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  506 (539)
                      .+..+..-.+.+.+.+ ...+....++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..||+..|++.+++.++
T Consensus       108 ~~~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~  186 (394)
T PRK10213        108 FSLLLIGRACLGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL  186 (394)
T ss_pred             HHHHHHHHHHHHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            2222222222222222 234566677889999999999999999999999999999999999999999999888776665


Q ss_pred             HHHhhheeeeCC
Q 009250          507 SALFAYYFIVET  518 (539)
Q Consensus       507 ~~~~~~~~~~~~  518 (539)
                      ..++.....||.
T Consensus       187 ~~l~~~~~~p~~  198 (394)
T PRK10213        187 CIFWIIKSLPSL  198 (394)
T ss_pred             HHHHHHHHCCCC
Confidence            554443334543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.29  E-value=1.3e-10  Score=116.16  Aligned_cols=159  Identities=8%  Similarity=-0.045  Sum_probs=103.5

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      ......+.|.+.++.+.+.. ..+.+.....+...++    .++.|+++||+|||+.+..+.++..++.++..+..    
T Consensus        52 ~~~~~~~~~~l~~~~gls~~-~~g~~~~~~~~~~~~~----~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----  122 (476)
T PLN00028         52 TFAAAPLLPIIRDNLNLTKS-DIGNAGIASVSGSIFS----RLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS----  122 (476)
T ss_pred             HHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc----
Confidence            33445566778888888755 3344444443333222    89999999999999998888877777766655521    


Q ss_pred             CccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH---------HhC
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE---------TFG  492 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~---------~~g  492 (539)
                          +....++..  +..+++.+.......++.|.+|+++||.+.|+.+...++|+.+++.+.+.+..         ..|
T Consensus       123 ----s~~~l~~~r--~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g  196 (476)
T PLN00028        123 ----SATGFIAVR--FFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA  196 (476)
T ss_pred             ----CHHHHHHHH--HHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence                111122222  22222222222233567899999999999999998888888888777665432         147


Q ss_pred             cchhhHHHHHHHHHHHHhhheee
Q 009250          493 VAPVYAGFGGVSLLSALFAYYFI  515 (539)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~  515 (539)
                      |+..|++.+++.++..++.+++.
T Consensus       197 Wr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        197 WRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999988887777666554443

>PRK09952 shikimate transporter; Provisional

Probab=99.27  E-value=4.6e-11  Score=118.34  Aligned_cols=154  Identities=15%  Similarity=0.080  Sum_probs=114.1

Q ss_pred             HHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh---h-hcHHHHHHHHHHh
Q 009250          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ---A-HSLDEMLWGRFLV  187 (539)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a-~~~~~l~~~r~l~  187 (539)
                      .+.+++|.  +......+.....+...++.++.|+++||+|||+++..+.++..++.+.+..   . ++.+.+++..++.
T Consensus       276 y~~~~~g~--s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  353 (438)
T PRK09952        276 YSTQNLGL--PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA  353 (438)
T ss_pred             HHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            44567787  5554455555666677788899999999999999998887766655443332   2 2344445566777


Q ss_pred             hhchhhhhhhHHHHHHhcCCCCccccchhhhH-HHHHHHHHHHHHhcCCCCCCc-chhHHHHHhhHHHHHHHHHHhcccc
Q 009250          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQFTV  265 (539)
Q Consensus       188 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~  265 (539)
                      |++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+.. ++|+..+...++..++..+..+.++
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~  433 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK  433 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            88888888888999999999999998888854 445589999999999887643 2388888888877777776666665


Q ss_pred             cc
Q 009250          266 ES  267 (539)
Q Consensus       266 ~~  267 (539)
                      |+
T Consensus       434 ~~  435 (438)
T PRK09952        434 DN  435 (438)
T ss_pred             cc
Confidence            54

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.26  E-value=2.6e-11  Score=120.49  Aligned_cols=158  Identities=22%  Similarity=0.174  Sum_probs=138.8

Q ss_pred             hcccccchhHHHHH-HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHH
Q 009250          101 YHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE  179 (539)
Q Consensus       101 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~  179 (539)
                      +....+...+|.+. +++|.  ++...|++.+++.+|..++.++.+++.+|+++++++..+.++++++.+..+++++.+.
T Consensus       232 l~~~a~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~  309 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWL  309 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHH
Confidence            33333445677665 45777  8888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHH
Q 009250          180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (539)
Q Consensus       180 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  259 (539)
                      .+++-++.|++.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+.+..+ -+..+.+.++..++..+
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~  388 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSAL  388 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888 88888887766555544


Q ss_pred             Hh
Q 009250          260 GM  261 (539)
Q Consensus       260 ~~  261 (539)
                      +.
T Consensus       389 ~~  390 (524)
T PF05977_consen  389 IA  390 (524)
T ss_pred             HH
Confidence            43

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.26  E-value=4.2e-11  Score=116.77  Aligned_cols=162  Identities=17%  Similarity=0.202  Sum_probs=116.4

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      ...+....|.+.++.+.+.. ..+.+.++..+...++    .++.|+++||+|||+.+..+.++..++.+++....    
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----   81 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKT-DLGLLLSSFSIAYGIS----KFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST----   81 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHh-HHHHHHHHHHHHHHhh----hhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh----
Confidence            44455566777777777654 5555555555555444    99999999999999999999988888877776632    


Q ss_pred             CccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHH-HHHHHHHHHhCcchhhHH
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG-LFFLDLVETFGVAPVYAG  499 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~~~l~~~~g~~~~~~~  499 (539)
                            .........+..+.+.+ ..+...+++.|.+|+++|+.+.++.+....+|..++| .+.+.+.+..+|+..|++
T Consensus        82 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T TIGR00881        82 ------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV  155 (379)
T ss_pred             ------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence                  22222223333333333 3566778889999999999999999999999999999 466666677889998888


Q ss_pred             HHHHHHHHHHhhheeeeCC
Q 009250          500 FGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~  518 (539)
                      .+++.++..++.+++.++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       156 PGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             HHHHHHHHHHHHheeeCCC
Confidence            8877777666666666654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.25  E-value=6.9e-11  Score=115.74  Aligned_cols=172  Identities=17%  Similarity=0.189  Sum_probs=119.6

Q ss_pred             HHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHH
Q 009250          333 LFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLL  412 (539)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  412 (539)
                      ...+....+........|.+.++.+.+.. ..+...+...+...++    .++.|+++||+|||+.+..+.++..++..+
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNASEA-QLHIAFSVYLAGMAAA----MLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            33333333455555677888888887765 4444455544444333    899999999999999999888888777776


Q ss_pred             HHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009250          413 VVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF  491 (539)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~  491 (539)
                      +....        +.+....  ..+..+.+.+. .+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus        85 ~~~~~--------~~~~~~~--~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~  154 (392)
T PRK10473         85 CSLAE--------TSSLFLA--GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF  154 (392)
T ss_pred             HHHhC--------cHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            65521        1122222  22222333222 3456678889999999999999999999999999999999888888


Q ss_pred             CcchhhHHHHHHHHHHHHhhheeeeCCC
Q 009250          492 GVAPVYAGFGGVSLLSALFAYYFIVETK  519 (539)
Q Consensus       492 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (539)
                      ||+..+++.+++.++..++.....+|++
T Consensus       155 g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        155 PWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999898888777777666555566554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.25  E-value=2.5e-10  Score=112.07  Aligned_cols=156  Identities=13%  Similarity=0.098  Sum_probs=106.9

Q ss_pred             hhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc-CCchhhHhhHHHHHHHHHHHHHHhc
Q 009250          341 GINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATS  418 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~  418 (539)
                      .++.+..+++.++.+ .+.+.. ....+.+.......++    .+++|+++||+ |||+.+.++.++..++.+++.... 
T Consensus        24 s~Yg~~~~L~~yL~~~lgls~~-~a~~i~~~~~~~~~l~----~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-   97 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYDDN-HAYELFSAYCSLVYVT----PILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-   97 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-
Confidence            455566667777654 466554 4555555555544333    88999999999 999999999998888876554311 


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcch
Q 009250          419 LPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP  495 (539)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~  495 (539)
                            .......+...+..  .+.+. .+...+++.|.+|++  .|+++.++.+...++|++++|.+.+++.+..||+.
T Consensus        98 ------~~~~~~~l~l~li~--iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~  169 (493)
T PRK15462         98 ------IHPSFLYLSLAIIV--CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM  169 (493)
T ss_pred             ------cchhHHHHHHHHHH--HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence                  01111222222222  22232 355567889999875  69999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHh
Q 009250          496 VYAGFGGVSLLSALF  510 (539)
Q Consensus       496 ~~~~~~~~~~~~~~~  510 (539)
                      .|.+.++..+++.+.
T Consensus       170 ~F~iaaigm~l~li~  184 (493)
T PRK15462        170 GFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998866554444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.24  E-value=9.5e-11  Score=114.83  Aligned_cols=139  Identities=13%  Similarity=0.061  Sum_probs=121.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHH
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~  201 (539)
                      +....|++.++..+...++.++.|++.||+|+|+.+.++.++.+++..+...++|.+.+++.+++.|++..........+
T Consensus       252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  331 (396)
T TIGR00882       252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY  331 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888999999999999999999999999999999999999988888888999999999999999988777777778


Q ss_pred             HHhcCCCCccccchhh-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009250          202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (539)
Q Consensus       202 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  261 (539)
                      ..+..+++.++...+. ++....+|..+++.+++++.+..| |+..|.+.+++.++..+..
T Consensus       332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence            8888888888887766 678899999999999999999888 9999999888877766544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.24  E-value=9.6e-11  Score=112.63  Aligned_cols=163  Identities=12%  Similarity=-0.002  Sum_probs=110.1

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      ...+....|.+.++.+.+.. +.+.+.+...+...++    .+..|+++||+|||+++.........+.. ....     
T Consensus         7 ~~~~~~~lp~i~~~~~~s~~-~~g~~~s~~~~g~~i~----~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~-----   75 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDVSKE-ELGLLAITYPAAFLAL----TIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD-----   75 (368)
T ss_pred             HHHHHhhHHHHHHHhCcCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH-----
Confidence            33455667888888888755 5555555555544333    89999999999998876544443333322 1111     


Q ss_pred             CccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG  501 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  501 (539)
                          ......+...-+..+.+.+..........|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+
T Consensus        76 ----~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~  151 (368)
T TIGR00903        76 ----PFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA  151 (368)
T ss_pred             ----hccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence                0112222222223333333333334555788999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhhheeeeCCC
Q 009250          502 GVSLLSALFAYYFIVETK  519 (539)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~  519 (539)
                      ++.++..++.++.+||.+
T Consensus       152 ~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       152 AVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            888777777667777643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.23  E-value=2.3e-10  Score=111.94  Aligned_cols=156  Identities=13%  Similarity=0.139  Sum_probs=109.9

Q ss_pred             HHhHHH-HHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCcc
Q 009250          346 LYFSSL-TFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED  424 (539)
Q Consensus       346 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (539)
                      ..+.+. +.++.+.+.. ..+...+...+...+.    .++.|+++||+|||+.+..+..+..++.+.+...        
T Consensus        30 ~~~~~~~~~~~~g~s~~-~~gl~~~~~~l~~~~~----~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--------   96 (400)
T PRK11646         30 FPLISIRFVDQLGWAAV-MVGIALGLRQFIQQGL----GIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--------   96 (400)
T ss_pred             HHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHHHH----HhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--------
Confidence            334444 4455666544 6666666655555333    8899999999999999999999888888777652        


Q ss_pred             chhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Q 009250          425 FSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGV  503 (539)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~  503 (539)
                       ++.+.+ .......+.+.+ ..+...+++.+..|+++|+++.|+.+...++|..++|.+.+.+. ..||+..|++.+.+
T Consensus        97 -~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~  173 (400)
T PRK11646         97 -HEPWLL-WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL  173 (400)
T ss_pred             -ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence             122222 222222232222 34555677889999999999999999999999999999999988 67999989888777


Q ss_pred             HHHHHHhhheeeeC
Q 009250          504 SLLSALFAYYFIVE  517 (539)
Q Consensus       504 ~~~~~~~~~~~~~~  517 (539)
                      .++..++..+..++
T Consensus       174 ~~~~~i~~~~~~~~  187 (400)
T PRK11646        174 FVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHhCCc
Confidence            66665554444554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.22  E-value=4.6e-11  Score=120.69  Aligned_cols=166  Identities=15%  Similarity=0.112  Sum_probs=118.9

Q ss_pred             hhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHh
Q 009250          338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT  417 (539)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  417 (539)
                      ............|.+.++.+.+.. ..+.+.....+...++    .++.|++.||+|||+.+..+.++..++.++.... 
T Consensus        14 ~~~~~~~~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-   87 (485)
T TIGR00711        14 AVLDSTIVNVAIPTIAGDLGSSLS-QVQWVITSYMLANAIS----IPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-   87 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChh-hhhHHHHHHHHHHHHH----HHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-
Confidence            333455566778888888887644 3344444444444333    9999999999999999999988888877766542 


Q ss_pred             cCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Q 009250          418 SLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV  496 (539)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  496 (539)
                              + ....+....+..+++.+ ..+....++.|.+|+++|+++.++......+|..++|.+.+.+.++.||++.
T Consensus        88 --------~-~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~  158 (485)
T TIGR00711        88 --------P-NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWI  158 (485)
T ss_pred             --------C-CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceeh
Confidence                    1 22222222233333333 3466678889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhheeeeCC
Q 009250          497 YAGFGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~  518 (539)
                      |++.+.+.++..++..+..++.
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       159 FLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             hhhhhHHHHHHHHHHHHHcCCc
Confidence            9888777766666555555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.22  E-value=6e-10  Score=98.55  Aligned_cols=176  Identities=15%  Similarity=0.081  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHH
Q 009250           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (539)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  165 (539)
                      |..+....+.....+ ....++..-|.+++.+|+  |+.|...+.++..+|..+ +++.|.+.|++|++.++.+|.+...
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~--sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGY--SQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCC--CHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence            444444444444433 445566677899999999  999999999999999886 5889999999999999999999999


Q ss_pred             HHHHHHHhh-------hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC
Q 009250          166 LGAIISAQA-------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (539)
Q Consensus       166 ~~~~~~~~a-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~  238 (539)
                      +|..+...+       .++|.+.+..++.|.+.+....+......+.||+ +||.+.|+.-...+++..+-..+...+..
T Consensus        78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            998887654       4788898889999998888778887778889985 69999999999999988777666555554


Q ss_pred             CcchhHHHHHhhHHHHHHHHHHhcccccc
Q 009250          239 DPHWWRTMLYIASLPGFILALGMQFTVES  267 (539)
Q Consensus       239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~  267 (539)
                      ... -+..+.......++.++..+++++.
T Consensus       157 ~~~-~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  157 DDP-SSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             CCh-HHHHHHHHHHHHHHHHHHhhheecc
Confidence            443 4555555555555555555555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.22  E-value=1.4e-10  Score=113.04  Aligned_cols=162  Identities=14%  Similarity=0.076  Sum_probs=115.2

Q ss_pred             HHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCC
Q 009250          343 NGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD  422 (539)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (539)
                      .......|.+.++.+.+.. ..+...+...+...++    .++.|++.||+|||+.+..+..+.+++.++.....     
T Consensus        20 ~~~~~~l~~~~~~~g~s~~-~~g~~~s~~~~~~~~~----~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~-----   89 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIP-AAGHMISYYALGVVVG----APIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS-----   89 (382)
T ss_pred             HHHHhChHHHHHHcCCCHH-HHhHHHHHHHHHHHHH----HHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            3445567778888877654 4455555555544333    99999999999999999999998888887766521     


Q ss_pred             ccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Q 009250          423 EDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG  501 (539)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  501 (539)
                         +  ...+...-+..+.+.+. .+.....+.|.+|+++|+.+.++......++..++|.+.+.+.+..||+..|.+.+
T Consensus        90 ---~--~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091         90 ---S--YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             ---c--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence               1  22222222233333222 34445667788998889999999999999999999999999999899999999888


Q ss_pred             HHHHHHHHhhheeeeCCC
Q 009250          502 GVSLLSALFAYYFIVETK  519 (539)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~  519 (539)
                      ++.++..+..+...|+.+
T Consensus       165 ~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        165 VFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHhCCCCC
Confidence            877766655555566643

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=8.9e-11  Score=116.12  Aligned_cols=176  Identities=19%  Similarity=0.171  Sum_probs=159.3

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhc--chHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG--CRRTFQIDTIPLI  165 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~  165 (539)
                      .++.+.++..+..+...+....+|.+.++.+.  ++.+++.+.++..+...++.++.|+++|+..  ++.+..+++++.+
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~--~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g  376 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL--SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG  376 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence            46666777777777788888889999999998  8888899999999999999999999999988  5677778888899


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009250          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (539)
Q Consensus       166 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~  245 (539)
                      ++.+.++++++++.++..-.+.|++.|........++.|..+.++-..+.|+.....+++.++||++++.+.+..+.|..
T Consensus       377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            99999999999999999999999999988888888999999999999999999999999999999999999988887999


Q ss_pred             HHHhhHHHHHHHHHHhcccc
Q 009250          246 MLYIASLPGFILALGMQFTV  265 (539)
Q Consensus       246 ~f~~~~~~~~~~~~~~~~~~  265 (539)
                      .|+..++..++..++.++.+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999999888887777665

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.21  E-value=1.6e-10  Score=114.54  Aligned_cols=137  Identities=16%  Similarity=0.039  Sum_probs=103.3

Q ss_pred             chhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhc--HHHHHHHH
Q 009250          107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS--LDEMLWGR  184 (539)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--~~~l~~~r  184 (539)
                      ...+|.+.++.|.  ++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..++.+.....++  ...+.+..
T Consensus       251 ~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        251 FGLLPTYLAGEGF--DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            3456777777777  7778888999999999999999999999999999999888877766655544332  22222222


Q ss_pred             HHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009250          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM  246 (539)
Q Consensus       185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~  246 (539)
                      +..+.+..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            222222223345566788999999999999999999999999999999999988776 5543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.21  E-value=2.4e-10  Score=112.40  Aligned_cols=179  Identities=16%  Similarity=0.091  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHhhhhhcccccch-hHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcch--HHHHHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNG-PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIP  163 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~  163 (539)
                      +.+....++.++..-..+.+.. ....-.+++|+  +..+...+.-+..+...+|++++|++.||+|.|  +++..++++
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~--s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGM--STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL  358 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            3344445554544333333333 33455568999  888888888889999999999999999999999  999999988


Q ss_pred             HHHHHHHHHh--------hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCC
Q 009250          164 LILGAIISAQ--------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (539)
Q Consensus       164 ~~~~~~~~~~--------a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  235 (539)
                      +.+..+...+        .++-+.+.+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.
T Consensus       359 ~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  359 WIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777776666        67888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchhHHHHHhhHHHHHHHHHHhcccccc
Q 009250          236 AEDDPHWWRTMLYIASLPGFILALGMQFTVES  267 (539)
Q Consensus       236 l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~  267 (539)
                      +.+..+.-|+.++...++.++.+++.++++.+
T Consensus       439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  439 ITDATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            98887778999988888888887777666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.21  E-value=2.9e-11  Score=117.27  Aligned_cols=130  Identities=18%  Similarity=0.170  Sum_probs=116.9

Q ss_pred             hhHHHHHHH-hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhc-HHHHHHHHH
Q 009250          108 GPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS-LDEMLWGRF  185 (539)
Q Consensus       108 ~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-~~~l~~~r~  185 (539)
                      ...|.+.++ +|.  ++.+.+++.+.+.++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ ++.+++..+
T Consensus       232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGR--GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence            455666665 787  8888899999999999999999999999999999999988888888888888774 888889999


Q ss_pred             HhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      +.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+++.+.+.
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887654

>PRK10504 putative transporter; Provisional

Probab=99.21  E-value=2.3e-10  Score=114.98  Aligned_cols=165  Identities=13%  Similarity=0.018  Sum_probs=114.0

Q ss_pred             hhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHh
Q 009250          338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT  417 (539)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  417 (539)
                      ............|.+.++.+.+.. ..+.+.....+...++    .++.|+++||+|||+.+..+..+..++.+......
T Consensus        22 ~~~~~~~~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   96 (471)
T PRK10504         22 QSLDTTIVNTALPSMAQSLGESPL-HMHMVIVSYVLTVAVM----LPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG   96 (471)
T ss_pred             HHHhHHHHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC
Confidence            333445566678888888887765 3333334333333222    89999999999999999888777777666554411


Q ss_pred             cCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Q 009250          418 SLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV  496 (539)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  496 (539)
                              +.+..++.  ....+.+.+ ..+....++.|.+|+++|+++.|+.+...++|..++|.+.+.+.+..||++.
T Consensus        97 --------~~~~l~~~--~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~  166 (471)
T PRK10504         97 --------TLNELLLA--RVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWI  166 (471)
T ss_pred             --------CHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHH
Confidence                    11222222  222233222 3455667788999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhheeeeC
Q 009250          497 YAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      |.+...+..+..++.....++
T Consensus       167 f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        167 FLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            988877666666555444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.20  E-value=5.9e-10  Score=111.18  Aligned_cols=155  Identities=10%  Similarity=0.070  Sum_probs=110.6

Q ss_pred             hhHHHHHhHHHHHHH---cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh-cCCchhhHhhHHHHHHHHHHHHHH
Q 009250          341 GINGVLYFSSLTFQD---VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGA  416 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~  416 (539)
                      .++.+..+++.++++   .+.+.. ..+.+.+...+...++    .+++|+++|| +|||+.+..+.++..++.+++...
T Consensus        25 ~~~~~~~~L~~yl~~~~~lg~s~~-~ag~~~~~~~~~~~~~----~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~   99 (475)
T TIGR00924        25 SYYGMQGILAVYLVQQAGLGFSQE-QAFIIFGAYSALVYLL----TSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS   99 (475)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHHHHHH----HhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence            455566677777765   455543 5666666666555444    9999999999 899999999999988888777652


Q ss_pred             hcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009250          417 TSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRT---RGKIMGFSFSVHWVCNFLVGLFFLDLVETFG  492 (539)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g  492 (539)
                      .          ............+.+.+ ..+...+++.+.+|++.   |+++.++.+...++|.+++|.+.+.+.++.|
T Consensus       100 ~----------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924       100 I----------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             c----------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1          11122222223334333 34566677888887653   8889999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHh
Q 009250          493 VAPVYAGFGGVSLLSALF  510 (539)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~  510 (539)
                      |+..|.+.++..+++.+.
T Consensus       170 ~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999998877655554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.20  E-value=2.7e-10  Score=112.12  Aligned_cols=163  Identities=15%  Similarity=0.080  Sum_probs=112.3

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      ...+....+.+.++.+.+.. ..+.......+...++    .++.|+++||+|||+.+..+.....++.+......    
T Consensus        29 ~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----   99 (406)
T PRK15402         29 NDMIQPGMLAVVEDFNAGAE-WVPTSMTAYLAGGMFL----QWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ----   99 (406)
T ss_pred             hhhHhcchHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc----
Confidence            33344445667777777654 4444445544444333    89999999999999999988887777766665521    


Q ss_pred             CccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGF  500 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  500 (539)
                           +. .......+..+.+.+. .+.....+.|.+|++.++.+.++......++..++|.+.+.+.+..+|+..+++.
T Consensus       100 -----~~-~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        100 -----SI-EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             -----cH-HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence                 11 2222222222222222 3455677789999998999999998888899999999999999989999999888


Q ss_pred             HHHHHHHHHhhheeeeCCC
Q 009250          501 GGVSLLSALFAYYFIVETK  519 (539)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~  519 (539)
                      +++.++..+..+...||++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        174 AALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHHHHHhCCCCC
Confidence            8877777665555566553

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.20  E-value=2.9e-10  Score=114.54  Aligned_cols=175  Identities=13%  Similarity=-0.006  Sum_probs=118.7

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHH
Q 009250          328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLG  405 (539)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~  405 (539)
                      +....+..+...........-.|.+.++.+.+..  .+....+.+.....       .+..|+++||+|||+.+..+.++
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~-------~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGM-------VLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHH
Confidence            3333444444444555666678888888876543  22333333333333       88999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccc-cCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          406 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPEL-SSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      ..++.++.....        +.+..++.-.+.+.+.+ +..+.....+.+. .|+++|+++.|+......+|..++|.+.
T Consensus        81 ~~~~~~~~~~a~--------~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg  151 (495)
T PRK14995         81 FGLASLAAAFSP--------TASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG  151 (495)
T ss_pred             HHHHHHHHHHcC--------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888776621        22222222222332222 2334334444454 4678899999999999999999999999


Q ss_pred             HHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCC
Q 009250          485 LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       485 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (539)
                      +.+.++.||++.|++...+.++..++..+..|+.
T Consensus       152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999988877777666665556553

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.20  E-value=4.1e-10  Score=109.23  Aligned_cols=163  Identities=18%  Similarity=0.144  Sum_probs=106.3

Q ss_pred             hhHHHHHhHHH-HHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcC
Q 009250          341 GINGVLYFSSL-TFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL  419 (539)
Q Consensus       341 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  419 (539)
                      .......+.|. +.++.+.+.. ..+.+.++..+...++    .++.|+++||+|||+.+..+.++..++.+++....  
T Consensus        16 ~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~--   88 (366)
T TIGR00886        16 VWFAFSPLAVQMIKDDLGLSTA-QLGNLVAVPVLAGAVL----RIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV--   88 (366)
T ss_pred             HHHHhHHhhhHHHHHHhCCCHH-HhhHhhHHHHHHHHHH----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh--
Confidence            44455566674 5567777655 5555556555555444    99999999999999999999988888877776522  


Q ss_pred             CCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH---------
Q 009250          420 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET---------  490 (539)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~---------  490 (539)
                            .+...+. ...+..+.+.+..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+...         
T Consensus        89 ------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        89 ------QSYSVLL-LLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             ------hhHHHHH-HHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                  0222222 222222333333344557788999999999999999988888888888887776653         


Q ss_pred             -hCcchhh-HHHHHHHHHHHHhhheeeeC
Q 009250          491 -FGVAPVY-AGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       491 -~g~~~~~-~~~~~~~~~~~~~~~~~~~~  517 (539)
                       .+|++.+ ...+++..+..++.+...++
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhccc
Confidence             3788887 43344444444443344443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.19  E-value=3.4e-10  Score=110.94  Aligned_cols=160  Identities=16%  Similarity=0.085  Sum_probs=109.8

Q ss_pred             HHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCcc
Q 009250          345 VLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED  424 (539)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (539)
                      .....|.+.++.+.+.. ..+...+...+...++    .++.|+++||+|||+.+..+..+..++.+......       
T Consensus        27 ~~p~~~~i~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-------   94 (394)
T PRK11652         27 YVPAIADMARDLNVREG-AVQAVMAAYLLTYGLS----QLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-------   94 (394)
T ss_pred             HhccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-------
Confidence            33345777788877755 5555555555555333    99999999999999999988887777776655421       


