Citrus Sinensis ID: 009270

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MAEKEESQNPTPPPPVTETEQPPSTATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAADSVEKVDEKEKQPPPVQPEEPKIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccEEEEEcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHccccccccccEEEEccccccHHHHHcccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEccccEEEEEEEEcccEEEEEEEEEEcccccEEEEEEcccccccccccccccccccccccEEEEEEEcccccccEEEEEEEEEEc
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHcccccccccccEEEEEccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEEEHHcHcccccccHHHHHHHHHHHHHHHHHccHHHHHHEEEEEccHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHccHHHccHHccccccccccccccccccccccEEEEcccccEEEEEEEccccEEEEEEEEcccEEEEEEEEEccccccEEEEEccccccccccccEEEccEEEccccEEEEEEEcccccccEEEEEEEEEcc
maekeesqnptppppvteteqppstatavkepavtsqteeqppaapavenRSLAAMMEKeasapektkeDVVVAADSvekvdekekqpppvqpeepkipqtlisfkeesnviadLSDSERKALQELKQLVQEALNnrhftspkeeekekqpppssdapktdgpssesdksteikppqeqqapaevappppqppaeeevsiwgvpllkddrtDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALlnedlgddlEKVVFmhgfdrdghpvcynvygefqnkqlyAKTFSDEEKRMKFLRWRIQFLERSIRKlnfrpggvstIFQVndlknspgpgkrELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMispfmtqrtkskfvfagpskstetlfkyispehvpiqygglsvdycdcnpeftiddpateitvkpatkqNVEIIIYEKCTVVWEIRVVGWEvsygaefvpeakdKYTIIiqkptklsptdepvvcqrfkvdeLGKILLtvdnptskkkkLLYRFKVEPF
maekeesqnptppppvteteqppsTATAVKEPavtsqteeqppaapaVENRSLAAMMEKeasapektkedvVVAADSVekvdekekqpppvqpeepkipqTLISFKEESNVIADLSDSERKALQELKQLVQEALNnrhftspkeeekekqpppssdapktdgpSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKflrardfkvrdaFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSirklnfrpggvstifqvndlknspgPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIddpateitvkpatkqnveiiIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQkptklsptdepvVCQRFkvdelgkilltvdnptskkkkllyrfkvepf
MAEKeesqnptppppvteteqppstATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAADSVEKVDekekqpppvqpeepkipqTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTspkeeekekqpppssDAPKTDGPSSESDKSTEIKppqeqqapaevappppqppaeeevSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF
*****************************************************************************************************************************************************************************************************VSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDL**********LRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTV*******************
****************************************************************************************************************************************************************************************************EVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFV*************************CQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF
**********************************************AVENRSLAAMM*************VVVAA*******************EPKIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHF*********************************************************EVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF
******************************************************************************************************************************K***********************************PSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEKEESQNPTPPPPVTETEQPPSTATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAADSVEKVDEKEKQPPPVQPEEPKIPQTLISFKEESNVxxxxxxxxxxxxxxxxxxxxxxxxxRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
Q56Z59490 Patellin-3 OS=Arabidopsis yes no 0.830 0.912 0.596 1e-176
Q9M0R2668 Patellin-5 OS=Arabidopsis no no 0.754 0.607 0.608 1e-170
Q56ZI2683 Patellin-2 OS=Arabidopsis no no 0.617 0.486 0.533 1e-108
Q56WK6573 Patellin-1 OS=Arabidopsis no no 0.607 0.570 0.520 1e-100
Q9SCU1409 Patellin-6 OS=Arabidopsis no no 0.607 0.799 0.521 1e-100
Q94C59540 Patellin-4 OS=Arabidopsis no no 0.613 0.611 0.488 2e-97
Q6C9R9362 Phosphatidylinositol tran yes no 0.371 0.552 0.308 7e-22
A5DEQ9336 Phosphatidylinositol tran N/A no 0.386 0.619 0.310 2e-20
A3LPR9328 Phosphatidylinositol tran no no 0.371 0.609 0.306 2e-17
P0CR45297 Phosphatidylinositol tran N/A no 0.420 0.760 0.269 4e-17
>sp|Q56Z59|PATL3_ARATH Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2 Back     alignment and function desciption
 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 312/523 (59%), Positives = 369/523 (70%), Gaps = 76/523 (14%)