Q ss_pred             chhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Q 009250          425 FSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGV  503 (539)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~  503 (539)
                       +  ...+....+..+.+.+. .+....+..|.++++.++.+.++.+....++..++|.+.+.+.+..||+..|++.+++
T Consensus        95 -~--~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~  171 (394)
T PRK11652         95 -S--LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL  171 (394)
T ss_pred             -c--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence             1  12222222222222222 3444456678888888999999999999999999999999999889999999888776


Q ss_pred             HHHHHHhhheeeeCCC
Q 009250          504 SLLSALFAYYFIVETK  519 (539)
Q Consensus       504 ~~~~~~~~~~~~~~~~  519 (539)
                      .++..++..++.||++
T Consensus       172 ~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        172 GAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHHHhCCccC
Confidence            6665555445566643

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.19  E-value=3.6e-10  Score=111.03  Aligned_cols=157  Identities=17%  Similarity=0.076  Sum_probs=109.7

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhh
Q 009250          349 SSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHN  428 (539)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (539)
                      +|.+.++.+.+.. ......++..+...++    .++.|+++||+|||+++..+..+..++.++.....        +.+
T Consensus        39 l~~i~~~~~~~~~-~~~~~~s~~~~~~~~~----~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--------~~~  105 (413)
T PRK15403         39 IINVVRDFNADVS-LAPASVSLYLAGGMAL----QWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT--------SMT  105 (413)
T ss_pred             HHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC--------CHH
Confidence            3455566666544 4444555555554333    89999999999999999988888877776665521        222


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 009250          429 LSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA  508 (539)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  508 (539)
                      ..++.-++.+.+.+ ...+....+..|.+|+++++++.++.+....++..++|.+.+.+.+..||+..|++.+++.++..
T Consensus       106 ~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~  184 (413)
T PRK15403        106 QFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            22222222222222 12334456778899999899999999999999999999999999888899999998888777776


Q ss_pred             HhhheeeeCCC
Q 009250          509 LFAYYFIVETK  519 (539)
Q Consensus       509 ~~~~~~~~~~~  519 (539)
                      ++.++..||++
T Consensus       185 ~~~~~~lp~~~  195 (413)
T PRK15403        185 VGLLLAMPETV  195 (413)
T ss_pred             HHHHHhCCCCc
Confidence            65555566653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.19  E-value=2.8e-10  Score=113.36  Aligned_cols=157  Identities=14%  Similarity=0.058  Sum_probs=109.5

Q ss_pred             ccchhHHHHHH-HhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh--cchHHH-HHHHHHHHHHHHHHHh--hhcHH
Q 009250          105 VMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTF-QIDTIPLILGAIISAQ--AHSLD  178 (539)
Q Consensus       105 ~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--a~~~~  178 (539)
                      .....+|.+.+ ++|.  +..+.+++.+.+.++..++.++.|+++||+  |||+.. .....+..++.++..+  ..+.+
T Consensus       271 ~~~~~~P~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~  348 (452)
T PRK11273        271 GILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPT  348 (452)
T ss_pred             HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence            34456666554 4788  677788889999999999999999999999  555433 2223333333333322  23455


Q ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHH-HHHHhcCCCCCCcchhHHHHHhhHHHHHHH
Q 009250          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII-TSLFLGIPAEDDPHWWRTMLYIASLPGFIL  257 (539)
Q Consensus       179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~  257 (539)
                      .+.++.++.|.+..........+..|.+|+++||+++|+.+....+|.. ++|.+.+.+.+..+ |+..|++.++.+++.
T Consensus       349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~  427 (452)
T PRK11273        349 VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILA  427 (452)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            5555555556543333333445678999999999999999888888765 47999999988888 999999888877777


Q ss_pred             HHHhccc
Q 009250          258 ALGMQFT  264 (539)
Q Consensus       258 ~~~~~~~  264 (539)
                      ++....+
T Consensus       428 ~~~~~~~  434 (452)
T PRK11273        428 VILLIVV  434 (452)
T ss_pred             HHHHHHH
Confidence            6655543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.19  E-value=1.1e-09  Score=109.76  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=122.8

Q ss_pred             HHHHHHHhCCCCCchhhHHHHH-HHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHH---Hhh-hcHHHHHHHH
Q 009250          110 IVSIAKELGFEGNPILEGLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGR  184 (539)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~~~r  184 (539)
                      .|.+.+++|.  +..+.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.++.   +.. ++.+.+.+.-
T Consensus       246 ~~~l~~~~G~--s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        246 TTFLIRGVGF--DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            3455667888  8888899874 5668999999999999999999998877766655544332   333 4555556667


Q ss_pred             HHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009250          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT  264 (539)
Q Consensus       185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  264 (539)
                      +++.++.|...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+..| |+..|.+.++.+++..+...++
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            776666676777778889999999999999999999999999988889999988887 9999999998888887766665


Q ss_pred             ccc
Q 009250          265 VES  267 (539)
Q Consensus       265 ~~~  267 (539)
                      +++
T Consensus       403 ~~~  405 (491)
T PRK11010        403 RQT  405 (491)
T ss_pred             Hhc
Confidence            543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.19  E-value=1.3e-10  Score=115.24  Aligned_cols=162  Identities=17%  Similarity=0.135  Sum_probs=107.7

Q ss_pred             HHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCcc
Q 009250          345 VLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED  424 (539)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (539)
                      .....|.+.+ .+.+.. ..+...++..+...++    .++.|+++||+|||+.+..+.++.+++.+++......     
T Consensus        46 ~~~~~p~~~~-~g~s~~-~~g~~~~~~~~~~~~~----~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-----  114 (438)
T TIGR00712        46 FALAMPYLVE-QGFSKG-ELGFALSAISIAYGFS----KFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-----  114 (438)
T ss_pred             HHhhhHHHHH-cCCCHh-HhHHHHHHHHHHHHHh----hhccchhhhccCCceehHHHHHHHHHHHHHHhccccc-----
Confidence            3444555544 565544 5555666555555444    9999999999999999888888777776665442110     


Q ss_pred             chhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH-HhCcchhhHHHHH
Q 009250          425 FSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE-TFGVAPVYAGFGG  502 (539)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~~~~~~~  502 (539)
                       ...........+..+.+.+ ..+.....+.|.+|+++|+++.|+.+....+++.+++.+.+...+ ..||+..|++.++
T Consensus       115 -~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~  193 (438)
T TIGR00712       115 -TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAI  193 (438)
T ss_pred             -cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence             1112222222222232222 234455667799999999999999999999999999988876554 4689999998888


Q ss_pred             HHHHHHHhhheeeeCC
Q 009250          503 VSLLSALFAYYFIVET  518 (539)
Q Consensus       503 ~~~~~~~~~~~~~~~~  518 (539)
                      +.++..++.+++.+|.
T Consensus       194 ~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       194 CAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHHHHHHhccCC
Confidence            8777666655556553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.17  E-value=7.2e-11  Score=113.85  Aligned_cols=160  Identities=19%  Similarity=0.192  Sum_probs=113.0

Q ss_pred             hHHHHHhHH-HHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250          342 INGVLYFSS-LTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP  420 (539)
Q Consensus       342 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  420 (539)
                      ........+ .+.++.+.+.. ..+.+.+...+...++    .++.|+++||+|||+.+..+.++..++.++..+..   
T Consensus        12 ~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---   83 (352)
T PF07690_consen   12 FSIISPALPLYLAEELGLSPS-QIGLLFSAFFLGSALF----SPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS---   83 (352)
T ss_dssp             HHHHHHHHH-HHHCCSTTTSH-CHHHHHHHHHHHHHHH----HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHccCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh---
Confidence            333444555 55566665544 4555555555544333    99999999999999999999998888844444311   


Q ss_pred             CCccchhhHHHHHHHHHHHHHh-cccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Q 009250          421 LDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG  499 (539)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  499 (539)
                           +.+  .+....+..+.+ ....+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..||+..|++
T Consensus        84 -----~~~--~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~  156 (352)
T PF07690_consen   84 -----NFW--LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI  156 (352)
T ss_dssp             -----CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred             -----hHH--HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence                 223  223333333333 334566778899999999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHhhheeee
Q 009250          500 FGGVSLLSALFAYYFIV  516 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~  516 (539)
                      .+++.++..++...+.+
T Consensus       157 ~~~~~~~~~il~~~~~~  173 (352)
T PF07690_consen  157 SAILSLIAAILFILFLP  173 (352)
T ss_dssp             HHHHHHHHHHHHHCCC-
T ss_pred             ccchhhhhhhhHhhhhh
Confidence            99888888775434443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.15  E-value=1.5e-09  Score=108.31  Aligned_cols=151  Identities=11%  Similarity=0.109  Sum_probs=102.3

Q ss_pred             hhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh-cCCchhhHhhHHHHHHHHHHHHHHhc
Q 009250          341 GINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATS  418 (539)
Q Consensus       341 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~  418 (539)
                      .++.+..+++.++ ++.+.+.. ....+.+.......+.    .+++|+++|| +|||+++..+.++..++.+.+.+.. 
T Consensus        29 ~~y~~~~~l~~yl~~~lg~~~~-~a~~i~~~~~~~~~~~----~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~-  102 (489)
T PRK10207         29 GYYGVQGILAVFFVKQLGFSQE-QAFITFGAFAALVYGL----ISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL-  102 (489)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3444444444444 55666654 3334443333333222    6789999999 9999999999999999888776622 


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcch
Q 009250          419 LPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP  495 (539)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~  495 (539)
                             .... .+.......+.+.+ ..+...+++.|.+|++  +|+.++++.+...++|.+++|.+.+++.++.||++
T Consensus       103 -------~~~~-ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~  174 (489)
T PRK10207        103 -------LKPD-LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV  174 (489)
T ss_pred             -------cchh-HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence                   1111 12122222334333 3466678899999877  45789999999999999999999999999999999


Q ss_pred             hhHHHHHHHH
Q 009250          496 VYAGFGGVSL  505 (539)
Q Consensus       496 ~~~~~~~~~~  505 (539)
                      .|++.++..+
T Consensus       175 ~F~i~~i~~~  184 (489)
T PRK10207        175 TYNLCGAGLI  184 (489)
T ss_pred             HHHHHHHHHH
Confidence            9988654333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.14  E-value=5.1e-10  Score=109.44  Aligned_cols=149  Identities=15%  Similarity=-0.005  Sum_probs=116.2

Q ss_pred             hHHHHHHHhCCCCCchhhHHHHHHHHH-HHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh------hhcHHHHH
Q 009250          109 PIVSIAKELGFEGNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ------AHSLDEML  181 (539)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a~~~~~l~  181 (539)
                      ..+.+.+|.|+  ++.++|++...... ...++.++.|++.||+|+|+.+..+.++.++..+....      .++...+.
T Consensus       230 ~~~~~l~~~G~--s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       230 LSKLYLVDAGW--PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             HhhHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            44556677888  88888998887764 66677899999999999999998877766443333221      23344455


Q ss_pred             HHHHHhhhchhhhhhhHHHHHHhcCCC-CccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009250          182 WGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG  260 (539)
Q Consensus       182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~  260 (539)
                      ....+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+..+ |+..|++.+++.++..+.
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence            566677777888888888888888776 789999999999999999999999999998887 999999888777765543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.13  E-value=2.5e-09  Score=103.86  Aligned_cols=182  Identities=13%  Similarity=0.026  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHhHHHHHH-HcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHH
Q 009250          326 VAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYL  404 (539)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~  404 (539)
                      +.+....+.+...+..........+.+.+ +.+.+.. +.+.+.++..+.+.+.    ++..|++.||+|.|+++.++.+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~-q~g~l~ai~~l~~al~----rip~G~l~Dr~G~R~v~~~~~l  108 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTD-QLFLLTALPSVSGALL----RVPYSFMVPIFGGRRWTVFSTA  108 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCChHHHHHHHH
Confidence            33444444444444333334444444444 5666655 5666666666666444    8889999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          405 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      +..+..+.+.+.....     ......+....+..+.+.+..+.....+++.+|+++||++.|+....+++|..+++.+.
T Consensus       109 l~~i~~~~~~~a~~~~-----~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        109 ILIIPCVWLGIAVQNP-----NTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHHHHHHHccc-----CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            8887777666531100     11222222222333333334455667788999999999999999777777777666655


Q ss_pred             HHHH-----HHhC-------------cchhhHHHHHHHHHHHHhhheeeeC
Q 009250          485 LDLV-----ETFG-------------VAPVYAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       485 ~~l~-----~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      +.+.     +..|             ++...++...+.++..++.+++.++
T Consensus       184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5433     3232             4445556666666666665555544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.13  E-value=5.5e-10  Score=105.86  Aligned_cols=153  Identities=16%  Similarity=0.092  Sum_probs=110.3

Q ss_pred             HHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCcc
Q 009250          345 VLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED  424 (539)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (539)
                      +..++--++++.+...     ++.++..+....|.++.-++.+++.+|+|+-+++.+++.+..+=++.+..+.       
T Consensus       390 v~tFLfWHled~~~~~-----~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-------  457 (618)
T KOG3762|consen  390 VFTFLFWHLEDLGGIK-----TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-------  457 (618)
T ss_pred             HHHHHHHHHhhcCCcc-----eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-------
Confidence            3344444456655333     3444555566666777799999999999999999999998888888777642       


Q ss_pred             chhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHH-HHHHHHHHHHHHHHHHhCcchhhHHHHHH
Q 009250          425 FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVETFGVAPVYAGFGGV  503 (539)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~l~~~~g~~~~~~~~~~~  503 (539)
                       +.|..+..-++-+...+.. +....+|+....||+.++++.|+...... +|-.+|+++.|.+.+.+|-+..|.++++.
T Consensus       458 -n~W~vLPieilqgit~ali-Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giA  535 (618)
T KOG3762|consen  458 -NPWMVLPIEILQGITHALI-WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIA  535 (618)
T ss_pred             -CchheeeHHHHHHHHHHHH-HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHH
Confidence             3333333333333333333 33345888999999999999999887764 78889999999999999999999988888


Q ss_pred             HHHHHHhh
Q 009250          504 SLLSALFA  511 (539)
Q Consensus       504 ~~~~~~~~  511 (539)
                      +++..++.
T Consensus       536 cl~~l~~~  543 (618)
T KOG3762|consen  536 CLVTLALF  543 (618)
T ss_pred             HHHHHHHH
Confidence            77776654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.13  E-value=9.1e-10  Score=111.28  Aligned_cols=161  Identities=17%  Similarity=0.082  Sum_probs=108.4

Q ss_pred             hhHHHHHHHhCCCCCchh---------hHH-HHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhc-
Q 009250          108 GPIVSIAKELGFEGNPIL---------EGL-VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS-  176 (539)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~---------~~~-~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-  176 (539)
                      ...|.+.++.|.+.+...         ... ...+..++..++.++.++++||+|||++++++..+.+++.++.++..+ 
T Consensus       309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~  388 (502)
T TIGR00887       309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH  388 (502)
T ss_pred             cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            346777778887422110         011 233444566678889999999999999999988888777766654321 


Q ss_pred             ---HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCc---------chhH
Q 009250          177 ---LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------HWWR  244 (539)
Q Consensus       177 ---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------~~wr  244 (539)
                         ...+...-+...++..+..+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+..         .++.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  468 (502)
T TIGR00887       389 LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG  468 (502)
T ss_pred             cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccch
Confidence               1112211111122222244566677899999999999999999999999999999998887632         1146


Q ss_pred             HHHHhhHHHHHHHHHHhcccccch
Q 009250          245 TMLYIASLPGFILALGMQFTVESP  268 (539)
Q Consensus       245 ~~f~~~~~~~~~~~~~~~~~~~~p  268 (539)
                      ..|++.++..++..+..+++||+.
T Consensus       469 ~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       469 HVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             HHHHHHHHHHHHHHHHheEeccCC
Confidence            677887777777666666778864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.13  E-value=4e-10  Score=109.81  Aligned_cols=158  Identities=18%  Similarity=0.225  Sum_probs=114.3

Q ss_pred             HHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccc
Q 009250          346 LYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF  425 (539)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (539)
                      ....|.+.++.+.+.. ..+...++..+...++    .++.|+++||+|||+.+..+.++..++...+....        
T Consensus        11 ~p~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--------   77 (377)
T PRK11102         11 LPALPVIAADFGVSAG-SVQMTLSAYILGFAIG----QLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--------   77 (377)
T ss_pred             hccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--------
Confidence            3455677777777654 5555555555555444    99999999999999999999888888877776522        


Q ss_pred             hhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Q 009250          426 SHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS  504 (539)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~  504 (539)
                      +.+.  .....+..+++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|++.+.+.
T Consensus        78 ~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  155 (377)
T PRK11102         78 TIDQ--LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA  155 (377)
T ss_pred             cHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence            1122  2222222233222 234556778899999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHhhheeeeCC
Q 009250          505 LLSALFAYYFIVET  518 (539)
Q Consensus       505 ~~~~~~~~~~~~~~  518 (539)
                      ++..++..+..+|+
T Consensus       156 ~~~~~~~~~~~~~~  169 (377)
T PRK11102        156 ILAAALVFFFIPET  169 (377)
T ss_pred             HHHHHHHHHhCCcc
Confidence            77766655555554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.12  E-value=1.3e-09  Score=107.97  Aligned_cols=136  Identities=18%  Similarity=0.077  Sum_probs=99.0

Q ss_pred             cccchhHHHHHH-HhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHH-H---HhhhcHH
Q 009250          104 GVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII-S---AQAHSLD  178 (539)
Q Consensus       104 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~---~~a~~~~  178 (539)
                      .......|.+.+ .+|.  +..+.++....+.++..++.++.|+++||+|||+++..+..+..+..+. .   ...+++.
T Consensus       255 ~~~~~~~p~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (434)
T PRK15075        255 YLITVYTPTFGKTVLHL--SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFA  332 (434)
T ss_pred             HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence            334445666555 4788  7777788888999999999999999999999999988765544332221 1   1224444


Q ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhH-HHHHHHHHHHHHhcCCCCCCcc
Q 009250          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH  241 (539)
Q Consensus       179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~  241 (539)
                      .+.+..++.|++.+...+....++.|.+|+++|+.+.++.. .+..++..++|.+.+++.+..+
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        333 RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            45555666777777777777788999999999999999864 4444557778888888887766

>PRK11043 putative transporter; Provisional

Probab=99.12  E-value=1.8e-09  Score=106.10  Aligned_cols=152  Identities=14%  Similarity=0.104  Sum_probs=105.2

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhh
Q 009250          349 SSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHN  428 (539)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (539)
                      .+.+.++.+.+.. ..+...++..+...++    .++.|+++||+|||+.+..+..+..++.++.....         +.
T Consensus        29 ~~~i~~~~~~s~~-~~g~~~s~~~~~~~~~----~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~   94 (401)
T PRK11043         29 FKAIQADLQTSAS-AVSASLSLFLAGFALG----QLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE---------SA   94 (401)
T ss_pred             HHHHHHHHCCCHH-HHHHHHHHHHHHHHHH----HHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc---------CH
Confidence            3445667776654 5566666655555444    99999999999999999988887777766665421         11


Q ss_pred             HHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Q 009250          429 LSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLS  507 (539)
Q Consensus       429 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  507 (539)
                       ..+....+..+.+.+. .+.....+.|.+|+++++...+..+....++..++|.+.+.+.+..||+..|++.+++.++.
T Consensus        95 -~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~  173 (401)
T PRK11043         95 -AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL  173 (401)
T ss_pred             -HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence             1222222222222222 23344667788999888889999888889999999999999999999999998887777776


Q ss_pred             HHhhheee
Q 009250          508 ALFAYYFI  515 (539)
Q Consensus       508 ~~~~~~~~  515 (539)
                      .++.+...
T Consensus       174 ~~~~~~~~  181 (401)
T PRK11043        174 ILPTLRLK  181 (401)
T ss_pred             HHHHHHcC
Confidence            65544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.12  E-value=1.3e-09  Score=100.94  Aligned_cols=172  Identities=19%  Similarity=0.117  Sum_probs=127.2

Q ss_pred             HHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHH
Q 009250          332 ALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISML  411 (539)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  411 (539)
                      ...+...++....+....+.+-++.+.+.. +..++..+..+.+.+.    ++..|.+.||+|.|++...+.++..+-.+
T Consensus        20 ~~af~v~F~VW~l~s~l~~~i~~~~~LS~~-q~~ll~aiPil~Gall----Rl~~g~l~drfGgR~~~~~s~~l~~IP~~   94 (417)
T COG2223          20 TLAFDVGFMVWTLFSPLGVFIKSDFGLSEG-QKGLLVAIPILVGALL----RLPYGFLTDRFGGRKWTILSMLLLLIPCL   94 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCHH-HHHHHHHHHHHHhHHH----HHHHHhhhcccCchHHHHHHHHHHHHHHH
Confidence            333333333444444455555577777665 7777777777777555    99999999999999999999999888888


Q ss_pred             HHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009250          412 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF  491 (539)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~  491 (539)
                      .+.+....+     +.  +.+..+....+.+.+........+++.+|++++|.++|++. .+|+|..+...+.+.+....
T Consensus        95 ~~~~a~~~~-----~~--~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          95 GLAFAVTYP-----ST--WQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHccCC-----ch--HHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            887755322     11  33333444445555556666788999999999999999999 99999999999999999988


Q ss_pred             C---cchhhHHHHHHHHHHHHhhheeee
Q 009250          492 G---VAPVYAGFGGVSLLSALFAYYFIV  516 (539)
Q Consensus       492 g---~~~~~~~~~~~~~~~~~~~~~~~~  516 (539)
                      |   |+....+.....++..++.++..+
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8   888877777777777777666554

>TIGR00898 2A0119 cation transport protein

Probab=99.11  E-value=2.9e-10  Score=115.34  Aligned_cols=138  Identities=19%  Similarity=0.080  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcH--HHHHHHHHHhhhchhhhhhhHHHHHHhc
Q 009250          128 LVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGRFLVGLGIGVNTVLVPIYISEV  205 (539)
Q Consensus       128 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~  205 (539)
                      +......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445566677888999999999999999999999999998888877654  4555666777788888888999999999


Q ss_pred             CCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccch
Q 009250          206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP  268 (539)
Q Consensus       206 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p  268 (539)
                      +|++.|+.++|+.+....+|.+++|.+.+ +. ..+ +...+++.+...++..++.+++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKW-LFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHH-HhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            99999999999999999999999999988 43 333 67788888888888877777888763

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.11  E-value=9.5e-10  Score=101.82  Aligned_cols=177  Identities=16%  Similarity=0.104  Sum_probs=148.0

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      ..+++.-..+.++.+. +.......-..++|+  ++.+..++.....+..+++++++|+|.||+|.|+++..++++..+.
T Consensus       255 ~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gl--s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~  331 (438)
T COG2270         255 VLFLIARFFYIDGVNT-ILAMGGVFGAADLGL--SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA  331 (438)
T ss_pred             HHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence            3444444445555443 222222333459999  8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009250          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (539)
Q Consensus       168 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f  247 (539)
                      ++..-+...-..+.++-.+.|...|..+....++..+..|+++-++.+|+++...-.+..+||.+-+.+.+..+.-|.-+
T Consensus       332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            99988888877788888999999999999999999999999999999999999999999999999999888777788888


Q ss_pred             HhhHHHHHHHHHHhcccccc
Q 009250          248 YIASLPGFILALGMQFTVES  267 (539)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~  267 (539)
                      ....++..+.++..+.+|++
T Consensus       412 ~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         412 LSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHhhHhhEEeecCC
Confidence            87777777777777777654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.10  E-value=9.8e-11  Score=109.15  Aligned_cols=167  Identities=13%  Similarity=0.090  Sum_probs=120.9

Q ss_pred             HHHHHhHHHHHHHcCCChh--HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250          343 NGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP  420 (539)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  420 (539)
                      +.+....+...+..+.++.  ........+...+.       +++.|++.||+.|++++.+|..+-.++.+...+.    
T Consensus        50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~-------sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----  118 (493)
T KOG1330|consen   50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIA-------SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----  118 (493)
T ss_pred             hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHH-------HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----
Confidence            3333333333333444433  33444445555554       9999999999999999999999998888887773    


Q ss_pred             CCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHH
Q 009250          421 LDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAG  499 (539)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~  499 (539)
                           .+.+.++..=.+.+..-..+.|+...+++|.+|..+|++++++.+....+|..+|-...+.+.+..+ |++.|..
T Consensus       119 -----~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~  193 (493)
T KOG1330|consen  119 -----NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRG  193 (493)
T ss_pred             -----HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEe
Confidence                 2222222222222222344568888999999999999999999999999999999888888887777 9999999


Q ss_pred             HHHHHHHHHHhhheeeeCCCCCCHHH
Q 009250          500 FGGVSLLSALFAYYFIVETKGRSLEE  525 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (539)
                      .+++.++.+++..++.+|..++..++
T Consensus       194 ~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  194 SAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             ehHHHHHHHHHHHhhccCcccccccc
Confidence            99999999998888888776654333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.09  E-value=1.5e-09  Score=101.66  Aligned_cols=160  Identities=13%  Similarity=0.095  Sum_probs=120.3

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHHHHHH---hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKE---LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      .+.+..++.++.......+....+.+.++   +|+  ++.+.++..+.+..+..++.++.+++.||+|+|+++.++..+.
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~--s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~  218 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGL--PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            34444444444443344444444544443   566  8888899999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (539)
Q Consensus       165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr  244 (539)
                      .++.++....++...+ .+-++.|++.+..+|...+...+..+++ .+.+.++. ....+|..+.|++.|.+.+..+ .+
T Consensus       219 ~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~  294 (310)
T TIGR01272       219 VLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQ  294 (310)
T ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-ch
Confidence            8887777666554333 4566899999999999999999988765 45666665 5667899999999999988777 88


Q ss_pred             HHHHhhHHH
Q 009250          245 TMLYIASLP  253 (539)
Q Consensus       245 ~~f~~~~~~  253 (539)
                      ..|++..+.
T Consensus       295 ~a~~v~~~~  303 (310)
T TIGR01272       295 LAFALPVPC  303 (310)
T ss_pred             HHHHHHHHH
Confidence            888754433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.08  E-value=2.5e-09  Score=104.43  Aligned_cols=153  Identities=16%  Similarity=0.054  Sum_probs=101.6

Q ss_pred             HhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccch
Q 009250          347 YFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS  426 (539)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (539)
                      ...+.+.++.+.+.. ..+.+.....+...+.    .++.|+++||+|||+++..+.++..++.+.+....         
T Consensus        24 ~~~~~~~~~~~~s~~-~~~~~~~~~~l~~~l~----~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~---------   89 (393)
T PRK11195         24 FAAIALLKELHYPDW-SQPLLQMFFVLAYIVL----APFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI---------   89 (393)
T ss_pred             HHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHH----HhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH---------
Confidence            334445566665543 4455555555554333    99999999999999999999988877766554421         


Q ss_pred             hhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Q 009250          427 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLL  506 (539)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  506 (539)
                      +.  ++.. ++.+.......|...+++.|.+|+++|+++.|+.+....++..+||.+.|.+.+.. +...+.+.+.+.++
T Consensus        90 ~~--~~~r-~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~  165 (393)
T PRK11195         90 HP--LLAY-GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLL  165 (393)
T ss_pred             HH--HHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            11  2222 22222233345777889999999999999999999999999999999999998864 55555554444333


Q ss_pred             HHHhhheeeeCC
Q 009250          507 SALFAYYFIVET  518 (539)
Q Consensus       507 ~~~~~~~~~~~~  518 (539)
                      +. +..+.+||.
T Consensus       166 ~~-~~~~~l~~~  176 (393)
T PRK11195        166 AA-LFNLFIPRL  176 (393)
T ss_pred             HH-HHHhcCCCC
Confidence            33 233455543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.08  E-value=2.5e-09  Score=105.95  Aligned_cols=156  Identities=12%  Similarity=-0.009  Sum_probs=100.5

Q ss_pred             hhHHHH-HHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH--h--hhcHHHHHH
Q 009250          108 GPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q--AHSLDEMLW  182 (539)
Q Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--a~~~~~l~~  182 (539)
                      ..+|.+ .+++|.  +..+.++..++..++..+++++.|+++||+|||+++.++.++.++..+...  .  .++....+.
T Consensus       264 ~~lp~~l~~~~g~--s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        264 TYMQKYLVNTAGM--HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            345554 456787  777778888888888889999999999999999988877665444333221  1  223332222


Q ss_pred             HHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHH-HHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009250          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (539)
Q Consensus       183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  261 (539)
                      .-++.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+. ..+.|...++..++..++..+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHH
Confidence            222233334444455677889999999999999998765443 3444667666553 33436666666666666665555


Q ss_pred             ccccc
Q 009250          262 QFTVE  266 (539)
Q Consensus       262 ~~~~~  266 (539)
                      +++++
T Consensus       421 ~~l~~  425 (432)
T PRK10406        421 LMLHR  425 (432)
T ss_pred             HHhhh
Confidence            55433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.07  E-value=1.7e-09  Score=107.61  Aligned_cols=118  Identities=23%  Similarity=0.200  Sum_probs=100.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-hcHHHHHHHHHHhhhchhhhhhhHHH
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-HSLDEMLWGRFLVGLGIGVNTVLVPI  200 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~~~r~l~G~~~~~~~~~~~~  200 (539)
                      ++.+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566788888899999999999999999999999999999888888877765 46677778889999999999999999


Q ss_pred             HHHhcCC-------CCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          201 YISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       201 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      +++|..+       ++++|.+.++.+....+|..+++.+.+.+.+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998865       45579999999999999999999888876543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=99.07  E-value=6.8e-10  Score=107.11  Aligned_cols=136  Identities=15%  Similarity=0.083  Sum_probs=108.5

Q ss_pred             cchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 009250          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR  184 (539)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r  184 (539)
                      ....+|.+.++.|.  +..+.+++.+.+.++..++.++.|++.||+ +||+.+..+.++.+++.+++.+.++..... .-
T Consensus       216 ~~~~lp~~~~~~g~--~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  292 (355)
T TIGR00896       216 LIGWLPAILISHGA--SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA  292 (355)
T ss_pred             HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence            34456777778887  788889999999999999999999999999 567777788888888877777765543332 45


Q ss_pred             HHhhhchhhhhhhHHHHHHhcCC-CCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250          185 FLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (539)
Q Consensus       185 ~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr  244 (539)
                      ++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.++.++|.
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            78899999999888777776555 4567888898888888999999999999887766443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.07  E-value=2.7e-09  Score=107.13  Aligned_cols=154  Identities=13%  Similarity=0.098  Sum_probs=99.0

Q ss_pred             hhHHHHHhHHHHH-HHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh-cCCchhhHhhHHHHHHHHHHHHHHhc
Q 009250          341 GINGVLYFSSLTF-QDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATS  418 (539)
Q Consensus       341 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~  418 (539)
                      .++.+..+.+.++ ++.+.+.. ................    .+++|+++|| +|||+.+..+.++..++..++.+.. 
T Consensus        36 ~~y~~~~~l~~yl~~~lg~s~~-~a~~~~~~~~~~~~~~----~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-  109 (500)
T PRK09584         36 GYYGLQGIMAVYLVKQLGMSEA-DSITLFSSFSALVYGL----VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-  109 (500)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3444555555555 56676654 3333333222222111    4689999999 5999999999988888876665521 


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcch
Q 009250          419 LPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRT--RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP  495 (539)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~  495 (539)
                             ... ..+.......+.+.+ ..+...++..|.+|++.  ++.+.++.+...++|.+++|.+.+++.++.||+.
T Consensus       110 -------~~~-~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~  181 (500)
T PRK09584        110 -------HDA-GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV  181 (500)
T ss_pred             -------ccH-HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence                   111 112222222233333 34555677889887643  4567888899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 009250          496 VYAGFGGVSLLSA  508 (539)
Q Consensus       496 ~~~~~~~~~~~~~  508 (539)
                      .|.+.++..+++.
T Consensus       182 ~F~i~~i~~~i~~  194 (500)
T PRK09584        182 AFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988765444443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=8.8e-08  Score=91.90  Aligned_cols=106  Identities=11%  Similarity=-0.029  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCC
Q 009250          130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK  209 (539)
Q Consensus       130 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  209 (539)
                      .++-+..+.+++++.+.+.|+.|+|..++++...+....+..-+- |-+.++++-.+.|+|.+..+..--.+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            778888888999999999999999999999999999888877664 4666888999999999999999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          210 YRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       210 ~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                      ++.+..++.......+.++|..+-..+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            999999998888888888886665443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.03  E-value=1.6e-09  Score=88.91  Aligned_cols=125  Identities=14%  Similarity=0.164  Sum_probs=93.1

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccc
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRT  461 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~  461 (539)
                      .++.+++.||++||+.+..+.....++.+.+....        +.+....  .....+.+.+ ..+....+..|..|+++
T Consensus        15 ~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880        15 SPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--------NITVLII--ARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             HhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            88999999999999998888877777766654421        1222222  2222222222 34566678889999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeC
Q 009250          462 RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE  517 (539)
Q Consensus       462 ~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  517 (539)
                      |+++.++.+....++..++|.+.+.+.+..+++..+.+.+.+.++..+..+...+|
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999988898888888887777776666555443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.4e-09  Score=99.68  Aligned_cols=147  Identities=11%  Similarity=0.125  Sum_probs=106.8

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhh----hhcchHHHHH-HHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQI-DTIP  163 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~-~~~~  163 (539)
                      ++.++...+-..+....-....+++.++.|+  +....+.+--+.-+...+.+++.|..+|    ||||||.++. +.+.
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGv--phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGV--PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCC--CcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            3333433344444444445566777788888  5555566666777777889999999999    5898877666 5556


Q ss_pred             HHHHHHHHHhhhcHH-----------------HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCcccc-chhhhHHHHHHH
Q 009250          164 LILGAIISAQAHSLD-----------------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLG  225 (539)
Q Consensus       164 ~~~~~~~~~~a~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G  225 (539)
                      .+++.++.+++.++.                 .++++-.+.=++.-.....+-+++.|...++++.+ +++.+....++|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            677777777775443                 34445556666777788899999999998777666 999999999999


Q ss_pred             HHHHHHhcCCCC
Q 009250          226 IITSLFLGIPAE  237 (539)
Q Consensus       226 ~~~~~~~~~~l~  237 (539)
                      ..+|..++.++.
T Consensus       192 nvLGY~~g~y~~  203 (498)
T KOG0637|consen  192 NVLGYALGSYLG  203 (498)
T ss_pred             ceeeeecccccC
Confidence            999999988554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.03  E-value=2.1e-07  Score=89.56  Aligned_cols=378  Identities=11%  Similarity=-0.009  Sum_probs=202.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      ...++.+.++..++.-+.....+.+..+..-+ +-.-.+...-+-.+...+.++..|.+.||..|.+++..+.+.--++.
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~-sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG-SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence            45677788888888888888888777777431 22223333444455566788889999999999998887776643333


Q ss_pred             HHHHh------h--h----cHHH---HHHHHHHhhhchhhh-hhhHHHHHHhcC------CCCccccchhhhHHHHHHHH
Q 009250          169 IISAQ------A--H----SLDE---MLWGRFLVGLGIGVN-TVLVPIYISEVA------PTKYRGSLGTLCQVGTCLGI  226 (539)
Q Consensus       169 ~~~~~------a--~----~~~~---l~~~r~l~G~~~~~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~  226 (539)
                      .+++.      .  +    +-+.   +++.-.+.|.-.-.. .....++=-||.      +++.+.+.++.+.-.-.+..
T Consensus        83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck  162 (432)
T PF06963_consen   83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence            32221      1  1    1112   122222222211111 111122223553      23345666777777777889


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc-----ccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHH
Q 009250          227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT-----VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ  301 (539)
Q Consensus       227 ~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (539)
                      +++|++.+.+....+ .+...++.+...++..+.=+++     ...|. +..+++.++.......-  ....+.......
T Consensus       163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  238 (432)
T PF06963_consen  163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE--SSSESSSDPSIL  238 (432)
T ss_pred             HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc--ccccccchhhHH
Confidence            999999999988777 7777777777776665443322     12232 22222111111000000  000000000011


Q ss_pred             HHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccc
Q 009250          302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKY  381 (539)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  381 (539)
                      ....+.-+.....|+..++.+.+...+...++++...     .+......|+...|.++. ..+..-++..+.+..+   
T Consensus       239 ~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVL-----sf~~lmt~yl~~~G~s~~-~igi~R~~gav~Gl~g---  309 (432)
T PF06963_consen  239 KRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVL-----SFGGLMTAYLKSQGYSPS-VIGIFRGLGAVFGLLG---  309 (432)
T ss_pred             HHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHH---
Confidence            1111111122346777777776665555444444321     123344556666777765 5555555555555444   


Q ss_pred             hhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc---cccccccccccC
Q 009250          382 CALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG---PVTGLVIPELSS  458 (539)
Q Consensus       382 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p  458 (539)
                       .++..++.+|+|..+.-.++.....+.+.+.......+..+.  .......++......=.|.+   ....-++.|..|
T Consensus       310 -T~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~--~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~  386 (432)
T PF06963_consen  310 -TWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF--SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP  386 (432)
T ss_pred             -HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC
Confidence             999999999999888777776666555444444333321110  11111111111111112221   223456779999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHH
Q 009250          459 NRTRGKIMGFSFSVHWVCNFLVGLF  483 (539)
Q Consensus       459 ~~~~~~~~g~~~~~~~~g~~~~~~~  483 (539)
                      +++||+..|+-+...++...+.-.+
T Consensus       387 ~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  387 ESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.02  E-value=6.5e-09  Score=100.57  Aligned_cols=161  Identities=16%  Similarity=0.092  Sum_probs=120.2

Q ss_pred             cccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh---cHH--
Q 009250          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH---SLD--  178 (539)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---~~~--  178 (539)
                      +........+-++-|+  +..++.+......+...+..+++..+.||+|||+.++.+..+..+..+++....   +..  
T Consensus       287 ~ai~~Yst~i~~~aG~--~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~  364 (485)
T KOG0569|consen  287 NAIFFYSTSIFKTAGF--TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGS  364 (485)
T ss_pred             ceeHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444455677888888  777778999999999999999999999999999999999999998888877541   111  


Q ss_pred             ----HHHHHHHHhhhchhh-hhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHH
Q 009250          179 ----EMLWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP  253 (539)
Q Consensus       179 ----~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~  253 (539)
                          ..+++.++..++.+. ..|...-+.+|.+|++.|..++++.....-+...+-...-..+.+..|.  +.|+...++
T Consensus       365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~  442 (485)
T KOG0569|consen  365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIP  442 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHH
Confidence                122333333332222 4678888999999999999999999888888877776666666666653  677777777


Q ss_pred             HHHHHHHh-cccccch
Q 009250          254 GFILALGM-QFTVESP  268 (539)
Q Consensus       254 ~~~~~~~~-~~~~~~p  268 (539)
                      +++..+.. ..+||+.
T Consensus       443 ~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  443 LAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHhCcccC
Confidence            77666554 5588874

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.02  E-value=3.2e-09  Score=106.47  Aligned_cols=174  Identities=16%  Similarity=0.052  Sum_probs=116.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHH-HHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHH--------HH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF--------QI  159 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l--------~~  159 (539)
                      ++..++..+...+....+...+|.+ .+.+|.  +..+.+++.++..++..++.++.|+++||+++|+..        ..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRV--SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            4444555555555554545556655 456788  888889999999999999999999999998755221        11


Q ss_pred             HHHHH--HHHHHHHHh-hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          160 DTIPL--ILGAIISAQ-AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       160 ~~~~~--~~~~~~~~~-a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                      +....  ++..++... ..+....+++-++.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            11111  111111222 23444444455555555555555555555677665 799999999999999999999999988


Q ss_pred             CCCc--chhHHHHHhhHHHHHHHHHHhcccc
Q 009250          237 EDDP--HWWRTMLYIASLPGFILALGMQFTV  265 (539)
Q Consensus       237 ~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~  265 (539)
                      .+..  +.|+..|++.++..++..++..++.
T Consensus       420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            7643  3499999999888888776665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.01  E-value=3.1e-09  Score=119.13  Aligned_cols=143  Identities=20%  Similarity=0.193  Sum_probs=121.4

Q ss_pred             HHHHHHhCCCCCch-hhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhh
Q 009250          111 VSIAKELGFEGNPI-LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGL  189 (539)
Q Consensus       111 ~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  189 (539)
                      +.+.+++|.  +.. +.+++.+.+.++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|+
T Consensus       257 ~~~~~~~g~--s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        257 AYAKEVLGL--DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             HHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            345567888  777 88999999999999999999999999999999999999999999888888899999999999999


Q ss_pred             chhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC-cchhHHHHHhhHHHHHH
Q 009250          190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-PHWWRTMLYIASLPGFI  256 (539)
Q Consensus       190 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-~~~wr~~f~~~~~~~~~  256 (539)
                      +.+...+...+++.+..|+++||+++++.+....+|.++++.+++.+... .+ +...|++.+.+.++
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~  401 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS-PAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888777665432 23 66666665554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.01  E-value=1e-08  Score=99.09  Aligned_cols=171  Identities=16%  Similarity=0.228  Sum_probs=133.7

Q ss_pred             HHHHHHhhhhhcccccchhHHHHHHHhC-CCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVSIAKELG-FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI  169 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  169 (539)
                      ...+..++.+.....+....+.+.+|.| .  +....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..
T Consensus       211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~--~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~  288 (400)
T PF03825_consen  211 VFLLAAFLIGISHAAYYTFFSIYLQELGGY--SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            3334445556666666667777778877 5  555567777777788888889999999999999999999999999998


Q ss_pred             HHHhh-hcHHHHHH----HHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHH-HHHHHHHHHHHhcCCCCCCcch-
Q 009250          170 ISAQA-HSLDEMLW----GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV-GTCLGIITSLFLGIPAEDDPHW-  242 (539)
Q Consensus       170 ~~~~a-~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~~~-  242 (539)
                      +.++. ++.+...+    ...+.|+..+..+.+...++.+..|++.|+++.++++. ..++|..+|..++|++.+..+. 
T Consensus       289 l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  289 LYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             HHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence            88887 55554433    34569999999999999999999999999999999875 5789999999999999887551 


Q ss_pred             ----hHHHHHhhHHHHHHHHHHhcc
Q 009250          243 ----WRTMLYIASLPGFILALGMQF  263 (539)
Q Consensus       243 ----wr~~f~~~~~~~~~~~~~~~~  263 (539)
                          |...+.+.+.+.++..++..+
T Consensus       369 ~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  369 GMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHh
Confidence                555666666666655554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.00  E-value=6.8e-09  Score=90.23  Aligned_cols=178  Identities=15%  Similarity=0.118  Sum_probs=126.8

Q ss_pred             CCCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHH
Q 009250           81 GWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQID  160 (539)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  160 (539)
                      .......++.++|..+.+..+-.-..++  ..+++.||+  |+...+-+.+.-..-.++.+++.|.++|++|++...+.+
T Consensus       261 ~f~ppfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGl--S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~  336 (459)
T KOG4686|consen  261 TFYPPFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGL--SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS  336 (459)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCC--ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence            3444555666777666665544433332  357899999  888888888888888889999999999999999877765


Q ss_pred             HHHH-HHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          161 TIPL-ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       161 ~~~~-~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      ..+. .++-....|  +++.=.++..+.|+.....-......++...|+++.|.+.+..+...++|..+.+++++.+.+.
T Consensus       337 a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  337 ACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            5444 333333333  3333355677888888877666777888899999999999999999999999999999999987


Q ss_pred             cch--hHHHHH-hhHHHHHHHHHHhccc
Q 009250          240 PHW--WRTMLY-IASLPGFILALGMQFT  264 (539)
Q Consensus       240 ~~~--wr~~f~-~~~~~~~~~~~~~~~~  264 (539)
                      .++  |--.|. +.+.+++....+.+.+
T Consensus       415 ~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  415 DGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            765  433443 4444444444444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.00  E-value=2.8e-09  Score=118.97  Aligned_cols=148  Identities=16%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             hhHHHHH-HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh------------
Q 009250          108 GPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA------------  174 (539)
Q Consensus       108 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------  174 (539)
                      ..+|.+. +.+|.  ++.+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.            
T Consensus       246 ~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        246 SQLPLLAKETLGG--DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HHhHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            3455554 45787  88889999999999999999999999999888877777777766666555543            


Q ss_pred             --------hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009250          175 --------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM  246 (539)
Q Consensus       175 --------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~  246 (539)
                              ++.+.++++-++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++++.+.....++...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    677888889999999999999999999999999999999999999999999999999988876433226777


Q ss_pred             HHhhHHHHHHH
Q 009250          247 LYIASLPGFIL  257 (539)
Q Consensus       247 f~~~~~~~~~~  257 (539)
                      |++.++..++.
T Consensus       404 ~~~~~~~~~~~  414 (1140)
T PRK06814        404 ILFIALANLIV  414 (1140)
T ss_pred             HHHHHHHHHHH
Confidence            66655544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.99  E-value=6.2e-09  Score=101.89  Aligned_cols=158  Identities=16%  Similarity=0.086  Sum_probs=108.4

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      ........|.+.++.+.+.. +.+.+.....+...++    ++..|++.||+|||+.+..+.++.+++.+++.....   
T Consensus        19 ~~~~~~l~~~~~~~~~~s~~-~~g~l~s~~~~g~~i~----~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---   90 (410)
T TIGR00885        19 NDITNPMVPQFQQAFTLTAF-QAALVQSAFYGGYFIM----AIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---   90 (410)
T ss_pred             HHhHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---
Confidence            34445667888788877654 5556555555555444    999999999999999999999998888777543221   


Q ss_pred             CccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH----------
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET----------  490 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~----------  490 (539)
                          ...........+..+.+.+. .+....++.+..|++++++..++.+....+|..++|.+.+.+...          
T Consensus        91 ----~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~  166 (410)
T TIGR00885        91 ----IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL  166 (410)
T ss_pred             ----hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence                11222222233333333333 344456777888888899999999999999999999998877522          


Q ss_pred             ----------------hCcchhhHHHHHHHHHHHHhh
Q 009250          491 ----------------FGVAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       491 ----------------~g~~~~~~~~~~~~~~~~~~~  511 (539)
                                      .+|+.+|.+.+++.++..++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            357888887777666654443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.98  E-value=3.3e-09  Score=96.34  Aligned_cols=110  Identities=19%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh
Q 009250          363 LASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA  442 (539)
Q Consensus       363 ~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (539)
                      ..+..+++.+++.       ++.+|.++||+|||.++.++.+..++..++.+.          ......+...=+..|..
T Consensus        72 flGSsF~ilQ~~s-------S~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----------S~~F~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   72 FLGSSFSILQFIS-------SPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----------SRNFAAFVLARFLGGIF  134 (451)
T ss_pred             hHhhHHHHHHHHh-------hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhc
Confidence            4445555666665       999999999999999999999999887777766          33333333334555666


Q ss_pred             cccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009250          443 IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE  489 (539)
Q Consensus       443 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~  489 (539)
                      -+...+..++++|++++++|+.+++..++...+|.++||.+.|++..
T Consensus       135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            66666778999999999999999999999999999999999999887

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.97  E-value=1.8e-08  Score=98.73  Aligned_cols=189  Identities=16%  Similarity=0.092  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhh----hcCCchhhH
Q 009250          325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMD----KEGRQKLLI  400 (539)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d----r~g~r~~~~  400 (539)
                      ++++.........++. +.....+.+.+++..+.+.. ..+.+..+..+.+.+.    .++.|+++|    |+|||+.++
T Consensus         4 ~~li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~-~~~~i~~~~~l~~~i~----~Pi~G~lSDr~~sr~GRRrp~i   77 (477)
T TIGR01301         4 RKLLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHA-WASIIWLCGPLSGLLV----QPLVGYLSDRCTSRFGRRRPFI   77 (477)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HhHeeehhcCCCCCCCChHHHH
Confidence            3444445555555554 55566667778888888654 6666666666666555    999999999    599999877


Q ss_pred             hh-HHHHHHHHHHHHHHhcCC----CC-ccchhhH--HHHHHHHHHHHHhcc-cccccccccccccCcccc--cchhhHH
Q 009250          401 GS-YLGMAISMLLVVGATSLP----LD-EDFSHNL--SILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTR--GKIMGFS  469 (539)
Q Consensus       401 ~~-~~~~~~~~~~~~~~~~~~----~~-~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~--~~~~g~~  469 (539)
                      .+ .+...+++.++.......    .. +......  ......+...-+... ..+...+++.|..|+++|  +.+.++.
T Consensus        78 l~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~  157 (477)
T TIGR01301        78 AAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYF  157 (477)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHH
Confidence            64 455555555554422110    00 0000111  111111111111221 233456889999998765  5799999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHh-------------CcchhhHHHHHHHHHHHHhhheeeeCCC
Q 009250          470 FSVHWVCNFLVGLFFLDL--VETF-------------GVAPVYAGFGGVSLLSALFAYYFIVETK  519 (539)
Q Consensus       470 ~~~~~~g~~~~~~~~~~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (539)
                      +....+|+.+++.+.+..  .+..             +.+..|.+.+++.++..++..+..+|..
T Consensus       158 ~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       158 SFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            999999999999988764  2222             3566788888888888888888888864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.97  E-value=5e-08  Score=99.48  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=123.2

Q ss_pred             hhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhc--------HH
Q 009250          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLILGAIISAQAHS--------LD  178 (539)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~--------~~  178 (539)
                      .....+.+.+|.  ++..+..+...+....-+..+++|.++|+ +|+++.++++.++..+|.++.+++..        ..
T Consensus         9 iLvlYl~~~lg~--~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~   86 (654)
T TIGR00926         9 ILVLYFLNFLGF--SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL   86 (654)
T ss_pred             HHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence            344556667788  77777888888888888999999999996 79999999999999999988877521        23


Q ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHhcCCCCc---cccchhhhHHHHHHHHHHHHHhcCCCCCC-------cchhHHHHH
Q 009250          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDD-------PHWWRTMLY  248 (539)
Q Consensus       179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-------~~~wr~~f~  248 (539)
                      ..+++-.+..+|.|+.-+...+...|.+++++   |...+.++..+.++|.++++++..++.+.       .+ |...|.
T Consensus        87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~  165 (654)
T TIGR00926        87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFG  165 (654)
T ss_pred             HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHH
Confidence            36677888999999999999999999997643   66788888999999999998888777532       24 999999


Q ss_pred             hhHHHHHHHHHHhc
Q 009250          249 IASLPGFILALGMQ  262 (539)
Q Consensus       249 ~~~~~~~~~~~~~~  262 (539)
                      +.++..++..++..
T Consensus       166 i~~i~m~ia~lvf~  179 (654)
T TIGR00926       166 VPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98888887765543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.97  E-value=7.9e-09  Score=101.47  Aligned_cols=147  Identities=14%  Similarity=0.128  Sum_probs=108.2

Q ss_pred             HHHHHHhCCCCCchhhHHHHHHH-HHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHH---Hhh-hcHHHHHHHH-
Q 009250          111 VSIAKELGFEGNPILEGLVVSIF-IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGR-  184 (539)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~~~r-  184 (539)
                      +.+.+++|+  ++.+.+++.+.. .++..++.++.|++.||+|+|+.+..+.++..+..+..   ++. ++.+.+++.- 
T Consensus       234 ~~l~~~~G~--~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  311 (402)
T PRK11902        234 TFLIRGAGF--SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG  311 (402)
T ss_pred             HHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            456677888  888889887665 45688999999999999999999888777766655443   344 4556555554 


Q ss_pred             ---HHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009250          185 ---FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (539)
Q Consensus       185 ---~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  261 (539)
                         ++.|++.+...+....++.+.+|.++    .++.+...++|..+++.+++.+.+..| |+..|.+.++++++.+++.
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence               45556666667777777777777554    455666667888777778999999888 9999999998888776665


Q ss_pred             ccc
Q 009250          262 QFT  264 (539)
Q Consensus       262 ~~~  264 (539)
                      +..
T Consensus       387 ~~~  389 (402)
T PRK11902        387 WLM  389 (402)
T ss_pred             HHH
Confidence            443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.94  E-value=1.4e-08  Score=98.06  Aligned_cols=162  Identities=14%  Similarity=0.007  Sum_probs=106.5

Q ss_pred             HHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc-----CCchhh-HhhHHHHHHHHHHHHHHh
Q 009250          344 GVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE-----GRQKLL-IGSYLGMAISMLLVVGAT  417 (539)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~~~  417 (539)
                      ......|.+.++.+.+.. +.+..... .+..    .+ .++.|+++||+     |||+.+ ..+.+..++....+.+..
T Consensus         6 ~~~~~~~~~~~~~g~s~~-~~g~~~~~-~~~~----~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~   78 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLK-TIGFFSLV-GLPY----SL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV   78 (356)
T ss_pred             hHHhHHHHHHHHcCCCHH-HHHHHHHH-HHHH----HH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            344567888888888876 34443322 2222    01 78999999998     788864 555555555544544321


Q ss_pred             cCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----
Q 009250          418 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-----  492 (539)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-----  492 (539)
                      .      ..+...+....+..........+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..|     
T Consensus        79 ~------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        79 P------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             c------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            1      11222222222222222233345667888999999999999999999999999999999999988888     


Q ss_pred             ---cchhhHHHHHHHHHHHHhhheeeeCC
Q 009250          493 ---VAPVYAGFGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       493 ---~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (539)
                         |+..|++.+++.++..+..++..+|.
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence               99999888877777665544445554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.94  E-value=5.4e-09  Score=103.87  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=101.2

Q ss_pred             HHhHHHHHHHcCCChh-HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCcc
Q 009250          346 LYFSSLTFQDVGITDG-ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED  424 (539)
Q Consensus       346 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (539)
                      ...++.+.++.|.++. .+......+...+.       .++.|+++|.+|||+.++.+.++..++.++.....       
T Consensus        64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~-------~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-------  129 (599)
T PF06609_consen   64 ASILPYINADIGGSDNWSWFSTAWTLASAVS-------FPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-------  129 (599)
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHH-------HHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-------
Confidence            3345667777776643 23333333333333       88999999999999999999999999988877622       