Query: 16  VTETEQPPSTATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAA 75
           VTET  PP TA    +P   +  E  PP     E     A  EK+    E ++++V    
Sbjct: 44  VTET-NPPETADTTTKPEEETAAEHHPPTVTETE----TASTEKQEVKDEASQKEVAEEK 98

Query: 76  DSVEKVDEKEKQPPPVQPEEPKIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALN 135
            S+                   IPQ L SFKEES+ ++DLS+SE+K+L ELK LV+EAL+
Sbjct: 99  KSM-------------------IPQNLGSFKEESSKLSDLSNSEKKSLDELKHLVREALD 139

Query: 136 NRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAE 195
           N  F                    T+ P                                
Sbjct: 140 NHQF--------------------TNTP-------------------------------- 147

Query: 196 EEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGD 255
           EEV IWG+PLL+DDR+DV+LLKFLRAR+FKV+D+F M+KNTI+WRK+F I+ L+ EDL D
Sbjct: 148 EEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLVD 207

Query: 256 DLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKL 315
           DL+KVVFMHG DR+GHPVCYNVYGEFQNK+LY KTFSDEEKR  FLR RIQFLERSIRKL
Sbjct: 208 DLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKL 267

Query: 316 NFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
           +F  GGVSTIFQVND+KNSPG GK+ELR ATKQA++LLQDNYPEFV KQ FINVPWWYL 
Sbjct: 268 DFSSGGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYLV 327

Query: 376 FHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDD 435
           F+T+I PFMT R+KSK VFAGPS+S ETLFKYISPE VP+QYGGLSVD CDCNP+F+++D
Sbjct: 328 FYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLED 387

Query: 436 PATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKL 495
            A+EITVKP TKQ VEIIIYEKC +VWEIRV GWEVSY AEFVPE KD YT++IQKP K+
Sbjct: 388 SASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKM 447

Query: 496 SPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF 538
            P+DEPV+   FKV+ELGK+LLTVDNPTSKKKKL+YRF V+P 
Sbjct: 448 RPSDEPVLTHSFKVNELGKVLLTVDNPTSKKKKLVYRFNVKPL 490
Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M0R2|PATL5_ARATH Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2 Back     alignment and function description
>sp|Q56ZI2|PATL2_ARATH Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2 Back     alignment and function description
>sp|Q56WK6|PATL1_ARATH Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SCU1|PATL6_ARATH Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1 Back     alignment and function description
>sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2 Back     alignment and function description
>sp|Q6C9R9|SFH5_YARLI Phosphatidylinositol transfer protein SFH5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SFH5 PE=3 SV=1 Back     alignment and function description
>sp|A5DEQ9|SFH5_PICGU Phosphatidylinositol transfer protein SFH5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SFH5 PE=3 SV=2 Back     alignment and function description
>sp|A3LPR9|SFH5_PICST Phosphatidylinositol transfer protein SFH5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SFH5 PE=3 SV=2 Back     alignment and function description
>sp|P0CR45|SFH5_CRYNB Phosphatidylinositol transfer protein SFH5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SFH5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
255561576587 Patellin-5, putative [Ricinus communis] 0.910 0.834 0.710 0.0
224145127446 predicted protein [Populus trichocarpa] 0.776 0.937 0.720 0.0
359493327530 PREDICTED: patellin-3-like [Vitis vinife 0.910 0.924 0.650 0.0
147859031591 hypothetical protein VITISV_013162 [Viti 0.903 0.822 0.652 0.0
449441808530 PREDICTED: patellin-3-like [Cucumis sati 0.912 0.926 0.609 0.0
224136025423 predicted protein [Populus trichocarpa] 0.728 0.926 0.708 1e-180
15218383490 patellin-3 [Arabidopsis thaliana] gi|780 0.830 0.912 0.596 1e-174
297841957497 SEC14 cytosolic factor family protein [A 0.737 0.798 0.662 1e-173
15081614390 At1g72160/T9N14_8 [Arabidopsis thaliana] 0.723 0.997 0.664 1e-170
30680992 668 patellin-5 [Arabidopsis thaliana] gi|780 0.754 0.607 0.608 1e-169
>gi|255561576|ref|XP_002521798.1| Patellin-5, putative [Ricinus communis] gi|223539011|gb|EEF40608.1| Patellin-5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/522 (71%), Positives = 419/522 (80%), Gaps = 32/522 (6%)

Query: 49  ENRSLAAMMEKEASAP------------EKTKEDVVVAADSVEKVDEKEKQPPPVQPEEP 96
           E++SLAAMMEKE S              EKT+  V      V++VD   K+    + ++ 
Sbjct: 64  ESKSLAAMMEKEESQSSPPLSSLEEKNDEKTESLVTKEEVVVDEVDVAGKEKQSEEQQQQ 123

Query: 97  KIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSP-------KEEEKEK 149
           K+PQTL+SFKEESN++ADLS+SE+KAL E K LVQEALN   F+S        KEEEK  
Sbjct: 124 KVPQTLVSFKEESNIVADLSESEKKALHEFKNLVQEALNTHQFSSSPPPSPPQKEEEKTA 183

Query: 150 QPPPSSDAPKTDGPSSESDKSTEIKPP--QEQQAPAEVAPPPPQ--------PPAE---E 196
           Q  P+     T+   S+SD STEIK P  QE Q P     P  +        P  E   E
Sbjct: 184 QKTPAEATSTTEVSVSKSDVSTEIKTPTDQEYQEPKVEENPSKETQETKQEDPKVESLPE 243

Query: 197 EVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDD 256
           E+SIWG+PLLKDDR+DVILLKFLRARDFKV+DAFVMIKNTI+WRK+F I+ L++EDLGDD
Sbjct: 244 EISIWGIPLLKDDRSDVILLKFLRARDFKVKDAFVMIKNTIRWRKEFKIDELIDEDLGDD 303

Query: 257 LEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLN 316
           LEK+VFMHG DR+GHPVCYNVYGEFQNK+LY K F+DEEKRMKFLRWRIQFLERSIRKL+
Sbjct: 304 LEKIVFMHGHDREGHPVCYNVYGEFQNKELYQKAFADEEKRMKFLRWRIQFLERSIRKLD 363

Query: 317 FRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAF 376
           F PGG+STIFQVNDLKNSPGPGK+ELR+AT++ALQLLQDNYPEFVAKQVFINVPWWYLAF
Sbjct: 364 FSPGGISTIFQVNDLKNSPGPGKKELRLATRKALQLLQDNYPEFVAKQVFINVPWWYLAF 423

Query: 377 HTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDP 436
           +TMISPFMTQRTKSKFVFAGPSKS ETLFKYIS E VPIQYGGLSVDYCDCNPEFT+ DP
Sbjct: 424 YTMISPFMTQRTKSKFVFAGPSKSPETLFKYISAEQVPIQYGGLSVDYCDCNPEFTVADP 483

Query: 437 ATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLS 496
           ATEITVKPATKQ VEIIIYEKC +VWE+RVVGW+VSYGAEF P+AKD YT+IIQKPTKLS
Sbjct: 484 ATEITVKPATKQTVEIIIYEKCVIVWELRVVGWDVSYGAEFAPDAKDAYTVIIQKPTKLS 543

Query: 497 PTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF 538
           PTDEPV+   FKV ELGKILLTVDNPTSKKKKLLYRFK+ PF
Sbjct: 544 PTDEPVITSSFKVGELGKILLTVDNPTSKKKKLLYRFKINPF 585