Q ss_pred             chhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Q 009250          425 FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS  504 (539)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~  504 (539)
                       +....+....+.  +.+.+........++|..|.+.|+.+.++.....-....+++.+...+..+.+|++.|++.++..
T Consensus       130 -~~~~~iag~~l~--GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~  206 (599)
T PF06609_consen  130 -NMNTFIAGMVLY--GVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS  206 (599)
T ss_pred             -cHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence             222233333333  33344444445567899999999887776665544444566777766666678999999888877


Q ss_pred             HHHHHhhheee
Q 009250          505 LLSALFAYYFI  515 (539)
Q Consensus       505 ~~~~~~~~~~~  515 (539)
                      .++.++.+++.
T Consensus       207 ~i~~vl~~~fY  217 (599)
T PF06609_consen  207 GIALVLIFFFY  217 (599)
T ss_pred             HHHHHHHHHHh
Confidence            77665544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.94  E-value=1.4e-08  Score=96.11  Aligned_cols=161  Identities=28%  Similarity=0.461  Sum_probs=130.5

Q ss_pred             HHHhhhhhcccccchhHHHHHHHhCCCCCc--hhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 009250           94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  171 (539)
                      ...+...++........+.+..+++.  +.  .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~   86 (338)
T COG0477           9 LAALLLGLDLGLLSPALPLLLSTLSL--SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL   86 (338)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHcCC--CchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            33344446667777788888888876  44  467999999999999999999999999999998888888777777788


Q ss_pred             Hhhhc--HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCC-CccccchhhhHH-HHHHHHHHHHHhcCCCCCC--cchhHH
Q 009250          172 AQAHS--LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQV-GTCLGIITSLFLGIPAEDD--PHWWRT  245 (539)
Q Consensus       172 ~~a~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~--~~~wr~  245 (539)
                      ++..+  .+.+++.|+++|++.+...+...+++.|++++ ++|+...+.... ...+|..+++.+++.+...  .+ ||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  165 (338)
T COG0477          87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRA  165 (338)
T ss_pred             HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHH
Confidence            77776  89999999999999999999999999999998 678888888888 5778888888777665543  33 999


Q ss_pred             HHHhhHHHHHHH
Q 009250          246 MLYIASLPGFIL  257 (539)
Q Consensus       246 ~f~~~~~~~~~~  257 (539)
                      .|.+........
T Consensus       166 ~~~~~~~~~~~~  177 (338)
T COG0477         166 AFLLAALLGLLL  177 (338)
T ss_pred             HHHHHHHHHHHH
Confidence            777666655444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.1e-07  Score=86.41  Aligned_cols=355  Identities=14%  Similarity=0.073  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHH--HHHhhhhhhhh-----hhcchHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAF--VGSISSGSLAD-----KLGCRRTFQI  159 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~g~l~d-----r~Grr~~l~~  159 (539)
                      ..+..+.+.+.+.+.-.+... .+|.+.+.=|.  |-.+.+.    |.+.+.  .--+.|.++.|     |+||||..++
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~v--Syt~~a~----fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGV--SYTSQAI----FSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCc--chhhhhh----hhhhhhHHHHHHHHHhhhHHHHHHhhccccceee
Confidence            346677777888888888888 89999886677  4433232    222222  33578889999     9999886554


Q ss_pred             -HHHHHHHHHHHHHhh-----------hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHH
Q 009250          160 -DTIPLILGAIISAQA-----------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII  227 (539)
Q Consensus       160 -~~~~~~~~~~~~~~a-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  227 (539)
                       +..+.+..+++.+.-           ++...+...-++.-+..+.-..+.-.+.-....+++.|.+......+...|..
T Consensus       104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf  183 (510)
T KOG3574|consen  104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF  183 (510)
T ss_pred             ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence             555555555554432           33444444556777777778888888888889999999888888888888887


Q ss_pred             HHHHhcCCCCCC-------cc-----h---hHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcc
Q 009250          228 TSLFLGIPAEDD-------PH-----W---WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESE  292 (539)
Q Consensus       228 ~~~~~~~~l~~~-------~~-----~---wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  292 (539)
                      ++..+--.+...       .+     +   -....++.+.+.++.-.++.+..+++...                     
T Consensus       184 L~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~---------------------  242 (510)
T KOG3574|consen  184 LGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES---------------------  242 (510)
T ss_pred             hhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh---------------------
Confidence            776655444330       00     0   11122233333333333333333332100                     


Q ss_pred             hHHHHHHHHHHHHhcCCCCc---chhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHH
Q 009250          293 INKAIEEFQLVIKKDGSDLD---SQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVG  369 (539)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (539)
                                ..++.....+   ...+++++-+..+.........-.    ++.......+.-+-+.|......+.+.  
T Consensus       243 ----------~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~----gf~a~da~t~LkLle~Gv~ke~Lal~~--  306 (510)
T KOG3574|consen  243 ----------VDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKL----GFQAADALTSLKLLEHGVPKEELALIA--  306 (510)
T ss_pred             ----------hhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHH----HhhhhhhccchHHHHcCCChhHheeee--
Confidence                      0001111111   234555555554443333222222    233444455566667787766433332  


Q ss_pred             HHHhcccccccchhhhHHHHhhhcC--Cchh------hHhhHHHHHHHHHHHHHHhcCCC-CccchhhHHHHHHH--HHH
Q 009250          370 VTNFAGLRSEKYCALCASYLMDKEG--RQKL------LIGSYLGMAISMLLVVGATSLPL-DEDFSHNLSILGTL--FYI  438 (539)
Q Consensus       370 ~~~~~~~i~~~~~~~~~g~l~dr~g--~r~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~  438 (539)
                      +..++.       .++.++..-|+.  .|++      +..-+....+...+....+.... +........++.++  .+.
T Consensus       307 v~~~pl-------qI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~  379 (510)
T KOG3574|consen  307 VPLVPL-------QIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFH  379 (510)
T ss_pred             eehhhH-------HHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHh
Confidence            333333       555555555542  2221      11111222222222222222221 11122222222221  122


Q ss_pred             HHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009250          439 FTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG  492 (539)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g  492 (539)
                      .++.........+..+.+.++..-|+-+.+.|+..++|+-.-..+..++.|..+
T Consensus       380 ~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  380 QVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             hhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            222222223345667789999999999999999999999888888888887643

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.89  E-value=4e-09  Score=95.25  Aligned_cols=132  Identities=17%  Similarity=0.171  Sum_probs=98.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCcccc
Q 009250          134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS  213 (539)
Q Consensus       134 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~  213 (539)
                      .+.-..|.++.+.+.||+|||+.+..+.+++++..++.-...+-....+.-|..-++..+.+.+.+.|..|.+|.+-|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            34455789999999999999999999999999999988776543333333333333444567778889999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccch
Q 009250          214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP  268 (539)
Q Consensus       214 ~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p  268 (539)
                      ..|..+...-+|.++.|+++-....+   -..+..+.+...++..+...++|-++
T Consensus       471 gvGtcSsmaRIggI~~p~iA~~~e~s---~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIAMRAELS---TSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHHHHhccc---eeehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999999998322222   23445556666666666666666443

>PRK09848 glucuronide transporter; Provisional

Probab=98.88  E-value=8.2e-09  Score=102.90  Aligned_cols=121  Identities=15%  Similarity=0.090  Sum_probs=97.1

Q ss_pred             HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--cHHHHHHHHHHhhhchh
Q 009250          115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIG  192 (539)
Q Consensus       115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~  192 (539)
                      +.+|.  ++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+  +++.+++..++.|+|.+
T Consensus       257 ~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~  334 (448)
T PRK09848        257 YVLND--TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG  334 (448)
T ss_pred             eecCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            34554  555444545555677888999999999999999999999999888888777754  67777778889999999


Q ss_pred             hhhhhHHHHHHhcCCCC-------ccccchhhhHHHHHHHHHHHHHhcCCCC
Q 009250          193 VNTVLVPIYISEVAPTK-------YRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (539)
Q Consensus       193 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~l~  237 (539)
                      ...+...++..|..+.+       ++|...++.+....+|..+|+.+.+.+.
T Consensus       335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988754       3588899999999999999887776543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.87  E-value=1.4e-08  Score=100.51  Aligned_cols=146  Identities=20%  Similarity=0.133  Sum_probs=119.9

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHH-hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  167 (539)
                      +..+.+..++..+.........+.+.++ +|.   +...+.+..+..++..++.+++++++||+|+|+++..+.++.+++
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~---~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGN---EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG  303 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence            4444555556666666666666666665 443   356688888999999999999999999999999999999999999


Q ss_pred             HHHHHhhh--cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCC-------CccccchhhhHHHHHHHHHHHHHhcCCCC
Q 009250          168 AIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (539)
Q Consensus       168 ~~~~~~a~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~  237 (539)
                      .++..+.+  |.+.+++.-++.|++.+...+...++++|..+.       ++.|...+..+....+|..+++.+.+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  304 FLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            99999886  999999999999999999999999999999873       33478888888888888888887776553

>PTZ00207 hypothetical protein; Provisional

Probab=98.87  E-value=1.1e-07  Score=95.25  Aligned_cols=164  Identities=13%  Similarity=0.109  Sum_probs=104.3

Q ss_pred             hHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC
Q 009250          342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL  421 (539)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  421 (539)
                      .+.+..+.+.+.++.+.+.. ..+.+..+....+     +..++.|++.||+|+|+++.++.++..++.++..+..... 
T Consensus        43 ~y~fsv~s~~L~~~lgls~~-~l~~i~svg~~~g-----~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~-  115 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQR-DLSTITTVGIAVG-----YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV-  115 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence            34556677888888888766 3333334333332     2266789999999999999999999999988877742100 


Q ss_pred             CccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH
Q 009250          422 DEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGF  500 (539)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  500 (539)
                         .....+.+.+.....+.+.+. .+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.
T Consensus       116 ---i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l  190 (591)
T PTZ00207        116 ---IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFL  190 (591)
T ss_pred             ---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence               011222222223333333222 2333445667787 569999999999999999875555555544 3566677777


Q ss_pred             HHHHHHHHHhhheeeeC
Q 009250          501 GGVSLLSALFAYYFIVE  517 (539)
Q Consensus       501 ~~~~~~~~~~~~~~~~~  517 (539)
                      +++.++..++.+.+++.
T Consensus       191 ~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        191 MSFALVVGILAIVFMRL  207 (591)
T ss_pred             HHHHHHHHHHHHhheeC
Confidence            77777766666555543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.86  E-value=1.4e-08  Score=104.31  Aligned_cols=176  Identities=14%  Similarity=0.014  Sum_probs=113.4

Q ss_pred             HHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHH
Q 009250          331 GALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISM  410 (539)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  410 (539)
                      ..+..+.............+.+-++.+.+.. ..+.+.+...+...++    .++.+++.||.+||+.+.++.++.+++.
T Consensus        38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~-~~G~i~s~~~i~~~~~----~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTS-SSGLINGSYEIGNLLL----IIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhhhhhCCCCC-cceeeeehhhHHHHHH----HHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            3333443333334444455666666666554 4555555555554333    8999999999999999999999999998


Q ss_pred             HHHHHHhcCCCC-----------------------c----------------cc--hhhHHHHHHHHHHHHHhcc-cccc
Q 009250          411 LLVVGATSLPLD-----------------------E----------------DF--SHNLSILGTLFYIFTFAIG-AGPV  448 (539)
Q Consensus       411 ~~~~~~~~~~~~-----------------------~----------------~~--~~~~~~~~~~~~~~~~~~~-~~~~  448 (539)
                      +++.+.......                       .                ..  ......+.+.-+..+.+.+ ..+.
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~  192 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL  192 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence            887664211000                       0                00  0012222222333333333 3466


Q ss_pred             cccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh---------------------C-cchhhHHHHHHHHH
Q 009250          449 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF---------------------G-VAPVYAGFGGVSLL  506 (539)
Q Consensus       449 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~---------------------g-~~~~~~~~~~~~~~  506 (539)
                      ..+++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.+                     | |+..|++.+++.++
T Consensus       193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l  272 (633)
T TIGR00805       193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL  272 (633)
T ss_pred             CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999999999999887643                     1 45557777766666


Q ss_pred             HHHhh
Q 009250          507 SALFA  511 (539)
Q Consensus       507 ~~~~~  511 (539)
                      ..+..
T Consensus       273 ~~v~l  277 (633)
T TIGR00805       273 TSIPF  277 (633)
T ss_pred             HHHHH
Confidence            55544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.86  E-value=5.6e-09  Score=98.94  Aligned_cols=142  Identities=18%  Similarity=0.096  Sum_probs=125.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHH
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~  201 (539)
                      ++...|.+.+...+.-++...+..++.+|+|.|+.++++..++.+=-+++++++|.+.+.+.+.+.|+-.+........+
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY  336 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccccchhhh-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009250          202 ISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT  264 (539)
Q Consensus       202 i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  264 (539)
                      +++.+|+|..++...+. +.+.++|..+.+.++|.+.++.| .+..|++.+.+.++..++..+.
T Consensus       337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheee
Confidence            99999999877777774 78899999999999999999998 9999999998887777666553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=4e-09  Score=96.48  Aligned_cols=148  Identities=17%  Similarity=0.133  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH
Q 009250          362 ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF  441 (539)
Q Consensus       362 ~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (539)
                      ...+++++.-.+...+.    .++.|.+.||+|+|..+++|+..+..+.+++.+..        ..+..++.=.+-+.+.
T Consensus       106 ~~iG~LFaskA~~qllv----np~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--------sy~~l~vAR~LQgvgs  173 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLV----NPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--------SYPMLFVARSLQGVGS  173 (464)
T ss_pred             cchhHHHHHHHHHHHHh----cccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--------hhHHHHHHHHHhhhhH
Confidence            35566665555554333    99999999999999999999999999999988832        1122222222333332


Q ss_pred             hcccccccccccccccCccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCC
Q 009250          442 AIGAGPVTGLVIPELSSNRT-RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       442 ~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      +. ......+++++.+|++. |++++|+...+..+|-.++|++.|.+++..|+..+|.+++.++++-.++.++.++.++.
T Consensus       174 A~-~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  174 AF-ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             HH-HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence            22 23445678889998764 79999999999999999999999999999999999999999999998887777765554


Q ss_pred             CC
Q 009250          521 RS  522 (539)
Q Consensus       521 ~~  522 (539)
                      ++
T Consensus       253 ~~  254 (464)
T KOG3764|consen  253 DP  254 (464)
T ss_pred             Cc
Confidence            43

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.85  E-value=6.3e-06  Score=80.46  Aligned_cols=145  Identities=11%  Similarity=-0.037  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCC---CCchhhHHHHHHHHHHHHHH-HhhhhhhhhhhcchHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFE---GNPILEGLVVSIFIAGAFVG-SISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ++.+.+..|+..++.+    .+-.+.+.+.++   .+...+.++-+...+..++. .++.+++++|++|++++-+....+
T Consensus         9 ~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F   84 (472)
T TIGR00769         9 FLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF   84 (472)
T ss_pred             HHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence            4444444444444443    345566776662   23456788888887777766 899999999999999998888888


Q ss_pred             HHHHHHHHhh----h---------------------------cHHHHHHHHHHhhhchhhhhh-hHHHHHHhcCCCCccc
Q 009250          165 ILGAIISAQA----H---------------------------SLDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKYRG  212 (539)
Q Consensus       165 ~~~~~~~~~a----~---------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~  212 (539)
                      ....+++++.    +                           +.|...+.-+...+-...... .-..+..|.++.+|-.
T Consensus        85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak  164 (472)
T TIGR00769        85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK  164 (472)
T ss_pred             HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            7777776665    1                           122333334445554445554 6778899999999999


Q ss_pred             cchhhhHHHHHHHHHHHHHhcCCCC
Q 009250          213 SLGTLCQVGTCLGIITSLFLGIPAE  237 (539)
Q Consensus       213 ~~~~~~~~~~~~G~~~~~~~~~~l~  237 (539)
                      |..+++..+.++|.++++.+..++.
T Consensus       165 Rfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       165 RFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.84  E-value=7.1e-08  Score=92.26  Aligned_cols=158  Identities=14%  Similarity=0.112  Sum_probs=109.6

Q ss_pred             HHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCC
Q 009250          343 NGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD  422 (539)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (539)
                      ....+..|.+.++.+.+.....+.+.+.....-.+.    .+..|+++||+|.|+++..+.+...+..+++++..     
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~----qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----  113 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAV----LVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----  113 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHH----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----
Confidence            345566777888888887643666666655555433    99999999999999999999998888888887731     


Q ss_pred             ccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhh---HH
Q 009250          423 EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVY---AG  499 (539)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~---~~  499 (539)
                           ....+.+.=+..|.+-+.......++...+|+++|+++.|+.+....+|.++++++.+. ...+||+.-.   .+
T Consensus       114 -----Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~I  187 (511)
T TIGR00806       114 -----SVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNII  187 (511)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHH
Confidence                 22222222233333333322567888899999999999999999999999999999998 5567766533   33


Q ss_pred             HHHHHHHHHHhhheeee
Q 009250          500 FGGVSLLSALFAYYFIV  516 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~  516 (539)
                      ..+...++.++. +++|
T Consensus       188 sl~s~~~a~~~a-~~LP  203 (511)
T TIGR00806       188 SLVFMTFSVFLA-LFLK  203 (511)
T ss_pred             HHHHHHHHHHHH-HhCC
Confidence            334444444433 4455

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10133 L-fucose transporter; Provisional

Probab=98.84  E-value=3.1e-08  Score=97.97  Aligned_cols=141  Identities=11%  Similarity=-0.038  Sum_probs=111.2

Q ss_pred             HHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhh
Q 009250          114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV  193 (539)
Q Consensus       114 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~  193 (539)
                      ++.+|.  ++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.. .+..-++.|++.+.
T Consensus       287 ~~~~g~--s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHH
Confidence            456788  888999999999999999999999999999999999999888887777776666643 34567889999999


Q ss_pred             hhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHH
Q 009250          194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (539)
Q Consensus       194 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  259 (539)
                      .+|...+...+..+++ .+.+.++..+ ..+|..++|.+.+.+.+..++-|..|++..+..+..+.
T Consensus       364 i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        364 QYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999998764 6777777764 44677777788777777654357777765555444433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.76  E-value=5.1e-08  Score=92.71  Aligned_cols=124  Identities=12%  Similarity=0.099  Sum_probs=93.7

Q ss_pred             hhhHHHHhhhc-CCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcc
Q 009250          383 ALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR  460 (539)
Q Consensus       383 ~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~  460 (539)
                      .+++||++||+ |+|+.+..+.+++.++.+++....       . .....+...+.....+.|. =+...+++.|++|++
T Consensus        78 ~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~-------~-~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~  149 (498)
T COG3104          78 PIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-------V-SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD  149 (498)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-------c-ccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence            78999999995 999999999999999999987721       0 1111222222222244444 366778888998853


Q ss_pred             --cccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          461 --TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       461 --~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                        +|..++++.+...++|+.++|.+.+++.++.||...|.+.++-..++.+..++.
T Consensus       150 DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         150 DPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             CcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence              578899999999999999999999999999999999988887777776655443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.74  E-value=9.2e-07  Score=83.55  Aligned_cols=135  Identities=18%  Similarity=0.060  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcC
Q 009250          127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA  206 (539)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  206 (539)
                      +.+.-+-.+...+..+.+-+..+|...+.=+..+.+++.++.++.++++|.+.-+++-++.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            44555666677777788888899988666667778889999999999999999999999999999988888887644 55


Q ss_pred             CCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHHHHHHHHHhcccccc
Q 009250          207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVES  267 (539)
Q Consensus       207 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~~  267 (539)
                      ++    ...+.++.+.+.+.++|+..-..+.. .+ .-|..+++...+.++..+..+++.+.
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            54    36788888888888888877655554 33 15777777777666565555554333

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.72  E-value=2.6e-07  Score=84.02  Aligned_cols=157  Identities=17%  Similarity=0.156  Sum_probs=128.8

Q ss_pred             cccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhhcHHHHHH
Q 009250          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (539)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~  182 (539)
                      .+...-+|.+..|-|+  |+.+.|++.+...+.....++..-.+.+|. .+|+..+....++.++.+.+.+.+.-..+..
T Consensus       225 Y~~~~WLP~ili~~G~--sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw  302 (395)
T COG2807         225 YIVIGWLPAILIDRGL--SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW  302 (395)
T ss_pred             HHHHHHHHHHHHHcCC--CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3344567999999999  999999999999999999999999999964 5778888888888888888888876554444


Q ss_pred             HHHHhhhchhhhhhhHHHHHHhcCCCC-ccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009250          183 GRFLVGLGIGVNTVLVPIYISEVAPTK-YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (539)
Q Consensus       183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  261 (539)
                       -++.|+|.|..++.+...+.+..+.. +-++..++.+....+=..+||.+.|++.|..|+|+...+..+...++..+.-
T Consensus       303 -~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         303 -ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             -HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence             49999999999999999999888754 4456666677777777888999999999988889999988887777766555


Q ss_pred             cc
Q 009250          262 QF  263 (539)
Q Consensus       262 ~~  263 (539)
                      +.
T Consensus       382 l~  383 (395)
T COG2807         382 LR  383 (395)
T ss_pred             hh
Confidence            44

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.71  E-value=6.4e-08  Score=97.00  Aligned_cols=116  Identities=16%  Similarity=0.043  Sum_probs=91.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHhhhchhhhhh
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ-----AHSLDEMLWGRFLVGLGIGVNTV  196 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~G~~~~~~~~  196 (539)
                      +....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+     .++.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4445677777777888999999999999999999999888877766665533     34567777788899999999999


Q ss_pred             hHHHHHHhcCC-------CCccccchhhhHHHHHHHHHHHHHhcCCCC
Q 009250          197 LVPIYISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (539)
Q Consensus       197 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~  237 (539)
                      ...++++|..+       .++.|..++......-+|..+++.+.+++.
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999966       233455888888888888888887776654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.68  E-value=8.3e-08  Score=68.20  Aligned_cols=80  Identities=18%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             hhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHH
Q 009250           99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD  178 (539)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~  178 (539)
                      .++.+..+.|.+|.+++|.++  |..+.||+.+..++||.+|.+...++.++..+++.+..+.+...+..+.+++.++.+
T Consensus         4 mGigRFayTplLP~M~~~~~l--s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGL--SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            466778889999999999999  999999999999999999999999999999999999999999999999999998877


Q ss_pred             HH
Q 009250          179 EM  180 (539)
Q Consensus       179 ~l  180 (539)
                      ..
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            54

Note that many members are hypothetical proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=98.65  E-value=3.9e-07  Score=90.75  Aligned_cols=114  Identities=14%  Similarity=0.066  Sum_probs=88.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh--hhcHHHHHHHHHHhhhchhhhhhhHHHHH
Q 009250          125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYI  202 (539)
Q Consensus       125 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--a~~~~~l~~~r~l~G~~~~~~~~~~~~~i  202 (539)
                      ..+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+  .++.+.+++..++.|++.+...+...+++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777888889999999999999999999888776654443333  35677788888999999999999999999


Q ss_pred             HhcCCC-------CccccchhhhHHHHHHHHHHHHHhcCCCCC
Q 009250          203 SEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (539)
Q Consensus       203 ~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~  238 (539)
                      +|..+.       +..|...+..+....+|..+|+.+++.+.+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998862       223556788888888888888888776543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.64  E-value=3.8e-08  Score=93.66  Aligned_cols=164  Identities=18%  Similarity=0.098  Sum_probs=138.6

Q ss_pred             hhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhc
Q 009250           97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS  176 (539)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~  176 (539)
                      ++.+.....+...+---.+|.+-  .+...|.....-..|-.+.-++.+++..++|+-+++.+++.+..+=.+..++.+|
T Consensus       381 v~mG~g~~lv~tFLfWHled~~~--~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n  458 (618)
T KOG3762|consen  381 VVMGAGVGLVFTFLFWHLEDLGG--IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN  458 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCC--cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC
Confidence            33343333333344444566665  6666787888888888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhH-HHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009250          177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (539)
Q Consensus       177 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  255 (539)
                      .|+.+...+++|+..+..+.+..+|+++..|++-|..+.++.+ ...++|-.+|.++|+.+....+ =|..|.+.++.++
T Consensus       459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl  537 (618)
T KOG3762|consen  459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACL  537 (618)
T ss_pred             chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999985 6678999999999999999988 8999999888887


Q ss_pred             HHHHHhcc
Q 009250          256 ILALGMQF  263 (539)
Q Consensus       256 ~~~~~~~~  263 (539)
                      +.+++...
T Consensus       538 ~~l~~~~~  545 (618)
T KOG3762|consen  538 VTLALFIS  545 (618)
T ss_pred             HHHHHHHH
Confidence            77655543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.63  E-value=4.2e-07  Score=89.13  Aligned_cols=142  Identities=19%  Similarity=0.218  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh
Q 009250          363 LASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA  442 (539)
Q Consensus       363 ~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (539)
                      .-+.+.+....+.+++    .+..|++.||+|-|+++..+.++.+++.++.......      ..+  .+..+=+..|++
T Consensus        74 ~k~~i~ss~~~G~i~~----~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~--~~~~~R~lqGl~  141 (466)
T KOG2532|consen   74 EKGLIFSSFFWGYILG----QIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------GFY--LLLVLRFLQGLG  141 (466)
T ss_pred             HHHHHHHHHHHHHHHH----HcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------cch--hhHHHHHHhHHH
Confidence            4555666555555444    9999999999999999999999999998888875431      112  222333333333


Q ss_pred             cc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHhhheeee
Q 009250          443 IG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAPVYAGFGGVSLLSALFAYYFIV  516 (539)
Q Consensus       443 ~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  516 (539)
                      .+ ..|....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++-.++.+++..
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            33 3567778888999999999999999999999999999999999998 99999999999999988877655554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.54  E-value=3.8e-07  Score=81.95  Aligned_cols=357  Identities=15%  Similarity=0.145  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCC
Q 009250          130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK  209 (539)
Q Consensus       130 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  209 (539)
                      .-+..-.+.+.-++.=.+.|-.-.|++++.-.+......++.-+.++.+.+=+.-++.|...+ ...+-++++-+..+++
T Consensus        48 yPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~  126 (433)
T KOG3810|consen   48 YPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPE  126 (433)
T ss_pred             ccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHH
Confidence            345555667777788889999988999988888788888888899999999999999999876 6677788999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHc
Q 009250          210 YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW  288 (539)
Q Consensus       210 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  288 (539)
                      ++.++.+...+..-.|...|..++..+..... .+...-.+......+..+...++|..+|-+.-+.+.++..  ..+..
T Consensus       127 ~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e  204 (433)
T KOG3810|consen  127 MYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLE  204 (433)
T ss_pred             HHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccch
Confidence            99999999999999999999888887765443 1334444444444555566677776654333222222110  00000


Q ss_pred             CCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcC-CChhHHHHHH
Q 009250          289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG-ITDGALASLL  367 (539)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  367 (539)
                      ..+. ..+..+.   .+...........+..++|..    +-..+++....+++.-...|...+.++.. .......+..
T Consensus       205 ~~~~-~~~~~~~---l~~~~~~l~~~l~~~y~np~l----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~v  276 (433)
T KOG3810|consen  205 EMNP-QASYMSY---LRGAFVLLWRDLQECYSNPRL----LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAV  276 (433)
T ss_pred             hcCc-cchhhHH---HHHHHHHHHHHHHHHhcCchh----hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHH
Confidence            0000 0000000   000000001122333444432    22334444455567777778777777663 2233445555


Q ss_pred             HHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccc
Q 009250          368 VGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP  447 (539)
Q Consensus       368 ~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (539)
                      =.+..+.|+++    .+..|++.-.+.|..-+.++..-...+.+++....      ..+.++......++...+.... +
T Consensus       277 eAv~tlLGa~~----~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~------t~~Iw~~Ya~yvlfr~~y~l~i-t  345 (433)
T KOG3810|consen  277 EAVSTLLGAIA----ALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ------TQHIWVCYAGYVLFRVIYQLTI-T  345 (433)
T ss_pred             HHHHHHHHHHH----HHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc------ccceehhhhhHHHHHhhHhhhh-h
Confidence            55556666544    88888887666665433333322222222222211      1123333333333433333322 2


Q ss_pred             ccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----------cchhhHHHHHHHHHHHHhh
Q 009250          448 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-----------VAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       448 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-----------~~~~~~~~~~~~~~~~~~~  511 (539)
                      +....+++....+.-|..+|+..++.-+-..+-..+   +.|..|           |..-|.+.+++.++.....
T Consensus       346 iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~  417 (433)
T KOG3810|consen  346 IATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE  417 (433)
T ss_pred             HHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence            333445555667778999998877655444333322   334322           3334666676666665543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.53  E-value=6.8e-07  Score=77.33  Aligned_cols=100  Identities=20%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             cccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 009250          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG  183 (539)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~  183 (539)
                      -..+|.+-.+-++++.  ...++|.+.-+.+-...+...+.|.++|+-|||+.-+.-++.+.++++ .-.++.|-.++++
T Consensus        54 WLQgPYvYyLYstYgF--gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVG  130 (454)
T KOG4332|consen   54 WLQGPYVYYLYSTYGF--GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVG  130 (454)
T ss_pred             hhcCceeeeeehhcCc--cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeeh
Confidence            3445666666777888  667778877777777888899999999999999987666666655544 3357889999999


Q ss_pred             HHHhhhchhhhhhhHHHHH-HhcC
Q 009250          184 RFLVGLGIGVNTVLVPIYI-SEVA  206 (539)
Q Consensus       184 r~l~G~~~~~~~~~~~~~i-~~~~  206 (539)
                      |.+.|++.+..+.+.-++. .|..
T Consensus       131 R~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  131 RVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999998887764 4544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.50  E-value=2.1e-06  Score=76.25  Aligned_cols=143  Identities=10%  Similarity=0.032  Sum_probs=97.1

Q ss_pred             hhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHh
Q 009250          338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT  417 (539)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  417 (539)
                      ..+..+.+..|.|.+.+..+.++. +...+.....++..+     .++.|.+.|++|.+.++.++.+...++...+....
T Consensus        14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~-~l~~l~~~~~~G~~~-----G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   14 CSGTTYTFSAYSPQLKSRLGYSQS-QLNTLSTAGDIGSYF-----GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             hcCcccchhhhhHHHHHHhCCCHH-HHHHHHHHHHHHhhc-----cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456677899999999998876 444444445554432     58889999999999999999999999998887654


Q ss_pred             cCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009250          418 SLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET  490 (539)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~  490 (539)
                      .-...   ....+....+.+..+.+... .........+.+|. +||++.|+.-....+++++...+...+.+.
T Consensus        88 ~~~i~---~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   88 SGRIP---SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             hCccC---ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            32110   12333344444444433322 22222334477885 599999999999999999988888777654

>TIGR00788 fbt folate/biopterin transporter

Probab=98.50  E-value=3.1e-07  Score=91.52  Aligned_cols=150  Identities=14%  Similarity=0.094  Sum_probs=118.1

Q ss_pred             HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----------hcHHHHHHHH
Q 009250          115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA----------HSLDEMLWGR  184 (539)
Q Consensus       115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------~~~~~l~~~r  184 (539)
                      +.+|.  ++.+.|++.....++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.++..-
T Consensus       281 ~~lG~--s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPG--GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            45677  88899999999999999999999999999999999999999999888665321          3444555667


Q ss_pred             HHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc----h--hHHH-HHhhHHHHHHH
Q 009250          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH----W--WRTM-LYIASLPGFIL  257 (539)
Q Consensus       185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~----~--wr~~-f~~~~~~~~~~  257 (539)
                      ++.+++.+..+.....++.+..|++++|...++.++..++|..+++.+++.+.+..|    .  .++. ..+..+..++.
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~  438 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP  438 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999998887765433    0  2222 22333444444


Q ss_pred             HHHhccccc
Q 009250          258 ALGMQFTVE  266 (539)
Q Consensus       258 ~~~~~~~~~  266 (539)
                      +.+.+++|+
T Consensus       439 l~~~~llP~  447 (468)
T TIGR00788       439 LPLLHLLPR  447 (468)
T ss_pred             HHHHHhCCC
Confidence            444556774

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.49  E-value=5e-07  Score=92.01  Aligned_cols=123  Identities=20%  Similarity=0.122  Sum_probs=93.9

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      .++.|.++||+|||+++..+.++..++.+..++.         .+.......=++.+.+..+.......+..|..++++|
T Consensus       135 ~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R  205 (521)
T KOG0255|consen  135 SLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQR  205 (521)
T ss_pred             HhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchh
Confidence            9999999999999999999999999888777662         2223333333333333444456677888999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCC
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (539)
                      +.+..+ ......++.+++...+++..  +|++.+++.....++..++ +++.+|.
T Consensus       206 ~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  206 GLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            999999 88888999999999998877  8888888877777766655 3444453

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.47  E-value=1e-06  Score=86.62  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=96.5

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      .+.++.+.||++-.+.+....++.++..++-..         ..+...++++-++.+.+..+..|....++...+.+++|
T Consensus        98 ~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---------~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~  168 (495)
T KOG2533|consen   98 QFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---------VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSER  168 (495)
T ss_pred             HhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhh
Confidence            999999999999544444333333222222211         13344455555566666667778888899999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHH------HhCcchhhHHHHHHHHHHHHhhheeeeCCCC
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      +.-+|+.++...+|+++|+.+...+.+      ..||++.|++-+++.++.++++++++|+...
T Consensus       169 g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  169 GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            999999999999999999999988643      4679999999999999999988888876543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.45  E-value=1.9e-06  Score=84.12  Aligned_cols=128  Identities=19%  Similarity=0.148  Sum_probs=102.7

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      ++..|.++||+|||..+........+..+.+.+          ..++..+  .....+.........++++++....+.|
T Consensus        79 s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~----------~~~~~~~--~~~l~g~~~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   79 SPLIGALSDRYGRKVVLLLPLFGTILPALCLLF----------QGYWFFL--LLGLSGGFSAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             HhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH----------HHHHHhh--hcccccchhhhhhhhhhheeeccchhHH
Confidence            899999999999999999888888877777766          2222222  2222222233345667889999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCC
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRS  522 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (539)
                      ....|+.+.....+..++|.+.+.+....|+...+.+..+..++..+....++||+...+
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            999999999999999999999999999999999999999999999888888888875543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.43  E-value=1.1e-05  Score=77.01  Aligned_cols=144  Identities=14%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             HHHHHHHhhhhhcccccchhHHHHHHH--hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhh-----hhcchHHHHH-HH
Q 009250           90 LIASMSNFLFGYHIGVMNGPIVSIAKE--LGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-----KLGCRRTFQI-DT  161 (539)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~-~~  161 (539)
                      .++.+.+++.+.-.+.....+|.+.++  -++  +-.|.+.. |.....+. .-++|.++.|     |+||||..++ .-
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~--sy~q~~~f-Sla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q   78 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKV--SYSQQAIF-SLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ   78 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCC--ChhHheee-eeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence            355667788888888877788888887  455  55554432 11111111 2345555555     8999987665 33


Q ss_pred             HHHHHHHHHHHhhh----------------------c--HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhh
Q 009250          162 IPLILGAIISAQAH----------------------S--LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL  217 (539)
Q Consensus       162 ~~~~~~~~~~~~a~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  217 (539)
                      .+.++..+..+..-                      +  ...+...-++.=+-.+.-..+.-.+.-....+++++.+...
T Consensus        79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc  158 (544)
T PF13000_consen   79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC  158 (544)
T ss_pred             HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence            33344333333221                      0  11223333334344455566666777777888889999888


Q ss_pred             hHHHHHHHHHHHHHhcCCCC
Q 009250          218 CQVGTCLGIITSLFLGIPAE  237 (539)
Q Consensus       218 ~~~~~~~G~~~~~~~~~~l~  237 (539)
                      ...+.+.|..++..+--.+.
T Consensus       159 qtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  159 QTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HHhHhhhhHHHHHHHHHhhC
Confidence            88888888888876655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.43  E-value=2.2e-06  Score=82.51  Aligned_cols=145  Identities=17%  Similarity=0.178  Sum_probs=108.8

Q ss_pred             HHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 009250           91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII  170 (539)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  170 (539)
                      ..++..++.....++.+.....+. ++.++.++....+.......+..++.+++.++.+|+|+|+++.++.++..++.++
T Consensus       240 ~~l~~~l~~~~~~~i~~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~  318 (467)
T COG2211         240 LLLLMNLLLFIAFNIRGSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLL  318 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444433 3455557777778888888888888999999999999999999999999999999


Q ss_pred             HHhhh--cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCC-------CccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          171 SAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       171 ~~~a~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                      .-+.+  +.+.+++..++.++|.+...+...++++|..+-       |.-|...+......=+|..++..+.++.
T Consensus       319 ~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~  393 (467)
T COG2211         319 LYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI  393 (467)
T ss_pred             HHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98876  788888999999999999999999999887653       2236667777777777777776555443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.40  E-value=7.3e-06  Score=66.95  Aligned_cols=108  Identities=10%  Similarity=0.058  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCC
Q 009250          128 LVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP  207 (539)
Q Consensus       128 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  207 (539)
                      .-.++......+++++.+.+.+++|.|+.+++|.+.+.+-.+.. +-++.+.++.+-++.|++.+..+++...++.+...
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            34566667778888899999999999999999999998666554 56788899999999999999999999999999999


Q ss_pred             CCccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          208 TKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       208 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                      +++|++..+++......+.++|.++...+
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888887665433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.39  E-value=4.1e-07  Score=85.22  Aligned_cols=178  Identities=15%  Similarity=0.027  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhh------HHHHH-HHHHHHHHHHhhhhhhhhhhcchHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILE------GLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQI  159 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~  159 (539)
                      +.++..+...|+.-......+.....+.++.++..+....      ..... +-..++..+-.+...+.|+.|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4567777788887777777777888888888873322211      11111 1222333466677889999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcH--------HHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHH
Q 009250          160 DTIPLILGAIISAQAHSL--------DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF  231 (539)
Q Consensus       160 ~~~~~~~~~~~~~~a~~~--------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~  231 (539)
                      |.+++++..+..+...|.        ....+..++.-+|-   ......+-+|.+|.+-|+..-|+..+..-+|.++|..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            999999999999988761        11222334443332   2334456689999999999999999999999999999


Q ss_pred             hcCCCCC-----CcchhHHHHHhhHHHHHHHHHHhcccccch
Q 009250          232 LGIPAED-----DPHWWRTMLYIASLPGFILALGMQFTVESP  268 (539)
Q Consensus       232 ~~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p  268 (539)
                      .-.++.+     ..+ -|+.|++.+...++..+..+++||+.
T Consensus       461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeeccc
Confidence            9888887     555 99999999999999999999999874

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.38  E-value=1.1e-06  Score=84.60  Aligned_cols=151  Identities=15%  Similarity=0.091  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHhcccccccchhhhHHHHhhhcCC-chhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHH
Q 009250          361 GALASLLVGVTNFAGLRSEKYCALCASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIF  439 (539)
Q Consensus       361 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (539)
                      ....+++.+...++.+++    .++.|+...|.+. |+.++.+.+++.++.++.......+     +.+.++..+.-+..
T Consensus        70 ~~ffG~viaa~slg~~i~----~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-----~~~~y~mL~~R~l~  140 (488)
T KOG2325|consen   70 ATFFGLVIAASSLGHAIF----SLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-----NGVKYLMLVARILT  140 (488)
T ss_pred             cchhhHHHHHHHHHHHhc----chhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHc
Confidence            346777777777666555    9999999999886 7888899999999998885544322     22455555555666


Q ss_pred             HHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH-------------hCcchhhHHHHHHHHH
Q 009250          440 TFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-------------FGVAPVYAGFGGVSLL  506 (539)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~-------------~g~~~~~~~~~~~~~~  506 (539)
                      |++.+.....-.|+++..-.+.|.++++..+....+|.++||.+...+...             .-|..+-|+.+.+.++
T Consensus       141 Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~  220 (488)
T KOG2325|consen  141 GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWII  220 (488)
T ss_pred             CcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHH
Confidence            666666677778888877777788999888887777888887665544321             1155677888888888


Q ss_pred             HHHhhheeeeCCCC
Q 009250          507 SALFAYYFIVETKG  520 (539)
Q Consensus       507 ~~~~~~~~~~~~~~  520 (539)
                      ..++...+.+|..+
T Consensus       221 ~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  221 YIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHhheeeccc
Confidence            88877777776543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.37  E-value=2.5e-06  Score=86.49  Aligned_cols=138  Identities=19%  Similarity=0.157  Sum_probs=97.8

Q ss_pred             HHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc
Q 009250          365 SLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG  444 (539)
Q Consensus       365 ~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (539)
                      ..+.+...+.+.++    .++.|+++|++|||+.+.++.+...++.++.....          ....+...=+..+++.|
T Consensus        92 s~~~s~~~lga~~g----~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----------~~~~l~~GR~l~G~g~G  157 (513)
T KOG0254|consen   92 GLLTSILNLGALVG----SLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----------SWYQLIVGRILTGLGVG  157 (513)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHhccchh
Confidence            44455555554444    99999999999999999999999999999888732          23333333333334333


Q ss_pred             c-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhheeeeCC
Q 009250          445 A-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF--GVAPVYAGFGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       445 ~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (539)
                      . ......+.+|..|++.||...+..+....+|..++ .+.+....+.  +|+..+.+..+.+++..+. .++.||.
T Consensus       158 ~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  158 GASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             hhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            3 24455789999999999999999999998777766 6666665553  7887777777666666665 5666654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.36  E-value=8.7e-09  Score=103.01  Aligned_cols=158  Identities=19%  Similarity=0.087  Sum_probs=102.2

Q ss_pred             cchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH--h--h-h-----
Q 009250          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q--A-H-----  175 (539)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--a-~-----  175 (539)
                      .....+.+.+..+.+  ..  -+......+...++.++...+.||+|||++++.+.++.+++.+..+  .  . +     
T Consensus       272 ~~~~~~~i~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  272 IFYYSPSIFENAGIS--NS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccc--cc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            334456667777763  33  1222233344556777777999999999999999999888888775  1  1 1     


Q ss_pred             cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009250          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (539)
Q Consensus       176 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  255 (539)
                      ++..+.......-....+..+....+..|.+|.+.|+++.++......++..+++.+...+.+..+ -...|++.+..++
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~  426 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCL  426 (451)
T ss_pred             ccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHH
Confidence            122222222111111213456666788999999999999999999999999998888877776554 2344555555444


Q ss_pred             HHH-HHhcccccch
Q 009250          256 ILA-LGMQFTVESP  268 (539)
Q Consensus       256 ~~~-~~~~~~~~~p  268 (539)
                      +.. +...++||+.
T Consensus       427 i~~i~~~~~lpET~  440 (451)
T PF00083_consen  427 IAIIFVYFFLPETK  440 (451)
T ss_pred             HHHhheeEEEeeCC
Confidence            444 4556688873

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.33  E-value=1.3e-05  Score=79.99  Aligned_cols=114  Identities=15%  Similarity=0.006  Sum_probs=75.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhc--HHHHHHHHHHhhhchhhhhhhHHH
Q 009250          123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS--LDEMLWGRFLVGLGIGVNTVLVPI  200 (539)
Q Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--~~~l~~~r~l~G~~~~~~~~~~~~  200 (539)
                      +...+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++  ...+++.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334467788888999999999999999999999887665555554444433322  334455567778887777777777


Q ss_pred             HHHhcCCC-------CccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          201 YISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       201 ~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                      ++.|..+.       ++-|..++......-+|..+++.+++.+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777662       2224445665566666766666555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.32  E-value=6e-06  Score=76.59  Aligned_cols=166  Identities=18%  Similarity=0.162  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHH-hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  165 (539)
                      +.+....++.|+..-........++.+.+| .|+  ++.+.+...+.+..+..+|.++..++..|+...|.+.+..++..
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~--~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i  313 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGL--NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI  313 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            345555666666666666667777777777 566  88888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009250          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (539)
Q Consensus       166 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~  245 (539)
                      +-++..+++++...+ .+-++.|+..+..+|...+...+..+ + .....+..-....+|..+-|.+-|++.+..+ -..
T Consensus       314 ll~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~  389 (422)
T COG0738         314 LLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQL  389 (422)
T ss_pred             HHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhh-hHH
Confidence            999999999995544 45678899999999999999999998 3 3444445556677888888999999999888 666


Q ss_pred             HHHhhHHHHHHHH
Q 009250          246 MLYIASLPGFILA  258 (539)
Q Consensus       246 ~f~~~~~~~~~~~  258 (539)
                      .+.....++.+..
T Consensus       390 ~~~~~pllc~lyV  402 (422)
T COG0738         390 TFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHHH
Confidence            6664444444333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.28  E-value=4.7e-05  Score=76.59  Aligned_cols=156  Identities=16%  Similarity=0.120  Sum_probs=123.4

Q ss_pred             cccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhcH-----
Q 009250          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLILGAIISAQAHSL-----  177 (539)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~-----  177 (539)
                      ++....+..+.++++.  +...+.-..+.+.-......+..+.++|- +||-+++.++.++..++..+..++...     
T Consensus        55 g~~~nlv~ylt~~~~~--~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHA--SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             cchhHHHHHHHHHhcc--chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            4456777889999998  55666777888888888889999999997 589899999999988886655543211     


Q ss_pred             --------------------HHHHHHHHHhhhchhhhhhhHHHHHHhcCC---CCc---cccchhhhHHHHHHHHHHHHH
Q 009250          178 --------------------DEMLWGRFLVGLGIGVNTVLVPIYISEVAP---TKY---RGSLGTLCQVGTCLGIITSLF  231 (539)
Q Consensus       178 --------------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~  231 (539)
                                          ..++.+.-+..+|.|+.-+...++-+|-++   +++   +...+.++....++|..++..
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence                                246667778888999999999999999998   322   246788889999999999999


Q ss_pred             hcCCCCCCcchhHHHHHhhHHHHHHHHHHhc
Q 009250          232 LGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (539)
Q Consensus       232 ~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  262 (539)
                      +-.+..++.+ |.+-|.+..+..+++.++.+
T Consensus       213 ~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  213 VLVYIQDNVG-WKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             HHHhhhhccc-ceeeccHHHHHHHHHHHHHH
Confidence            9888877777 99999988877776655443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.26  E-value=2.9e-05  Score=72.83  Aligned_cols=149  Identities=17%  Similarity=0.146  Sum_probs=122.8

Q ss_pred             HHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhh-hhcchHHHHHHHHHHHHHHHHHHh---hhcHHHHHHHHHH
Q 009250          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-KLGCRRTFQIDTIPLILGAIISAQ---AHSLDEMLWGRFL  186 (539)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l  186 (539)
                      |+=.+-||+  +..+...+...+..|..++....|++.. |.++|+.-.+++.+..++..+..+   ..+.+.+...-++
T Consensus       233 Pygg~Vfgm--sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  233 PYGGEVFGM--SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             CchhHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            444566888  8888899999999999999999999877 678888888888888777666544   4678889999999


Q ss_pred             hhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC---------CcchhHHHHHhhHHHHHHH
Q 009250          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---------DPHWWRTMLYIASLPGFIL  257 (539)
Q Consensus       187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---------~~~~wr~~f~~~~~~~~~~  257 (539)
                      .|++.|.......+...|...+++.|.++|.|.....+...++..+|+.+.|         ...+|-.+|.+.++..++.
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a  390 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA  390 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888876543         1223778888887777766


Q ss_pred             HHHh
Q 009250          258 ALGM  261 (539)
Q Consensus       258 ~~~~  261 (539)
                      +.+.
T Consensus       391 ~~ll  394 (403)
T PF03209_consen  391 LVLL  394 (403)
T ss_pred             HHHH
Confidence            6544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.16  E-value=7.6e-06  Score=57.96  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=58.5

Q ss_pred             HHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ...+++.....+...|.+|...++.|+  ++.++|.+.++..+...++++++|.++||+++++.++....++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl--~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGL--SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            334455555667777888888888899  9999999999999999999999999999999998887766554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.05  E-value=6.3e-05  Score=72.90  Aligned_cols=108  Identities=17%  Similarity=0.163  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhh--h-c------HHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCC---ccccchhhhHHHH
Q 009250          155 RTFQIDTIPLILGAIISAQA--H-S------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK---YRGSLGTLCQVGT  222 (539)
Q Consensus       155 ~~l~~~~~~~~~~~~~~~~a--~-~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  222 (539)
                      |+++++.++..+|.++..++  + +      .+.++++-++.++|.|+.-|...++++|.++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57888999999999985443  2 2      267899999999999999999999999999876   3567888999999


Q ss_pred             HHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc
Q 009250          223 CLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (539)
Q Consensus       223 ~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  263 (539)
                      ++|..++..+.+++.++.+ |.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999998888 999999999888877665544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=98.01  E-value=0.0011  Score=62.52  Aligned_cols=167  Identities=11%  Similarity=-0.077  Sum_probs=80.9

Q ss_pred             hhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhh----hhhhhhhcchHHHHHHHHHHHHHHHHHH
Q 009250           97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISS----GSLADKLGCRRTFQIDTIPLILGAIISA  172 (539)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~  172 (539)
                      +-.-+..+.+....+++.+++-....   .......+.+...+..++.    ..+.-|. |+++.....+...+..+.+.
T Consensus        28 iG~LlpWN~fiTa~~y~~~~~~~~~~---~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~  103 (406)
T KOG1479|consen   28 IGTLLPWNMFITASDYYYYRFPGYHN---SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLD  103 (406)
T ss_pred             cccccchHhhhccHHHHHhhcCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            33344566666777888877754222   2334444444444444444    4444442 11221111111222222222


Q ss_pred             hh---------hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009250          173 QA---------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (539)
Q Consensus       173 ~a---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w  243 (539)
                      ++         ..+...++.-.+.|++.|..........++ +|++.-+..++=.+.++.+-.++.-.......+...+=
T Consensus       104 ~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA  182 (406)
T KOG1479|consen  104 LALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSA  182 (406)
T ss_pred             HHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCcee
Confidence            22         346667777888888888777777766555 46564333333223333333333333333333332223


Q ss_pred             HHHHHhhHHHHHHHHHHhcccccch
Q 009250          244 RTMLYIASLPGFILALGMQFTVESP  268 (539)
Q Consensus       244 r~~f~~~~~~~~~~~~~~~~~~~~p  268 (539)
                      ...|.+..++.+++.++...+++.|
T Consensus       183 ~~yF~~s~~~~llC~i~y~~l~~lp  207 (406)
T KOG1479|consen  183 LIYFITSTVILLLCFVLYLVLPKLP  207 (406)
T ss_pred             ehhHHHHHHHHHHHHHHHHHhhcch
Confidence            3445555666666666666666665

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.99  E-value=0.0018  Score=63.94  Aligned_cols=149  Identities=15%  Similarity=0.065  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCC-CCchhhHHHHHHHHH-HHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      ++.++.+.+..|+..++.++.    -.+.+.+=++ .++..+.++-....+ ...+...+..+++++++|.+++-+....
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~   98 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            334555555556655555332    2222222110 133344555554444 3345677899999999999998887777


Q ss_pred             HHHHHHHHHhh---------hc----------------------HHHHHHHHHHhhhchhhhhh-hHHHHHHhcCCCCcc
Q 009250          164 LILGAIISAQA---------HS----------------------LDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKYR  211 (539)
Q Consensus       164 ~~~~~~~~~~a---------~~----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r  211 (539)
                      +.....++++.         ++                      .|.+.+.-++.-+-.....+ .-..+..|.++.+|-
T Consensus        99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA  178 (491)
T PF03219_consen   99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA  178 (491)
T ss_pred             HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            77666666653         11                      11122222222232233333 356788999999999


Q ss_pred             ccchhhhHHHHHHHHHHHHHhcCCCCC
Q 009250          212 GSLGTLCQVGTCLGIITSLFLGIPAED  238 (539)
Q Consensus       212 ~~~~~~~~~~~~~G~~~~~~~~~~l~~  238 (539)
                      .|..+++..+.++|.++++.+..++.+
T Consensus       179 KRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  179 KRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888777766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.98  E-value=0.0032  Score=60.47  Aligned_cols=173  Identities=12%  Similarity=0.008  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHhCCC-CCchhhHHHHHHHHH-HHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q 009250           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (539)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  164 (539)
                      ..+.-+.+..++..++.+    .+-.+.+.+.++ .++..+.++-+.+-+ +..+..++.+++.+++.+.+++-+.+..+
T Consensus        27 ~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F  102 (509)
T COG3202          27 KKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFF  102 (509)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            334444444455555543    344556666553 355566788887777 66788999999999999999998888888


Q ss_pred             HHHHHHHHhh---------hc-----------------------HHHHHHHHHHhhhchhhhhh-hHHHHHHhcCCCCcc
Q 009250          165 ILGAIISAQA---------HS-----------------------LDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKYR  211 (539)
Q Consensus       165 ~~~~~~~~~a---------~~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r  211 (539)
                      ....+++++.         ++                       .|...+.-.+.-+-...... .-.....|....+|-
T Consensus       103 ~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ea  182 (509)
T COG3202         103 LGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEA  182 (509)
T ss_pred             HHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            8888877764         11                       02222222222222222222 445667888998999


Q ss_pred             ccchhhhHHHHHHHHHHHHHhcCCCCCCcch---------hHHHHHhhHHHHHHHHHHhcc
Q 009250          212 GSLGTLCQVGTCLGIITSLFLGIPAEDDPHW---------WRTMLYIASLPGFILALGMQF  263 (539)
Q Consensus       212 ~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~---------wr~~f~~~~~~~~~~~~~~~~  263 (539)
                      .|..++++.+.+++..++..+..++.++...         -+..+.+.++.+++++.+..+
T Consensus       183 kRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~  243 (509)
T COG3202         183 KRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRY  243 (509)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888774432         333444444444444444433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.96  E-value=0.00033  Score=64.79  Aligned_cols=159  Identities=13%  Similarity=0.075  Sum_probs=89.8