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224145127|ref|XP_002325536.1| predicted protein [Populus trichocarpa] gi|222862411|gb|EEE99917.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493327|ref|XP_002265124.2| PREDICTED: patellin-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859031|emb|CAN80423.1| hypothetical protein VITISV_013162 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441808|ref|XP_004138674.1| PREDICTED: patellin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224136025|ref|XP_002327362.1| predicted protein [Populus trichocarpa] gi|222835732|gb|EEE74167.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15218383|ref|NP_177361.1| patellin-3 [Arabidopsis thaliana] gi|78099067|sp|Q56Z59.2|PATL3_ARATH RecName: Full=Patellin-3 gi|12323663|gb|AAG51796.1|AC067754_12 cytosolic factor, putative; 19554-17768 [Arabidopsis thaliana] gi|332197162|gb|AEE35283.1| patellin-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841957|ref|XP_002888860.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297334701|gb|EFH65119.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15081614|gb|AAK82462.1| At1g72160/T9N14_8 [Arabidopsis thaliana] gi|22137076|gb|AAM91383.1| At1g72160/T9N14_8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680992|ref|NP_192655.2| patellin-5 [Arabidopsis thaliana] gi|78099069|sp|Q9M0R2.2|PATL5_ARATH RecName: Full=Patellin-5 gi|110738242|dbj|BAF01050.1| hypothetical protein [Arabidopsis thaliana] gi|332657330|gb|AEE82730.1| patellin-5 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2207016490 AT1G72160 "AT1G72160" [Arabido 0.628 0.689 0.772 6.9e-158
TAIR|locus:2141563668 AT4G09160 "AT4G09160" [Arabido 0.630 0.507 0.772 3.3e-157
TAIR|locus:2009502683 PATL2 "PATELLIN 2" [Arabidopsi 0.611 0.481 0.529 7.2e-107
TAIR|locus:2207001573 PATL1 "AT1G72150" [Arabidopsis 0.607 0.570 0.520 4.6e-101
TAIR|locus:2098282409 AT3G51670 "AT3G51670" [Arabido 0.609 0.801 0.523 2.9e-97
TAIR|locus:2204594540 AT1G30690 [Arabidopsis thalian 0.605 0.603 0.494 6e-97
DICTYBASE|DDB_G0270022444 DDB_G0270022 "cellular retinal 0.496 0.601 0.289 1.1e-25
SGD|S000004684304 SEC14 "Phosphatidylinositol/ph 0.388 0.687 0.304 4.4e-21
CGD|CAL0003685301 SEC14 [Candida albicans (taxid 0.399 0.714 0.298 4.9e-18
UNIPROTKB|P46250301 SEC14 "SEC14 cytosolic factor" 0.399 0.714 0.298 4.9e-18
TAIR|locus:2207016 AT1G72160 "AT1G72160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1435 (510.2 bits), Expect = 6.9e-158, Sum P(2) = 6.9e-158
 Identities = 261/338 (77%), Positives = 301/338 (89%)

Query:   200 IWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEK 259
             IWG+PLL+DDR+DV+LLKFLRAR+FKV+D+F M+KNTI+WRK+F I+ L+ EDL DDL+K
Sbjct:   152 IWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLVDDLDK 211

Query:   260 VVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRP 319
             VVFMHG DR+GHPVCYNVYGEFQNK+LY KTFSDEEKR  FLR RIQFLERSIRKL+F  
Sbjct:   212 VVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKLDFSS 271

Query:   320 GGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTM 379
             GGVSTIFQVND+KNSPG GK+ELR ATKQA++LLQDNYPEFV KQ FINVPWWYL F+T+
Sbjct:   272 GGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYLVFYTV 331

Query:   380 ISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATE 439
             I PFMT R+KSK VFAGPS+S ETLFKYISPE VP+QYGGLSVD CDCNP+F+++D A+E
Sbjct:   332 IGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASE 391

Query:   440 ITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTD 499
             ITVKP TKQ VEIIIYEKC +VWEIRV GWEVSY AEFVPE KD YT++IQKP K+ P+D
Sbjct:   392 ITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSD 451