Q ss_pred             hHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchh
Q 009250          348 FSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSH  427 (539)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (539)
                      |.-.+.++.++... +...++..+.....+.    ..+.|.++||+|||+.-+...++..++++..-.         .+.
T Consensus        56 Y~Y~LY~~yg~~~~-qIa~Lf~~Gf~Ss~i~----g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------~~~  121 (354)
T PF05631_consen   56 YLYALYESYGFSEH-QIAILFVAGFASSAIF----GTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------SNY  121 (354)
T ss_pred             hhHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------ccc
Confidence            33344567777765 4445555555544333    889999999999999888888888887765432         011


Q ss_pred             hHHHHHHHHHHHHHhccccccccccccc----ccCcccccchhhHHHHH-HHHHHHHHHHHHHHHHHHhCc--chhhHHH
Q 009250          428 NLSILGTLFYIFTFAIGAGPVTGLVIPE----LSSNRTRGKIMGFSFSV-HWVCNFLVGLFFLDLVETFGV--APVYAGF  500 (539)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~l~~~~g~--~~~~~~~  500 (539)
                      ...++.-++.+.....-....-.-++.|    -+|++..+..++..... +.+..+.+..+...+.+..|.  ..+|...
T Consensus       122 ~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a  201 (354)
T PF05631_consen  122 PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA  201 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence            2222222222222221111111122333    34555455555554423 334455566666666776654  7788888


Q ss_pred             HHHHHHHHHhhheeeeCCCC
Q 009250          501 GGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~  520 (539)
                      ..+++++.++.....+|..+
T Consensus       202 ~~~l~~~~~~I~~~W~ENyg  221 (354)
T PF05631_consen  202 IVLLAVAAVLILKTWPENYG  221 (354)
T ss_pred             HHHHHHHHHHHHhcccccCC
Confidence            88888877776656666544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.94  E-value=0.00025  Score=72.87  Aligned_cols=129  Identities=11%  Similarity=0.054  Sum_probs=85.4

Q ss_pred             hhhHHHHhhh-cCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcc
Q 009250          383 ALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNR  460 (539)
Q Consensus       383 ~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~  460 (539)
                      .+++|+++|+ +|+++.+.++.++..++..++.+... +...+... .......+.....+.+ +-|...+...|.++++
T Consensus        40 pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~~~~~-~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~  117 (654)
T TIGR00926        40 PLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSGHPLH-DLLDLLGLALIALGTGGIKPCVSAFGGDQFEER  117 (654)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cccccchH-HHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence            7889999996 69999999999988888877765321 11000111 1112222222333333 3466667777777643


Q ss_pred             ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHh-------CcchhhHHHHHHHHHHHHhhhe
Q 009250          461 ---TRGKIMGFSFSVHWVCNFLVGLFFLDLVETF-------GVAPVYAGFGGVSLLSALFAYY  513 (539)
Q Consensus       461 ---~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~  513 (539)
                         .+...+.+.+...++|+.+++.+.+++.+..       +|...|.+.+++.+++.++...
T Consensus       118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       118 QLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence               3677888888999999999999999887553       5777888777777777665443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.76  E-value=0.0011  Score=64.99  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=32.9

Q ss_pred             HHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          436 FYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       436 ~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      .+.+++..|+ ......+..+..++++|..+..+...+..+|-.+|..+.
T Consensus       379 ~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       379 MLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             HHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555544 345556677778888888888888777777777776553

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.59  E-value=0.00077  Score=66.46  Aligned_cols=157  Identities=19%  Similarity=0.269  Sum_probs=98.3

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcC-----CchhhHhhHHHHHHHHHHHHHHhcCCCCcc
Q 009250          350 SLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEG-----RQKLLIGSYLGMAISMLLVVGATSLPLDED  424 (539)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (539)
                      +++.++.+.+.. .......+..++-.     ..++.|.++|-+.     ||..++++.++..++.+.+......     
T Consensus        14 ~~l~~~l~ls~~-~~~~~~~~~~lPw~-----~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-----   82 (433)
T PF03092_consen   14 PFLKDDLGLSPA-QLQRLSSLASLPWS-----IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-----   82 (433)
T ss_pred             HHHHHHcCCCHH-HHHHHHHHHhCchH-----HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-----
Confidence            445566777665 44455555555441     2789999999863     4555666666665555555553321     


Q ss_pred             chhhHHHHHHHHHHHHHhcccc-cccccccccccC--cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Q 009250          425 FSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSS--NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG  501 (539)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p--~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  501 (539)
                       .........+++...++.... ...-+...|...  ++.+|...+.......+|++++..+.|.+.+..+++..|.+.+
T Consensus        83 -~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen   83 -ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             -cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence             112222222223333332222 233455556553  2237788888888999999999999999999999999998888


Q ss_pred             HHHHHHHHhhheeeeCC
Q 009250          502 GVSLLSALFAYYFIVET  518 (539)
Q Consensus       502 ~~~~~~~~~~~~~~~~~  518 (539)
                      .+..+..+..+.+.+|+
T Consensus       162 ~~~~l~~~~~~~~~~e~  178 (433)
T PF03092_consen  162 ALPLLMLIVALFLLEER  178 (433)
T ss_pred             HHHHHHHHHHHHhhhhc
Confidence            87777766666666653

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.46  E-value=0.0024  Score=56.17  Aligned_cols=55  Identities=20%  Similarity=0.167  Sum_probs=38.4

Q ss_pred             CccccchhhhHHHHHHHHHHHHHhcCCCCC-----CcchhHHHHHhhHHHHHHHHHHhccc
Q 009250          209 KYRGSLGTLCQVGTCLGIITSLFLGIPAED-----DPHWWRTMLYIASLPGFILALGMQFT  264 (539)
Q Consensus       209 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~  264 (539)
                      |+|+....+...+.++|.++....--...+     ..+ |++++.+.+++.++-+++...+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~-W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNN-WQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            678888888889999998887544222211     223 9999999988887776655544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.38  E-value=0.00046  Score=65.61  Aligned_cols=141  Identities=18%  Similarity=0.112  Sum_probs=93.6

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH--H-
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL--I-  165 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~-  165 (539)
                      ++-+.+.++..++....+.+.+.. ..++.-  ...+..+...+|.+|..++.--...+  |+  |++.+...+-.  . 
T Consensus       249 miPL~lVY~aEY~InqGv~~tl~f-p~~~~~--~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~  321 (402)
T PF02487_consen  249 MIPLFLVYFAEYFINQGVAPTLLF-PNSFFS--PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLV  321 (402)
T ss_pred             HHHHHHHHHHHHHHHhchHHHhcC-CccCCC--HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHH
Confidence            334455555555554444333311 111221  34566788888888877764432221  33  33333332222  2 


Q ss_pred             --HHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCC
Q 009250          166 --LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (539)
Q Consensus       166 --~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l  236 (539)
                        +.....-+.++.|.+++.-+..|+..|..++.....+.|-.++++|-.+++..+.+-++|..++.+++..+
T Consensus       322 ~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  322 FLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence              22223335689999999999999999999999999999999999999999999999999999999888654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.26  E-value=0.0015  Score=46.30  Aligned_cols=64  Identities=19%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             hhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHH
Q 009250          337 QQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLG  405 (539)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~  405 (539)
                      ..++......-|.+.++++.|.+.. +.+.+.++..+...++    .+++|+++||.++++........
T Consensus        11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~-~iGil~~i~~~~~~~~----~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   11 FYFAALGCLYPFLPLYLKQLGLSPS-QIGILSAIRPLIRFLA----PPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHhhhhHhhhhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHCccHHHHHHHHH
Confidence            3344566677788899998888766 7777777777776555    99999999999999877655443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.14  E-value=0.0061  Score=57.99  Aligned_cols=117  Identities=13%  Similarity=-0.030  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh
Q 009250          363 LASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA  442 (539)
Q Consensus       363 ~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (539)
                      +...++.+..+..       .+.+-|+.||+|-|....++..+..++..+=.....-.    .++...- .+...+....
T Consensus        83 wlsmIym~v~vp~-------gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~----v~~~f~~-~l~~~Gq~ia  150 (480)
T KOG2563|consen   83 WLSMIYMVVSVPF-------GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF----VPPLFRR-PLTHTGQSIA  150 (480)
T ss_pred             HHHHHHHHHHHHH-------hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc----ccccchh-hhhHHhHHHH
Confidence            4455555666655       88999999999999999999999988877665532210    1111111 1111111111


Q ss_pred             ccccccc----ccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009250          443 IGAGPVT----GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF  491 (539)
Q Consensus       443 ~~~~~~~----~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~  491 (539)
                      ....+..    .-...--+|+++|+++..+..+...+|.+++-.+-..+..+.
T Consensus       151 a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  151 AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            1111111    122334588999999999999998899988887777666443

>PRK03612 spermidine synthase; Provisional

Probab=97.14  E-value=0.013  Score=59.08  Aligned_cols=135  Identities=19%  Similarity=0.021  Sum_probs=80.8

Q ss_pred             HHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHH-HHHHHH-HHHHHH----HhhhcH-HHHHHHHHHh
Q 009250          115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLI-LGAIIS----AQAHSL-DEMLWGRFLV  187 (539)
Q Consensus       115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~-~~~~~~----~~a~~~-~~l~~~r~l~  187 (539)
                      --+|-  +..+.+.+.+++++|.++|+.+.+++.++--++...+- +..+.+ ++..+.    ++...+ ..++..-++.
T Consensus        43 ~~~G~--s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         43 YLLGD--SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHhCc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455  77788999999999999999999988744333322111 111111 111111    111111 1223445677


Q ss_pred             hhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC-CcchhHHHHHhhHH
Q 009250          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DPHWWRTMLYIASL  252 (539)
Q Consensus       188 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~~wr~~f~~~~~  252 (539)
                      |+..|+..|....+..+... ++-+...|-......+|.++|.++.+++.- ..|..+..+++.++
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l  185 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL  185 (521)
T ss_pred             HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            88888888887777665432 234567788888889999999888776543 45535555544433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.06  E-value=0.014  Score=47.95  Aligned_cols=95  Identities=19%  Similarity=0.202  Sum_probs=64.1

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      .++.+.+.+++|.|+.+.++.+...+-...... +        ..+..+....+.+.+.+. .+.....++.+...++.+
T Consensus        54 ~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~--------~~~~l~~~s~l~G~~~a~-lW~aqg~ylt~~s~~~~~  123 (156)
T PF05978_consen   54 CLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-P--------NSYTLYPASALLGFGAAL-LWTAQGTYLTSYSTEETI  123 (156)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-h--------hHHHHHHHHHHHhhhhHH-hhHhhhHHHHHcCCHHHH
Confidence            788889999999999999988877755544432 0        222223333333333332 344445677788888889


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHH
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDL  487 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l  487 (539)
                      ++..|+...+.+.+.++|..+.-.+
T Consensus       124 ~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  124 GRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888877665544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.02  E-value=0.018  Score=56.03  Aligned_cols=149  Identities=19%  Similarity=0.160  Sum_probs=108.3

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      .+...++..+.+++.-.+......+...-|+  ++..+|..-+...+....+.+...++.+|+|..+.=+++...-.+..
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~--s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGY--SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            4444555555555544456666666666688  99999999999999999999999999999999888777766544433


Q ss_pred             HHHHh---h---h----cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCC
Q 009250          169 IISAQ---A---H----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (539)
Q Consensus       169 ~~~~~---a---~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~  238 (539)
                      .++..   .   +    +...++.+-.+.=+|.=....+..-++.|..|+++||...|.-....++--++...++-.+.+
T Consensus       338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~  417 (432)
T PF06963_consen  338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR  417 (432)
T ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            33332   2   2    233344444555555556777888899999999999999999999888888888877765554


Q ss_pred             C
Q 009250          239 D  239 (539)
Q Consensus       239 ~  239 (539)
                      .
T Consensus       418 P  418 (432)
T PF06963_consen  418 P  418 (432)
T ss_pred             h
Confidence            3

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.16  Score=49.58  Aligned_cols=105  Identities=17%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhh---hhcchHHHHHHHHHHHHHHHHHHhh------------------hcHHHHHHHHHHhh
Q 009250          130 VSIFIAGAFVGSISSGSLAD---KLGCRRTFQIDTIPLILGAIISAQA------------------HSLDEMLWGRFLVG  188 (539)
Q Consensus       130 ~s~~~~~~~~~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~a------------------~~~~~l~~~r~l~G  188 (539)
                      .-.-.+|..+++.+.+.+++   ++||++.+.++.++..++.++.-..                  +++...++.-++.|
T Consensus       285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence            33344444455555666664   5899999999999988888877653                  24566778889999


Q ss_pred             hchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCC
Q 009250          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (539)
Q Consensus       189 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  235 (539)
                      ++-+......+.++.+.+ +++|..+.++.-.-..++..++......
T Consensus       365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999 4558888888888788877776555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.43  E-value=0.063  Score=52.99  Aligned_cols=106  Identities=8%  Similarity=-0.094  Sum_probs=69.4

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccc-----------------h------hhHHHHHHHHHHH
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF-----------------S------HNLSILGTLFYIF  439 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~  439 (539)
                      .++.+++++|++|++++..........++++.+... +..+..                 .      ..+......+..-
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~-p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~e  139 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIY-PLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAE  139 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHh-cchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHH
Confidence            677899999999999877766666655555554421 100000                 0      0111111222222


Q ss_pred             HHhccccc-ccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009250          440 TFAIGAGP-VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE  489 (539)
Q Consensus       440 ~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~  489 (539)
                      .++....+ +.+...+|.+..++..+-.++....+++|..+++.+..++.+
T Consensus       140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22332333 677889999999999999999999999999999999888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.11  E-value=0.019  Score=55.67  Aligned_cols=117  Identities=9%  Similarity=0.023  Sum_probs=75.5

Q ss_pred             hhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcc---cccchhhHHHHH
Q 009250          397 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR---TRGKIMGFSFSV  472 (539)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~---~~~~~~g~~~~~  472 (539)
                      +.+.++.++..++.+++.+.......++ ......+...+...+.+.|. =|...++..|.++++   .+.+.+..++..
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~-~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPS-GIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhh-hHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            4567788888888888655443221111 11112222222233333333 366777788888765   466777888999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          473 HWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       473 ~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      .++|..++..+.+++.++.||...|.+.++..+++.+..+.-
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999888888877765443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.91  E-value=0.0018  Score=60.75  Aligned_cols=52  Identities=15%  Similarity=0.098  Sum_probs=2.4

Q ss_pred             HHHHHHHHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          433 GTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       433 ~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      .+..+.+++..|+ ......+..+..++++|..+..+......+|-.+|..+.
T Consensus       252 ~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  252 IILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             ---------------HHHH----------------------------------
T ss_pred             HHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555 455666777888888888887777777777776666543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.87  E-value=0.0023  Score=64.64  Aligned_cols=162  Identities=16%  Similarity=0.074  Sum_probs=1.2

Q ss_pred             HhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCc---
Q 009250          347 YFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE---  423 (539)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---  423 (539)
                      ...+.+-++++.++. ..+.+.+...+...+.    .++..++.+|..|-+.+..+.++++++.+++.+-.......   
T Consensus        24 ~~lttiErRF~l~S~-~~G~i~s~~di~~~~~----~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~   98 (539)
T PF03137_consen   24 SSLTTIERRFGLSSS-QSGLISSSYDIGSLVV----VLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE   98 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence            334444455555444 7777777777777555    67777888887777888888888888888776532211000   


Q ss_pred             -----------------------------------cchhhHHHHHHHHHHHHHhccc---ccccccccccccCcccccch
Q 009250          424 -----------------------------------DFSHNLSILGTLFYIFTFAIGA---GPVTGLVIPELSSNRTRGKI  465 (539)
Q Consensus       424 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~  465 (539)
                                                         ....+.....+++.....++|.   .++..+|+.|..+++..+..
T Consensus        99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splY  178 (539)
T PF03137_consen   99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLY  178 (539)
T ss_dssp             -----------------------------------------------------SSS------------------------
T ss_pred             cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccc
Confidence                                               0011111222222222333333   45666889999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH---------------------hC-cchhhHHHHHHHHHHHHhhhe
Q 009250          466 MGFSFSVHWVCNFLVGLFFLDLVET---------------------FG-VAPVYAGFGGVSLLSALFAYY  513 (539)
Q Consensus       466 ~g~~~~~~~~g~~~~~~~~~~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~  513 (539)
                      .|+...+..+|-++|-.+.+.....                     .| |...|++.+.+.++..+....
T Consensus       179 iGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  179 IGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             hhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999888888777766654421                     12 445566666666665554433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.85  E-value=0.091  Score=50.42  Aligned_cols=123  Identities=22%  Similarity=0.120  Sum_probs=75.4

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccc
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR  462 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  462 (539)
                      .+....+.|.++.|++++++.+...+...++.+..        ......+.-++.  +.....-...++++=...|+++-
T Consensus        58 l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--------sv~~mq~~q~~y--g~~~a~evay~sYiys~v~~~~y  127 (412)
T PF01770_consen   58 LLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--------SVLAMQLMQFFY--GLATAAEVAYYSYIYSVVDKEHY  127 (412)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--------cHHHHHHHHHHH--HHHHHHHHHHHHHheeecCHHHH
Confidence            66777899999999999988888777777766521        112222222222  22222233444556566677777


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHhhheeee
Q 009250          463 GKIMGFSFSVHWVCNFLVGLFFLDLVETFG--VAPVYAGFGGVSLLSALFAYYFIV  516 (539)
Q Consensus       463 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~  516 (539)
                      -++.+......-+|.+++..++-.+....+  +.....+..+...++.++. +++|
T Consensus       128 q~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~fLP  182 (412)
T PF01770_consen  128 QKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA-LFLP  182 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHcC
Confidence            888998888888888888888776666433  3333344444444444433 3344

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.82  E-value=0.12  Score=53.21  Aligned_cols=165  Identities=15%  Similarity=0.094  Sum_probs=101.2

Q ss_pred             hHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCC------
Q 009250          348 FSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL------  421 (539)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~------  421 (539)
                      ..+.+-+.++..+. ..+++.+...+...+.    .....+...|..|-+++-+|.++++++.++..+-..+..      
T Consensus       119 ~IttiErRF~i~Ss-~sG~I~s~~dig~~l~----i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~  193 (735)
T KOG3626|consen  119 VITTIERRFKISSS-QSGLIASSYDIGNLLL----IIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL  193 (735)
T ss_pred             hhhhhhhhcCCCCC-cceeEeeecccchhhh----hHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence            33444444555544 4555555444444322    667777778888888899999999998888765311100      


Q ss_pred             ---------C----------------------c---cchhhHHHHHHHHHHHHHhccc---ccccccccccccCcccccc
Q 009250          422 ---------D----------------------E---DFSHNLSILGTLFYIFTFAIGA---GPVTGLVIPELSSNRTRGK  464 (539)
Q Consensus       422 ---------~----------------------~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~  464 (539)
                               +                      .   ...+...++.+++..+..++|.   .++..+|+.|...++....
T Consensus       194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl  273 (735)
T KOG3626|consen  194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL  273 (735)
T ss_pred             hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence                     0                      0   0112223333333334444444   4566688889988888899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH------------------hC-cchhhHHHHHHHHHHHHhhheeeeCC
Q 009250          465 IMGFSFSVHWVCNFLVGLFFLDLVET------------------FG-VAPVYAGFGGVSLLSALFAYYFIVET  518 (539)
Q Consensus       465 ~~g~~~~~~~~g~~~~~~~~~~l~~~------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (539)
                      ..|+.+++..+|-++|-.+.+.....                  .| |...|++.+++.++..+..+ +.|+.
T Consensus       274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f-~fPk~  345 (735)
T KOG3626|consen  274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF-FFPKE  345 (735)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hCccc
Confidence            99999999988888887777766532                  12 45557777777777766654 44433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.59  E-value=0.25  Score=46.04  Aligned_cols=143  Identities=22%  Similarity=0.196  Sum_probs=78.7

Q ss_pred             HhHHHHHHHcCCChh-HHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccc
Q 009250          347 YFSSLTFQDVGITDG-ALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF  425 (539)
Q Consensus       347 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (539)
                      ...+.+..+...... ...........+...++    .++.|.+.||.|||+.+..+.....++.+...+..        
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------   90 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIG----SLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------   90 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH----hhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------
Confidence            344555555544331 13333333333333222    68999999999999777766655334333333311        


Q ss_pred             hhhHHHHHHHHHHHHHhcc-cccccccccccccCc-ccccchhhHHHH-HHHHHHHHHHHHHHHHHHH--hCcchhhHHH
Q 009250          426 SHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSN-RTRGKIMGFSFS-VHWVCNFLVGLFFLDLVET--FGVAPVYAGF  500 (539)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~~~l~~~--~g~~~~~~~~  500 (539)
                      ..............+.+.+ ..+....+..|..|+ +.++...+.... ...++..+++.+.+.+...  .+|+..+...
T Consensus        91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477          91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            1111222222221233332 345666778888887 568888888888 5777888888776666554  3455544443


Q ss_pred             H
Q 009250          501 G  501 (539)
Q Consensus       501 ~  501 (539)
                      .
T Consensus       171 ~  171 (338)
T COG0477         171 A  171 (338)
T ss_pred             H
Confidence            3

>PRK03612 spermidine synthase; Provisional

Probab=95.17  E-value=0.29  Score=49.46  Aligned_cols=50  Identities=24%  Similarity=0.319  Sum_probs=36.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHH-HHhCcchhhHHHHHHHHHHHHhh
Q 009250          462 RGKIMGFSFSVHWVCNFLVGLFFLDLV-ETFGVAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       462 ~~~~~g~~~~~~~~g~~~~~~~~~~l~-~~~g~~~~~~~~~~~~~~~~~~~  511 (539)
                      .+...|-.+....+|+++|+.+.+.+. ...|.....++.+.+.++.+++.
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            567788889999999999999998765 46786666666666555555433

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.10  E-value=1  Score=41.43  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=53.1

Q ss_pred             HHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcC
Q 009250          134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA  206 (539)
Q Consensus       134 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  206 (539)
                      .+....++++.+.+..++|-|.++.++...+...-. .=+-+.+..++..-.+.|+|.+..+..--+++++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            444456666677999999999999988777654322 223467888999999999999998877666665543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.58  E-value=0.04  Score=49.62  Aligned_cols=137  Identities=14%  Similarity=0.066  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcC
Q 009250          127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA  206 (539)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  206 (539)
                      |.+.-+-.+...+..+.+....||+---+=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++.+ .+
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RY  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cC
Confidence            55555556666677777788888865433355666777888888999999999999988888888876665554433 23


Q ss_pred             CCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHHHHHHHHHhcccccch
Q 009250          207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVESP  268 (539)
Q Consensus       207 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~~p  268 (539)
                      +    ....+.++.+.+...++|..--..+.+..+ .-|.+.++...+-++.+...+++.++|
T Consensus       144 ~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  144 P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            3    335556666666666666554444444111 167777777777666666666655544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.72  E-value=0.36  Score=47.62  Aligned_cols=107  Identities=11%  Similarity=0.030  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcch--HHHHHH--HHHHHHHHHHHHh---------hhcHHHHHHHHHHhhhchhh
Q 009250          127 GLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQID--TIPLILGAIISAQ---------AHSLDEMLWGRFLVGLGIGV  193 (539)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~--~~~~~~~~~~~~~---------a~~~~~l~~~r~l~G~~~~~  193 (539)
                      -.+..+|.++-.+|..+..+.. .-++|  ++++.+  =+++.-..++|..         -++-+..++.-++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4566677777777776554321 11222  333221  2223333334432         24666677889999999999


Q ss_pred             hhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcC
Q 009250          194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI  234 (539)
Q Consensus       194 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~  234 (539)
                      ....+..+..+..+++||..+..+...+..+|..+|..++.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988887753

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=93.13  E-value=3.6  Score=42.11  Aligned_cols=130  Identities=13%  Similarity=0.117  Sum_probs=81.3

Q ss_pred             hhhHHHHhhh-cCCchhhHhhHHHHHHHHHHHHHHhcCCCC---------c-----c-chhhHHHHHHHHHHHHHh-ccc
Q 009250          383 ALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLD---------E-----D-FSHNLSILGTLFYIFTFA-IGA  445 (539)
Q Consensus       383 ~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~-~~~~~~~~~~~~~~~~~~-~~~  445 (539)
                      .+++++++|. +||.+.+.++.++..++..++......+..         .     . ......++...+.....+ .+.
T Consensus        90 ~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~  169 (571)
T KOG1237|consen   90 PLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGI  169 (571)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCC
Confidence            6788999997 488888888888888886666554332211         0     0 011112222222222222 223


Q ss_pred             ccccccccccccC----ccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhh
Q 009250          446 GPVTGLVIPELSS----NRTRG--KIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY  512 (539)
Q Consensus       446 ~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  512 (539)
                      -+...+.-+|.++    .+.+.  .-+...+...++|..++-.+.-++-++.||...|.+..+...++.++.+
T Consensus       170 r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  170 RPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             CCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence            4666677777776    22223  5666777777888888888888887889999888887777776665543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.83  E-value=0.6  Score=46.51  Aligned_cols=107  Identities=10%  Similarity=-0.080  Sum_probs=67.0

Q ss_pred             hhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhc-----CCCCccc-----------h------hhHHHHHHHHHHHH
Q 009250          383 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATS-----LPLDEDF-----------S------HNLSILGTLFYIFT  440 (539)
Q Consensus       383 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~------~~~~~~~~~~~~~~  440 (539)
                      ..+-.++++++++.++..+........+.++++...     ++.+...           .      ..+......+..=.
T Consensus        76 ~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aEl  155 (491)
T PF03219_consen   76 TILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAEL  155 (491)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            677889999999999877666555555555544321     1111100           0      00011111111112


Q ss_pred             Hhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009250          441 FAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE  489 (539)
Q Consensus       441 ~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~  489 (539)
                      ++... .-..+.+.+|.++.++..+-.++.....++|.++++.+...+.+
T Consensus       156 wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  156 WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222 23467889999999999999999999999999999998888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.82  E-value=1.3  Score=41.86  Aligned_cols=136  Identities=18%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhh-----hcCCchhhHh-hHHHHHHHHHHHH
Q 009250          341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMD-----KEGRQKLLIG-SYLGMAISMLLVV  414 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d-----r~g~r~~~~~-~~~~~~~~~~~~~  414 (539)
                      -..... ..|.+++..+.+-..++..-+...-..-       -+++..+.|     |+|||+..++ +..+.+..+..+.
T Consensus        46 P~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~sL-------KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs  117 (510)
T KOG3574|consen   46 PLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFSL-------KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLS  117 (510)
T ss_pred             chhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHHH-------HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHh
Confidence            343333 7788888655553322211111111111       567777777     8999986544 3333333344443