Query:   500 EPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEP 537
             EPV+   FKV+ELGK+LLTVDNPTSKKKKL+YRF V+P
Sbjct:   452 EPVLTHSFKVNELGKVLLTVDNPTSKKKKLVYRFNVKP 489
GO:0005215 "transporter activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2141563 AT4G09160 "AT4G09160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009502 PATL2 "PATELLIN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207001 PATL1 "AT1G72150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098282 AT3G51670 "AT3G51670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204594 AT1G30690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270022 DDB_G0270022 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000004684 SEC14 "Phosphatidylinositol/phosphatidylcholine transfer protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0003685 SEC14 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P46250 SEC14 "SEC14 cytosolic factor" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56Z59PATL3_ARATHNo assigned EC number0.59650.83080.9122yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 2e-38
smart00516158 smart00516, SEC14, Domain in homologues of a S 3e-29
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 3e-28
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 4e-08
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 6e-07
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 6e-05
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 8e-05
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 3e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 5e-04
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.001
PRK08119382 PRK08119, PRK08119, flagellar motor switch protein 0.002
PRK08691709 PRK08691, PRK08691, DNA polymerase III subunits ga 0.003
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.004
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information 
 Score =  137 bits (347), Expect = 2e-38
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 256 DLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKL 315
           +L KV ++ G D++G PV     G        +K+   EE     LR+ +  LE+ +++ 
Sbjct: 6   ELGKVGYLGGRDKEGRPVLIIRAGNK----DLSKSLDSEE----LLRYLVYTLEKLLQED 57

Query: 316 NFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
           + +  G   I    DLK              K+ L++LQDNYPE +     IN PW++  
Sbjct: 58  DEQVEGFVVII---DLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKV 114

Query: 376 FHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGL 420
              ++ PF++++T+ K VF G  K  E L KYI  E +P +YGG 
Sbjct: 115 LWKIVKPFLSEKTRKKIVFLGSDK--EELLKYIDKEQLPEEYGGT 157

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated Back     alignment and domain information
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.95
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.93
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.9
PF13897136 GOLD_2: Golgi-dynamics membrane-trafficking 99.86
KOG3878469 consensus Protein involved in maintenance of Golgi 99.47
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.34
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.71
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 97.74
KOG3287 236 consensus Membrane trafficking protein, emp24/gp25 97.49
KOG1693209 consensus emp24/gp25L/p24 family of membrane traff 95.79
KOG1692201 consensus Putative cargo transport protein EMP24 ( 94.97
PF01105183 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro 90.75
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-37  Score=319.02  Aligned_cols=216  Identities=31%  Similarity=0.522  Sum_probs=181.4

Q ss_pred             CCCCCC-CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCccCccccc-ccccc--eEEeeccCCCCCcEEEEec
Q 009270          203 VPLLKD-DRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLG-DDLEK--VVFMHGFDRDGHPVCYNVY  278 (538)
Q Consensus       203 ~pll~~-~~~D~~LLRFLRArkfdVekA~~mL~~~l~WRk~~~iD~i~~~~~~-~el~k--~~~l~G~Dk~GrPV~~~~~  278 (538)
                      .|++++ ..+|.+||||||||+||+++|.+||.+++.||+++++|.|...... .++.+  ...++|.|++|+||++.+.
T Consensus        35 ~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~  114 (317)
T KOG1471|consen   35 KPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERL  114 (317)
T ss_pred             ccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEEEecc
Confidence            345664 7899999999999999999999999999999999999998876221 33333  2468999999999999999


Q ss_pred             CccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCeeEEEEEEeCCCCCCCCch-hHHHHHHHHHHh
Q 009270          279 GEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKL-----NFRPGGVSTIFQVNDLKNSPGPGKR-ELRIATKQALQL  352 (538)
Q Consensus       279 G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l-----~~~~~~v~~iv~IiDl~g~sgl~~~-~l~~~~k~il~l  352 (538)
                      |..|.++++..+.     ..+++++.+..+|+.++.+     .....+++++++|+||+|+++..+. ..+..++.++.+
T Consensus       115 g~~~~~~l~~~~~-----~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~  189 (317)
T KOG1471|consen  115 GKIDPKGLLKRTG-----SLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKI  189 (317)
T ss_pred             CCCCcccceeecc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHH
Confidence            9999999988763     4677777777777765322     1124689999999999987544332 236778999999


Q ss_pred             hccccccccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHhcccCCCCccccCCCCcCCC
Q 009270          353 LQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDY  424 (538)
Q Consensus       353 lq~~YPE~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~LP~~yGG~~~d~  424 (538)
                      +|+|||++++++||||+|++|+++|++|||||+++|++||+++++ ++.++|+++|++++||.+|||++.+.
T Consensus       190 ~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~-~~~~~L~k~i~~~~LP~~yGG~~~~~  260 (317)
T KOG1471|consen  190 LQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHS-KDKESLLKYIPPEVLPEEYGGTCGDL  260 (317)
T ss_pred             HHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCC-CchhhhhhhCCHhhCccccCCCcccc
Confidence            999999999999999999999999999999999999999995543 69999999999999999999999863

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking Back     alignment and domain information
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 2e-17
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-17
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-17
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 2e-15
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 3e-15
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 4e-15
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 4e-15
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 2e-10
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 4e-09
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 12/218 (5%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV------FMHG 265
           D  LL+FLRAR F V+ A  M +N  +WRKD+G + +L +D   D + ++      + H 
Sbjct: 52  DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL-QDFHYDEKPLIAKFYPQYYHK 110
Query: 266 FDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGG--VS 323
            D+DG PV +   G     ++     + EE+ +K L W  + + +       R  G  V 
Sbjct: 111 TDKDGRPVYFEELGAVNLHEM--NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVE 168
Query: 324 TIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPF 383
           T   + DLK         +    ++A  + Q+ YPE + K   IN P+ +     +  PF
Sbjct: 169 TSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 228
Query: 384 MTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLS 421
           +   T SK    G S   E L K I  E++P+++GG S
Sbjct: 229 LDPVTVSKIFILGSSYQKE-LLKQIPAENLPVKFGGKS 265
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 3e-81
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-64
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 8e-63
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 3e-35
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 2e-32
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
 Score =  258 bits (661), Expect = 3e-81
 Identities = 76/370 (20%), Positives = 149/370 (40%), Gaps = 39/370 (10%)

Query: 200 IWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEK 259
           +  V     +  D  LL++LRAR F ++ +  M++  +++RK   I+ +++    + +++
Sbjct: 23  VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQ 82

Query: 260 VV--FMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNF 317
            +   M G+D DG PV Y++ G    K L       +      LR +++  E  +++   
Sbjct: 83  YLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD-----LLRTKMRECELLLQECAH 137

Query: 318 R----PGGVSTIFQVNDLKN-SPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWW 372
           +       V TI  + D +        +    A  + L + ++NYPE + +   +  P  
Sbjct: 138 QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKL 197

Query: 373 YLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDY-----CDC 427
           +   + +I PF+++ T+ K +  G     E L K+ISP+ VP++YGG   D      C  
Sbjct: 198 FPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKS 256

Query: 428 NPEFTIDDP-------------ATEITVKPATKQNVEIIIYEK-CTVVWEIRVVGWEVSY 473
              +  D P                + +   +   VE  I    C + W+    G +V +
Sbjct: 257 KINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGF 316

Query: 474 GAEFVPEAKDK----YTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTS--KKK 527
           G     +  ++        +    + +    P         + G  +L  DN  S    K
Sbjct: 317 GIFLKTKMGERQRAGEMTEVLPNQRYNSHLVP-EDGTLTCSDPGIYVLRFDNTYSFIHAK 375

Query: 528 KLLYRFKVEP 537
           K+ +  +V  
Sbjct: 376 KVNFTVEVLL 385
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 98.89
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.66
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=1.2e-70  Score=583.92  Aligned_cols=350  Identities=24%  Similarity=0.404  Sum_probs=298.6