Q ss_pred             HHhcCCCC-ccchhhHHHHHHHHHHHHHhcccc-cccccccccccCcccccchhhHHHHHHHHHHHHHHHHH
Q 009250          415 GATSLPLD-EDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF  484 (539)
Q Consensus       415 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  484 (539)
                      ....-... ....+.....-..++..-+....+ .....+.-.+..++..|-+........+.|.+++-.++
T Consensus       118 ~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  118 YLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            32221111 111122222211222222222222 22233444455566666666655555556666554443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=92.69  E-value=0.066  Score=48.31  Aligned_cols=142  Identities=12%  Similarity=0.048  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhhhhcccccchhH--HHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcch------HHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPI--VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR------RTFQID  160 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr------~~l~~~  160 (539)
                      ++-++..++..++.+....+.+  |. .+.+.++ .+.|.-|....|.+|..+..     -+-|+=+-      .++..-
T Consensus       253 MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls-~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~v  325 (409)
T KOG3880|consen  253 MVPLALVYFAEYFINQGLAELLLFPC-SHGFSLS-KDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFV  325 (409)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccc-hhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHH
Confidence            4445556666665554444332  22 3344443 23456799999988754432     22222221      122233


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC
Q 009250          161 TIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (539)
Q Consensus       161 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~  237 (539)
                      .+++.+...+..+.++++..++.-+.-|+-.|..++...--+.+-.++++|-.+++...++-++|..++.+++-.+-
T Consensus       326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            34455556666788999999999999999999999988888888888899999999999999999999998887654

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.37  E-value=0.045  Score=51.33  Aligned_cols=107  Identities=15%  Similarity=0.156  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHH--HHHHHHHHHHHH----------hhhcHHHHHHHHHHhhhchhhhh
Q 009250          129 VVSIFIAGAFVGSISSGSLADK-LGCRRTFQID--TIPLILGAIISA----------QAHSLDEMLWGRFLVGLGIGVNT  195 (539)
Q Consensus       129 ~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~--~~~~~~~~~~~~----------~a~~~~~l~~~r~l~G~~~~~~~  195 (539)
                      +..+|.++-.+|....++.-=+ ..+|++++.+  =+++.-..++|.          +.+|-+..++.-++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4567778878887776653211 1244443321  122222222221          23455667888999999999999


Q ss_pred             hhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCC
Q 009250          196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (539)
Q Consensus       196 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  235 (539)
                      .....+..+..++++|..+..+......+|..+|..++..
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888888888777643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.63  E-value=0.18  Score=48.52  Aligned_cols=132  Identities=10%  Similarity=-0.076  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcC
Q 009250          127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA  206 (539)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  206 (539)
                      .|-..++.+...+.+....++++|+|-|+.+..+...+.++..+.+..++.+....-|-..|+-.+....+-...++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            35566777777799999999999999888888888888999999999999999888898888766665555555444432


Q ss_pred             CC-----------------------CccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHH
Q 009250          207 PT-----------------------KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (539)
Q Consensus       207 ~~-----------------------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~  258 (539)
                      -.                       ..+|...|+.+....+-.++..+..|.+.+..|+=+.+-.+.+..++...
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~  489 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIG  489 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHH
Confidence            11                       12356677777777777777777777776666655555555555554443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=90.61  E-value=1.7  Score=31.29  Aligned_cols=67  Identities=22%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             HHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHH
Q 009250          344 GVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG  415 (539)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  415 (539)
                      .++-.+|...++.+.+.. ..+.+-+...+.-.+|    .+...++.++.++++.+..+.+...+..+.+.+
T Consensus        10 ayTplLP~M~~~~~ls~~-~ag~lasaNy~GYL~G----Al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLS-QAGWLASANYLGYLVG----ALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             HHHhHhHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            345577888888887755 4444444443333222    888888888877788888888888888888776

Note that many members are hypothetical proteins.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.56  E-value=5  Score=38.56  Aligned_cols=19  Identities=11%  Similarity=-0.144  Sum_probs=10.2

Q ss_pred             hhHHHHHhHHHHHHHcCCC
Q 009250          341 GINGVLYFSSLTFQDVGIT  359 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~  359 (539)
                      -.+.+..-.+++.+.....
T Consensus        33 pWN~fiTa~~y~~~~~~~~   51 (406)
T KOG1479|consen   33 PWNMFITASDYYYYRFPGY   51 (406)
T ss_pred             chHhhhccHHHHHhhcCCC
Confidence            3444555556666655444

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=88.00  E-value=15  Score=36.26  Aligned_cols=109  Identities=11%  Similarity=-0.093  Sum_probs=66.9

Q ss_pred             hhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhc-----CCCCccc--------h-h--h-------HHHHHHHHHH
Q 009250          382 CALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATS-----LPLDEDF--------S-H--N-------LSILGTLFYI  438 (539)
Q Consensus       382 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~-~--~-------~~~~~~~~~~  438 (539)
                      ..++..++.+++.+.+++..........++++++...     .+.+...        + +  +       +......+..
T Consensus        78 f~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~a  157 (509)
T COG3202          78 FTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMA  157 (509)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHH
Confidence            3777888888888888777666655555555554332     1111000        0 0  0       1111111111


Q ss_pred             HHHhccc-ccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009250          439 FTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET  490 (539)
Q Consensus       439 ~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~  490 (539)
                      =.++... .-+.+...+|....++..+-.++.+...+++..++..+..++..+
T Consensus       158 ELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         158 ELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            1222222 235567788999999999999999999999999999888887653

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.04  E-value=9.1  Score=34.41  Aligned_cols=134  Identities=18%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHHHHh----hh---cHHHHHHHHHHhhhchhhhh
Q 009250          125 LEGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIPLILGAIISAQ----AH---SLDEMLWGRFLVGLGIGVNT  195 (539)
Q Consensus       125 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----a~---~~~~l~~~r~l~G~~~~~~~  195 (539)
                      --|.+.+.++++..+|+-+..++..|-..|  ..+.+..++.++...+...    +|   +...=+++-++.-.+.|..+
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            348999999999999999998888876554  4444444444443333322    22   22223455556667778899


Q ss_pred             hhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHH
Q 009250          196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (539)
Q Consensus       196 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  259 (539)
                      |....+-+++.|+++|...+.++..-.++=..++-..-..-....+ -|..|-++.+...+..+
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~-tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTT-TRNMFGICSAFLFVASI  425 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccc-cchhhhhhHHHHHHHHH
Confidence            9999999999999999988888765444433332111001111122 66777777766655543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.47  E-value=5.3  Score=35.70  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHH----HHHHHHHHHHHHHHh-h----hcHHHHHHHHHHhhhchhhhhh
Q 009250          127 GLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQ----IDTIPLILGAIISAQ-A----HSLDEMLWGRFLVGLGIGVNTV  196 (539)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-a----~~~~~l~~~r~l~G~~~~~~~~  196 (539)
                      ....-++..|+.+|....|++... +.||+.+.    .+++++.++.++... .    .++..+++.-|+.|++.=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            445667777778888888888774 55555443    334445555544212 1    1456677788888887655555


Q ss_pred             hHHHHHHhcCCCCccccchhhhHHHHHHHHHH
Q 009250          197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT  228 (539)
Q Consensus       197 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  228 (539)
                      +.... .+-+++.++-+.--.++..+++|.++
T Consensus       224 ViL~l-PhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  224 VILNL-PHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHhcC-hhhhcCCCcceehhHHHHHHHHHHHH
Confidence            54433 22233333333444445556666544

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=83.88  E-value=16  Score=34.30  Aligned_cols=104  Identities=16%  Similarity=0.102  Sum_probs=67.8

Q ss_pred             hhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHH-----HHHHHHHHhh
Q 009250          100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL-----ILGAIISAQA  174 (539)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~-----~~~~~~~~~a  174 (539)
                      +.+.-.+-..+..+...+. +.+-.|.+.+.+.|.+...+|+...-++.|.--.-+.+..-.++.     +...+-..|+
T Consensus        20 aa~GlvyElal~tLatyLl-G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA   98 (508)
T COG4262          20 AACGLVYELALGTLATYLL-GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFA   98 (508)
T ss_pred             HHhHHHHHHHHHHHHHHhc-CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3333334444555666653 236678899999999999999999998887543332222222222     1122222333


Q ss_pred             ----hcHHHHHHHHHHhhhchhhhhhhHHHHHHh
Q 009250          175 ----HSLDEMLWGRFLVGLGIGVNTVLVPIYISE  204 (539)
Q Consensus       175 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  204 (539)
                          ++-+.+++.-++.|.-.|...|....++..
T Consensus        99 ~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~  132 (508)
T COG4262          99 LESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR  132 (508)
T ss_pred             hccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence                456678888999999999999999988876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	539
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-37

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 220/483 (45%), Gaps = 59/483 (12%)
Query: 86  FPHVLIASMSNFLFGYHIGVMNGPIVSI------AKELGFEGNPILEGLVVSIFIAGAFV 139
           F   L+A++   LFGY   V++G + S+       + L       L G  V+  + G  +
Sbjct: 11  FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCII 70
Query: 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ------------------AHSLDEML 181
           G    G  +++ G R + +I  +   +  + SA                   A  + E +
Sbjct: 71  GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130
Query: 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG--IITSLFLGIPAEDD 239
             R + G+G+G+ ++L P+YI+E+AP   RG L +  Q     G  ++  +   I    D
Sbjct: 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD 190
Query: 240 PHW-----WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN 294
             W     WR M     +P  +  + +    ESPRWL   G    A+ ++  + G +   
Sbjct: 191 ASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLAT 250
Query: 295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ 354
           +A++E      K   D   +    L      V  IG  L + QQF GIN VLY++   F+
Sbjct: 251 QAVQEI-----KHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK 305
Query: 355 DVGI-TDGAL-ASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLL 412
            +G  TD AL  +++VGV N           + A   +DK GR+ L I   LGMAI M  
Sbjct: 306 TLGASTDIALLQTIIVGVINLT-------FTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358
Query: 413 VVGA--TSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF 470
           +  A  T  P        +++L  LFY+  FA+  GPV  +++ E+  N  RGK +  + 
Sbjct: 359 LGTAFYTQAP------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAV 412
Query: 471 SVHWVCNFLVGLFF--LD----LVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 524
           +  W+ N+ V   F  +D    LV  F     Y  +G + +L+ALF + F+ ETKG++LE
Sbjct: 413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472
Query: 525 EIE 527
           E+E
Sbjct: 473 ELE 475

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	539
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	6e-08
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-07
2cfq_A	417	Lactose permease; transport, transport mechanism,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	5e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 60/430 (13%), Positives = 122/430 (28%), Gaps = 65/430 (15%)

Query: 111 VSIAK----ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT----I 162
            ++A     E GF  +    G  +S             GS++D+   R            
Sbjct: 47  FALAMPYLVEQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104

Query: 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222
            ++    +     S+  M    FL G   G+        +      K RG + ++     
Sbjct: 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164

Query: 223 CLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK 281
            +G  I  L   +        W   LY+ +    ++AL     +                
Sbjct: 165 NVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQ--------SCG 215

Query: 282 AVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAG 341
                 +     +   E+     +++ +        +L  P+  + +I  A         
Sbjct: 216 LPPIEEYKNDYPDDYNEK----AEQELTAKQIFMQYVL--PNKLLWYIAIANVF------ 263

Query: 342 INGVLYFSS-------LTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK-- 392
           +  + Y             +   +   + A  L       G        L   ++ DK  
Sbjct: 264 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG-------TLLCGWMSDKVF 316

Query: 393 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGL 451
            G +      ++ +     +V            + N ++      +  F I G   + GL
Sbjct: 317 RGNRGATGVFFMTLVTIATIVYWMN-------PAGNPTVDMICMIVIGFLIYGPVMLIGL 369

Query: 452 VIPELSSNRTRGKIMGF-----SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLL 506
              EL+  +  G   GF             + +VG      V+ FG    +    G S+L
Sbjct: 370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY----TVDFFGWDGGFMVMIGGSIL 425

Query: 507 SALFAYYFIV 516
           + +     ++
Sbjct: 426 AVILLIVVMI 435

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 55/332 (16%), Positives = 102/332 (30%), Gaps = 30/332 (9%)

Query: 97  FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT 156
           FL+      +N  ++   ++  F       GL+ S F  G F+  I +G L  KL  +  
Sbjct: 36  FLWAV-ANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93

Query: 157 FQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRG 212
                    LGA +   +A+  +    L G F++  G+G   T   P +++ + P     
Sbjct: 94  IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP-FVTVLGPESSGH 152

Query: 213 SLGTLCQ----VGTCLG--IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266
               L Q     G  +      SL L             M              +  +V+
Sbjct: 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS---AYKHSLVLSVQ 209

Query: 267 SPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326
           +P  +    +L    A++  L     +                   +  S L    H R 
Sbjct: 210 TPYMIIVAIVL--LVALLIMLTKFPALQSDNHS-----DAKQGSFSASLSRLARIRHWRW 262

Query: 327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCA 386
           A +    ++  Q A  +   Y      +++       A+  +  T               
Sbjct: 263 AVLAQFCYVGAQTACWS---YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG----RFTG 315

Query: 387 SYLMDKEGRQKLLIGSYLGMAISMLLVVGATS 418
           ++L+ +    K+L    L      L+   A  
Sbjct: 316 TWLISRFAPHKVLAAYALIAMALCLISAFAGG 347

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 51/444 (11%), Positives = 123/444 (27%), Gaps = 57/444 (12%)

Query: 87  PHVLIASMSNFLFGYHIGVMNGPIVSI--AKELGFEGNPILEGLVVSIFIAGAFVGSISS 144
            +  +  +  F + + +G    P   I          +    G++ +     + +     
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLF 63

Query: 145 GSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV-----NTVLVP 199
           G L+DKLG R+        +++             + +   +  +  G+          P
Sbjct: 64  GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123

Query: 200 I--YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL 257
                 E    +     G     G     + +  +GI    +  +   + ++ S    IL
Sbjct: 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF---VFWLGSGCALIL 180

Query: 258 ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317
           A+ + F                + A +AN  G +    +++    + ++           
Sbjct: 181 AVLLFFAKTDA----------PSSATVANAVGANHSAFSLKLALELFRQ----------- 219

Query: 318 LLEEPHSRVAFIGGALFLLQQFAGINGVLY-FSSLTFQDVGITDGALASLLVGVTNFAGL 376
                          + +   +   +     F +  F               G     G 
Sbjct: 220 -----PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV-----FGYVTTMGE 269

Query: 377 RSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF 436
                    A  ++++ G +  L+ +   M++ ++    ATS            ++    
Sbjct: 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL--------EVVILKTL 321

Query: 437 YIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVETFGVAP 495
           ++F             I      R    I    F     +    + +   ++ E+ G   
Sbjct: 322 HMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380

Query: 496 VYAGFGGVSLLSALFAYYFIVETK 519
            Y   G V+L   L + + +    
Sbjct: 381 AYLVLGLVALGFTLISVFTLSGPG 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 54/388 (13%), Positives = 96/388 (24%), Gaps = 119/388 (30%)

Query: 2   RVATVLHHPVRPVPSY---RSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSR 58
            + T    P      Y   R  L+  +        F+  + S     L  ++ L ELR  
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQ------VFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 59  KQ----------KQDGENLLSRDQKAEEGFDLG--WLPAF-----PHVLIASMSNFLFGY 101
           K           K      +    K +   D    WL        P  ++  +   L  Y
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLL--Y 207

Query: 102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161
            I          +       N  L                    S+  +L  RR  +   
Sbjct: 208 QIDPNWTSRSDHSS------NIKLR-----------------IHSIQAEL--RRLLKSKP 242

Query: 162 IPLILGAIISAQAHSLDEM----LWGRFLVG---L----GIGVNTVLVPIYISEVAPTKY 210
               L  ++      L  +     W  F +    L       V   L     + ++   +
Sbjct: 243 YENCL--LV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 211 RGSLG---TLCQVGTCLGIITS-----------LFLGIPAE---DDP-HW--WRTMLY-- 248
             +L        +   L                  L I AE   D    W  W+ +    
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 249 --------IASL-PGFILALGMQFTVESPRWLCKGGMLNDAK---AVIANLWGESEINKA 296
                   +  L P     +  + +V              A     +++ +W +   +  
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----------FPPSAHIPTILLSLIWFDVIKSDV 404

Query: 297 IEEFQLVIKKDGSDLDSQWSELLEEPHS 324
           +     + K   S ++ Q  E      S
Sbjct: 405 MVVVNKLHKY--SLVEKQPKESTISIPS 430

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171
            +A++L           V+  ++    V  +  G ++D++G R    +     +L  +++
Sbjct: 25  DMARDLN--VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82

Query: 172 AQAHSLDEMLWGRFLVGLGIGVNTVL 197
               SL  ++    + G+G GV  V+
Sbjct: 83  VTTSSLTVLIAASAMQGMGTGVGGVM 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	539
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.29
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.29
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.26
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.26
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.22
2xut_A	524	Proton/peptide symporter family protein; transport	99.19

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6.9e-46  Score=373.61  Aligned_cols=438  Identities=28%  Similarity=0.489  Sum_probs=340.6

Q ss_pred             hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCC------CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHH
Q 009250           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ  158 (539)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~  158 (539)
                      .+.+.++.+++.++.++|.++++..+|.+.++++.+.      ++.+.|++.+++.+|..+|++++|+++||+|||++++
T Consensus        10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~   89 (491)
T 4gc0_A           10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            4555666788889999999999999999999886421      2346789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH------------------hhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHH
Q 009250          159 IDTIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV  220 (539)
Q Consensus       159 ~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  220 (539)
                      ++.+++.+++++++                  +++|+++++++|+++|+|.|+..+....+++|+.|+++|++..++.+.
T Consensus        90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~  169 (491)
T 4gc0_A           90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF  169 (491)
T ss_dssp             HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence            99999999999999                  478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCC-------cchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcch
Q 009250          221 GTCLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI  293 (539)
Q Consensus       221 ~~~~G~~~~~~~~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  293 (539)
                      +..+|.++++.++......       ..+||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++..+++..
T Consensus       170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence            9999999988877544321       123999999999999999999999999999999999999999988877655444


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhH--HHHHHHHHH
Q 009250          294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGA--LASLLVGVT  371 (539)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  371 (539)
                      +++..+.....+++++.  ......+   ..+...+......+.++.+...+.+|.+.+.+..+.....  ......++.
T Consensus       250 ~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (491)
T 4gc0_A          250 TQAVQEIKHSLDHGRKT--GGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI  324 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH--TTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhh--hhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence            33333222221111110  1111111   2233444455555666667788888999998888776542  223344444


Q ss_pred             HhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccc
Q 009250          372 NFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL  451 (539)
Q Consensus       372 ~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (539)
                      .+.+       .++++++.||+|||+.+..+.....++.+.+.......    ......+....++..++..+..++.+.
T Consensus       325 ~~~~-------~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (491)
T 4gc0_A          325 NLTF-------TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWV  393 (491)
T ss_dssp             HHHH-------HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHH-------HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4544       89999999999999999988888888777766543321    233444555556666777777888889


Q ss_pred             ccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH------HhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHH
Q 009250          452 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEE  525 (539)
Q Consensus       452 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (539)
                      +.+|.+|++.|+++.|+.+.++++++++++.+.+.+.+      ..+....|++++++++++.++.++++||||+|++||
T Consensus       394 ~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee  473 (491)
T 4gc0_A          394 LLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE  473 (491)
T ss_dssp             HHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence            99999999999999999999999999999888776543      356677888999999999998889999999999999


Q ss_pred             HHHHhccCCCCCC
Q 009250          526 IEMSLNANSTPGN  538 (539)
Q Consensus       526 ~~~~~~~~~~~~~  538 (539)
                      +|+.+|+++++++
T Consensus       474 i~~~f~~~~~~~~  486 (491)
T 4gc0_A          474 LEALWEPETKKTQ  486 (491)
T ss_dssp             HGGGTC-------
T ss_pred             HHHHhCCCCcccc
Confidence            9998887665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.3e-37  Score=308.60  Aligned_cols=372  Identities=14%  Similarity=0.099  Sum_probs=283.3

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      +++..+..+++..++.+++.....+..|.+.+++|+  +..+.|++.+++.+++.++++++|+++||+|||++++++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            345567777788888899889999999999999999  889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC-CC
Q 009250          164 LILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DD  239 (539)
Q Consensus       164 ~~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~  239 (539)
                      .+++.+++   +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999   889999999999999999999999999999999999999999999999999999999999999988 55


Q ss_pred             cch------------------------hHHHHHhhHHHHHHHHHHhcc--cccchHHHHhcCChhHHHHHHHHHcCCcch
Q 009250          240 PHW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEI  293 (539)
Q Consensus       240 ~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  293 (539)
                      .+.                        ||+.|++.+++.++..+..++  .||+++.   +.                  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~------------------  239 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH------------------  239 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC------------------
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc------------------
Confidence            544                        999998877776666554433  3444310   00                  


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHH-HHHc-CCChhHHHHHHHHHH
Q 009250          294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLT-FQDV-GITDGALASLLVGVT  371 (539)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  371 (539)
                                .++++++.+..++++++++..+...+...+...    .......+.+.+ +++. +.+.. ..+....+.
T Consensus       240 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~  304 (438)
T 3o7q_A          240 ----------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAG-FAANYLTGT  304 (438)
T ss_dssp             ----------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHH-HHHHHHHHH
T ss_pred             ----------ccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchh-HHHHHHHHH
Confidence                      001112223456677777776665554433333    334455666777 7776 55543 555555555


Q ss_pred             HhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccc
Q 009250          372 NFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL  451 (539)
Q Consensus       372 ~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (539)
                      .+.+.++    .++.+++.||++||+.+..+.++..++.+++...         ......+...+...+ .....+....
T Consensus       305 ~~~~~~~----~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~-~~~~~~~~~~  370 (438)
T 3o7q_A          305 MVCFFIG----RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAF-MSIQYPTIFS  370 (438)
T ss_dssp             HHHHHHH----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHH-HHHHHHHHHH
Confidence            5554433    9999999999999999988888877776665552         122222222222222 2334566777


Q ss_pred             ccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Q 009250          452 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSAL  509 (539)
Q Consensus       452 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~  509 (539)
                      +..|.+|++ ++.+.++.. ...++++++|.+.|.+.+..| +...|.+.+++.++..+
T Consensus       371 ~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            778888877 888888877 677999999999999999999 88888876655554444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=5.8e-39  Score=319.60  Aligned_cols=398  Identities=14%  Similarity=0.107  Sum_probs=288.3

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      .+++.+..++++.++..++...+.+.+|.+.+++ .  +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            3466788888889999999999999999999999 7  888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh----hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          164 LILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       164 ~~~~~~~~~~----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      .+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999    999999999999999999999999999999999999999999999999999999999999876654


Q ss_pred             cchhHHHHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhh
Q 009250          240 PHWWRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL  318 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (539)
                      .++||+.|++.+++.++..++. ++++|+|+....+...+.          ..+.+.   +.+...+++....+...++.
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KNDYPD---DYNEKAEQELTAKQIFMQYV  248 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CCC----------------CCTHHHHHHT
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------cccccc---cchhhhhcccccccchHHHH
Confidence            4339999999998887765544 557777653211111100          000000   00000001111111113555


Q ss_pred             hccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc--CC
Q 009250          319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE--GR  395 (539)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~--g~  395 (539)
                      ++++..+...+...+..    ........+.|.++++ .+.+.. ..+.......+...++    .++.+++.||+  +|
T Consensus       249 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~g~l~~~~~~~~  319 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHFALD-KSSWAYFLYEYAGIPG----TLLCGWMSDKVFRGN  319 (451)
T ss_dssp             SSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHBTTBSCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHTSTTC
T ss_pred             HcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCC
Confidence            66555444433333222    2445566677888877 455543 4555555555544333    99999999999  99


Q ss_pred             chhhHhhHHHHH-HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCcccccchhhHHHHHH
Q 009250          396 QKLLIGSYLGMA-ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVH  473 (539)
Q Consensus       396 r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  473 (539)
                      |+.+..+..+.. ++++++...   +     ...........+..+++. +..+....+..|.+|++.|+++.|+.+.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  391 (451)
T 1pw4_A          320 RGATGVFFMTLVTIATIVYWMN---P-----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  391 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSC---C-----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHh---c-----ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence            988777666555 443333221   0     111222222222333322 234555678889999999999999999999


Q ss_pred             HH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250          474 WV-CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF  514 (539)
Q Consensus       474 ~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (539)
                      ++ |..++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus       392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99 999999999999999999999988888887777665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=2.1e-32  Score=275.24  Aligned_cols=418  Identities=14%  Similarity=0.089  Sum_probs=254.3

Q ss_pred             HHHHHHHHhhhhhcccccchhH-HHHHHH-----hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDT  161 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~  161 (539)
                      ++.+++..++..+......+.+ +.+.++     +|+  +..+.+++.+++.++..++++++|+++|| +|||+++..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~   92 (491)
T 4aps_A           15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG   92 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            3344444444444444443333 444555     888  89999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCc--cccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       162 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      ++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++  |+.++++++.+.++|..++|.+++.+.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  172 (491)
T 4aps_A           93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA  172 (491)
T ss_dssp             HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999988  77788889999999999999999999887


Q ss_pred             cchhHHHHHhhHHHHHHHHHHhccc-ccchH----HHHhcCChhHHHHHHHH----------------HcCCcchHHHHH
Q 009250          240 PHWWRTMLYIASLPGFILALGMQFT-VESPR----WLCKGGMLNDAKAVIAN----------------LWGESEINKAIE  298 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~~~~~~-~~~p~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  298 (539)
                      .+ ||+.|++.++..++..+..++. ++..+    ....+.+.++..+..+.                .....+.+....
T Consensus       173 ~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~  251 (491)
T 4aps_A          173 AG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN  251 (491)
T ss_dssp             SC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence            77 9999999887776665554432 21100    00011122222221111                001100000000


Q ss_pred             HH--------HHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCC--hhHHHHHH
Q 009250          299 EF--------QLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLL  367 (539)
Q Consensus       299 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~  367 (539)
                      ..        ........++.+....+..+........+.......    .+.....+.+.+.++. +.+  ........
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (491)
T 4aps_A          252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWA----IEEQGSVVLATFAAERVDSSWFPVSWFQSL  327 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHH----HHGGGGTHHHHHHHHSCCCSSSCSGGGTTH
T ss_pred             hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH----HHhhccHHHHHHHHHHhccCccCHHHHhcc
Confidence            00        000000000000111111111111222222222222    1222233445555543 222  22233344


Q ss_pred             HHHHHhcccccccchhhhHHHHhhhcCCchhhH-----hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh
Q 009250          368 VGVTNFAGLRSEKYCALCASYLMDKEGRQKLLI-----GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA  442 (539)
Q Consensus       368 ~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (539)
                      ..+..+.+       .++.+++.||++||+...     .+..+.+++.+++.............+........++.....
T Consensus       328 ~~~~~~~~-------~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  400 (491)
T 4aps_A          328 NPLFIMLY-------TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE  400 (491)
T ss_dssp             HHHHHHHH-------HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH
T ss_pred             chHHHHHH-------HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence            44444444       888999999999987554     566666666555544321110001112222222222222222