Q ss_pred             cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcchhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCCCCCCC
Q 009270          109 SNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPP  188 (538)
Q Consensus       109 s~~~~~L~~~e~~aL~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (538)
                      ||++++|++.|+++|++||+.|++....                                                    
T Consensus         2 ~g~~~~l~~~q~~~l~~lr~~l~~~~~~----------------------------------------------------   29 (403)
T 1olm_A            2 SGRVGDLSPRQKEALAKFRENVQDVLPA----------------------------------------------------   29 (403)
T ss_dssp             CSBTTBCCHHHHHHHHHHHHHHGGGGGG----------------------------------------------------
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHhhccC----------------------------------------------------
Confidence            7999999999999999999999874221                                                    


Q ss_pred             CCCCCCcchhhhcCCCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCccCccccccc-ccc--eEEeec
Q 009270          189 PPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDD-LEK--VVFMHG  265 (538)
Q Consensus       189 ~~~~~~~~~~~~wg~pll~~~~~D~~LLRFLRArkfdVekA~~mL~~~l~WRk~~~iD~i~~~~~~~e-l~k--~~~l~G  265 (538)
                                       + +..+|.+||||||||+||+++|.+||+++++||++++++.+.. +..++ +.+  ..+++|
T Consensus        30 -----------------l-~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g   90 (403)
T 1olm_A           30 -----------------L-PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCG   90 (403)
T ss_dssp             -----------------S-SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEE
T ss_pred             -----------------C-CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeec
Confidence                             1 2478999999999999999999999999999999999988775 33222 221  235789


Q ss_pred             cCCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeeEEEEEEeCCCCCCCCchh
Q 009270          266 FDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR----PGGVSTIFQVNDLKNSPGPGKRE  341 (538)
Q Consensus       266 ~Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~----~~~v~~iv~IiDl~g~sgl~~~~  341 (538)
                      +|++||||+|+++|++|++++++..     +..+++|++++++|.+++.+..+    +.+++++++|+||+|++...+..
T Consensus        91 ~Dk~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~  165 (403)
T 1olm_A           91 YDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWK  165 (403)
T ss_dssp             ECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCH
T ss_pred             cCCCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhh
Confidence            9999999999999999999887643     36899999999999999876543    34689999999999774222211


Q ss_pred             -HHHHHHHHHHhhccccccccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHhcccCCCCccccCCCC
Q 009270          342 -LRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGL  420 (538)
Q Consensus       342 -l~~~~k~il~llq~~YPE~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~LP~~yGG~  420 (538)
                       ....++.++.++|+|||++|+++||||+||+|.++|++|||||+++|++||+|+++ ++.+.|.+||++++||++|||+
T Consensus       166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~  244 (403)
T 1olm_A          166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGT  244 (403)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSS
T ss_pred             HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCC
Confidence             25678999999999999999999999999999999999999999999999999986 6888999999999999999999


Q ss_pred             cCCCCCCCCCccc------------------cCCC-ccccccCCCceeEEEEEe-cCeeEEEEEEEecceeeEEEEEeec
Q 009270          421 SVDYCDCNPEFTI------------------DDPA-TEITVKPATKQNVEIIIY-EKCTVVWEIRVVGWEVSYGAEFVPE  480 (538)
Q Consensus       421 ~~d~~d~dp~c~~------------------~d~~-~~v~V~~gs~~~v~i~V~-~g~~L~WeF~t~~~DI~Fgi~f~~~  480 (538)
                      +.+ .++++.|..                  .+.. +.++|++|++++|+|+|. +|++|+|+|+|+++||+|||+|.+.
T Consensus       245 ~~~-~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~~~~~  323 (403)
T 1olm_A          245 MTD-PDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTK  323 (403)
T ss_dssp             BCC-TTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC--
T ss_pred             cCC-CCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEEEecc
Confidence            987 678888852                  1223 349999999999999998 5999999999999999999999853