Q ss_pred             cccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCC
Q 009250          443 IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR  521 (539)
Q Consensus       443 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (539)
                      ....+....+..|.+|++.|+++.|+.+...++|.+++|.+.+.+.+ .++...|.+.+++.++..++.+++.++.+++
T Consensus       401 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          401 MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23356677889999999999999999999999999999999887654 5677788888888877777766665555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=4.3e-34  Score=277.06  Aligned_cols=358  Identities=12%  Similarity=0.076  Sum_probs=258.8

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  168 (539)
                      +..+++..++..++...+.+.+|.+.+++|.  ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            3456777788888899999999999999999  88899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009250          169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY  248 (539)
Q Consensus       169 ~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~  248 (539)
                      ++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++++.+..+ ||+.|+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~  158 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL  158 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988777 999999


Q ss_pred             hhHHHHHHHHH-HhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHH
Q 009250          249 IASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA  327 (539)
Q Consensus       249 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (539)
                      +.+++.++..+ ..+++||+++.                                  ++++++.+..+++.++++..+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~  204 (375)
T 2gfp_A          159 FLLVLCAGVTFSMARWMPETRPV----------------------------------DAPRTRLLTSYKTLFGNSGFNCY  204 (375)
T ss_dssp             HHHHHHHHHHCCCCCSSCCCSTT----------------------------------TCCCCCTTTCSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcccCCC----------------------------------CcccccHHHHHHHHhcCcchHHH
Confidence            99888887776 44556776531                                  00111223445666666655544


Q ss_pred             HHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHH-
Q 009250          328 FIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLG-  405 (539)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~-  405 (539)
                      .+...+...    .......+.|.+.++ .+.+. ...+.......+...+    +.++.+++.||.+++  ...+... 
T Consensus       205 ~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~----~~~~~~~l~~r~~~~--~~~~~~~~  273 (375)
T 2gfp_A          205 LLMLIGGLA----GIAAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFF----GAWFAGRPNKRFSTL--MWQSVICC  273 (375)
T ss_dssp             HHHHHHHHH----HHHHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHH----HHHHHHTTTTHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHH
Confidence            443333222    333444555555544 34332 2444444444444322    388888888888762  2222222 


Q ss_pred             HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 009250          406 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL  485 (539)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~  485 (539)
                      ...+...+.....    ...+.+.......+...+.+ ...+....+..|..| ++|+++.|+.+...++|..++|.+.+
T Consensus       274 ~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g  347 (375)
T 2gfp_A          274 LLAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA  347 (375)
T ss_dssp             HHTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred             HHHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            2222211111000    00011112222222222222 235666788889998 78999999999999999999999999


Q ss_pred             HHHHHhCcchhhHHH
Q 009250          486 DLVETFGVAPVYAGF  500 (539)
Q Consensus       486 ~l~~~~g~~~~~~~~  500 (539)
                      .+.+..++...+.+.
T Consensus       348 ~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          348 MLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHhcCCcccHHHHHH
Confidence            998877776665543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=7e-29  Score=251.56  Aligned_cols=166  Identities=15%  Similarity=0.114  Sum_probs=143.2

Q ss_pred             HHhhhhhcccccchhHH-HHHHHhC------CCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-cchHHHHHHHHHHHH
Q 009250           95 SNFLFGYHIGVMNGPIV-SIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLIL  166 (539)
Q Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~  166 (539)
                      ..++..+......+.++ .+.+++|      +  +..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.++
T Consensus        20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~   97 (524)
T 2xut_A           20 SEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            33444444433444444 5677888      7  888899999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhh-cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhh---hHHHHHHHHHHHHHhcCCCCCCcch
Q 009250          167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDDPHW  242 (539)
Q Consensus       167 ~~~~~~~a~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~~~  242 (539)
                      +.+++++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+.   ++.+.++|..++|.+++.+.+..+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  176 (524)
T 2xut_A           98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-  176 (524)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence            999999999 999999999999999999999999999999999999877666   899999999999999999887777 


Q ss_pred             hHHHHHhhHHHHHHHHHHhcc
Q 009250          243 WRTMLYIASLPGFILALGMQF  263 (539)
Q Consensus       243 wr~~f~~~~~~~~~~~~~~~~  263 (539)
                      ||+.|++.+++.++..+..++
T Consensus       177 ~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          177 AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999988887766555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.96  E-value=1.4e-29  Score=248.25  Aligned_cols=383  Identities=12%  Similarity=0.014  Sum_probs=235.0

Q ss_pred             HHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH-
Q 009250           92 ASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI-  169 (539)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-  169 (539)
                      +.+..++..+......+.+|. +++++|+  ++.+.|++.+++.+++.++++++|+++||+|||++++++..+++++.. 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~   89 (417)
T 2cfq_A           12 FGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP   89 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            333334444444555667776 4566898  888889999999999999999999999999999999998887765322 


Q ss_pred             --HHHhhhcH-HHHHHHHHHhhhchhhhhhhHHHHHHhcCCC--CccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250          170 --ISAQAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (539)
Q Consensus       170 --~~~~a~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr  244 (539)
                        .+++++.. ..++..+++.|++.+...+.....+.++.++  ++|+...+....+..+|..++|.+++++.+ .+ ||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~  167 (417)
T 2cfq_A           90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQ  167 (417)
T ss_dssp             HHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hh
Confidence              12233222 1244567777777666555555555555443  456777788878888999999999888765 35 99


Q ss_pred             HHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCch
Q 009250          245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS  324 (539)
Q Consensus       245 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (539)
                      +.|++.++..++..+..++.+|+++.   +.+.++           .+           .+++++.....++++++++..
T Consensus       168 ~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~-----------~~~~~~~~~~~~~~~~~~~~~  222 (417)
T 2cfq_A          168 FVFWLGSGCALILAVLLFFAKTDAPS---SATVAN-----------AV-----------GANHSAFSLKLALELFRQPKL  222 (417)
T ss_dssp             HHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS-----------SS-----------SSCCCCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccccc---cccccc-----------cc-----------ccccccccHHHHHHHhcCCch
Confidence            99998887766555555555544310   000000           00           000001111234456666655


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCCh---hHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh
Q 009250          325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD---GALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG  401 (539)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~  401 (539)
                      +...+.......    .+.....+.|.++.+.....   ....+....+..+...    ++.++.++++||+|||+.+..
T Consensus       223 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~g~l~dr~g~~~~l~~  294 (417)
T 2cfq_A          223 WFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNA----SIMFFAPLIINRIGGKNALLL  294 (417)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCHHHHHHH
T ss_pred             hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcHHHHHHH
Confidence            443332222211    12222223455544432211   1122333333333332    228999999999999998887


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHH-HHHHHHHHHHH
Q 009250          402 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHWVCNFLV  480 (539)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~  480 (539)
                      +..+.++..+.+...   .     +.+..+....+...+.. ...+....+..|.+|++.||++.++. +....+|++++
T Consensus       295 ~~~~~~~~~~~~~~~---~-----~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g  365 (417)
T 2cfq_A          295 AGTIMSVRIIGSSFA---T-----SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM  365 (417)
T ss_dssp             HHHHHHHHHHHHTTC---C-----SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh---c-----cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence            777666654444221   0     11222222111222211 12233457888999999999999994 78888999999


Q ss_pred             HHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCC
Q 009250          481 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       481 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      |.+.|.+.+..|+...|.+.+++.+++.++.+...+|+++
T Consensus       366 p~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             THHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             hhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            9999999998888888888888888877766666665444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=1.4e-13  Score=136.34  Aligned_cols=174  Identities=14%  Similarity=0.100  Sum_probs=145.6

Q ss_pred             HHHHHHHHhhhhhcccccchhHHHHHHH-hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh--cchHHHHHHHHHHH
Q 009250           89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI  165 (539)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~  165 (539)
                      ++.+.+..++..+.........|.+.++ +|.  +..+.+++.+.+.++..++.++.|++.||+  |||+.+..+..+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            3344444455555555566677777766 788  888899999999999999999999999999  99999988887776


Q ss_pred             -HHHHHHHhh--hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHH-HHHHHHHhcCCCCCCcc
Q 009250          166 -LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPH  241 (539)
Q Consensus       166 -~~~~~~~~a--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~  241 (539)
                       ++.++..+.  .+.+.+.+.-++.|++.+...+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+..+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             666666666  47888888899999999999999999999999999999999999999999 99999999999988888


Q ss_pred             hhHHHHHhhHHHHHHHHHHhcccc
Q 009250          242 WWRTMLYIASLPGFILALGMQFTV  265 (539)
Q Consensus       242 ~wr~~f~~~~~~~~~~~~~~~~~~  265 (539)
                       |+..|++.+++.++..++.++.+
T Consensus       412 -~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          412 -WDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHH
Confidence             99999998888887776665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.29  E-value=3.1e-12  Score=124.99  Aligned_cols=144  Identities=13%  Similarity=0.020  Sum_probs=123.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHH
Q 009250          123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI  202 (539)
Q Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i  202 (539)
                      ....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44557888888888899999999999999999999999999888888888888888888888888988877778888999


Q ss_pred             HhcCCCCccccchhh-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc-cccc
Q 009250          203 SEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES  267 (539)
Q Consensus       203 ~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~  267 (539)
                      .|.+|++.|+.+.++ ++....+|..++|.+++++.+..+ ++..|.+.+++.++..++.++ .+|+
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            999999999999998 488889999999999999887666 899999888887777665444 4544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.29  E-value=3.8e-11  Score=118.17  Aligned_cols=159  Identities=16%  Similarity=0.116  Sum_probs=114.1

Q ss_pred             hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250          341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP  420 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  420 (539)
                      .........|.+.++.+.+.. ..+.+.+...+...++    .++.|+++||+|||+.+..+.++.+++.++......  
T Consensus        41 ~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~i~----~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--  113 (438)
T 3o7q_A           41 ANNLNDILLPQFQQAFTLTNF-QAGLIQSAFYFGYFII----PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--  113 (438)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSH-HHHHHHHHHHHHHHTT----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHhHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--
Confidence            445666677888888887765 5666666666665444    999999999999999999999999988887733211  


Q ss_pred             CCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHH-HHhC------
Q 009250          421 LDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV-ETFG------  492 (539)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~-~~~g------  492 (539)
                           ......+....+..+.+.+ ..+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+      
T Consensus       114 -----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  188 (438)
T 3o7q_A          114 -----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV  188 (438)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred             -----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence                 1122222222233333333 34566788999999999999999999999999999999999988 4444      


Q ss_pred             -------------------cchhhHHHHHHHHHHHHhh
Q 009250          493 -------------------VAPVYAGFGGVSLLSALFA  511 (539)
Q Consensus       493 -------------------~~~~~~~~~~~~~~~~~~~  511 (539)
                                         |++.|++.+++.++..++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  226 (438)
T 3o7q_A          189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI  226 (438)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                               6777777666666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.26  E-value=1.6e-11  Score=118.27  Aligned_cols=165  Identities=13%  Similarity=0.064  Sum_probs=121.3

Q ss_pred             hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250          341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP  420 (539)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  420 (539)
                      .........|.+.++.+.+.. ..+.+.+...+...++    .++.|+++||+|||+.+..+..+..++.++.....   
T Consensus        15 ~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---   86 (375)
T 2gfp_A           15 AQTIYIPAIADMARDLNVREG-AVQSVMGAYLLTYGVS----QLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS---   86 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTH-HHHHHHHHHHHHHHHH----HTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHhhhhHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---
Confidence            344445556777777776655 5556666555555444    99999999999999999999998888887776632   


Q ss_pred             CCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Q 009250          421 LDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG  499 (539)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  499 (539)
                             ....+....+..+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+
T Consensus        87 -------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           87 -------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             -------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence                   22222223333333333 3566678889999999999999999999999999999999999888899999988


Q ss_pred             HHHHHHHHHHhhheeeeCCCC
Q 009250          500 FGGVSLLSALFAYYFIVETKG  520 (539)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~  520 (539)
                      .+++.++..++..+..||+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHHHHHCcccCC
Confidence            888777776655566666543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.26  E-value=1.2e-11  Score=123.87  Aligned_cols=162  Identities=16%  Similarity=0.109  Sum_probs=115.3

Q ss_pred             cccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hcHH
Q 009250          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-----HSLD  178 (539)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~  178 (539)
                      ..+....+.+.+..+.  +............+...++.++.+++.||+|||+.++.+.....++.+..+..     ++..
T Consensus       294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  371 (491)
T 4gc0_A          294 NVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV  371 (491)
T ss_dssp             HHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHH
Confidence            3444455777777776  66666677777888888999999999999999999999998888877766543     1122


Q ss_pred             HHHHH-HHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc-----hhHHHHHhhHH
Q 009250          179 EMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWRTMLYIASL  252 (539)
Q Consensus       179 ~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-----~wr~~f~~~~~  252 (539)
                      .++.. -+..+.+. ...+....+.+|.+|.+.|+.++++......+|..+++.+...+.+...     ++.+.|++.++
T Consensus       372 ~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~  450 (491)
T 4gc0_A          372 ALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC  450 (491)
T ss_dssp             HHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            22222 22222222 3456778899999999999999999999999999888877665543211     14567788787


Q ss_pred             HHHHHHHHh-cccccch
Q 009250          253 PGFILALGM-QFTVESP  268 (539)
Q Consensus       253 ~~~~~~~~~-~~~~~~p  268 (539)
                      ++++..+.. +++||+.
T Consensus       451 ~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          451 MGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHheecCCC
Confidence            777776655 5688873

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.22  E-value=9.9e-11  Score=117.09  Aligned_cols=158  Identities=11%  Similarity=0.038  Sum_probs=110.9

Q ss_pred             hHHHHHhHHHHHHH------cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh-cCCchhhHhhHHHHHHHHHHHH
Q 009250          342 INGVLYFSSLTFQD------VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK-EGRQKLLIGSYLGMAISMLLVV  414 (539)
Q Consensus       342 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~  414 (539)
                      +.....+.+.++++      .+.+.. ..+.+.+...+...++    .++.|+++|| +|||+.+..+.++..++.+++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (491)
T 4aps_A           29 YYGMRAILLYYMWFLISTGDLHITRA-TAASIMAIYASMVYLS----GTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA  103 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCSCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchhhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            33344444555544      566544 5566666666655444    9999999999 8999999999988888877765


Q ss_pred             HHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009250          415 GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRT--RGKIMGFSFSVHWVCNFLVGLFFLDLVETFG  492 (539)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g  492 (539)
                      ...        +.+...+..++.+.+. ....+...+++.|.+|++.  |+.+.++.+...++|..++|.+.+.+.+..|
T Consensus       104 ~~~--------~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A          104 LPF--------GASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             SCC--------STTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             Hhh--------hHHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            521        2222222222222222 2234667788999999988  7778888999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHhhhe
Q 009250          493 VAPVYAGFGGVSLLSALFAYY  513 (539)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~  513 (539)
                      |+..|++.++..+++.++.+.
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          175 YHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999887776666555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.19  E-value=1.5e-10  Score=116.81  Aligned_cols=155  Identities=10%  Similarity=0.105  Sum_probs=107.7

Q ss_pred             HHHhHHHHH-HHcC------CChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc-CCchhhHhhHHHHHHHHHHHHHH
Q 009250          345 VLYFSSLTF-QDVG------ITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGA  416 (539)
Q Consensus       345 ~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~  416 (539)
                      ...+.+.++ ++.+      .+.. ..+.+.++..+...++    .++.|+++||+ |||+.+..+.++..++.+++.+.
T Consensus        31 ~~~~l~~~l~~~~~~~~~~~~s~~-~~g~~~~~~~~~~~~~----~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~  105 (524)
T 2xut_A           31 MRNILTPFLMTALLLSIPEELRGA-VAKDVFHSFVIGVYFF----PLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF  105 (524)
T ss_dssp             HHHHHHHHHHHSCSSCCSSSTTTT-THHHHHHHHHHHHHHT----HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccccccccCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence            344445544 4455      4433 5555555555555444    99999999999 99999999988888887777652


Q ss_pred             hcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCcccccchhhH---HHHHHHHHHHHHHHHHHHHHHHhC
Q 009250          417 TSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGF---SFSVHWVCNFLVGLFFLDLVETFG  492 (539)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~l~~~~g  492 (539)
                      .        .+. ..+....+..+.+. ...+...+++.|.+|+++|+++.+.   .+...++|..++|.+.+.+.+..|
T Consensus       106 ~--------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (524)
T 2xut_A          106 E--------HSV-QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG  176 (524)
T ss_dssp             S--------SCH-HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred             c--------ccH-HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            1        012 22222222333332 3356677889999999999876666   888899999999999999999899


Q ss_pred             cchhhHHHHHHHHHHHHhhhe
Q 009250          493 VAPVYAGFGGVSLLSALFAYY  513 (539)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~  513 (539)
                      |+..|++.+++.++..++.++
T Consensus       177 ~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          177 AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998888777666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	539
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-21
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-11

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 95.1 bits (235), Expect = 2e-21
 Identities = 64/445 (14%), Positives = 131/445 (29%), Gaps = 31/445 (6%)

Query: 88  HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
            + +     +   Y +       +    E GF    +  G  +S             GS+
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISIAYGFSKFIMGSV 82

Query: 148 ADKLGCRRTFQIDTIPLILGAII----SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS 203
           +D+   R       I      +          S+  M    FL G   G+        + 
Sbjct: 83  SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142

Query: 204 EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
                K RG + ++      +G      L +      + W   LY+ +    ++AL    
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202

Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323
            +      C    + + K    + + E    +                 +     ++   
Sbjct: 203 MMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL----------------TAKQIFMQYVL 246

Query: 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCA 383
                   A+  +  +    G+L +S    ++V       +S    +  +AG+       
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI----PGT 302

Query: 384 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 443
           L   ++ DK  R              M LV  AT +       +    +  +  I     
Sbjct: 303 LLCGWMSDKVFRGNRGA----TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 358

Query: 444 GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG-LFFLDLVETFGVAPVYAGFGG 502
           G   + GL   EL+  +  G   GF+    ++   +         V+ FG    +    G
Sbjct: 359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 418

Query: 503 VSLLSALFAYYFIVETKGRSLEEIE 527
            S+L+ +     ++  K R  + ++
Sbjct: 419 GSILAVILLIVVMIGEKRRHEQLLQ 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 40/443 (9%), Positives = 108/443 (24%), Gaps = 39/443 (8%)

Query: 87  PHVLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
            +  +  +  F + + +G       + +        +    G++ +     + +     G
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFG 64

Query: 146 SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV 205
            L+DKLG R+        +++             + +   +  +  G+            
Sbjct: 65  LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI------------ 112

Query: 206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
                                + +    +    +  + R  ++         ++      
Sbjct: 113 ---------YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163

Query: 266 ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325
            + +++   G        +   + +++   +      V     +       EL  +P   
Sbjct: 164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223

Query: 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALC 385
              +                  F +  F            +                 L 
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVT------------TMGELL 271

Query: 386 ASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA 445
            + +M         IG    + ++  ++            +  + IL TL          
Sbjct: 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF--EVPFL 329

Query: 446 GPVTGLVIPELSSNRTRGKIMGFSFSV-HWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 504
                  I      R    I    F     +    + +   ++ E+ G    Y   G V+
Sbjct: 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389

Query: 505 LLSALFAYYFIVETKGRSLEEIE 527
           L   L + + +      SL   +
Sbjct: 390 LGFTLISVFTLSGPGPLSLLRRQ 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	539
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.48
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-39  Score=316.16  Aligned_cols=404  Identities=15%  Similarity=0.091  Sum_probs=277.3

Q ss_pred             chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (539)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  163 (539)
                      .+|.++..+.++.+...++...++...|.+. |+|+  +..|.|++.+++.+++.++++++|+++||+|||+++.++.++
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            3577777788888888888888888888775 5788  888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh----hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250          164 LILGAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (539)
Q Consensus       164 ~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~  239 (539)
                      .+++.++++++    ++++.++++|++.|++.|...+...+++.|++|+++|++++++++.+..+|..+++.+++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            99999999876    47889999999999999999999999999999999999999999999999999999888876655


Q ss_pred             cchhHHHHHhhHHHHHHHHHHhcc-cccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhh
Q 009250          240 PHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL  318 (539)
Q Consensus       240 ~~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (539)
                      .++||+.|++.+++.++..++.++ .+++|+........+.          ++   +..++..+..+++....+...+..
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~  245 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KN---DYPDDYNEKAEQELTAKQIFMQYV  245 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CC---C-------------CCTHHHHHHT
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh----------hh---hcccchhhccccccchhhHHHHHH
Confidence            444999999988888777665554 4454432111110000          00   000011111111222222334445


Q ss_pred             hccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchh
Q 009250          319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKL  398 (539)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~  398 (539)
                      ++++..+.......+.    .........+.+.++.+....+....+....+..+.+.++    .++.|++.||++|++.
T Consensus       246 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~  317 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFV----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG----TLLCGWMSDKVFRGNR  317 (447)
T ss_dssp             SSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTSTTCH
T ss_pred             HcCchHHHHHHHhhhh----hhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhh----hhhhhhhhhhcccccc
Confidence            5554444333322222    2234445556666666554433335555555555444333    9999999999998875


Q ss_pred             hHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCcccccchhhHHHHHHHHH-
Q 009250          399 LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC-  476 (539)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-  476 (539)
                      .........+............     ...........+..+++ .+..+....+..|.+|++.||++.|+.+.+.+++ 
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g  392 (447)
T d1pw4a_         318 GATGVFFMTLVTIATIVYWMNP-----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG  392 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCC-----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            5544444443333333322111     11222222222233333 2334556678889999999999999999998875 


Q ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeee
Q 009250          477 NFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV  516 (539)
Q Consensus       477 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  516 (539)
                      .+++|.+.|.+.|..|+...+.+.+++.+++.++.+.+.+
T Consensus       393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5668999999999999999888888777777766555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.9e-30  Score=248.72  Aligned_cols=393  Identities=12%  Similarity=-0.011  Sum_probs=254.8

Q ss_pred             HHHHHHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHH
Q 009250           88 HVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (539)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  166 (539)
                      .++.+.+..++..+......+.+|. +.+++|+  ++.++|++.+++.++..++++++|+++||+|||++++++..+..+
T Consensus         8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3556666667777777778888886 6778999  999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcHHH----HHHHHHHhhhchhhhhhhHHHHHHhcCCC--CccccchhhhHHHHHHHHHHHHHhcCCCCCCc
Q 009250          167 GAIISAQAHSLDE----MLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (539)
Q Consensus       167 ~~~~~~~a~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~  240 (539)
                      +.++..+..+...    .++.+++.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  165 (417)
T d1pv7a_          86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN  165 (417)
T ss_dssp             THHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccccc
Confidence            9998888766554    34556666666666555555555444433  34566777788888899999999988877654


Q ss_pred             chhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhc
Q 009250          241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE  320 (539)
Q Consensus       241 ~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (539)
                      + |+..+.......+...+..+..+++++..   .+.+                       +..+.++........+..+
T Consensus       166 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~~~~~~~~~~~  218 (417)
T d1pv7a_         166 N-QFVFWLGSGCALILAVLLFFAKTDAPSSA---TVAN-----------------------AVGANHSAFSLKLALELFR  218 (417)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHSSCCCSCSSS---CSSH-----------------------HHHSCCCCCCHHHHHHHTT
T ss_pred             c-cccccchhhHHHHHHHHHHHHhcccccch---hhhh-----------------------hhhhhcccccccccccccc
Confidence            3 44444444444444555555666654210   0000                       0011112222223333344


Q ss_pred             cCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCCh---hHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCch
Q 009250          321 EPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD---GALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQK  397 (539)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~  397 (539)
                      .+..+............    ..........+........   ............+..    .++..+.+++.||.++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~r~~~~~  290 (417)
T d1pv7a_         219 QPKLWFLSLYVIGVSCT----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN----ASIMFFAPLIINRIGGKN  290 (417)
T ss_dssp             SSHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHH----HHHHTTHHHHHHHHCHHH
T ss_pred             cccccchhhhhHHHHHH----HHhhhccccccccccccccccchhhhccccccccccc----ccchhhhhhhhccccccc
Confidence            44444333333222221    1112222222222222221   112222333333333    333899999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHH-HHHHHH
Q 009250          398 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVC  476 (539)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g  476 (539)
                      .+..+..+..++.+.+....        +.+.......+.+.+.+ ...+....++.|.+|++.|+++.|+.. ....+|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (417)
T d1pv7a_         291 ALLLAGTIMSVRIIGSSFAT--------SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred             chhhhHHHHHHhhhcccccc--------ccchhhHHHHHHHHHHH-HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence            99988888887777665521        22222222222222222 234566788899999999999999865 556799


Q ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHHH
Q 009250          477 NFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI  526 (539)
Q Consensus       477 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (539)
                      .+++|.+.|.+.|..|+...+++.+++.++..++..+.++++++.+..+.
T Consensus       362 ~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~  411 (417)
T d1pv7a_         362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRR  411 (417)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHh
Confidence            99999999999999999999999998888888877777777666665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=7.2e-15  Score=140.99  Aligned_cols=144  Identities=14%  Similarity=0.066  Sum_probs=129.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHH
Q 009250          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (539)
Q Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~  201 (539)
                      +....+...+...++..++..+.+++.||+|+|+++..+.++.+++.++..+.++.+.+++..++.|++.+...+...++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  336 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            44556778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccccchhhh-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccccc
Q 009250          202 ISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (539)
Q Consensus       202 i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  266 (539)
                      +.|.+|+++|+++.++. +....+|..+++.+++++.+..| |+..|++.+++.++..++..++.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999975 56778999999999999999888 999999988888877766655433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.8e-12  Score=123.29  Aligned_cols=154  Identities=13%  Similarity=0.064  Sum_probs=119.5

Q ss_pred             hhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH-----hhhcHHHHH
Q 009250          108 GPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA-----QAHSLDEML  181 (539)
Q Consensus       108 ~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~a~~~~~l~  181 (539)
                      ...|. +.+.++.  +..+.++..+.+.++..++.++.|++.||++||+..........+..+...     ...+.+..+
T Consensus       270 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (447)
T d1pw4a_         270 DWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  347 (447)
T ss_dssp             HHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             hhhhhhccccccc--ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHH
Confidence            33444 4455677  888889999999999999999999999999987654444433333222222     235777888


Q ss_pred             HHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHH-HHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009250          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG  260 (539)
Q Consensus       182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~  260 (539)
                      ++-++.|++.+...+....+..|.+|+++|+.+.|+.+....+ |.++++.+.+++.+..+ |+..|++.+...++..++
T Consensus       348 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence            8889999999889999999999999999999999999877766 56778999999988888 999998887777766655


Q ss_pred             hccc
Q 009250          261 MQFT  264 (539)
Q Consensus       261 ~~~~  264 (539)
                      ..++
T Consensus       427 ~~~~  430 (447)
T d1pw4a_         427 LIVV  430 (447)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443