Q ss_pred             C----CCceEEEEecCcccCCCCcceecCeEEcCcCcEEEEEEECCCC--CceeEEEEEEeec
Q 009270          481 A----KDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTS--KKKKLLYRFKVEP  537 (538)
Q Consensus       481 ~----~g~~~~~V~~~~r~~~~~~pve~Gs~~~~epG~yvL~fDNs~S--~sKkv~Y~i~v~~  537 (538)
                      .    +++....|+|..|+.||..+ ++|+|+|.+||+|+|+|||+||  ++|+|.|+|+|++
T Consensus       324 ~~~~~~~~~~~~v~p~~r~~~~~~~-~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~  385 (403)
T 1olm_A          324 MGERQRAGEMTEVLPNQRYNSHLVP-EDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  385 (403)
T ss_dssp             --CCCCGGGSEEEEEEEEECTTTSC-EEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             cccccCCCcceEEeeeeeecCcccc-ccCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeC
Confidence            2    21334567789999999999 8999999999999999999999  8999999999975
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 538
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 7e-35
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 5e-33
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 4e-21
d1olma2119 b.132.1.1 (A:275-393) Supernatant protein factor ( 3e-14
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 2e-13
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 2e-11
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 8e-11
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 7e-35
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 263 MHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR---- 318
           M G+D DG PV Y++ G    K L       +      LR +++  E  +++   +    
Sbjct: 13  MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD-----LLRTKMRECELLLQECAHQTTKL 67

Query: 319 PGGVSTIFQVNDLKN-SPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFH 377
              V TI  + D +        +    A  + L + ++NYPE + +   +  P  +   +
Sbjct: 68  GRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAY 127

Query: 378 TMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFT 432
            +I PF+++ T+ K +  G +   E L K+ISP+ VP++YGG   D  D NP+  
Sbjct: 128 NLIKPFLSEDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDP-DGNPKCK 180
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 99.97
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.94
d1olma2119 Supernatant protein factor (SPF), C-terminal domai 99.91
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.7
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.64
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.29
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-34  Score=272.97  Aligned_cols=165  Identities=28%  Similarity=0.447  Sum_probs=144.0

Q ss_pred             EeeccCCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeeEEEEEEeCCCCCCC
Q 009270          262 FMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR----PGGVSTIFQVNDLKNSPGP  337 (538)
Q Consensus       262 ~l~G~Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~----~~~v~~iv~IiDl~g~sgl  337 (538)
                      .+||+|++||||+|+++|++|++++++..     +.++++++.++.+|.+++.+..+    +++++++++|+||+|++..
T Consensus        12 ~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~   86 (199)
T d1olma3          12 GMCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLK   86 (199)
T ss_dssp             EEEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGG
T ss_pred             ccccCCCCCCEEEEEecccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchh
Confidence            48999999999999999999999987654     35789999999999998776532    4678899999999977422


Q ss_pred             Cchh-HHHHHHHHHHhhccccccccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHhcccCCCCcccc
Q 009270          338 GKRE-LRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQ  416 (538)
Q Consensus       338 ~~~~-l~~~~k~il~llq~~YPE~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~LP~~  416 (538)
                      .+.. ..+.++.++.++|+|||++|+++||||+|++|+++|+++||||+++|++||+|+++ ++.+.|.++|++++||++
T Consensus        87 ~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~-~~~~~L~~~i~~~~lP~~  165 (199)
T d1olma3          87 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVE  165 (199)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGG
T ss_pred             hhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCC-CCHHHHHHhCCHhhCCHH
Confidence            2222 25778999999999999999999999999999999999999999999999999985 678999999999999999


Q ss_pred             CCCCcCCCCCCCCCccc
Q 009270          417 YGGLSVDYCDCNPEFTI  433 (538)
Q Consensus       417 yGG~~~d~~d~dp~c~~  433 (538)
                      |||++++ .++|++|..
T Consensus       166 yGGt~~~-~~~~~~~~~  181 (199)
T d1olma3         166 YGGTMTD-PDGNPKCKS  181 (199)
T ss_dssp             GTSSBCC-TTCCTTCTT
T ss_pred             hCCCCCC-CCCChhhhc
Confidence            9999987 678888864
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure