Citrus Sinensis ID: 009274
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 538 | 2.2.26 [Sep-21-2011] | |||||||
| P90648 | 732 | Myosin heavy chain kinase | yes | no | 0.420 | 0.308 | 0.304 | 3e-19 | |
| Q93794 | 587 | F-box/WD repeat-containin | yes | no | 0.5 | 0.458 | 0.232 | 2e-14 | |
| P87053 | 605 | F-box/WD repeat-containin | yes | no | 0.453 | 0.403 | 0.270 | 3e-14 | |
| Q61FW2 | 589 | F-box/WD repeat-containin | N/A | no | 0.477 | 0.436 | 0.242 | 4e-14 | |
| Q922B6 | 594 | E3 ubiquitin-protein liga | yes | no | 0.421 | 0.382 | 0.290 | 5e-14 | |
| Q6Q0C0 | 670 | E3 ubiquitin-protein liga | yes | no | 0.421 | 0.338 | 0.290 | 1e-13 | |
| Q8MY12 | 780 | Myosin heavy chain kinase | no | no | 0.486 | 0.335 | 0.245 | 3e-13 | |
| O14170 | 703 | WD repeat-containing prot | no | no | 0.405 | 0.310 | 0.249 | 1e-12 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.481 | 0.153 | 0.25 | 1e-12 | |
| P42527 | 1146 | Myosin heavy chain kinase | no | no | 0.345 | 0.162 | 0.289 | 1e-12 |
| >sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 20/246 (8%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH V + +LFS S D SI VW LK + T +GHD V V+ D+
Sbjct: 498 LKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDK---Y 554
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
SG S I VW + L+ K+ E R + L SG+YL++GS D+TIK
Sbjct: 555 LFSGSSDKTIKVWDL------KTLECKYTLESHAR--AVKTLCISGQYLFSGSNDKTIKV 606
Query: 367 WSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426
W L + T+ GH V+T+ + LYSGS D TIR+W+L L G
Sbjct: 607 WDLKTFRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLR----GHD 662
Query: 427 SSVLSLTAVQHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSV--FAVFLEGKWLFTGGW 482
V + L + + +IK+W + +++ H +V AV+ + K + +
Sbjct: 663 RWVEHMVICDKLLFTASDDNTIKIWDLETLRCNTTLEGHNATVQCLAVWEDKKCVISCSH 722
Query: 483 DKTVSV 488
D+++ V
Sbjct: 723 DQSIRV 728
|
Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 7 |
| >sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 32/301 (10%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+F LQ D A +L + +K+ W+ +GH+ V+ + + +
Sbjct: 210 RFLKLQKFGDIFERAADKSRYLRADKIEKN---WNANPIMGSAVLRGHEDHVITCMQIHD 266
Query: 304 DQPLCISGDSGGGIFVWSFS-----FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTG 358
D + ++G + VW + L W + ++ GRY+ +G
Sbjct: 267 D--VLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGVWTSQ----------ISQCGRYIVSG 314
Query: 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418
S DRT+K WS +DG+L T+ GH S V +A+ +L +GSRD T+R+W + L L
Sbjct: 315 STDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATL 374
Query: 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKW 476
G ++V + T+V ++K+W + ++++ H V+++ E +
Sbjct: 375 H----GHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESER 430
Query: 477 --LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGC-ADRTVKV 533
+ +G D ++ V + E +E V + + +T+ + +G + V C AD V+V
Sbjct: 431 SIVCSGSLDTSIRVWDFTRPEGQECV---ALLQGHTSLTSGMQLRGNILVSCNADSHVRV 487
Query: 534 Y 534
+
Sbjct: 488 W 488
|
Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying. Caenorhabditis elegans (taxid: 6239) |
| >sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 26/270 (9%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH VT L L S S DK+I +W+ + + GH V+ + + D L
Sbjct: 309 LEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTF---DSTL 365
Query: 308 CISGDSGGGIFVWSFS-----FPLGHE-PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361
+SG + + +W FS GH P+ N + R G+ + +GS D
Sbjct: 366 LVSGSADCTVKLWHFSGGKRITLRGHTGPV---NSVRIIRDRGL---------VLSGSDD 413
Query: 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEED 421
TIK WSL T T S H V +LA+ + L+S S DGTI+ W + + L
Sbjct: 414 STIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKKCVHTL--- 470
Query: 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGG 481
G + V + A L+ G +KVW + + +++ H V +V L + +G
Sbjct: 471 -FGHIEGVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNHSEPVTSVALGDCEVVSGS 529
Query: 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSV 511
D + + L + E + T ++P S+
Sbjct: 530 EDGKIYLW-LFNNAPNESPVSTQSVPISSL 558
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 139/318 (43%), Gaps = 61/318 (19%)
Query: 223 DQARAAGGVKDLVNGLSKGNVKFKDLQGHRD-CVTGLAVGGGFLFSSSFDKSIHVWSLKD 281
D++R G K N S+ + L+GH + +T + + L + S D ++ VWS+ D
Sbjct: 228 DKSRYLRGEKIEKNWHSRPIMGSAILRGHEEHVITCMQIHNDLLVTGSDDNTLKVWSIDD 287
Query: 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341
HT GH SGG VW+
Sbjct: 288 GEVKHTLNGH---------------------SGG---VWTSQ------------------ 305
Query: 342 YSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRD 401
++ GRY+ +GS DRT+K W DG L T+ GH S V +A+ N L +GSRD
Sbjct: 306 ------ISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAMANTTLVTGSRD 359
Query: 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKS 459
T+R+W + + L+ G ++V + + +V ++K+W + K +++
Sbjct: 360 CTLRVWDIETGLHVRTLQ----GHQAAVRCVQFDGNIVVSGGYDFTVKIWDAFSGKCLRT 415
Query: 460 MQTHKGSVFAVFLEGKW--LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY 517
+ H V+++ E + + +G D ++ V + + E +E + + + +T+ +
Sbjct: 416 LIGHSNRVYSLLYESERSIVCSGSLDTSIRVWDFSRPEGQELI---AFLSGHTSLTSGMQ 472
Query: 518 WQGKLFVGC-ADRTVKVY 534
+G + V C AD V+V+
Sbjct: 473 LRGNILVSCNADSHVRVW 490
|
Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying. Caenorhabditis briggsae (taxid: 6238) |
| >sp|Q922B6|TRAF7_MOUSE E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus GN=Traf7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 357 KTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 413
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 414 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 466
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L +
Sbjct: 467 IWDI--RTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTL----T 520
Query: 424 GAVSSVLSLTAV----QHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWL 477
G V +V +L + Q + + S++VW D + +++ H+GSV A+ + L
Sbjct: 521 GHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRL 580
Query: 478 FTGGWDKTVSV 488
F+G D TV V
Sbjct: 581 FSGAVDSTVKV 591
|
E3 ubiquitin ligase capable of auto-ubiquitination, following phosphorylation by MAP3K3. Potentiates MEKK3-mediated activation of the NF-kappa-B, JUN/AP1 and DDIT3 transcriptional regulators. Induces apoptosis when overexpressed. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q6Q0C0|TRAF7_HUMAN E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 433 KTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 489
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 490 NVLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 542
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L +
Sbjct: 543 IWDI--RTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTL----T 596
Query: 424 GAVSSVLSLTAV----QHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWL 477
G V +V +L + Q + + S++VW D + +++ H+GSV A+ + L
Sbjct: 597 GHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRL 656
Query: 478 FTGGWDKTVSV 488
F+G D TV V
Sbjct: 657 FSGAVDSTVKV 667
|
E3 ubiquitin ligase capable of auto-ubiquitination, following phosphorylation by MAP3K3. Potentiates MEKK3-mediated activation of the NF-kappa-B, JUN/AP1 and DDIT3 transcriptional regulators. Induces apoptosis when overexpressed. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8MY12|MHCKC_DICDI Myosin heavy chain kinase C OS=Dictyostelium discoideum GN=mhkC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 27/289 (9%)
Query: 253 DCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE-DQPLCISG 311
+C+TG ++ L+S S D I VW + HV K H + AV+ DQ + +G
Sbjct: 515 ECITGDSLR---LYSGSNDGQIGVWDAVELKHVTNIKAHGKSIRAVIKRPGFDQNILTAG 571
Query: 312 DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371
+ + W + + +K+ NE ++ + LYTG D+T+K W +
Sbjct: 572 -ADSLVKEWDINTQQTIKEIKESNE--------VNTIFIQDNLLYTGCNDKTVKVWDMRS 622
Query: 372 GTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLS 431
T+SGH A+ ++ +L+SGS D I +W+L+ ++LT + G V +
Sbjct: 623 YECVKTLSGHTRAIKSVCAMGNLLFSGSNDQQIYVWNLATGTILTNFQ----GHEGWVKT 678
Query: 432 LTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQ 489
L A + L +I++W + + + +++ K V + + + +F G D +Q
Sbjct: 679 LYAHNNMLYSGSHDETIRIWDLKTTRCVNTIKC-KDRVETLHVTNQGIFAGSGD---WLQ 734
Query: 490 ELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYGK 538
+ D++E ++ S I L Q +LF G +KV+ + K
Sbjct: 735 VFSHDKYEN----LASLNTRSSILCLWRNQNQLFTGSLASNLKVWSWDK 779
|
Phosphorylates threonine at 'Thr-1823', 'Thr-1833' and 'Thr-2029' in the C-terminal tail region of myosin II heavy chain (mhcA) (By similarity). This phosphorylation is critical in actin-activated ATPase activity of the myosin and regulating the assembly and disassembly of myosin II filament. In vitro, catalytic domain phosphorylates mhcA, myelin basic protein, myosin regulatory light chain, casein and caldesmon. Drives the disassembly of myosin II filaments for efficient cytokinesis and recycling of myosin II that occurs during late cytokinesis. Can be activated in vitro by autophosphorylation. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|O14170|POP2_SCHPO WD repeat-containing protein pop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pop2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 115/293 (39%), Gaps = 75/293 (25%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVM----------- 296
L+GH++ V + + L S S DK++ VW+++ H F+GH +
Sbjct: 387 LEGHKEGVWAVKIHENTLVSGSIDKTVRVWNIEKAKCTHIFRGHISIIRCLEILVPSRLI 446
Query: 297 --AVVYVDEDQPLCISGDSGGGIFVWSFS-------FPLGHEPLKKWNEEKDWRY----- 342
V V+ DQP +SG + VW P + +W + + +
Sbjct: 447 RHGVEIVEPDQPYIVSGSRDHTLRVWKLPKNTDPPYLPDNTNSIDRWEKNPYFVHTLIGH 506
Query: 343 -------SGIHALTTSGRY--------------LY----------------------TGS 359
SG + SG Y LY +GS
Sbjct: 507 TDSVRTISGYGDILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISGS 566
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLE 419
D++I+ W L GT + GH + V+ L V L SGS D TIR+W L+ L VL
Sbjct: 567 MDKSIRVWDLSTGTCKYVLEGHDAFVTLLNVFQNRLISGSADSTIRIWDLNTGKPLMVLP 626
Query: 420 EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAV 470
+ SG +SS +S ++S GS+K+W R K ++ + T ++ V
Sbjct: 627 SN-SGYISSFVS----DEHKIISGNDGSVKLWDVRTGKLLRFLLTDLTKIWHV 674
|
Involved in maintenance of ploidy through proteasome dependent degradation of CDK inhibitor rum1 and S-phase initiator cdc18. Functions as a recognition factor for rum1 and cdc18, which are subsequently ubiquitinated and targeted to the 26S proteasome for degradation. Together with pop1, required for cig2 instability during G2 and M phase and cig2 degradation in exponentially growing cells. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 45/304 (14%)
Query: 190 LVLGELSCLPKERLETEDKDELLGAEN--------SDGADIDQARAAGGVKDLVNGLSKG 241
L L ++ L + E ++++ L G ++ DG I A+G + + S+
Sbjct: 1047 LKLATVTTLQQALFEMQERNRLEGHKDGVISISISRDGQTI----ASGSLDKTIKLWSRD 1102
Query: 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299
F+ L GH D V ++ G + S DK+I +W D + + T GH+ V V
Sbjct: 1103 GRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVY 1162
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFP------LGHEPLKKWNEEKDWRYSGIHAL--TTS 351
+ + + L S S I +W + GH +G+ + +
Sbjct: 1163 FSPDGKNLA-SASSDHSIKLWDTTSGQLLMTLTGHS-------------AGVITVRFSPD 1208
Query: 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSL 409
G+ + GS D+T+K W DG L T++GH+ V++L+ L S S D TI+LW +
Sbjct: 1209 GQTIAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRI 1268
Query: 410 SDHSLLTVLEEDSSGAVSSV--LSLTAVQHTLVVSHESGSIKVW-RNDKFMKSMQTHKGS 466
+D L+ L+ G SV ++ ++ + + +IK+W R+ +++ H G
Sbjct: 1269 ADGKLVKTLK----GHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGG 1324
Query: 467 VFAV 470
V+AV
Sbjct: 1325 VYAV 1328
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P42527|MHCKA_DICDI Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 25/211 (11%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYVDEDQ 305
+ GHR + +A ++F+SS D +I V ++ + + T GH +V VV ++
Sbjct: 908 VNGHRKSIESIACNSNYIFTSSPDNTIKVHIIRSGNTKCIETLVGHTGEVNCVVA---NE 964
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA-----LTTSGRYLYTGSG 360
S I VW S + E K + G+H L SGRYL++G
Sbjct: 965 KYLFSCSYDKTIKVWDLS---------TFKEIKS--FEGVHTKYIKTLALSGRYLFSGGN 1013
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420
D+ I W ++ M GH+ V +L L+S S+D I++W LS+ S + L+
Sbjct: 1014 DQIIYVWDTETLSMLFNMQGHEDWVLSLHCTASYLFSTSKDNVIKIWDLSNFSCIDTLK- 1072
Query: 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
G +SV S L E SIKVW
Sbjct: 1073 ---GHWNSVSSCVVKDRYLYSGSEDNSIKVW 1100
|
Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Requires autophosphorylation for activity. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 538 | ||||||
| 359492369 | 1817 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.286 | 0.601 | 1e-180 | |
| 302141770 | 734 | unnamed protein product [Vitis vinifera] | 0.901 | 0.660 | 0.564 | 1e-165 | |
| 356518567 | 1815 | PREDICTED: uncharacterized protein LOC10 | 0.910 | 0.269 | 0.540 | 1e-153 | |
| 255558580 | 1794 | F-box and wd40 domain protein, putative | 0.843 | 0.253 | 0.545 | 1e-150 | |
| 186478734 | 811 | zinc ion binding protein [Arabidopsis th | 0.983 | 0.652 | 0.494 | 1e-142 | |
| 334182750 | 1805 | preprotein translocase secA-like protein | 0.970 | 0.289 | 0.495 | 1e-140 | |
| 5263316 | 860 | Contains PF|00097 Zinc finger C3HC4 type | 0.973 | 0.609 | 0.493 | 1e-139 | |
| 449459378 | 761 | PREDICTED: uncharacterized protein LOC10 | 0.799 | 0.565 | 0.479 | 1e-109 | |
| 449500824 | 741 | PREDICTED: uncharacterized LOC101212974, | 0.797 | 0.578 | 0.477 | 1e-108 | |
| 242056063 | 823 | hypothetical protein SORBIDRAFT_03g00277 | 0.886 | 0.579 | 0.436 | 1e-107 |
| >gi|359492369|ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 320/532 (60%), Positives = 392/532 (73%), Gaps = 12/532 (2%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+LV GR++ +S+ + RI DKE+G+ ++ ++ F SPEV EL +KEGI +EC+
Sbjct: 297 MLVTGRKIHRSLVESVSGRRRIDDKEMGIISTNLIKREAFLSPEVFIELLQKEGIELECD 356
Query: 62 ESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK 121
+SVGY SDVW +AC+LL L IG FT EL +IR S K D L +YM E+
Sbjct: 357 SLSYSVGYSSDVWSLACMLLRLFIGNPFT-EL--HIR--SAKRHSD---YLEVYMDCREE 408
Query: 122 VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGPV 181
V+ LLE K G+ FV+LQ + C+CLN DP RPL+ +VWKCIREL+IKP+FD M+ G V
Sbjct: 409 VSSLLETKLGTNFVALQKILCECLNLDPKSRPLVADVWKCIRELVIKPQFDIMVSQEGTV 468
Query: 182 NLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLSKG 241
N N HCLVLGEL LPKE T + + + S ++DQA KD + GLS
Sbjct: 469 NEGNNVHCLVLGELCQLPKE---TNKGSKAVKTDESGRENVDQAGELQDDKDFIEGLSGS 525
Query: 242 NVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV 301
VK +LQGH DC+TGLAVGGGFLFSSSFDK+IHVWSL+DF+ VH F+GH+H+VMAVV+V
Sbjct: 526 TVKSINLQGHLDCITGLAVGGGFLFSSSFDKTIHVWSLQDFTLVHQFRGHEHRVMAVVFV 585
Query: 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSG 360
DE+QPLCISGD GGGIFVW S PLG EPLKKW E+KDWRYSGIHAL SG YLYTGSG
Sbjct: 586 DEEQPLCISGDIGGGIFVWGISIPLGQEPLKKWFEQKDWRYSGIHALAISGTGYLYTGSG 645
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420
D++IKAWSL D TLSCTM+GHKS VS LAV +GVLYSGS DGTIRLWSL+DHS LTVL E
Sbjct: 646 DKSIKAWSLQDCTLSCTMNGHKSVVSALAVSDGVLYSGSWDGTIRLWSLNDHSPLTVLGE 705
Query: 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTG 480
D+ G V SVLSL A H L+ +HE G +K+WRND FMKS+Q H G+VFAV + GKWLFTG
Sbjct: 706 DTPGNVISVLSLKADHHMLLAAHEDGCLKIWRNDVFMKSIQAHDGAVFAVAMGGKWLFTG 765
Query: 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVK 532
GWDK+V+VQE++GD+ + + +P G+I S +TALLYWQGKLFVGCADR +K
Sbjct: 766 GWDKSVNVQEISGDDLQIEALPVGSIASDSAVTALLYWQGKLFVGCADRIIK 817
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141770|emb|CBI18973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 309/547 (56%), Positives = 370/547 (67%), Gaps = 62/547 (11%)
Query: 38 SNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYI 97
S F SPEV EL +KEGI +EC+ +SVGY SDVW +AC+LL L IG FT+ +I
Sbjct: 199 SEAFLSPEVFIELLQKEGIELECDSLSYSVGYSSDVWSLACMLLRLFIGNPFTEL---HI 255
Query: 98 RCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157
R S K D L +YM E+V+ LLE K G+ FV+LQ + C+CLN DP RPL+ +
Sbjct: 256 R--SAKRHSDY---LEVYMDCREEVSSLLETKLGTNFVALQKILCECLNLDPKSRPLVAD 310
Query: 158 VWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKERLETEDKDELLGAENS 217
VWKCIREL+IKP+FD M+ G VN N HCLVLGEL LPKE T + + + S
Sbjct: 311 VWKCIRELVIKPQFDIMVSQEGTVNEGNNVHCLVLGELCQLPKE---TNKGSKAVKTDES 367
Query: 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVG---------------- 261
++DQA KD + GLS VK +LQGH DC+TGLAVG
Sbjct: 368 GRENVDQAGELQDDKDFIEGLSGSTVKSINLQGHLDCITGLAVGEDAEIQELNFFLFQLS 427
Query: 262 ----------------------------------GGFLFSSSFDKSIHVWSLKDFSHVHT 287
GGFLFSSSFDK+IHVWSL+DF+ VH
Sbjct: 428 VCLVMVYRDFFVILVHDHLAIHSKPASLSFLSFIGGFLFSSSFDKTIHVWSLQDFTLVHQ 487
Query: 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA 347
F+GH+H+VMAVV+VDE+QPLCISGD GGGIFVW S PLG EPLKKW E+KDWRYSGIHA
Sbjct: 488 FRGHEHRVMAVVFVDEEQPLCISGDIGGGIFVWGISIPLGQEPLKKWFEQKDWRYSGIHA 547
Query: 348 LTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRL 406
L SG YLYTGSGD++IKAWSL D TLSCTM+GHKS VS LAV +GVLYSGS DGTIRL
Sbjct: 548 LAISGTGYLYTGSGDKSIKAWSLQDCTLSCTMNGHKSVVSALAVSDGVLYSGSWDGTIRL 607
Query: 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGS 466
WSL+DHS LTVL ED+ G V SVLSL A H L+ +HE G +K+WRND FMKS+Q H G+
Sbjct: 608 WSLNDHSPLTVLGEDTPGNVISVLSLKADHHMLLAAHEDGCLKIWRNDVFMKSIQAHDGA 667
Query: 467 VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGC 526
VFAV + GKWLFTGGWDK+V+VQE++GD+ + + +P G+I S +TALLYWQGKLFVGC
Sbjct: 668 VFAVAMGGKWLFTGGWDKSVNVQEISGDDLQIEALPVGSIASDSAVTALLYWQGKLFVGC 727
Query: 527 ADRTVKV 533
ADR +KV
Sbjct: 728 ADRIIKV 734
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518567|ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793437 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/498 (54%), Positives = 356/498 (71%), Gaps = 8/498 (1%)
Query: 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGEQFTKELID 95
LE+ VF SPEVLYEL K G + S + +GYGSDVW +AC+LL LLIG ++
Sbjct: 329 LENEVFASPEVLYELLHKRGTAPDSGHSRYPIGYGSDVWSLACVLLRLLIGNVLAWNTLE 388
Query: 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155
K +D + Y W+EKV+ +LE+K GSE++SL+ + C+CL+ +PG RP +
Sbjct: 389 ------MKEENDGDSS-ASYACWVEKVSSVLEDKLGSEYLSLRQILCKCLDVNPGNRPDV 441
Query: 156 TNVWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKERLETEDKDELLGAE 215
+V KCI+ +++KP+FD + ++ + CLVLGEL LPK+ + EL E
Sbjct: 442 VDVRKCIQNMLVKPQFDFLGNLEVTISRDYTGICLVLGELCLLPKQSSNELIEHELWEKE 501
Query: 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIH 275
++ Q +D GL KG + KDLQGH DC++GLAVGG +L SSSFDK++H
Sbjct: 502 IGGQPNVVQDGKGKSDEDFAAGLPKGMTELKDLQGHLDCISGLAVGGRYLLSSSFDKTVH 561
Query: 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335
VWSL+DFSH+HTF+GH++KVMA+VYVDE++PLCISGDSGGGIF+W + PL +PL+KW
Sbjct: 562 VWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFIWGIAAPLRQDPLRKWY 621
Query: 336 EEKDWRYSGIHALTTSGRY-LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGV 394
E+KDWR+SGIH+L S + LYTGSGDRTIKAWSL D TL CTM+GH+S VSTLAVC+ V
Sbjct: 622 EKKDWRFSGIHSLVVSKNHSLYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEV 681
Query: 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454
LYSGS DGT+RLWSL+DHS LTVL ED + S+L++T +H LV +HE+G IKVWRND
Sbjct: 682 LYSGSWDGTVRLWSLNDHSPLTVLGEDPPAEMKSILAITVDRHLLVAAHENGCIKVWRND 741
Query: 455 KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514
FM S HKG++FA+ ++GK L+TGGWDK V++QEL+GDEFE DV G+IPC +V TA
Sbjct: 742 VFMNSKTLHKGAIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKAYGSIPCSAVATA 801
Query: 515 LLYWQGKLFVGCADRTVK 532
+L QGKL+VG AD+++K
Sbjct: 802 ILCSQGKLYVGYADKSIK 819
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558580|ref|XP_002520315.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223540534|gb|EEF42101.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 276/506 (54%), Positives = 343/506 (67%), Gaps = 52/506 (10%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+L+ R+V +SV RI D E+G+ +++ + VF SPE+L+E+FKKE I V+C
Sbjct: 282 VLLTSRKVHESVMAARSGSRRIGDIEMGILVTELFKREVFVSPEMLFEIFKKESIEVKCG 341
Query: 62 ES-EFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWME 120
S +S Y SD+W +AC + LLIG+QF +EL+DY+ +K
Sbjct: 342 SSFSYSAVYSSDIWSLACTFVRLLIGKQFVEELVDYVDYSVSKQ---------------- 385
Query: 121 KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGP 180
+ C+CLNF PG RP L +VWKCIRELIIKPEFD M+R
Sbjct: 386 -------------------ILCRCLNFYPGSRPPLIDVWKCIRELIIKPEFDTMLRLNKA 426
Query: 181 VNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLSK 240
+ + + H LVL EL+ + + E KDE+ G N+ +++Q KDLV GL +
Sbjct: 427 TDEKIKRHFLVLSELARVHIKASEMHVKDEVEGPVNNSEENVEQFEGRMVDKDLVKGLVQ 486
Query: 241 GNVKFKDLQGHRDCVTGLAVGG---------------GFLFSSSFDKSIHVWSLKDFSHV 285
GNVK KDLQGH DCVTGLA+GG GFLFSSSFDKS+ VWSL+D S +
Sbjct: 487 GNVKLKDLQGHLDCVTGLAIGGDEPQQDVPTYVYPAGGFLFSSSFDKSVRVWSLQDLSPL 546
Query: 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI 345
HTFKGH+HKVMAV+YVDE+QPLCISGD+GGGIF+WS + PL E LK W E+KDWRYSGI
Sbjct: 547 HTFKGHEHKVMAVIYVDEEQPLCISGDAGGGIFLWSINHPLRQESLKNWYEQKDWRYSGI 606
Query: 346 HALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTI 404
HALTT+G YLYTGSGDR++KAWSL DG LSCTM GHKS VS+LA +GVLYSGS DGTI
Sbjct: 607 HALTTAGNGYLYTGSGDRSVKAWSLRDGILSCTMDGHKSVVSSLAASDGVLYSGSWDGTI 666
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHK 464
RLWSL+DHSLLTVL ED G ++SVLSL+ Q+ LV +HE+G IKVWRNDKFMKS+Q H
Sbjct: 667 RLWSLTDHSLLTVLGEDMPGTMTSVLSLSVCQNILVAAHENGHIKVWRNDKFMKSIQLHN 726
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSVQE 490
G++FA +EGK+LFTGGWDKTV V E
Sbjct: 727 GAIFATGMEGKYLFTGGWDKTVYVLE 752
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478734|ref|NP_001117325.1| zinc ion binding protein [Arabidopsis thaliana] gi|17529236|gb|AAL38845.1| putative SecA-type chloroplast protein transport factor [Arabidopsis thaliana] gi|20465933|gb|AAM20152.1| putative SecA-type chloroplast transport factor protein [Arabidopsis thaliana] gi|110739333|dbj|BAF01579.1| hypothetical protein [Arabidopsis thaliana] gi|332192014|gb|AEE30135.1| zinc ion binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 267/540 (49%), Positives = 370/540 (68%), Gaps = 11/540 (2%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLS 239
+ + + CL EL L + + DK EL G + D A+ + D +S
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAEEGKVDI-----DFPGRVS 511
Query: 240 KGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299
+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA++
Sbjct: 512 EGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMALI 571
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTG 358
+++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YTG
Sbjct: 572 HIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYTG 631
Query: 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418
SGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTVL
Sbjct: 632 SGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVL 691
Query: 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLF 478
E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWLF
Sbjct: 692 GEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWLF 751
Query: 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYGK 538
TGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+KVYY+G+
Sbjct: 752 TGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIKVYYFGR 811
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182750|ref|NP_001185058.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192012|gb|AEE30133.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/535 (49%), Positives = 365/535 (68%), Gaps = 13/535 (2%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVK-DLVNGL 238
+ + + CL EL L + + DK EL G + D A+ G V D +
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAE------EGKVDIDFPGRV 510
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA+
Sbjct: 511 SEGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMAL 570
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYT 357
++++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YT
Sbjct: 571 IHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYT 630
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
GSGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTV
Sbjct: 631 GSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTV 690
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWL 477
L E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWL
Sbjct: 691 LGEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWL 750
Query: 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVK 532
FTGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+K
Sbjct: 751 FTGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIK 805
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5263316|gb|AAD41418.1|AC007727_7 Contains PF|00097 Zinc finger C3HC4 type and 4 WD40 PF|00400 (G beta) domains [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/535 (49%), Positives = 365/535 (68%), Gaps = 11/535 (2%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLS 239
+ + + CL EL L + + DK EL G + D A+ + D +S
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAEEGKVDI-----DFPGRVS 511
Query: 240 KGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299
+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA++
Sbjct: 512 EGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMALI 571
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTG 358
+++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YTG
Sbjct: 572 HIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYTG 631
Query: 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418
SGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTVL
Sbjct: 632 SGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVL 691
Query: 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLF 478
E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWLF
Sbjct: 692 GEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWLF 751
Query: 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKV 533
TGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+KV
Sbjct: 752 TGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIKV 806
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459378|ref|XP_004147423.1| PREDICTED: uncharacterized protein LOC101212974 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/453 (47%), Positives = 293/453 (64%), Gaps = 23/453 (5%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+LVMGR V ++V + GS++ KE+G+ S+ ++ F PEVL +L KE + +EC
Sbjct: 309 VLVMGRTVCETVIEAVSSGSKLHMKELGMLTSNLIKKEAFVPPEVLLKLLNKEDVGLECS 368
Query: 62 ESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK 121
+ SVG D+W + +LLSLL+G+ +E + + + + C Y +W+EK
Sbjct: 369 TTLCSVGNKCDIWSLVLVLLSLLLGKDCFEETLGSVE-------ESHSDCSAFYGSWVEK 421
Query: 122 VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGPV 181
V+ L+ KFG + SL+ C+ L+FDP RP + + +C RELI+ E D + V
Sbjct: 422 VSSCLDTKFGLGYASLKQTLCRSLDFDPENRPHVVELLRCCRELIVSSELDALASLKLGV 481
Query: 182 N---LENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGL 238
N E+ +HCLVLG+L LP + +ET D +DQ K V+G+
Sbjct: 482 NESGSESGDHCLVLGDLIRLPDKLIETHRDD------------MDQITEEKTTKKFVDGI 529
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S G VK +D+ GHRD VTGL +GG +LFSSS+DK++ WSL+DFSHVHTF GH+H++M +
Sbjct: 530 SVGMVKSRDMLGHRDSVTGLVIGGDYLFSSSYDKTVQAWSLQDFSHVHTFIGHEHRIMDL 589
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT-TSGRYLYT 357
VY+DE+QPLC+S D GGGI+VWS + PL +PLKKW EEKDWRY GIHAL +S YLYT
Sbjct: 590 VYIDEEQPLCVSADIGGGIYVWSVALPLKQDPLKKWYEEKDWRYDGIHALAYSSNGYLYT 649
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
G GD+ +K WSL DGTLS +M GHKS VS L NGVLYSGS DG IRLWSL++ S L V
Sbjct: 650 GGGDKLVKEWSLKDGTLSGSMHGHKSVVSALVASNGVLYSGSWDGAIRLWSLANRSQLAV 709
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
L E+SSG++ SVL L A + LV +HE+GSIKV
Sbjct: 710 LGEESSGSLGSVLRLAAKMNILVATHENGSIKV 742
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500824|ref|XP_004161204.1| PREDICTED: uncharacterized LOC101212974, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/452 (47%), Positives = 292/452 (64%), Gaps = 23/452 (5%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+LVMGR V ++V + GS++ KE+G+ S+ ++ F PEVL +L KE + +EC
Sbjct: 309 VLVMGRTVCETVIEAVSSGSKLHMKELGMLTSNLIKKEAFVPPEVLLKLLNKEDVGLECS 368
Query: 62 ESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK 121
+ SVG D+W + +LLSLL+G+ +E + + + + C Y +W+EK
Sbjct: 369 TTLCSVGNKCDIWSLVLVLLSLLLGKDCFEETLGSVE-------ESHSDCSAFYGSWVEK 421
Query: 122 VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGPV 181
V+ L+ KFG + SL+ C+ L+FDP RP + + +C RELI+ E D + V
Sbjct: 422 VSSCLDTKFGLGYASLKQTLCRSLDFDPENRPHVVELLRCCRELIVSSELDALASLKLGV 481
Query: 182 N---LENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGL 238
N E+ +HCLVLG+L LP + +ET D +DQ K V+G+
Sbjct: 482 NESGSESGDHCLVLGDLIRLPDKLIETHRDD------------MDQITEEKTTKKFVDGI 529
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S G VK +D+ GHRD VTGL +GG +LFSSS+DK++ WSL+DFSHVHTF GH+H++M +
Sbjct: 530 SVGMVKSRDMLGHRDSVTGLVIGGDYLFSSSYDKTVQAWSLQDFSHVHTFIGHEHRIMDL 589
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT-TSGRYLYT 357
VY+DE+QPLC+S D GGGI+VWS + PL +PLKKW EEKDWRY GIHAL +S YLYT
Sbjct: 590 VYIDEEQPLCVSADIGGGIYVWSVALPLKQDPLKKWYEEKDWRYDGIHALAYSSNGYLYT 649
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
G GD+ +K WSL DGTLS +M GHKS VS L NGVLYSGS DG IRLWSL++ S L V
Sbjct: 650 GGGDKLVKEWSLKDGTLSGSMHGHKSVVSALVASNGVLYSGSWDGAIRLWSLANRSQLAV 709
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIK 449
L E+SSG++ SVL L A + LV +HE+GSIK
Sbjct: 710 LGEESSGSLGSVLRLAAKMNILVATHENGSIK 741
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242056063|ref|XP_002457177.1| hypothetical protein SORBIDRAFT_03g002770 [Sorghum bicolor] gi|241929152|gb|EES02297.1| hypothetical protein SORBIDRAFT_03g002770 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/511 (43%), Positives = 309/511 (60%), Gaps = 34/511 (6%)
Query: 39 NVFFSPEVLYELFKKEGIWVECEESEFS--VGYGSDVWPVACILLSLLIGEQFTKELIDY 96
F +PEV L + ++ +F VG SD+W + C+ ++LL ++
Sbjct: 330 RAFIAPEVRVVLDDISRV----KDRDFDGLVGCSSDIWSLGCVFVALLTRDE-------- 377
Query: 97 IRCVSTKASDDNIACLGMYMAW-MEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155
+ V+ S+ G+Y W E VT L + G+ L + CL +DP CRP +
Sbjct: 378 -QLVAGWNSE------GLYDDWEKEVVTRLDASLLGTILEPLAAVIASCLRYDPKCRPEI 430
Query: 156 TNVWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKER--LETEDKDELLG 213
+VWKCIR L+ K + D + V + CL+LGELS + + +E++DK +L
Sbjct: 431 ADVWKCIRGLLTKSD-DVTLAPGDDVAAQKSFRCLLLGELSSMFTDSGAVESDDKTQLSR 489
Query: 214 AENSDGADIDQARAAGGVKDLVNGLS-------KGNVKFKDLQGHRDCVTGLAVGGGFLF 266
+ + + D G + + N LS G K L HRDCVTGL VGGGFLF
Sbjct: 490 GADDNRLNQDHGSHDGFLNNRGNDLSGIDSPQSAGVFKSSTLLAHRDCVTGLDVGGGFLF 549
Query: 267 SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFP 325
SSS+DK+I+VWSL+DFSHV KGH+HK+ A+V D D LCISGDSG GIFVW
Sbjct: 550 SSSYDKTINVWSLQDFSHVQCLKGHEHKITAIVAADNDSHSLCISGDSGSGIFVWHVDST 609
Query: 326 LGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA 384
L EPL KW E DW Y G++ L SG YLYTGS D++IKAWSL D +L CTM+GHKS
Sbjct: 610 LKEEPLNKWYEHDDWLYRGVNCLAVSGTGYLYTGSRDKSIKAWSLEDYSLRCTMTGHKST 669
Query: 385 VSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE 444
VS L V +G+LYSGS DGTIRLW L+DH+ L+VLE+D++G ++ VLS++A + + S+E
Sbjct: 670 VSCLVVASGILYSGSWDGTIRLWWLTDHTPLSVLEDDTAGTIAPVLSISAEANFVASSYE 729
Query: 445 SGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG 504
+G K+W+ND +KS + G+V+AV L KWL+TGGWDK +++QEL DE E ++
Sbjct: 730 NGYFKIWKNDMLVKSEKLQNGAVYAVKLSDKWLYTGGWDKVINIQELLDDESEVELRDVA 789
Query: 505 AIPCGSVITALLYWQGKLFVGCADRTVKVYY 535
+I C S+IT++L W +L VG + R +KVYY
Sbjct: 790 SITCDSIITSILPWDERLIVGLSSRDIKVYY 820
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 538 | ||||||
| TAIR|locus:4515102561 | 811 | AT1G21651 [Arabidopsis thalian | 0.981 | 0.651 | 0.497 | 7e-141 | |
| DICTYBASE|DDB_G0289115 | 732 | mhkB "myosin heavy chain kinas | 0.420 | 0.308 | 0.304 | 1.6e-18 | |
| TAIR|locus:2085929 | 473 | AT3G18950 "AT3G18950" [Arabido | 0.304 | 0.346 | 0.252 | 1.8e-15 | |
| UNIPROTKB|I3LMJ3 | 512 | LOC100738291 "Uncharacterized | 0.427 | 0.449 | 0.298 | 2e-15 | |
| UNIPROTKB|F1P0J6 | 660 | TRAF7 "Uncharacterized protein | 0.427 | 0.348 | 0.294 | 3.4e-15 | |
| UNIPROTKB|F1NEH1 | 670 | TRAF7 "Uncharacterized protein | 0.427 | 0.343 | 0.294 | 3.5e-15 | |
| UNIPROTKB|F1RFA9 | 670 | TRAF7 "Uncharacterized protein | 0.427 | 0.343 | 0.298 | 3.5e-15 | |
| POMBASE|SPAC57A10.05c | 605 | pof1 "F-box/WD repeat protein | 0.464 | 0.413 | 0.265 | 3.7e-15 | |
| WB|WBGene00004767 | 587 | sel-10 [Caenorhabditis elegans | 0.542 | 0.497 | 0.246 | 4.5e-15 | |
| UNIPROTKB|Q93794 | 587 | sel-10 "F-box/WD repeat-contai | 0.542 | 0.497 | 0.246 | 4.5e-15 |
| TAIR|locus:4515102561 AT1G21651 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
Identities = 269/541 (49%), Positives = 371/541 (68%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVK-DLVNGL 238
+ + + CL EL L + + DK EL G + D A+ G V D +
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAE------EGKVDIDFPGRV 510
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA+
Sbjct: 511 SEGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMAL 570
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYT 357
++++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YT
Sbjct: 571 IHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYT 630
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
GSGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTV
Sbjct: 631 GSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTV 690
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWL 477
L E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWL
Sbjct: 691 LGEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWL 750
Query: 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537
FTGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+KVYY+G
Sbjct: 751 FTGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIKVYYFG 810
Query: 538 K 538
+
Sbjct: 811 R 811
|
|
| DICTYBASE|DDB_G0289115 mhkB "myosin heavy chain kinase B" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 75/246 (30%), Positives = 114/246 (46%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH V + +LFS S D SI VW LK + T +GHD V V+ D+
Sbjct: 498 LKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDK---Y 554
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
SG S I VW + L+ K+ E R + L SG+YL++GS D+TIK
Sbjct: 555 LFSGSSDKTIKVWDL------KTLECKYTLESHAR--AVKTLCISGQYLFSGSNDKTIKV 606
Query: 367 WSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426
W L + T+ GH V+T+ + LYSGS D TIR+W+L L G
Sbjct: 607 WDLKTFRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLR----GHD 662
Query: 427 SSVLSLTAVQHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSV--FAVFLEGKWLFTGGW 482
V + L + + +IK+W + +++ H +V AV+ + K + +
Sbjct: 663 RWVEHMVICDKLLFTASDDNTIKIWDLETLRCNTTLEGHNATVQCLAVWEDKKCVISCSH 722
Query: 483 DKTVSV 488
D+++ V
Sbjct: 723 DQSIRV 728
|
|
| TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 45/178 (25%), Positives = 87/178 (48%)
Query: 329 EPLKKWNEEKDWRYSGIHALTTSGRY--LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386
E ++ N K Y + L+ + LY+GS D+T+K W L D ++ H A++
Sbjct: 236 EVRRRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAIN 295
Query: 387 TLAV-CNGVLYSGSRDGTIRLWSL------SDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439
T+A + +L++GS DGT+++W + H L+ VL + + + +++TA +
Sbjct: 296 TVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNITAA--VV 353
Query: 440 VVSHESGSIKVWRNDKFMK---SMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGD 494
G++ W K++ +++ H+ +V + G + +GG DK + V GD
Sbjct: 354 YCGSSDGTVNFWEGQKYLSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGD 411
|
|
| UNIPROTKB|I3LMJ3 LOC100738291 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 74/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 275 KTLEGHDGIVLALCIQGCRLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 331
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 332 NLLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 384
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L
Sbjct: 385 IWDIR--TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLT-GHV 441
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 442 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 501
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 502 AVDSTVKV 509
|
|
| UNIPROTKB|F1P0J6 TRAF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 73/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 423 KTLEGHDGIVLALCIQGNKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 479
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL S YLY+GS +TIK
Sbjct: 480 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVASQNYLYSGSY-QTIK 532
Query: 366 AWSLLDGTLSCT--MSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + + L C + +V ++AV N + G+ + I +W + + L
Sbjct: 533 IWDIRN--LECVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIETKEQVRTLT-GHV 589
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 590 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 649
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 650 AVDSTVKV 657
|
|
| UNIPROTKB|F1NEH1 TRAF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 73/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 433 KTLEGHDGIVLALCIQGNKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 489
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL S YLY+GS +TIK
Sbjct: 490 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVASQNYLYSGSY-QTIK 542
Query: 366 AWSLLDGTLSCT--MSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + + L C + +V ++AV N + G+ + I +W + + L
Sbjct: 543 IWDIRN--LECVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIETKEQVRTLT-GHV 599
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 600 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 659
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 660 AVDSTVKV 667
|
|
| UNIPROTKB|F1RFA9 TRAF7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 74/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 433 KTLEGHDGIVLALCIQGCRLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 489
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 490 NLLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 542
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L
Sbjct: 543 IWDIR--TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLT-GHV 599
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 600 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 659
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 660 AVDSTVKV 667
|
|
| POMBASE|SPAC57A10.05c pof1 "F-box/WD repeat protein protein Pof1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 70/264 (26%), Positives = 115/264 (43%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH VT L L S S DK+I +W+ + + GH V+ + + D L
Sbjct: 309 LEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTF---DSTL 365
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367
+SG + + +W FS G + + + + + G L +GS D TIK W
Sbjct: 366 LVSGSADCTVKLWHFS---GGKRITLRGHTGP--VNSVRIIRDRGLVL-SGSDDSTIKIW 419
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS 427
SL T T S H V +LA+ + L+S S DGTI+ W + + L G +
Sbjct: 420 SLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKKCVHTL----FGHIE 475
Query: 428 SVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVS 487
V + A L+ G +KVW + + +++ H V +V L + +G D +
Sbjct: 476 GVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNHSEPVTSVALGDCEVVSGSEDGKIY 535
Query: 488 VQELAGDEFEEDVIPTGAIPCGSV 511
+ L + E + T ++P S+
Sbjct: 536 LW-LFNNAPNESPVSTQSVPISSL 558
|
|
| WB|WBGene00004767 sel-10 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 81/329 (24%), Positives = 146/329 (44%)
Query: 219 GADIDQARAAG-GVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVW 277
GA A AAG + D + +F LQ D A +L + +K+ W
Sbjct: 184 GAWQGTAIAAGVTIPDHIQPCDLNVHRFLKLQKFGDIFERAADKSRYLRADKIEKN---W 240
Query: 278 SLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-----FPL-GHEPL 331
+ +GH+ V+ + + +D + ++G + VW + L GH
Sbjct: 241 NANPIMGSAVLRGHEDHVITCMQIHDD--VLVTGSDDNTLKVWCIDKGEVMYTLVGHTG- 297
Query: 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391
W + ++ GRY+ +GS DRT+K WS +DG+L T+ GH S V +A+
Sbjct: 298 GVWTSQ----------ISQCGRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMA 347
Query: 392 NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
+L +GSRD T+R+W + L L G ++V + T+V ++K+W
Sbjct: 348 GSILVTGSRDTTLRVWDVESGRHLATLH----GHHAAVRCVQFDGTTVVSGGYDFTVKIW 403
Query: 452 R--NDKFMKSMQTHKGSVFAVFLEGKW--LFTGGWDKTVSVQELAGDEFEEDVIPTGAIP 507
+ ++++ H V+++ E + + +G D ++ V + E +E V A+
Sbjct: 404 NAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECV----ALL 459
Query: 508 CGSV-ITALLYWQGKLFVGC-ADRTVKVY 534
G +T+ + +G + V C AD V+V+
Sbjct: 460 QGHTSLTSGMQLRGNILVSCNADSHVRVW 488
|
|
| UNIPROTKB|Q93794 sel-10 "F-box/WD repeat-containing protein sel-10" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 81/329 (24%), Positives = 146/329 (44%)
Query: 219 GADIDQARAAG-GVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVW 277
GA A AAG + D + +F LQ D A +L + +K+ W
Sbjct: 184 GAWQGTAIAAGVTIPDHIQPCDLNVHRFLKLQKFGDIFERAADKSRYLRADKIEKN---W 240
Query: 278 SLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-----FPL-GHEPL 331
+ +GH+ V+ + + +D + ++G + VW + L GH
Sbjct: 241 NANPIMGSAVLRGHEDHVITCMQIHDD--VLVTGSDDNTLKVWCIDKGEVMYTLVGHTG- 297
Query: 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391
W + ++ GRY+ +GS DRT+K WS +DG+L T+ GH S V +A+
Sbjct: 298 GVWTSQ----------ISQCGRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMA 347
Query: 392 NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
+L +GSRD T+R+W + L L G ++V + T+V ++K+W
Sbjct: 348 GSILVTGSRDTTLRVWDVESGRHLATLH----GHHAAVRCVQFDGTTVVSGGYDFTVKIW 403
Query: 452 R--NDKFMKSMQTHKGSVFAVFLEGKW--LFTGGWDKTVSVQELAGDEFEEDVIPTGAIP 507
+ ++++ H V+++ E + + +G D ++ V + E +E V A+
Sbjct: 404 NAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECV----ALL 459
Query: 508 CGSV-ITALLYWQGKLFVGC-ADRTVKVY 534
G +T+ + +G + V C AD V+V+
Sbjct: 460 QGHTSLTSGMQLRGNILVSCNADSHVRVW 488
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 538 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-09 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 16/249 (6%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L+GH VT +A G L + S D +I VW L+ + T KGH V V +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L S I +W E ++ + S A + GR L + S D+TIK
Sbjct: 65 YLASGS-SDKTIRLWDLETG---ECVRTLTGHTSYVSSV--AFSPDGRILSSSSRDKTIK 118
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAV--CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ GH V+++A + S S+DGTI+LW L + L +
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHT 177
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAV--FLEGKWLFT 479
G V+SV + + L+ S G+IK+W K + +++ H+ V +V +G L +
Sbjct: 178 GEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 480 GGWDKTVSV 488
G D T+ V
Sbjct: 237 GSEDGTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 71/266 (26%), Positives = 111/266 (41%), Gaps = 35/266 (13%)
Query: 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL------GHEPLKKWNEE 337
T KGH V V + D L +G G I VW GH
Sbjct: 1 LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHT-------- 51
Query: 338 KDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV--CNG 393
+ + S G YL +GS D+TI+ W L G T++GH S VS++A
Sbjct: 52 -----GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106
Query: 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW-- 451
+L S SRD TI++W + LT L + V+SV + + + S + G+IK+W
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSV-AFSPDGTFVASSSQDGTIKLWDL 164
Query: 452 RNDKFMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCG 509
R K + ++ H G V +V +G+ L + D T+ + +L+ + T
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGHEN 220
Query: 510 SVITALLYWQGKLFVGCA-DRTVKVY 534
V + G L + D T++V+
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 26/173 (15%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L+GH D V +A G F+ SSS D +I +W L+ V T GH +V +V + + +
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190
Query: 306 PLCISGDSGGGIFVWSFSFP------LGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYT 357
L S G I +W S GHE +G++++ S G L +
Sbjct: 191 KLLSSSSD-GTIKLWDLSTGKCLGTLRGHE-------------NGVNSVAFSPDGYLLAS 236
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWS 408
GS D TI+ W L G T+SGH ++V++LA L SGS DGTIR+W
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.2 bits (243), Expect = 8e-22
Identities = 80/307 (26%), Positives = 124/307 (40%), Gaps = 18/307 (5%)
Query: 238 LSKGNVKFKDLQGHRDCVTGLAV---GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK 294
LS + L+GH + VT LA G SS D +I +W L+ + T GH
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRY 354
V ++ + + L SG S G I +W S G + D + + + G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST--GKLLRSTLSGHSDS---VVSSFSPDGSL 255
Query: 355 LYTGSGDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAV--CNGVLYSGSRDGTIRLWSLSD 411
L +GS D TI+ W L +L T+SGH S+V ++A +L SGS DGT+RLW L
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315
Query: 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKFMKSMQTHKGSV--- 467
LL+ L S LS + LV + G+I++W S
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375
Query: 468 FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCA 527
+ +G+ + +G D TV + +L + L G +
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDL---STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
Query: 528 DRTVKVY 534
D T++++
Sbjct: 433 DNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.8 bits (221), Expect = 5e-19
Identities = 75/254 (29%), Positives = 109/254 (42%), Gaps = 17/254 (6%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSH-VHTFKG-HDHKVMAVVYVDE 303
L+GH D +T +A G L S S D +I +W L + + + +G HD V +
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DR 362
D + S V + + ++ + S A + G+ L +GS D
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL--AFSPDGKLLASGSSLDG 178
Query: 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLE 419
TIK W L G T++GH VS+LA ++ SGS DGTIRLW LS LL
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 420 EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQT---HKGSVFAVFL--EG 474
S +V S S L G+I++W ++T H SV +V +G
Sbjct: 239 SGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296
Query: 475 KWLFTGGWDKTVSV 488
K L +G D TV +
Sbjct: 297 KLLASGSSDGTVRL 310
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.5 bits (184), Expect = 2e-14
Identities = 68/228 (29%), Positives = 97/228 (42%), Gaps = 10/228 (4%)
Query: 238 LSKGNVKFKDLQGHRD-CVTGLAVGGGFLFSSSFDKSIHVWSLK-DFSHVHTFKGHDHKV 295
LS G + L GH D V+ + G L S S D +I +W L+ S + T GH V
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355
++V + D L SG S G + +W L E S + +
Sbjct: 288 LSVAF-SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLV 344
Query: 356 YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY--SGSRDGTIRLWSLSDHS 413
GS D TI+ W L G T+ GH S V +++ SGS DGT+RLW LS S
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQ 461
LL L+ +S S L + +L +I++W +KS+
Sbjct: 404 LLRNLDGHTSRVTS--LDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.5 bits (184), Expect = 2e-14
Identities = 54/203 (26%), Positives = 79/203 (38%), Gaps = 12/203 (5%)
Query: 238 LSKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL--KDFSHVHTFKGHDH 293
L + + L GH V +A G L S S D ++ +W L T KGH+
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
V ++ + + L G G I +W + L+ + +S GR
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP------DGR 383
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSD 411
+ +GS D T++ W L G+L + GH S V++L L SGS D TIRLW L
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Query: 412 HSLLTVLEEDSSGAVSSVLSLTA 434
D S L+
Sbjct: 444 SLKSVSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (142), Expect = 2e-09
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVCNG-----VLYSGS 399
A + G L +GS D TIK W L +G H S+VS LA+ + +L S S
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFM 457
DGT++LW LS L E S +V+S+ + S G+IK+W R K +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 458 KSMQTHKGSVFAV---FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514
++ H V ++ G + +G D T+ + +L+ + + SV+++
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSVVSS 248
Query: 515 LLYWQGKLFVGCADRTVKVY 534
L G +D T++++
Sbjct: 249 FSPDGSLLASGSSDGTIRLW 268
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 267 SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326
SS+F+ + VW + V K H+ +V ++ Y D L SG G + +WS + +
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609
Query: 327 GHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS-CTMSGHKSA 384
+K K N + + SGR L GS D + + L + L CTM GH
Sbjct: 610 SIGTIKTKAN------ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663
Query: 385 VSTLA-VCNGVLYSGSRDGTIRLWSLS 410
VS + V + L S S D T++LW LS
Sbjct: 664 VSYVRFVDSSTLVSSSTDNTLKLWDLS 690
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 1e-04
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 371 DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408
G L T+ GH V+++A L SGS DGTI+LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 1e-04
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 372 GTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408
G L T+ GH V+++A +L SGS DGT+R+W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
Query: 312 DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371
D+ G +W G A G LY +G + A
Sbjct: 9 DAATGKVLWRVDLGGT-------------ALGGGVA--VDGGRLYVATGKGELVALDAAT 53
Query: 372 GTL--SCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLL-TVLEEDSSGAVSS 428
G L +SG + V GV+ + DG++ LL + +
Sbjct: 54 GKLLWRKDLSG--EILGAPTVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRG 111
Query: 429 VLSLTAVQHTLVVSHESG 446
S V T++V SG
Sbjct: 112 SSSPAIVGDTVIVGFSSG 129
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 538 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.98 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.98 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.91 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.83 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.82 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.82 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.76 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.74 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.73 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.71 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.7 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.65 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.64 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.64 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.64 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.63 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.63 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.62 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.61 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.61 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.6 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.59 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.57 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.57 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.57 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.54 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.54 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.53 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.53 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.52 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.52 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.52 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.51 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.51 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.5 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.5 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.49 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.49 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.48 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.48 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.47 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.47 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.46 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.45 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.45 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.44 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.44 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.4 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.39 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.39 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.39 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.39 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.39 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.38 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.38 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.38 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.37 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.37 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.37 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.37 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.36 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.36 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.36 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.36 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.36 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.35 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.35 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.35 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.34 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.34 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.33 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.33 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.33 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.32 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.32 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.32 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.32 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.32 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.32 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.32 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.31 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.31 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.31 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.3 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.3 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.3 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.3 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.3 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.3 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.3 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.3 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.3 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.29 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.29 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.29 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.29 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.29 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.28 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.28 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.28 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.28 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.28 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.28 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.28 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.28 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.28 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.27 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.27 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.27 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.27 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.27 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.26 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.26 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.26 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.26 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.26 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.26 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.26 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.26 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.26 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.26 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.25 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.25 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.25 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.25 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.25 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.25 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.25 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.24 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.24 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.24 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 99.24 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.23 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.23 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.23 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.23 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.23 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.23 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.23 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.23 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.23 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.23 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.23 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.23 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.23 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.22 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.22 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.22 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.22 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.22 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.21 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.2 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.2 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.2 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.2 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.2 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.2 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.2 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.2 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.19 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.19 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.19 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.19 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.19 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.19 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.19 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.19 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.19 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.19 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.18 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.18 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.18 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.18 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.18 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.18 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.18 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.17 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.17 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.17 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.17 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.17 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.17 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.17 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.17 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.17 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.17 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.17 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.16 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.16 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.16 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.16 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.16 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.15 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.15 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.15 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.15 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.15 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.15 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.15 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.15 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.15 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.14 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.14 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.14 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.14 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.14 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.14 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.14 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.14 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.14 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.13 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.13 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.13 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.13 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.13 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.13 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.13 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.13 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.13 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.13 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.13 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.12 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.12 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.12 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.12 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.12 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.12 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.12 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.12 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.12 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.12 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.12 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.12 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.12 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.11 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.11 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.11 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.11 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.11 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.11 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.11 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.11 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.1 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.1 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.1 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.1 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.1 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.1 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.1 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.1 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.1 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.09 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.09 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.09 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.09 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.09 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.09 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.09 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.09 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.09 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.09 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.09 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.09 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.09 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.08 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.08 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.08 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.08 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.08 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.08 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.08 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.08 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.08 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.08 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.07 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.07 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.07 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.07 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.07 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.07 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.07 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.07 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.06 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.06 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.06 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.06 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=314.73 Aligned_cols=311 Identities=24% Similarity=0.395 Sum_probs=261.9
Q ss_pred hcCCCCCCCccceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeC
Q 009274 211 LLGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL 279 (538)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~ 279 (538)
..+...-.+.++-++.+++.+..+++++.+..+++|++ ++|...|.|++|+ |+.||+|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34445556677999999999999999999999999984 6999999999999 999999999999999999
Q ss_pred CCCceE-EEEecCCcCeEEEEEec----CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-
Q 009274 280 KDFSHV-HTFKGHDHKVMAVVYVD----EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR- 353 (538)
Q Consensus 280 ~~~~~~-~~~~~h~~~v~~l~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 353 (538)
++|+++ ..+++|...|++++|.| ...+++++++.||.++|||+..+.....+. . +..++.|+.+.|.
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls---g----HT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS---G----HTASVTCVRWGGEG 259 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec---c----CccceEEEEEcCCc
Confidence 998775 67899999999999976 345588999999999999998654433332 2 3445778888865
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-------------CC-------------------------EE
Q 009274 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-------------NG-------------------------VL 395 (538)
Q Consensus 354 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-------------~~-------------------------~l 395 (538)
++++|+.|++|++|+...|.+..++++|...|+.++.+ ++ .+
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 99999999999999999999999999999999999876 22 39
Q ss_pred EEEecCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEe
Q 009274 396 YSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL 472 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~ 472 (538)
++|+.|.++.+|+....+ ++..+.+|. ..+.. +.|+||++++++++.|..|++|| .++.+.++.+|-+.|+.++|
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq-~lVn~-V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQ-ALVNH-VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchh-hheee-EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 999999999999986544 666666653 34444 69999999999999999999998 66789999999999999999
Q ss_pred --CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE-EEEEECCCeEEEEE
Q 009274 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK-LFVGCADRTVKVYY 535 (538)
Q Consensus 473 --~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~sg~~dg~v~vw~ 535 (538)
|.++|++||.|.++++||+++.++...+.. +...+.++.| +||. +++|+.|..+++|.
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-----h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-----HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCCC-----CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 888999999999999999999987655442 3445566555 4665 77799999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=355.02 Aligned_cols=279 Identities=18% Similarity=0.220 Sum_probs=211.5
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC----c----eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcE
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----S----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 317 (538)
+.+|.+.|++++|+ ++++++|+.|++|+|||..+. . ....+. +...+.+++|++..+.++++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 45699999999999 899999999999999997532 1 222333 456899999998778899999999999
Q ss_pred EEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CC
Q 009274 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NG 393 (538)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~ 393 (538)
++||+.++.. +..+..+.. ....+++++ ++.+|++|+.||+|++||++++..+..+..+ ..|.++.|. +.
T Consensus 558 ~lWd~~~~~~---~~~~~~H~~--~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 558 QVWDVARSQL---VTEMKEHEK--RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred EEEECCCCeE---EEEecCCCC--CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC
Confidence 9999986543 233333332 122345664 6789999999999999999999988888754 679999996 45
Q ss_pred EEEEEecCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--------cceeeecccc
Q 009274 394 VLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--------KFMKSMQTHK 464 (538)
Q Consensus 394 ~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------~~~~~~~~h~ 464 (538)
++++|+.|+.|++||+++.+ ....+..| ...+.. +.|. ++.++++++.|++|++||.. +++..+.+|.
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~-v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSY-VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEE-EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 99999999999999998876 35555544 344444 5675 67899999999999999965 3567888999
Q ss_pred ceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeee--cCC------cccCCCceEEEEEe-CC-EEEEEECCCeEE
Q 009274 465 GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVI--PTG------AIPCGSVITALLYW-QG-KLFVGCADRTVK 532 (538)
Q Consensus 465 ~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~-~~-~l~sg~~dg~v~ 532 (538)
..+.++.+ ++.+|++|+.|+.|++|+........... ... ...+...+..+.|. ++ .|++|+.||.|+
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 88877765 88999999999999999987553221111 100 01123456666664 44 588999999999
Q ss_pred EEEc
Q 009274 533 VYYY 536 (538)
Q Consensus 533 vw~~ 536 (538)
||++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9997
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=305.31 Aligned_cols=282 Identities=24% Similarity=0.399 Sum_probs=231.4
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+.||.++|.|++|+ +..|+||+.|.++|+||+.+..+..+.++|...|.|++|+|++. .+++|+.||.|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc-hhhccccCCeEEEecCC
Confidence 4589999999999999 89999999999999999999999999999999999999999665 66999999999999988
Q ss_pred CCCCCcceeeecccCCceeeeEEEE-----eecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHAL-----TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYS 397 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s 397 (538)
+++.. ...+..|..+. ...++ .|..++|++++.||.|+|||+..+.++..+.+|+.+|+|+.|- .+++++
T Consensus 188 tg~~~--g~~l~gH~K~I--t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 188 TGQQI--GRALRGHKKWI--TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred CCCcc--cccccCcccce--eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence 76543 23333443321 12233 2345699999999999999999999999999999999999999 779999
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEE-----------cCCCC-------------------------EEEE
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL-----------TAVQH-------------------------TLVV 441 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-------------------------~l~~ 441 (538)
||.|++|++|+...|.+.+.+++|.... .. ++. .|.++ .+++
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwv-N~-lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWV-NH-LALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchhe-ee-eeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 9999999999999999998888774322 21 233 33333 4999
Q ss_pred EeCCCcEEEEe---CCcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE
Q 009274 442 SHESGSIKVWR---NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL 516 (538)
Q Consensus 442 ~~~dg~i~iwd---~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (538)
|+.|.++.+|+ ..+++..+.+|+.-|+.+.| |+++++++|.|..|++||-.+++....+... ...+..+.+
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH----v~~VYqvaw 417 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH----VAAVYQVAW 417 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc----cceeEEEEe
Confidence 99999999998 34578889999999998876 9999999999999999999999876655421 233444444
Q ss_pred EeCCE-EEEEECCCeEEEEEcCC
Q 009274 517 YWQGK-LFVGCADRTVKVYYYGK 538 (538)
Q Consensus 517 ~~~~~-l~sg~~dg~v~vw~~~~ 538 (538)
+.|.+ |++|+.|.++++|++.+
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeee
Confidence 45666 67799999999999863
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=294.74 Aligned_cols=275 Identities=21% Similarity=0.308 Sum_probs=235.8
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecC-CCCEEEEEcCCCcEEEEEccCCC
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
|-+.+|..+.|+ ++.|+|||.+|.+++|+..+...+.+|.+|...|.++.|+|. +..-+++|+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 567899999999 999999999999999999999999999999999999999998 47688999999999999998754
Q ss_pred CCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcE
Q 009274 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 404 (538)
....+ ..|. ....-.+|+|+|++|+|++.|.+-++||++++..+....||...|.+++|. +.++++|+.|..-
T Consensus 253 ~l~~l---~gH~--~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 253 PLQDL---EGHL--ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred chhhh---hcch--hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 43333 3332 222345899999999999999999999999999999999999999999999 5599999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe---CCCEEEE
Q 009274 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL---EGKWLFT 479 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~---~~~~l~s 479 (538)
+|||+++++++..+.+|. ..+.. +.|+|+|..+++|+.|++++|||++ +.+.++.+|.+-|..+.+ .|.+|+|
T Consensus 328 RvWDlRtgr~im~L~gH~-k~I~~-V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHI-KEILS-VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred heeecccCcEEEEecccc-cceee-EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence 999999999999999864 44455 6999999999999999999999965 578899999999999987 6889999
Q ss_pred EeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEE
Q 009274 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYY 535 (538)
Q Consensus 480 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~ 535 (538)
++.|+++++|...+..+...+... .+.++++-.++++. +++++.|.++++|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGH----e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGH----EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCC----ccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999988765543321 23344444455655 78899999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=287.94 Aligned_cols=267 Identities=21% Similarity=0.296 Sum_probs=235.0
Q ss_pred CCCCccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCC
Q 009274 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDF 282 (538)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~ 282 (538)
--+..++....++.++..+++++..|..++|+ |.||.+.|.++.|+ +..++||+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 34667788999999999999999999999987 78999999999998 458999999999999999999
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 362 (538)
.++..+.+|...|..++|+|+ +.+|.+++.|.+-++||+++.......... .. ....++|.+||..+++|+.|.
T Consensus 252 ~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~ElL~QEGH---s~--~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSELLLQEGH---SK--GVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred cchhhhhcchhhheeeeecCC-CceeeecccccchhhcccccchhhHhhccc---cc--ccceeEecCCCceeeccCccc
Confidence 999999999999999999995 558899999999999999987554333322 21 122458899999999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEeCC--EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEE
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTL 439 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 439 (538)
.-+|||+++|+++..+.+|..+|.+|+|+++ .+++||.|++++|||++..+.+.++..|. ..+.. +.++| .|.+|
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~-nlVS~-Vk~~p~~g~fL 403 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS-NLVSQ-VKYSPQEGYFL 403 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc-chhhh-eEecccCCeEE
Confidence 9999999999999999999999999999933 89999999999999999999988888774 34444 58887 78899
Q ss_pred EEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 440 VVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 440 ~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
++++.|+++++|... .+++.+.+|.+.|.++.. ++++++|++.|.++++|.
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999854 589999999999999875 999999999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=279.41 Aligned_cols=273 Identities=21% Similarity=0.358 Sum_probs=233.5
Q ss_pred CCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 251 h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
..+.|.|+.+.++.+++|..|++|+|||.++..++..+.+|++.|.|+.| +.+++++|+.|.+|++||++++...+.
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCchhhH
Confidence 56789999999999999999999999999999999999999999999999 566999999999999999998876655
Q ss_pred eeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc---eeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEE
Q 009274 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT---LSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLW 407 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iw 407 (538)
+.. +...+..+-.++.++++++.|.++.+||+.+.. +.+.+.||...|+.+.|++++++++|.|.+|++|
T Consensus 273 lih-------HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 273 LIH-------HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 345 (499)
T ss_pred Hhh-------hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEE
Confidence 443 333467778889999999999999999997654 3345689999999999999999999999999999
Q ss_pred ECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEeCCCEEEEEeCCCe
Q 009274 408 SLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKT 485 (538)
Q Consensus 408 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~ 485 (538)
++.+++.++++.+|..+. .+....++++++|+.|.+|++|| .+.++..+++|..-|.|+.||.+.+++|+.||+
T Consensus 346 ~~st~efvRtl~gHkRGI----AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGI----ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred eccceeeehhhhcccccc----eehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccce
Confidence 999999999998876543 45667899999999999999999 467899999999999999999999999999999
Q ss_pred EEEEecCCCeeEeeeec----CCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 486 VSVQELAGDEFEEDVIP----TGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 486 v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
|++||+....-...... .....+..-+.-+.+++-++++++.|.+|.||||-
T Consensus 422 ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 422 IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred EEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcC
Confidence 99999986543211111 11122444566777888889999999999999984
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=266.88 Aligned_cols=281 Identities=21% Similarity=0.364 Sum_probs=235.5
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
.++||.++|.|+++. +.+|+||+.|++|+|||+.+|+...++.+|-..|..+++++ ...++++++.|+.|+.||++.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechh
Confidence 478999999999999 89999999999999999999999999999999999999987 455789999999999999986
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCC
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG 402 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg 402 (538)
.+ .++.+.++.. ...++++.|.-+.|++|+.|.++++||+++...+..+.||..+|.++.+. +..+++||.|+
T Consensus 225 nk---vIR~YhGHlS--~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 225 NK---VIRHYHGHLS--GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hh---hHHHhccccc--eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 54 3333333222 12234555667799999999999999999999999999999999999998 88999999999
Q ss_pred cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe-CCCEEEE
Q 009274 403 TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-EGKWLFT 479 (538)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~-~~~~l~s 479 (538)
+|++||++.|+...++..|... ..+++.+|....+++++.| .|+-|+.. ..++.+.+|...|++++. +..++++
T Consensus 300 tvrlWDl~agkt~~tlt~hkks--vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKS--VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred eEEEeeeccCceeEeeecccce--eeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEE
Confidence 9999999999999988876543 3347899999999999888 68999954 466779999999999987 7789999
Q ss_pred EeCCCeEEEEecCCCeeEeee---ecCCcccCCCceEEEEEe--CCEEEEEECCCeEEEEEc
Q 009274 480 GGWDKTVSVQELAGDEFEEDV---IPTGAIPCGSVITALLYW--QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 480 gs~dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~v~vw~~ 536 (538)
|+++|.+.+||.+++...+.. ...+.+....-+.+.+++ ..+|++|..|.+|++|+-
T Consensus 377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 999999999999987644332 334444455556666665 567999999999999974
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=252.55 Aligned_cols=286 Identities=24% Similarity=0.382 Sum_probs=223.6
Q ss_pred EEEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCC-----CCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 243 VKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLK-----DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
+..-++++|.+.|+.++.. .+.+++++.|.++.+|++. .|..++.+++|+..|..++.+++ +.++++++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-CceEEecccc
Confidence 4455799999999999997 7899999999999999874 47788999999999999999885 5578999999
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC--CCCCeEEEEEeC
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVCN 392 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~ 392 (538)
+++++||+.+++.. ..+..|.. . ....++++|.+.+++|+.|.+|++||+.. .+..++.. +.+.|+|+.|++
T Consensus 85 ~~lrlWDl~~g~~t---~~f~GH~~-d-Vlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 85 GTLRLWDLATGEST---RRFVGHTK-D-VLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred ceEEEEEecCCcEE---EEEEecCC-c-eEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcC
Confidence 99999999987433 33333332 1 22458889999999999999999999865 44444433 378999999993
Q ss_pred C----EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCccee-eeccccceE
Q 009274 393 G----VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK-SMQTHKGSV 467 (538)
Q Consensus 393 ~----~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~h~~~v 467 (538)
+ ++++++.|+++++||+++.+....+.+| .+.+.. +.++|||...++|+.||.+.+||+++... ....|...|
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t-~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v 236 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYVNT-VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIV 236 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccc-cccEEE-EEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeE
Confidence 3 8999999999999999999988888776 344444 69999999999999999999999765333 334588899
Q ss_pred EEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCccc----CCCceEEEEE-eCCE-EEEEECCCeEEEEEcC
Q 009274 468 FAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIP----CGSVITALLY-WQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 468 ~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~-l~sg~~dg~v~vw~~~ 537 (538)
.+++| -.++.+....+..|+|||++++.....+......+ .......++| .+|. |++|-.|+.|++|.+.
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99998 44555555566779999999887665544433222 1223334444 4554 9999999999999875
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=263.95 Aligned_cols=370 Identities=19% Similarity=0.287 Sum_probs=271.6
Q ss_pred hcCccchHHHHHhhhhccCCCCCcchh---hHHHHHHHhhcCCCccccccccCcccCcccchhhhccccccCcccccccc
Q 009274 130 FGSEFVSLQLMFCQCLNFDPGCRPLLT---NVWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKERLETE 206 (538)
Q Consensus 130 ~~~~~~~l~~~~~~~l~~~p~~r~~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (538)
++.+|.+-.+-+ ++...|..-|... ++...+++++ +.........+|+|++.+++.+.+...+-
T Consensus 8 vqvrF~Tk~e~~--aVpD~p~~iP~~~~r~gLs~ivN~ll---------~se~~~~K~~pFDFLi~gelLRtsL~e~l-- 74 (423)
T KOG0313|consen 8 VQVRFFTKNEDY--AVPDVPFAIPTSVERYGLSNIVNKLL---------KSENGFWKPVPFDFLIKGELLRTSLDEHL-- 74 (423)
T ss_pred EEEEEEeccccc--CCCCcceeccCcceEccHHHHHHHHH---------hccCCcCCCCcceEEEcceeeeccHHHHH--
Confidence 344444443333 5666677767753 4555556655 23444556789999999999998876532
Q ss_pred chhhhcCCCCCCCccceeeeeccCcceeEEeecCCeEEEEEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 207 DKDELLGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
.+...+.+.. - .-.++.+..... .+. ---|.+.|.++...+++++||++||.+++||. .|+...
T Consensus 75 -~~kgiSsE~~--l----------eIEYv~~~~aP~-pl~-~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~ 138 (423)
T KOG0313|consen 75 -EEKGISSEEI--L----------EIEYVEAITAPK-PLQ-CFLHDDWVSSVKGASKWILTGSYDGTSRIWDL-KGKSIK 138 (423)
T ss_pred -HHcCcChhhe--e----------EEEEEEecCCCC-ccc-cccchhhhhhhcccCceEEEeecCCeeEEEec-CCceEE
Confidence 2222222221 0 111222222211 122 23499999999999999999999999999996 589999
Q ss_pred EEecCCcCeEEEEEecC--CCCEEEEEcCCCcEEEEEccCCCCCcceeee-cccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 287 TFKGHDHKVMAVVYVDE--DQPLCISGDSGGGIFVWSFSFPLGHEPLKKW-NEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
++.+|.++|.+++|... ....|++++.|.++++|.++.+......... .+|. ......+..+++..+++|+.|.+
T Consensus 139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk--~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK--RSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc--cceeEEEecCCCCeEEeecccce
Confidence 99999999999998743 3347899999999999999876543322222 1222 22223456678889999999999
Q ss_pred EEEEECCC-------------------------CceeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEE
Q 009274 364 IKAWSLLD-------------------------GTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTV 417 (538)
Q Consensus 364 i~iwd~~~-------------------------~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~ 417 (538)
|++|+..+ +.++.++.+|..+|.++.|+ ...+++++.|.+|+.||+.++....+
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~ 296 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKST 296 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceee
Confidence 99999321 23566788999999999999 66999999999999999999999888
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-----ceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEE
Q 009274 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-----FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQ 489 (538)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iw 489 (538)
+.... ...++..+|..++|++|+.|..+++||.++ ..+++.+|++.|.++.| +...|++|+.|+++++|
T Consensus 297 ~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 297 LTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred eecCc---ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 87643 344468899999999999999999999664 56788999999999987 77899999999999999
Q ss_pred ecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEEEcC
Q 009274 490 ELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~~~ 537 (538)
|+++.+-....... +..-+.++.|.++ .+++|+.|.+|++++..
T Consensus 374 DvRS~k~plydI~~----h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 374 DVRSTKAPLYDIAG----HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EeccCCCcceeecc----CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 99987622222222 4556777777766 68899999999999753
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=248.57 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=230.7
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..|+||.+.|.++.|+ .++++++|.||.+.|||.-+...++.++-....|..++|+| .++++++|+.|....||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecc
Confidence 5699999999999999 89999999999999999999999999999999999999999 45688999999999999998
Q ss_pred CCCCC---cceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEE
Q 009274 324 FPLGH---EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYS 397 (538)
Q Consensus 324 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s 397 (538)
+.... ...+.+..|.. +.+++.|.. ...|+|++.|.++.+||+++++.+..|.+|.+.|.+++++ ++.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtg--ylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTG--YLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccc--eeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 66333 22233333333 233333433 6689999999999999999999999999999999999998 469999
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeecc--ccceEEEEEe-
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT--HKGSVFAVFL- 472 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--h~~~v~~~~~- 472 (538)
|+.|++.++||+|.+.++++|.+|... +.. +.|.|+|.-+++|+.|++.++||++. .+..+.. -..+|++++|
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesD-INs-v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESD-INS-VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred cccccceeeeeccCcceeEeecccccc-cce-EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 999999999999999999999988554 344 69999999999999999999999775 4444442 3357788888
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE-EeCCE-EEEEECCCeEEEEE
Q 009274 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL-YWQGK-LFVGCADRTVKVYY 535 (538)
Q Consensus 473 -~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-l~sg~~dg~v~vw~ 535 (538)
.|++|+.|..|.++.+||.-.++....+.. |...++++- .+||. +.+|+.|.+++||.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-----HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-----HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEeec-----cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 899999999999999999987775554442 334555554 45776 77899999999994
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=267.95 Aligned_cols=257 Identities=25% Similarity=0.424 Sum_probs=226.1
Q ss_pred cCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEE
Q 009274 229 GGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 299 (538)
-++..+++|+.+..+++|+ +.||++.|.|+.|..+.+++||.|.+|++||+++++++.++-+|...|..+.
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR 284 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence 3577899999999999998 6799999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec
Q 009274 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS 379 (538)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 379 (538)
|+ +.++++++.|.++.+||+..+..........++. ..+..+..+.+++++++.|.+|++|++.+++.+.++.
T Consensus 285 f~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr----AaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~ 357 (499)
T KOG0281|consen 285 FS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR----AAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN 357 (499)
T ss_pred Ee---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh----hheeeeccccceEEEecCCceEEEEeccceeeehhhh
Confidence 95 4588999999999999999876544444444433 3466778889999999999999999999999999999
Q ss_pred CCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc----
Q 009274 380 GHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK---- 455 (538)
Q Consensus 380 ~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---- 455 (538)
+|...|-|+.+.+.++++||.|.+|++||+..|.+++.+++|.. .+. ++-.|.+.+++|+.||+|++||...
T Consensus 358 gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvR---ciRFd~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 358 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVR---CIRFDNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH-hhh---heeecCceeeeccccceEEEEecccccCC
Confidence 99999999999999999999999999999999999999988754 332 3445678999999999999999542
Q ss_pred -------ceeeeccccceEEEEEeCCCEEEEEeCCCeEEEEecCCCee
Q 009274 456 -------FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEF 496 (538)
Q Consensus 456 -------~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~ 496 (538)
++..+..|.+.|..+.||...+++++.|.+|-|||+.++..
T Consensus 434 ra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 434 RAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 45566779999999999999999999999999999977653
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=237.54 Aligned_cols=265 Identities=22% Similarity=0.352 Sum_probs=212.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCcee
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRY 342 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 342 (538)
-+|+|+|.|.+||+|...+|.+..+++...+.|+.+...|+...+ ++++ ...|++||+++.... ++..+..+.. .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~L-Aaa~-~qhvRlyD~~S~np~-Pv~t~e~h~k--N 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDL-AAAG-NQHVRLYDLNSNNPN-PVATFEGHTK--N 85 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchh-hhcc-CCeeEEEEccCCCCC-ceeEEeccCC--c
Confidence 469999999999999999999999999888999999999966544 4444 478999999987654 5555555533 1
Q ss_pred eeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC--CEEEEEecCCcEEEEECCCCceeEEEec
Q 009274 343 SGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEE 420 (538)
Q Consensus 343 ~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 420 (538)
.....|..+|+.+++|++||+++|||++...+-+.+. |..+|+++..++ ..|++|..+|.|++||+.+..+...+..
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence 2345788899999999999999999999966666655 789999999993 4999999999999999999887777765
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--------cceeeeccccceEEEE--EeCCCEEEEEeCCCeEEEEe
Q 009274 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--------KFMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------~~~~~~~~h~~~v~~~--~~~~~~l~sgs~dg~v~iwd 490 (538)
... .....+.+.|||.+++.+...|..++|++- .++.+++.|.+-+..+ +||+++|+++|.|.+++||+
T Consensus 165 e~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 165 EDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 544 334447999999999999999999999842 2567788999988776 45999999999999999999
Q ss_pred cCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEcC
Q 009274 491 LAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
.++. +.......+. ...+..++|+.|+. |++|+.|+.+++|+++
T Consensus 244 ~~~~-~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 244 TDDF-FKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred cCCc-eeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccc
Confidence 9988 2222222221 23455566666665 8899999999999985
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=239.03 Aligned_cols=263 Identities=18% Similarity=0.290 Sum_probs=224.8
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC------c
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF------S 283 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~------~ 283 (538)
.|.....+.+.+.+++++.+|++.+|+. .--..+|..++|+ ++++|+|+-|+...||++.+. +
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 4778888999999999999999999983 2345789999998 999999999999999999854 4
Q ss_pred eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCC
Q 009274 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDR 362 (538)
Q Consensus 284 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg 362 (538)
..+.+.+|++.+.++.|.+ ...+++++.|.+..+||+++++... .+..|... . ..++++| +++.+++|+.|+
T Consensus 137 v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gD-V-~slsl~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGD-V-MSLSLSPSDGNTFVSGGCDK 209 (343)
T ss_pred eeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEE---EecCCccc-E-EEEecCCCCCCeEEeccccc
Confidence 4567899999999999986 3357999999999999999875443 34444332 1 1346677 889999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (538)
..++||++.+.++++|.+|.+.|+++.|. +.-+++|+.|++.++||+|..+.+..+...........++|+..|++|+
T Consensus 210 ~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred ceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence 99999999999999999999999999999 4589999999999999999999988887655444445579999999999
Q ss_pred EEeCCCcEEEEeC--CcceeeeccccceEEEEE--eCCCEEEEEeCCCeEEEEe
Q 009274 441 VSHESGSIKVWRN--DKFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 441 ~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~--~~~~~l~sgs~dg~v~iwd 490 (538)
+|..|.++.+||. .+....+.+|.+.|.|+. +||..++|||+|.++|||.
T Consensus 290 agy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999994 456778899999999985 5999999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=249.10 Aligned_cols=299 Identities=19% Similarity=0.248 Sum_probs=240.6
Q ss_pred ceeeeeccCcc-eeEEeecCCeEEEEEeec-------------------C----CCcEEEEEEc--CCEEEEEeCCCcEE
Q 009274 222 IDQARAAGGVK-DLVNGLSKGNVKFKDLQG-------------------H----RDCVTGLAVG--GGFLFSSSFDKSIH 275 (538)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~-------------------h----~~~V~~l~~~--~~~l~s~s~dg~i~ 275 (538)
+......+... .++++..+...++|++.. + ...|++++|+ |..||+|+.||.++
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 33344444444 566677777778887642 2 2589999999 99999999999999
Q ss_pred EEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeec-CCE
Q 009274 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRY 354 (538)
Q Consensus 276 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 354 (538)
+|+. +|..+.++..|.++|.++.|+. .+.++++++.|+++.+||..++.....+..... ....+.+. ...
T Consensus 261 iw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~-------~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 261 IWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA-------PALDVDWQSNDE 331 (524)
T ss_pred EEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccC-------CccceEEecCce
Confidence 9995 5788889999999999999977 455889999999999999876654433332211 12234443 448
Q ss_pred EEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 009274 355 LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (538)
Q Consensus 355 l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (538)
+++++.|+.|+++.+....++.++.+|.++|.++.|+ +.+|+++|.|++++||++........+..|.... .+ +.|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei-~t-~~w 409 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI-YT-IKW 409 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce-ee-Eee
Confidence 9999999999999999999999999999999999999 6799999999999999999888888888775433 33 577
Q ss_pred cCCC---------CEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEee
Q 009274 433 TAVQ---------HTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (538)
Q Consensus 433 ~~~~---------~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~ 499 (538)
+|.| ..+++++.|++|++||. +.++..+..|+.+|++++| +|+++++|+.||.|.+|+..++++...
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 7654 47999999999999994 5688899999999999987 899999999999999999999988766
Q ss_pred eecCCcccCCCceEEEEEe--CCEEEEEECCCeEEEEEcC
Q 009274 500 VIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~v~vw~~~ 537 (538)
.... ..+..++|+ ++++.++-.||.+.+-|+.
T Consensus 490 ~~~~------~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 490 YQGT------GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecCC------CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 5533 245666665 5567788899999999875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=226.16 Aligned_cols=289 Identities=19% Similarity=0.290 Sum_probs=223.2
Q ss_pred eEEEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC---CceEEEE-ecCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 242 NVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD---FSHVHTF-KGHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~---~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
-+.+..+++|.+.|..++|+ |..||||+.|+.|++|+... ..+...+ .+|+..|.+++|+|.++ +|++++.|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD 82 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFD 82 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeecc
Confidence 34677899999999999999 34899999999999999875 3334344 36999999999999655 88999999
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC---ceeEEecCCCCCeEEEEEe
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG---TLSCTMSGHKSAVSTLAVC 391 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~ 391 (538)
.++.||.-..+. -..+..+.+|.. ...+.+++.+|++|++++.|+.|-+|.+..+ ++...++.|...|..+.|+
T Consensus 83 ~t~~Iw~k~~~e-fecv~~lEGHEn--EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 83 ATVVIWKKEDGE-FECVATLEGHEN--EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ceEEEeecCCCc-eeEEeeeecccc--ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 999999755332 122334444432 2335688999999999999999999998744 5778889999999999999
Q ss_pred C--CEEEEEecCCcEEEEECCC---CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeeccccce
Q 009274 392 N--GVLYSGSRDGTIRLWSLSD---HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGS 466 (538)
Q Consensus 392 ~--~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~ 466 (538)
+ ++|+++|.|++|++|+-.. -.+.+++..++. . .-++.|++.|..|++++.|++++||..... .-..|...
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-T-VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~~~~~sr~ 235 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-T-VWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--LSGMHSRA 235 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-e-EEEEEecCCCceEEEecCCcceEeeeeccC--cchhcccc
Confidence 5 7999999999999998762 356888877754 3 334799999999999999999999984421 11347889
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeee--ecCCcccCCCceEEEEEe---CCEEEEEECCCeEEEEEcCC
Q 009274 467 VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDV--IPTGAIPCGSVITALLYW---QGKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 467 v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~v~vw~~~~ 538 (538)
+..+.|+...|++++.|+.|++|.-......... .......|+.-++++.+. .++|++|+.||.|++|.+.+
T Consensus 236 ~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~~ 312 (312)
T KOG0645|consen 236 LYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELEI 312 (312)
T ss_pred eEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEecC
Confidence 9999999889999999999999987643211111 111112244456666665 46799999999999999853
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=261.34 Aligned_cols=281 Identities=15% Similarity=0.232 Sum_probs=231.6
Q ss_pred eEEEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC-CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcE
Q 009274 242 NVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 317 (538)
...+.++.||+..|+++.|. +.+|++++.|+.|+||++-+ +++++++.+|..+|.+++|++++. .+++++.|+.+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-eeeeeecceee
Confidence 34567899999999999998 89999999999999999865 899999999999999999988555 56899999999
Q ss_pred EEEEccCCCCCcceeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCE
Q 009274 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGV 394 (538)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~ 394 (538)
++||+++++....+..- ....+..+.|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|- +..
T Consensus 283 KlwDtETG~~~~~f~~~------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEEEecC------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence 99999998765554432 333467888888 699999999999999999999999999999999999998 569
Q ss_pred EEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-----cceeeeccccceEEE
Q 009274 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-----KFMKSMQTHKGSVFA 469 (538)
Q Consensus 395 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~h~~~v~~ 469 (538)
+++.+.|+++++|+.+....+...... ......++..+|+++++++-+.|+.|.+|.+. +..+.+++|..+=.+
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcch-hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 999999999999999988776555433 22333447899999999999999999999844 345677888654433
Q ss_pred E----EeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe---CCEEEEEECCCeEEEEE
Q 009274 470 V----FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW---QGKLFVGCADRTVKVYY 535 (538)
Q Consensus 470 ~----~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~v~vw~ 535 (538)
+ ++||.+|++|+.||.+.+||.++-++...... +..++..+.|. .+.+++|+.||.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-----h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-----HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-----CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 3 45999999999999999999998876554443 22344555554 45699999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=227.33 Aligned_cols=241 Identities=24% Similarity=0.438 Sum_probs=194.4
Q ss_pred EEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 243 VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
..++.|+||...|..+..+ +++.++++.|+++++||+.+++..+.|.+|...|.+++|++++. .+++|+.|.+|++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklw 132 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLW 132 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeee
Confidence 3455688999999999998 99999999999999999999999999999999999999998554 66999999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeec--CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLY 396 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~ 396 (538)
++-... .. ............+..|+|+ ..+|++++.|++|++||+++.+....+.+|++.++.++++ +.+++
T Consensus 133 nt~g~c---k~-t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 133 NTLGVC---KY-TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred eecccE---EE-EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEe
Confidence 986431 11 1111111345567788998 4599999999999999999999999999999999999999 45999
Q ss_pred EEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeee----ccc-----cc
Q 009274 397 SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSM----QTH-----KG 465 (538)
Q Consensus 397 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~----~~h-----~~ 465 (538)
+|+.||.+.+||++.++.+..+... . ....++|+|+.-.|+.+.. ..|+|||+.. .+..+ .+. ..
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a~--~-~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~ 284 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEAF--D-IVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDP 284 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccCC--C-eEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCc
Confidence 9999999999999999998887643 2 3445799998877766654 4699999543 22222 122 22
Q ss_pred eEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 466 SVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 466 ~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
...+++| ||..|++|-.|+.|++|.+.
T Consensus 285 ~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 285 ICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3344555 89999999999999999875
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=242.45 Aligned_cols=280 Identities=22% Similarity=0.309 Sum_probs=231.2
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
...+.||..+|+.+-|+ -..+++++.|++|++||..+++....+++|.+.|.+++|.. .+.++++++.|-.+++||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeH
Confidence 35578899999999999 56677888899999999999999999999999999999987 4578899999999999998
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR 400 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~ 400 (538)
.+. -..++....+. +..+..++-|.|+++++++.|.+|+.|++.++.++.++.+|...|..++.+ +..+++|+.
T Consensus 180 ~~~--~~c~ks~~gh~--h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 180 DTF--FRCIKSLIGHE--HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred HHH--HHHHHHhcCcc--cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 752 12222222222 444566888899999999999999999999999999999999999999999 448899999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCC---------------CCEEEEEeCCCcEEEEe--CCcceeeeccc
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV---------------QHTLVVSHESGSIKVWR--NDKFMKSMQTH 463 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~dg~i~iwd--~~~~~~~~~~h 463 (538)
|.++++|-+.++++...+..|.. ..-+++|.|. +.++.+++.|++|++|| ++.++.++.+|
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred CceEEEEEeccchhhhhhhcccc--ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999999977766665532 2222344322 35899999999999999 55688999999
Q ss_pred cceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC--EEEEEECCCeEEEEEc
Q 009274 464 KGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKVYYY 536 (538)
Q Consensus 464 ~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~~dg~v~vw~~ 536 (538)
..+|..+++ .|++|+++.+|+++++||+++.++...... +...++++.++.. ++++|+-|-++++|.-
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-----h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-----HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-----CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999987 699999999999999999999987665543 3446777777744 5888999999999973
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=225.09 Aligned_cols=278 Identities=15% Similarity=0.260 Sum_probs=224.0
Q ss_pred eEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
..++..+..|.++|.++.|+ |+|.++++.|++|++|+...+.+++++.+|...|..++.+.++. -+++|+.|..+.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQV 85 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc-ccccCCCCceEEE
Confidence 44667789999999999999 99999999999999999999999999999999999999887555 5699999999999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC--CceeEEecCCCCCeEEEEEeCCEEEE
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD--GTLSCTMSGHKSAVSTLAVCNGVLYS 397 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~l~s 397 (538)
||+++++....+...... .. ...|..+...+++|+.|.++++||.++ .++++.+....+.|.++...+..+++
T Consensus 86 wDV~TGkv~Rr~rgH~aq----VN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIva 160 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQ----VN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVA 160 (307)
T ss_pred EEcccCeeeeecccccce----ee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEe
Confidence 999998765555443222 11 235555566999999999999999976 46888888889999999999999999
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEE--e-
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVF--L- 472 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~--~- 472 (538)
|+.||+++.||++.|+......++ ...+++++++++..++++.|+++++.| +++.++.+++|.+.-..+. +
T Consensus 161 GS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred eccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 999999999999999876665433 344579999999999999999999998 6789999999988765543 3
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeC--CEEEEEECCCeEEEE
Q 009274 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKVY 534 (538)
Q Consensus 473 -~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sg~~dg~v~vw 534 (538)
....+++|++||.|++||+.+......+.... ...+..+.+.. ..|+++...+ +..|
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~----~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS----TVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCC----ceeEEeeecccCccceeEecCCc-eece
Confidence 66789999999999999999888766555432 22244454442 3366655444 3444
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=263.94 Aligned_cols=231 Identities=26% Similarity=0.415 Sum_probs=204.1
Q ss_pred CCccceeeeeccCcceeEEeecCCeEEEEEe----------------------------------------ecCCCcEEE
Q 009274 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL----------------------------------------QGHRDCVTG 257 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l----------------------------------------~~h~~~V~~ 257 (538)
....+.++.++.+...++.|..+..+++|.+ .||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3456788999999999999999999888874 369999999
Q ss_pred EEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec
Q 009274 258 LAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335 (538)
Q Consensus 258 l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 335 (538)
+.|+ .++|+++|.|++||+|.+.+..++..+++|..+|+++.|+| .+.+|+|++.|++.++|..........+.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifa--- 532 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFA--- 532 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhc---
Confidence 9999 89999999999999999999999999999999999999998 57799999999999999988644333333
Q ss_pred ccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCc
Q 009274 336 EEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS 413 (538)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~ 413 (538)
.+.. -..++.|+|+.+++++||.|.+|++||+.+|..++.|.||.++|.+++|+ +.+|++|+.||.|.+||+.+++
T Consensus 533 ghls--DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 533 GHLS--DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cccc--ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 3321 22367999999999999999999999999999999999999999999999 6799999999999999999999
Q ss_pred eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 009274 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF 456 (538)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 456 (538)
.+..+..| .+.+.+ +.|+.+|..|++|+.|++|++||..+.
T Consensus 611 ~v~~l~~H-t~ti~S-lsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 611 LVKQLKGH-TGTIYS-LSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred chhhhhcc-cCceeE-EEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999988 555555 799999999999999999999996543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=231.47 Aligned_cols=266 Identities=20% Similarity=0.292 Sum_probs=226.7
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEE----------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
...|..+.|.+++..++++..|..+.+|+ +++|+++|..+.|. ++.+++++.|.+|+.||+++|+.++
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 45688999999999999999999999998 68999999999998 9999999999999999999999999
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEE
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~i 366 (538)
.+++|...|+++.-+.-+..++.+++.||++++||+++....+...... .....+|.-.+..+.+|+-|+.|++
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky------qltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY------QLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce------eEEEEEecccccceeeccccCceee
Confidence 9999999999999777788899999999999999999655444432211 1112355556779999999999999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCC----ceeEEEecCCCCc--eEEEEEEcCCCCE
Q 009274 367 WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH----SLLTVLEEDSSGA--VSSVLSLTAVQHT 438 (538)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~ 438 (538)
||++.+.....+.||.++|+.+..+ +.++++-+.|.++++||++-. +++..+.++.... ....++|+|++..
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 9999999999999999999999999 679999999999999999853 3466665543221 1222589999999
Q ss_pred EEEEeCCCcEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 439 LVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 439 l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
+.+|+.|+.+++||. +..+..+.+|.+.|.++.| ....|.+++.|.+|++=.
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999994 4688999999999999987 788999999999998743
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=250.97 Aligned_cols=267 Identities=20% Similarity=0.360 Sum_probs=225.6
Q ss_pred CCCCccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCce
Q 009274 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH 284 (538)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~ 284 (538)
+.-..+|+.+...++++++++++..|...+|+ ++.|..+|+++.|+ +.+++||+.+|.|++|+..- ..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nn 171 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NN 171 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hh
Confidence 33445688899999999999999999999998 46899999999998 99999999999999999754 44
Q ss_pred EEEEecC-CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 285 VHTFKGH-DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 285 ~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
++.++.| ...|.+++|+|++. .|++++.||+|+|||....+....+.. +++.. .++.++|....+++|+.|..
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~G----HgwdV-ksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRG----HGWDV-KSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheecc----CCCCc-ceeccCCccceeEEccCCce
Confidence 5555555 49999999999554 669999999999999987776665533 22222 24578888889999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEE
Q 009274 364 IKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLV 440 (538)
Q Consensus 364 i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 440 (538)
|++||.++++++.++.+|+..|..+.|+ +++|+++|.|..++++|+++.+.+..++.|.... .+ +.|+| +..+|.
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv-~~-~~WhP~~~~lft 323 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDV-TS-LTWHPLNESLFT 323 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhh-ee-ecccccccccee
Confidence 9999999999999999999999999999 6799999999999999999999999998876543 33 56776 567899
Q ss_pred EEeCCCcEEEEeCC--cceeee-ccccceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 441 VSHESGSIKVWRND--KFMKSM-QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 441 ~~~~dg~i~iwd~~--~~~~~~-~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
+|+.||.|..|... +++-.+ .+|...|+++++ -|..|++|+.|.++++|.-
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999999999854 444443 569999999987 7999999999999999964
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-30 Score=248.38 Aligned_cols=309 Identities=20% Similarity=0.294 Sum_probs=250.4
Q ss_pred CCccceeeeeccCcceeEEeecCCeEEEEEee------------------------c-------------------CCCc
Q 009274 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ------------------------G-------------------HRDC 254 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~------------------------~-------------------h~~~ 254 (538)
....+....+..+...+++-+.+|.+.+|++. + ....
T Consensus 188 Hkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~k 267 (893)
T KOG0291|consen 188 HKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSK 267 (893)
T ss_pred CCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccc
Confidence 33456667777777888888888888888765 1 1257
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (538)
|+|.+|+ -+.|++|-..|...+|++.+...++.+.-...+|..++|+..+..+.+.++.-|.+-||++.+..-.-..+
T Consensus 268 vtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 268 VTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ 347 (893)
T ss_pred eeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc
Confidence 8899999 67889999999999999999999999998889999999988777666666677999999998654322222
Q ss_pred eecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECC
Q 009274 333 KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLS 410 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 410 (538)
.| .....+.+.+|||+++++|+.||.|++||..++-|..++..|++.|+.+.|+ ++.+++.|.||+|+.||+.
T Consensus 348 ---gH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 348 ---GH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred ---cc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 11 1334467899999999999999999999999999999999999999999999 7799999999999999999
Q ss_pred CCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC-cEEEEe--CCcceeeeccccceEEEEEe--CCCEEEEEeCCCe
Q 009274 411 DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG-SIKVWR--NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKT 485 (538)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd--~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~ 485 (538)
..+..+++..+.+.. ..+++..|.|..+++|+.|. .|.+|+ +++.+..+.+|.++|.++++ ++..|+++|+|.+
T Consensus 423 RYrNfRTft~P~p~Q-fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 423 RYRNFRTFTSPEPIQ-FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred ccceeeeecCCCcee-eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence 999999998875544 44578999999999998875 589998 66789999999999998765 8999999999999
Q ss_pred EEEEecCCCeeEe-eeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEcC
Q 009274 486 VSVQELAGDEFEE-DVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 486 v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
||+||+-...-.. .... ...+....+.|+|. +++++.||.|.+||.+
T Consensus 502 VRiW~if~s~~~vEtl~i-----~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETLEI-----RSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred EEEEEeeccCceeeeEee-----ccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 9999996552111 1111 12234445556665 9999999999999975
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=248.37 Aligned_cols=275 Identities=23% Similarity=0.307 Sum_probs=224.8
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (538)
.-+.+|..+.|. |+.|++|+..|.+.+|+..+......++.|..+|.++.|++ ++..+++|+.+|.|++|+....
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-- 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-- 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh--
Confidence 345789999999 89999999999999999866555556678999999999998 4557799999999999987632
Q ss_pred CcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEE
Q 009274 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIR 405 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~ 405 (538)
.++....++. .....++|+|+...++++++||+|+|||....+....+.+|.-.|.+++|+ .+++++||.|..|+
T Consensus 171 --nVk~~~ahh~-eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVK 247 (464)
T KOG0284|consen 171 --NVKIIQAHHA-EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVK 247 (464)
T ss_pred --hhHHhhHhhh-hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeE
Confidence 2223333332 222356889988899999999999999999999988999999999999999 56999999999999
Q ss_pred EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe---CCCEEEEE
Q 009274 406 LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL---EGKWLFTG 480 (538)
Q Consensus 406 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~---~~~~l~sg 480 (538)
+||.++++++.++..|.. .+.. +.|++++++|++++.|..++++|++ +.++.+++|...++++.| ...+|.+|
T Consensus 248 lWDprSg~cl~tlh~HKn-tVl~-~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKN-TVLA-VKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred eecCCCcchhhhhhhccc-eEEE-EEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 999999999999987743 3333 6899999999999999999999977 467888999999999976 88999999
Q ss_pred eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE-EEEEECCCeEEEEEc
Q 009274 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 481 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~sg~~dg~v~vw~~ 536 (538)
+.||.|..|.+...+....... .+...+..+.+ |=|+ |++|+.|.++++|.=
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~----AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPP----AHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cCCCceEEEeccccccccCCCc----ccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999999985443322222 24445555555 4455 667999999999963
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=236.61 Aligned_cols=263 Identities=22% Similarity=0.389 Sum_probs=228.0
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC-CceEEEE
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD-FSHVHTF 288 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~ 288 (538)
.+..+.+.+....+++++.+..+++|+ |+||.+.|..++|+ |+++++++.|-.+++||.++ .++++.+
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh
Confidence 355666677777777787888888887 68999999999999 99999999999999999976 6778888
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
.+|+..|.++.|.|.+ .++++++.|.+|+.|++.++.+...+.. +.. ...+..+..||..+++++.|.+|++|-
T Consensus 190 ~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~---h~e--wvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPG---HSE--WVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred cCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccC---chH--hEEEEEecCCeeEEEecCCCceEEEEE
Confidence 9999999999999976 6889999999999999998866555443 333 344567778899999999999999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEe------------C-----CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEE
Q 009274 369 LLDGTLSCTMSGHKSAVSTLAVC------------N-----GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLS 431 (538)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~------------~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 431 (538)
+.++++...++.|..+|-|++|. + .++.+++.|++|++||+.++.++.++.+|.. .+.. ++
T Consensus 264 ~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~-~a 341 (406)
T KOG0295|consen 264 VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRG-VA 341 (406)
T ss_pred eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeee-eE
Confidence 99999999999999999999984 2 2899999999999999999999999998744 4444 69
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 432 LTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 432 ~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
|+|.|++|+++..|+++++||.+ ++...+..|..-++++++ +-.+++||+-|.++++|.-
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999954 578888999999999998 6669999999999999964
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=254.90 Aligned_cols=263 Identities=23% Similarity=0.323 Sum_probs=219.5
Q ss_pred ccCcceeEEeecCCeEEEEE--------eecCCCcEEEEE-Ec-CCEEEEEeCCCcEEEEeCCCC----ceEEEEecCCc
Q 009274 228 AGGVKDLVNGLSKGNVKFKD--------LQGHRDCVTGLA-VG-GGFLFSSSFDKSIHVWSLKDF----SHVHTFKGHDH 293 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~i~~--------l~~h~~~V~~l~-~~-~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~ 293 (538)
.+.+..++.+...+.+++++ +.||++.|.++. |+ |.+|+|||.|.++++|.++++ .++....+|++
T Consensus 333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 44567778888888888776 579999999998 45 779999999999999988543 23556678999
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeee----cccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW----NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
.|.+++++..+..+|++++.|+++++|++...+.......+ .......-..+++++|+.+.++|||.|.+.++|++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 99999999888999999999999999999863332221111 11111122335688999999999999999999999
Q ss_pred CCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCc
Q 009274 370 LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS 447 (538)
Q Consensus 370 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 447 (538)
.+.....++.||+..|.|+.|+ +..++++|.|++|+||.+.+..++.++.+|... +.. ..|-.++..|++++.||.
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-Vlr-a~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-VLR-ASFIRNGKQLISAGADGL 570 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce-eEe-eeeeeCCcEEEeccCCCc
Confidence 9999999999999999999999 559999999999999999999999999988543 333 578889999999999999
Q ss_pred EEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 448 IKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 448 i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+++|+. ..+.+++..|...|++++. .+..++||+.||.|.+|.=.
T Consensus 571 iKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 571 IKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 999994 5689999999999999975 77799999999999999643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=259.17 Aligned_cols=250 Identities=23% Similarity=0.365 Sum_probs=213.5
Q ss_pred ecCCeEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC-------------------------------Cce
Q 009274 238 LSKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD-------------------------------FSH 284 (538)
Q Consensus 238 ~~~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~-------------------------------~~~ 284 (538)
.....++++++..-...++|..|+ +.++|.|-.|..|++|.+.. ...
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 345677888888888899999999 78899999999999998762 122
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcE
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 364 (538)
..++.+|.++|..+.|+| +.++|++++.|+++++|.+.+...... ..+|. .....+.|+|.|-++++|+.|++.
T Consensus 444 ~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~---y~GH~--~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVI---YKGHL--APVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred eEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEE---ecCCC--cceeeEEecCCceEEEecCCCcee
Confidence 345779999999999999 456889999999999999987543322 22332 222345688999999999999999
Q ss_pred EEEECCCCceeEEecCCCCCeEEEEEeC--CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 009274 365 KAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 365 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
++|......+++.+.+|.+.|.|+.|++ +++++||.|.++++||+.+|..++.+.+| .+.+.+ ++++|+|++|++|
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~a-l~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTA-LAFSPCGRYLASG 595 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEE-EEEcCCCceEeec
Confidence 9999999999999999999999999994 49999999999999999999999999886 455554 7999999999999
Q ss_pred eCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+.||.|.+||+. +.+..+.+|++.|.+++| +|..|++||.|++|++||+....
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999954 588899999999999988 99999999999999999986543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=225.24 Aligned_cols=279 Identities=19% Similarity=0.277 Sum_probs=221.9
Q ss_pred eEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeC-CCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL-KDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
...+-.+.||++.|..+.|+ |.+|+||+.|..|.+|++ ...+....+++|++.|..+.|.++ +..+++++.|.+++
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVR 115 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-CCEEEEecCCceEE
Confidence 34556689999999999999 999999999999999995 556777889999999999999885 55779999999999
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeec---CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG 393 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 393 (538)
.||.++++.....+.. .. .+.++.|. ..++.+|+.|+++++||+++...++++. .+-+++++.|. ..
T Consensus 116 ~wD~~tG~~~rk~k~h---~~----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH---TS----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD 187 (338)
T ss_pred EEecccceeeehhccc---cc----eeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc
Confidence 9999988765554432 22 23334443 3388999999999999999998888875 46789999999 56
Q ss_pred EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC------cceeeeccccc--
Q 009274 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------KFMKSMQTHKG-- 465 (538)
Q Consensus 394 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~h~~-- 465 (538)
.+++|+-|+.|++||++.+.....+.+|.. .++. ++.+++|.++.+-+.|.++++||.+ .++..+.+|.-
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~-lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITG-LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccC-ceee-EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 999999999999999999999999998754 4444 7999999999999999999999965 24667776543
Q ss_pred eE--EEEE--eCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEEECCCeEEEEE
Q 009274 466 SV--FAVF--LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKVYY 535 (538)
Q Consensus 466 ~v--~~~~--~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~v~vw~ 535 (538)
.+ ..++ +++..+..|+.|..+++||.....+....... .+.+....+.| ...+.+++.|.+|++=+
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh----~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH----YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc----ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 22 2333 49999999999999999999987665443321 33344445555 45588999999998744
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-30 Score=248.98 Aligned_cols=281 Identities=19% Similarity=0.300 Sum_probs=223.3
Q ss_pred EEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 245 FKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
...+-|..+.|..++|- .++++.+++.+.+|+|+..+..+. .+.+|+..|.++.... .+.++++|+.|.++++|.
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWR 393 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc-cCcEEEEecCCceEEEEE
Confidence 33467889999999998 499999999999999998877665 8899999999999444 347999999999999999
Q ss_pred ccCCCCCc-ceeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCce-----eE----EecCCCCCeEEEEE
Q 009274 322 FSFPLGHE-PLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTL-----SC----TMSGHKSAVSTLAV 390 (538)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~-----~~----~~~~h~~~v~~l~~ 390 (538)
++...... .+.....|.. ... ..+++..+ .+|+++|.|+++++|++...+. +. +...|...|+|+++
T Consensus 394 ~~~~~~~~~~~a~~~gH~~-svg-ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTN-SVG-AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred ecCCcchhhhhhhhccccc-ccc-eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 95433322 2222233322 222 23344433 3999999999999999976221 11 33579999999999
Q ss_pred e--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccceeeeccccce
Q 009274 391 C--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGS 466 (538)
Q Consensus 391 ~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~ 466 (538)
+ +.++++||.|++.++|++.......++.+|..+... +.|+++.+.+++++.|++|+||.+ ..+++++.+|...
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~--V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a 549 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC--VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA 549 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCccceEE--EEeccccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence 9 559999999999999999999999999998765443 699999999999999999999985 4689999999999
Q ss_pred EEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e-CCEEEEEECCCeEEEEEc
Q 009274 467 VFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W-QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 467 v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~sg~~dg~v~vw~~ 536 (538)
|..+.| +|..|++++.||.+++|+++++++...... |...+.++.. + ...+++|+.||.|.+|+=
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-----H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-----HNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-----ccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 999998 999999999999999999999988765543 2333444333 3 446888999999999973
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-29 Score=225.49 Aligned_cols=283 Identities=18% Similarity=0.231 Sum_probs=225.9
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
.+..|..|+++|.+++.+ .++++||+.|..-.+|++.++.....+.+|+..|+++.|+. ++.++++|+.+|.|+||+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEE
Confidence 457799999999999998 89999999999999999999999999999999999999988 556889999999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 399 (538)
..++.....+.... .-..-++++|.+..|+.|+.||.+.+|.+.++...+.+.||..++++=.|. ++.++++.
T Consensus 135 ~stg~~~~~~~~e~-----~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEV-----EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeeccc-----CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence 98876554443111 111234778888899999999999999999988899999999999999998 66999999
Q ss_pred cCCcEEEEECCCCceeEEEecCC-------------------------------CCceEEE-------------------
Q 009274 400 RDGTIRLWSLSDHSLLTVLEEDS-------------------------------SGAVSSV------------------- 429 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~~~~~~------------------- 429 (538)
.||+|++||..+++++..+.... .+.+..+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 99999999999999888776210 0000000
Q ss_pred --EEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeeccccceEEEEEeCC-CEEEEEeCCCeEEEEecCCCeeEeeeecCCc
Q 009274 430 --LSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFLEG-KWLFTGGWDKTVSVQELAGDEFEEDVIPTGA 505 (538)
Q Consensus 430 --~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 505 (538)
+.++..=.+.|+|+-||+|.|||+.. ..+..-.|...|..+.|.+ .+|++++.||.|+.||.+++.+...+..
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G--- 366 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG--- 366 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec---
Confidence 01111223578889999999999654 4555566899999999954 8999999999999999999998766553
Q ss_pred ccCCCceEEE-EEeCC-EEEEEECCCeEEEEEcC
Q 009274 506 IPCGSVITAL-LYWQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 506 ~~~~~~~~~~-~~~~~-~l~sg~~dg~v~vw~~~ 537 (538)
|...+..+ ..++. +++++|.|++.+||+..
T Consensus 367 --H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 --HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 22234443 34444 57889999999999875
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=253.75 Aligned_cols=283 Identities=23% Similarity=0.404 Sum_probs=227.2
Q ss_pred EEeecC-CCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 246 KDLQGH-RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 246 ~~l~~h-~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
..+.+| ...|+|+.|+ |+.+++++.|+.+++|+..+.+ ....+.+|...|.+++|+|++. ++++++.|++|++|
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIW 230 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEecCCceEEEe
Confidence 345454 7899999999 9999999999999999998777 7788889999999999999655 88999999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (538)
|+.. ....++.+..|.... ..++|+++++.+++|+.|++|++||+++++++..+.+|.+.|++++|+ +++++++
T Consensus 231 d~~~--~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 231 DLKD--DGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred eccC--CCeEEEEecCCCCce--EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9932 223445555555433 467899999999999999999999999999999999999999999999 6699999
Q ss_pred ecCCcEEEEECCCCc--eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEE---
Q 009274 399 SRDGTIRLWSLSDHS--LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVF--- 471 (538)
Q Consensus 399 s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~--- 471 (538)
+.|+.|++||+.++. +...+..+........+.|+|++.++++++.|+.+++||+. .....+.+|...+.++.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 999999999999999 45666555433134557999999999999999999999965 46778888877654441
Q ss_pred --eCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe--CCEEEEEE--CCCeEEEEEcC
Q 009274 472 --LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGC--ADRTVKVYYYG 537 (538)
Q Consensus 472 --~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~--~dg~v~vw~~~ 537 (538)
..+.++++|+.|+.|++||+.++.......... ...+..+.++ .+.+++++ .|+.+++|...
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 289999999999999999999866544333221 2334444443 44466665 79999999864
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=256.26 Aligned_cols=272 Identities=25% Similarity=0.372 Sum_probs=236.1
Q ss_pred CCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEE-EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHT-FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 251 h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
|...+.+..++++++++++.|++|++||..++..+.. +.+|.+.|.++++.. ++.++++|+.|.++++||..++.+..
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEE
Confidence 6778899999999999999999999999999999888 999999999999965 78899999999999999998887665
Q ss_pred ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEEC
Q 009274 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSL 409 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~ 409 (538)
.+.. +...+.++...+.++++|+.|.+|++|++.++..+..+.+|.++|+++..+++++++|+.|++|++||+
T Consensus 286 ~l~g-------h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 286 SLQG-------HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EecC-------CCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEh
Confidence 5553 334577888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEeCCCEEEEEeCCCeE
Q 009274 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTV 486 (538)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v 486 (538)
.+++++..+.+| ...+.+ +.+... ..+++|+.|++|++||.. +++..+.+|..-+..+.+.++.|++++.|++|
T Consensus 359 ~~~~cl~sl~gH-~~~V~s-l~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 359 RTGKCLKSLSGH-TGRVYS-LIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTI 435 (537)
T ss_pred hhceeeeeecCC-cceEEE-EEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccE
Confidence 999999999985 444443 344433 899999999999999954 46889999999999999999999999999999
Q ss_pred EEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 487 SVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 487 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++||.++++........ +...+.++...+..+++++.||.+++||+.
T Consensus 436 k~WD~~~~~~~~~~~~~----~~~~v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGR----HVGGVSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred EEeecccCceeeeeccC----CcccEEEeecCcceEEEEecCCeeEEEecc
Confidence 99999999887666543 223445555546779999999999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=235.56 Aligned_cols=277 Identities=29% Similarity=0.456 Sum_probs=223.4
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+++|.++|++++|+ ++++++++.||.|++|++.+++....+..|...+..+.|++++ .++++++.||.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcC
Confidence 4577999999999999 6999999999999999999998888999999999999999865 678899999999999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC--CEEEEEecC
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRD 401 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d 401 (538)
+.+....+. .+.. ......+.++++++++++.|+.|++||+++++....+..|...+.+++|++ .++++++.|
T Consensus 82 ~~~~~~~~~---~~~~--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 82 TGECVRTLT---GHTS--YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cccceEEEe---ccCC--cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 653333222 2221 223446667777888888899999999999999999989999999999993 477777779
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEE
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWL 477 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l 477 (538)
+.|++||+++++....+..+. ..+. .+.++|+++.+++++.|+.+++||.. +....+..|...+.++.+ ++.++
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHT-GEVN-SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred CcEEEEEccccccceeEecCc-cccc-eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 999999999888888877543 2333 37899999999999999999999965 566677788889999987 56788
Q ss_pred EEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-C-CEEEEEECCCeEEEEE
Q 009274 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-Q-GKLFVGCADRTVKVYY 535 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~sg~~dg~v~vw~ 535 (538)
++++.||.|++||+.+++....... +...+..+.+. + ..+++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSG-----HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccc-----cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8888899999999997765544431 23345555554 4 5688999999999996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=230.64 Aligned_cols=269 Identities=19% Similarity=0.289 Sum_probs=228.9
Q ss_pred CCCCCCccceeeeeccCcceeEEeecCCeEEEEEe--------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc
Q 009274 214 AENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL--------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS 283 (538)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l--------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~ 283 (538)
...++...+.......++..++++..+|.+++|+. ..|+++|.++.|+ |++|++++.|+++.+||..+++
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 44455677889999999999999999999999985 4599999999999 9999999999999999999999
Q ss_pred eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 284 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
..+.+.-|+.+-.++.|-.+ .-|++++.|+.|+|+.+..... ...+..|.. ....+.+.|.+.+|++++.|++
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P---~~t~~GH~g--~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRP---VKTFIGHHG--EVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred EEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCc---ceeeecccC--ceEEEEECCCCceEEEecCCCe
Confidence 99999999998889999753 4579999999999999875443 444444433 2224456666899999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeEEEEEeC-----------CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 009274 364 IKAWSLLDGTLSCTMSGHKSAVSTLAVCN-----------GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (538)
Q Consensus 364 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (538)
++||..........+.+|...|+.+.|++ ..+++++.|++|++||+..+.+++.+..|.. ++.. ++|
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVys-vaf 460 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYS-VAF 460 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEE-EEe
Confidence 99999999999999999999999999981 2899999999999999999999999977644 3444 799
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 433 TAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 433 ~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+|+|+++++|+.||.|.+|+++ +..+.+.+. +.|..++| +|..|..+-.|+.+++.|++
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999954 566666654 45888888 88999999999999999875
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=230.19 Aligned_cols=283 Identities=18% Similarity=0.247 Sum_probs=221.8
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe---cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK---GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
++..|..-|.|+.|+ |.+++|++.||+|.+||-.+++.+..+. +|.+.|.+++|+|++. .+++++.|.+++|||
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWD 263 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEE
Confidence 367899999999999 9999999999999999999999999998 8999999999999665 569999999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 399 (538)
+.+.+....+.. .....- ..+..-+.+..|++.+.+|+|.+++.....++..+.+|...|+++..+ +.+|++|+
T Consensus 264 Vs~~slv~t~~~---~~~v~d-qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPM---GSTVED-QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeec---CCchhc-eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec
Confidence 998754433332 222111 122333447899999999999999999999999999999999999999 55999999
Q ss_pred cCCcEEEEECCCCceeE-----------EEecCC------------------------------------------C---
Q 009274 400 RDGTIRLWSLSDHSLLT-----------VLEEDS------------------------------------------S--- 423 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~-----------~~~~~~------------------------------------------~--- 423 (538)
.||.|.-||..++..-+ .+.... .
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 99999999987543210 000000 0
Q ss_pred -----------------------CceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc----ceeeeccccceEEEEEe--CC
Q 009274 424 -----------------------GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK----FMKSMQTHKGSVFAVFL--EG 474 (538)
Q Consensus 424 -----------------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~h~~~v~~~~~--~~ 474 (538)
+....+++++|++..+++|+.|+.+++|.+.. .......|.++|+++++ |+
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 00112367889999999999999999998543 34456779999999976 99
Q ss_pred CEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCE-EEEEECCCeEEEEEcCC
Q 009274 475 KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGK-LFVGCADRTVKVYYYGK 538 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-l~sg~~dg~v~vw~~~~ 538 (538)
.+|++|...+.+.+||+.+.+.....-. + |.+.+.+++|+ ++. +++|+-|-.|.||++++
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~---F-HtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNRWA---F-HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecceee---e-eeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 9999999999999999998876322211 1 44456666664 544 77899999999999864
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=242.63 Aligned_cols=267 Identities=23% Similarity=0.361 Sum_probs=211.3
Q ss_pred cceeeeeccCcceeEEeecC-CeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 221 DIDQARAAGGVKDLVNGLSK-GNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
.+..+.+...+.-++.+.+. |.+.+|+ .+||...++|++++ |++++||+.||.|+|||..++-+..+|
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 45566666666666666554 5556665 46899999999999 889999999999999999999999999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC-cEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-TIKAW 367 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~i~iw 367 (538)
..|+..|+.+.|+. .++.+++++.||+|+.||+....+- +.+..... ....++++.|.|..+++|+.|. .|++|
T Consensus 389 teHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~p-~QfscvavD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPEP-IQFSCVAVDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred ccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccccee---eeecCCCc-eeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence 99999999999987 5567799999999999999865443 33333333 2234567778899999998876 69999
Q ss_pred ECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEeC
Q 009274 368 SLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE 444 (538)
Q Consensus 368 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (538)
++.+|+.+-.+.||.++|.+++|+ ++.|+++|.|.+|++||+-.. ..+.++...+. +.. ++|.|+|+.+++++.
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd--vl~-vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD--VLA-VSFRPDGKELAVATL 540 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc--eeE-EEEcCCCCeEEEEEe
Confidence 999999999999999999999998 779999999999999999654 34455554322 233 699999999999999
Q ss_pred CCcEEEEeCCcceee--ecc--------------------ccceEEEEE--eCCCEEEEEeCCCeEEEEecCCCe
Q 009274 445 SGSIKVWRNDKFMKS--MQT--------------------HKGSVFAVF--LEGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 445 dg~i~iwd~~~~~~~--~~~--------------------h~~~v~~~~--~~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
||.|.+||.....+. +.+ .....+.++ +||..+++||..+.|.+||+.++-
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 999999996532221 111 113445555 499999999999999999987654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=206.96 Aligned_cols=259 Identities=18% Similarity=0.323 Sum_probs=204.0
Q ss_pred eeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCcCeEEEE
Q 009274 233 DLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVV 299 (538)
Q Consensus 233 ~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~ 299 (538)
.+++++.+..+++|. ++-..+.|+.+... ++.||+++ ...||+||+++++ ++.++.+|+..|+++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 455666666666665 55566789999998 66677766 5589999998765 5899999999999999
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe-
Q 009274 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM- 378 (538)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~- 378 (538)
|.. +++.+++|+.||+++|||++.......+... .......++|+...|++|..+|.|++||+.+..+...+
T Consensus 91 F~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~------spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 91 FQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN------SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred Eee-cCeEEEecCCCceEEEEeccCcccchhccCC------CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 976 5668899999999999999975443333221 12224567788889999999999999999988766655
Q ss_pred cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCc------eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEE
Q 009274 379 SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (538)
Q Consensus 379 ~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 450 (538)
.....+|.++... +.+++.+...|+.++|++-+.. ++.+++.+ .+.+.. +.+||++++|++++.|.+++|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-~~~il~-C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH-NGHILR-CLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc-cceEEE-EEECCCCcEEEeecCCceEEE
Confidence 3345678888877 5699999999999999997654 34445544 455555 589999999999999999999
Q ss_pred EeCCc---ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 451 WRNDK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 451 wd~~~---~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
|++.. ....+++|+.++..+.| ||.||+||+.|+.+++||++.++......
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 99765 45677899999999888 99999999999999999999988655443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=251.47 Aligned_cols=278 Identities=20% Similarity=0.313 Sum_probs=228.3
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
|+.-+..|.+++|+ ..+++++-..|.|++||..-+.++..|..|.++|..++|+| .+.+|+||+.|-.|++|+..+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc
Confidence 55567789999999 88999999999999999999999999999999999999998 5668999999999999999876
Q ss_pred CCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCc
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGT 403 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 403 (538)
++...+.. |. .+...+.|++.-.+++++|+|.+|+||+..+++++..+.||...|.|..|+ .+.++|+|-|.+
T Consensus 84 rclftL~G---Hl--DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 84 RCLFTLLG---HL--DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred eehhhhcc---cc--ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 65544433 33 233456778778899999999999999999999999999999999999999 569999999999
Q ss_pred EEEEECCCCc-----------------------------eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 009274 404 IRLWSLSDHS-----------------------------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 404 i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 454 (538)
|++||+..-+ ..+.+.+|..+ +.. .+|+|.-.++++|+.|+.|++|...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-VNw-aAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-VNW-AAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-cce-EEecCCcceEEecCCcceeeEEEec
Confidence 9999995311 01223344333 333 5899999999999999999999855
Q ss_pred c----ceeeeccccceEEEEEeC--CCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECC
Q 009274 455 K----FMKSMQTHKGSVFAVFLE--GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCAD 528 (538)
Q Consensus 455 ~----~~~~~~~h~~~v~~~~~~--~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 528 (538)
+ .+.+..+|.+.|.++-|+ .+++++.|.|++|+|||+...+....+... +.........|...|++++.|
T Consensus 237 etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre----ndRFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 237 ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE----NDRFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc----CCeEEEEEecCCcceeeeecC
Confidence 3 455778999999999884 489999999999999999988776666544 333444455567778998889
Q ss_pred CeEEEEEcC
Q 009274 529 RTVKVYYYG 537 (538)
Q Consensus 529 g~v~vw~~~ 537 (538)
+-+.||++.
T Consensus 313 sGm~VFkle 321 (1202)
T KOG0292|consen 313 SGMIVFKLE 321 (1202)
T ss_pred CceEEEEEc
Confidence 889998875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=238.58 Aligned_cols=259 Identities=19% Similarity=0.299 Sum_probs=215.8
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEEeec---------CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKDLQG---------HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~---------h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 290 (538)
+-++.+.+...-++.+..+|.+.+|+.+. ..-||++..|- .+++++|+.|..|+||++++++.++.|+.
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA 95 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA 95 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec
Confidence 55677778888899999999999998654 34577777776 89999999999999999999999999999
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEEC
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~ 369 (538)
|.+.|.+++.+|. ..++++++.|-+|++||++.. -...+.+.+|. ++....++.| |.+.+++++-|++|++|.+
T Consensus 96 H~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~--HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 96 HSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENE--WACEQTFEGHE--HYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred cccceeeeeecCC-CCeEEecCCccEEEEeeccCc--eeeeeEEcCcc--eEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 9999999999995 457799999999999999843 23444555554 4444556776 4569999999999999999
Q ss_pred CCCceeEEecCCCCCeEEEEEe-CC---EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC
Q 009274 370 LDGTLSCTMSGHKSAVSTLAVC-NG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (538)
Q Consensus 370 ~~~~~~~~~~~h~~~v~~l~~~-~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 445 (538)
.+..+..++.+|...|+|+.+- ++ +|++|+.|.++++||.++.++++++.+|... +.. .+|+|.-..+++|++|
T Consensus 171 gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-vs~-v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 171 GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-VSF-VFFHPELPIIISGSED 248 (794)
T ss_pred CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-ceE-EEecCCCcEEEEecCC
Confidence 9999999999999999999998 33 9999999999999999999999999988543 333 6899999999999999
Q ss_pred CcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCeEE
Q 009274 446 GSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVS 487 (538)
Q Consensus 446 g~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~ 487 (538)
|+++||+..+ ...++...-..++|+.. .++.++.|..+|.|.
T Consensus 249 GTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 249 GTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred ccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999654 45556666678888874 566677777777664
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=249.64 Aligned_cols=239 Identities=29% Similarity=0.422 Sum_probs=210.7
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
+.||.+.|+++++. ++++++|+.|.++++||..+|++..++.+|.+.|.++.. .+.++++|+.|.+|++|++.++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEEeccCc
Confidence 88999999999999 999999999999999999999999999999999999987 5567889999999999999976
Q ss_pred CCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC-CEEEEEecCCcE
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN-GVLYSGSRDGTI 404 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i 404 (538)
.....+.. +...+.++..++.++++|+.|++|++||+.+++++.++.+|...|+++.+.+ +.+++|+.|++|
T Consensus 322 ~~l~l~~~-------h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 322 ACLNLLRG-------HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTI 394 (537)
T ss_pred ceEEEecc-------ccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccce
Confidence 55444433 3335778888899999999999999999999999999999999999999997 999999999999
Q ss_pred EEEECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeecc-ccceEEEEEeCCCEEEEE
Q 009274 405 RLWSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQT-HKGSVFAVFLEGKWLFTG 480 (538)
Q Consensus 405 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~-h~~~v~~~~~~~~~l~sg 480 (538)
++||+++. +++.++..+.. .+ ..+...+++|++++.|++|++|| ..++.+.+.+ |...|.++......++++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~-~v---~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s 470 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTS-LV---SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCS 470 (537)
T ss_pred EeecCCchhhhhhhhcCCcc-cc---cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEE
Confidence 99999999 88888887643 22 34556688999999999999998 4568888888 778999998887889999
Q ss_pred eCCCeEEEEecCCCeeEeee
Q 009274 481 GWDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 481 s~dg~v~iwd~~~~~~~~~~ 500 (538)
+.||.+++||+++++.....
T Consensus 471 ~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 471 SDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecCCeeEEEecccCchhhhh
Confidence 99999999999998866544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=225.81 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=220.0
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC---ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
..+..|.+.|+-+.|+ |++|||++.|.+..+|++..- +..+++.+|..+|..+.|+|++. ++++|+.|..+.+|
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLW 296 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeec
Confidence 3478999999999999 999999999999999987543 45788999999999999999655 66888888889999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCC-CCeEEEEEe--CCEEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-SAVSTLAVC--NGVLYS 397 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s 397 (538)
|..++........- .. .....+++.|||..+++|+.|+++..||+. |+.+...++-. ..|.+++.. +.++++
T Consensus 297 Dv~tgd~~~~y~~~---~~-~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSG---LG-FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred cCCcchhhhhcccC---cC-CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEE
Confidence 99988655444332 12 223456899999999999999999999985 44455555433 468899887 668888
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEE--Ee-
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAV--FL- 472 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~--~~- 472 (538)
.+.|..|++++..+......+..++ .+ ...+++.+++++++.-.+..+++||..+ .++.+.+|...-.-+ +|
T Consensus 372 v~~d~~i~l~~~e~~~dr~lise~~--~i-ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLISEEQ--PI-TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EecccceeeechhhhhhhccccccC--ce-eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 9999999999998766655554432 23 3479999999999999999999999764 567888887654333 44
Q ss_pred --CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeC---CEEEEEECCCeEEEEEcC
Q 009274 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---GKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 --~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~sg~~dg~v~vw~~~ 537 (538)
+..++++||+|+.|+||+..++++...+.. |...++++.|++ ..+++|++||+|+||..+
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-----Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-----HSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecC-----CcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 678999999999999999999987665543 345677887762 348899999999999875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=261.98 Aligned_cols=265 Identities=20% Similarity=0.307 Sum_probs=214.9
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEEee----------------cCCCcEEEEEEc---CCEEEEEeCCCcEEEEeC
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDLQ----------------GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSL 279 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~----------------~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~ 279 (538)
...+..+.+.+++..++++..++.+++|++. .+...|.+++|+ +.+|++++.||+|++||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 4457778889999999999999999999853 134578899997 689999999999999999
Q ss_pred CCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEE-eecCCEEEEe
Q 009274 280 KDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL-TTSGRYLYTG 358 (538)
Q Consensus 280 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg 358 (538)
.+++.+..+.+|.+.|++++|+|.++.+|++|+.||+|++||+.++.....+. .+. .. ....+ ++++.++++|
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~~~--~v-~~v~~~~~~g~~latg 636 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---TKA--NI-CCVQFPSESGRSLAFG 636 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---cCC--Ce-EEEEEeCCCCCEEEEE
Confidence 99999999999999999999998778899999999999999998764433222 111 11 22344 4568899999
Q ss_pred eCCCcEEEEECCCCc-eeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCC------ceeEEEecCCCCceEEEE
Q 009274 359 SGDRTIKAWSLLDGT-LSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDH------SLLTVLEEDSSGAVSSVL 430 (538)
Q Consensus 359 ~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~ 430 (538)
+.||.|++||+++.+ .+..+.+|...|.++.|. ++++++++.|++|++||++.+ ..+..+..+. .. ...+
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~-~~-i~~v 714 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT-NV-KNFV 714 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC-CC-eeEE
Confidence 999999999998765 567788999999999998 679999999999999999753 4566666553 33 3346
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCcc--eee-------------eccccceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 431 SLTAVQHTLVVSHESGSIKVWRNDKF--MKS-------------MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 431 ~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~-------------~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
++++++.+|++|+.|+.|++|+.... ... ...|...|.+++| ++..|++|+.||.|++|++
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 89999999999999999999995422 111 1235567888887 8889999999999999986
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=237.80 Aligned_cols=274 Identities=21% Similarity=0.325 Sum_probs=225.4
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
++..|++.|.|+.++ ..+++++-.+|.|.|||.++...++.+.-..-+|.+..|.+ ..+.+++|+.|..|++|+.++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEeccc
Confidence 356689999999999 89999999999999999999999999999999999999987 566889999999999999998
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC-CceeEEecCCCCCeEEEEEe---CCEEEEEec
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC---NGVLYSGSR 400 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~ 400 (538)
...... +..|. .+..+.+++|...+++++|+|-+|++||... ..+.+++.||...|.+++|+ ++.++++|-
T Consensus 87 ~ekV~~---FeAH~--DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 87 GEKVKT---FEAHS--DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ceeeEE---eeccc--cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 765444 33343 3445678889889999999999999999975 46888999999999999999 459999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcC--CCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEe--CC
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--VQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL--EG 474 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~--~~ 474 (538)
|++|++|.+.+..+..++.+|.++.. + +.+-+ |..+|++|+.|.++++|| +.++++++.+|...|..+.| .-
T Consensus 162 DrTVKVWslgs~~~nfTl~gHekGVN-~-Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLEGHEKGVN-C-VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred cccEEEEEcCCCCCceeeeccccCcc-e-EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 99999999999999999998866543 3 35543 456999999999999999 45699999999999999988 55
Q ss_pred CEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e-CCEEEEEECCCeEEE
Q 009274 475 KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W-QGKLFVGCADRTVKV 533 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~sg~~dg~v~v 533 (538)
..++|||.||++|||+..+-+....+... .. .+.++.. . ++.++.|.+.|.|.+
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~g----le-RvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYG----LE-RVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcC----Cc-eEEEEeecCCCCeEEEeccCCcEEE
Confidence 68999999999999998887654433322 12 2333332 2 555677777776543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=246.98 Aligned_cols=268 Identities=23% Similarity=0.367 Sum_probs=225.9
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEEe-----------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeC-CCCce
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL-KDFSH 284 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-----------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~-~~~~~ 284 (538)
...+.+..+++++..++....++.+.+|.. .+|...|++++|+ +.++++++.|++|+|||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 344667888899999988888888888876 6899999999999 889999999999999999 66689
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcE
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 364 (538)
++++++|...|++++|+|++ +++++|+.|++|++||+++++... .+..+.. ....++++++++++++++.|+.|
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~--~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVR---KLKGHSD--GISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred EEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEE---eeeccCC--ceEEEEECCCCCEEEEcCCCccE
Confidence 99999999999999999988 899999999999999999854443 3333433 23356899999999999999999
Q ss_pred EEEECCCCc--eeEEecCCCCC--eEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCc-eEEEEEEcCCCC
Q 009274 365 KAWSLLDGT--LSCTMSGHKSA--VSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA-VSSVLSLTAVQH 437 (538)
Q Consensus 365 ~iwd~~~~~--~~~~~~~h~~~--v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 437 (538)
++||+.++. +...+.++... ++++.|+ +.++++++.|+.+++||++.+..+..+..+.... .......++.+.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 999999998 56777776655 9999998 5699999999999999999999999998887652 121234467899
Q ss_pred EEEEEeCCCcEEEEeCC--cceeeeccc-cceEEEEEe--CCCEEEEEe--CCCeEEEEecC
Q 009274 438 TLVVSHESGSIKVWRND--KFMKSMQTH-KGSVFAVFL--EGKWLFTGG--WDKTVSVQELA 492 (538)
Q Consensus 438 ~l~~~~~dg~i~iwd~~--~~~~~~~~h-~~~v~~~~~--~~~~l~sgs--~dg~v~iwd~~ 492 (538)
++++|+.|+.|++||.. ..+..+.+| ...+..+.+ ..+++++++ .|+.+++|...
T Consensus 393 ~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999954 567788899 777777765 788999988 68999999764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=209.94 Aligned_cols=278 Identities=17% Similarity=0.271 Sum_probs=228.4
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE--EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH--TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
..+++|...|.+++|+ |..+++|+.|+++++|+++..+... ..++|.+.|-.++|+|....++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5578999999999999 9999999999999999998765543 35689999999999999999999999999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 399 (538)
++.+++...+...... -...++|+|+++++++.|..|...|.++.+.....+ ....++-++|+ +++++...
T Consensus 94 ~r~~k~~~~i~~~~en------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEeeccCcc------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEec
Confidence 9987765554433222 245899999999999999999999999988777654 45677888888 56777777
Q ss_pred cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCC
Q 009274 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGK 475 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~ 475 (538)
..|+|.|.....-+++..++.|..+ .. ++.|+|+|+++++|+.|-.+.+||..+ +.+.+..+.-+|..++| ||+
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~sn-Ci-cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSN-CI-CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred CCceEEEEeccccccccccccCCcc-eE-EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 7899999999999999999988543 33 379999999999999999999999887 56788889999999998 999
Q ss_pred EEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEE-EEECC---------CeEEEEEcCC
Q 009274 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLF-VGCAD---------RTVKVYYYGK 538 (538)
Q Consensus 476 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~-sg~~d---------g~v~vw~~~~ 538 (538)
+|++||+|..|-|=+++++........ ......++|++. .|+ -+++| |.|++|-+++
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~~------~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIPC------EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEeec------cCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999999999999999987666554 334555556544 343 34432 6888887653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=205.09 Aligned_cols=260 Identities=23% Similarity=0.305 Sum_probs=206.8
Q ss_pred ceeeeeccC-cceeEEeecCCeEEEEEee-------------cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC--CCc
Q 009274 222 IDQARAAGG-VKDLVNGLSKGNVKFKDLQ-------------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFS 283 (538)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~~~~~i~~l~-------------~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~--~~~ 283 (538)
+......++ +..+++++.+..+++|... +|+..|++++|+ |++|++||.|.++.||.-. +.+
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE 96 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee
Confidence 445555555 5667888888888888765 599999999997 9999999999999999865 347
Q ss_pred eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 284 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
++.++++|...|.+++|++ ++.+|++++.|..|-||.+...........+..|... ...+.++|...+|++++.|.+
T Consensus 97 cv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--VK~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--VKHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred EEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--ccEEEEcCCcceeEEeccCCe
Confidence 8899999999999999988 5568899999999999999866655555555554431 224577888899999999999
Q ss_pred EEEEECC---CCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 009274 364 IKAWSLL---DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 364 i~iwd~~---~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
|++|+-. .-++++++.+|.+.|.+++|+ +..+++++.|++++||-..+ .+...+...... +.|. ...
T Consensus 174 Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~-v~W~--~~~ 245 (312)
T KOG0645|consen 174 IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYD-VPWD--NGV 245 (312)
T ss_pred EEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEe-eeec--ccc
Confidence 9999865 346899999999999999999 56999999999999998662 233333444444 4555 568
Q ss_pred EEEEeCCCcEEEEeCC----cc-----eeeeccccceEEEEEeC---CCEEEEEeCCCeEEEEecC
Q 009274 439 LVVSHESGSIKVWRND----KF-----MKSMQTHKGSVFAVFLE---GKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 439 l~~~~~dg~i~iwd~~----~~-----~~~~~~h~~~v~~~~~~---~~~l~sgs~dg~v~iwd~~ 492 (538)
|++++.|+.|++|... .+ ...-..|...|+++.|+ .+.|++|+.||.|++|.+.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999999999622 12 22335688899999983 5799999999999999874
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=226.37 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=215.8
Q ss_pred EEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 245 FKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
+-.|.||.+.|.|++=+ -..++||+.||.|+|||+....+..+++.|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeee
Confidence 34579999999999998 35799999999999999999999999999999999999964 4678999999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEE
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSG 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~ 398 (538)
++.+ +...+...... . -...+..++.++|++. .|.|||.+...++..+.-..+.|.++.|+ .+.|++|
T Consensus 136 ~~~~----p~~tilg~s~~--~-gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP----PLHTILGKSVY--L-GIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC----cceeeeccccc--c-ccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 8753 22222222110 0 1122334567888876 59999999999999998888899999999 4588999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe--C
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL--E 473 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~--~ 473 (538)
+.|+.|.+||++++++++.+..... ...++|+|.+-.+++|++|..++.||++ .++....+|.+.|.+++| .
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred ccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence 9999999999999999887765433 3337999988889999999999999965 567777888899999876 8
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE-EEEEECCCeEEEEEc
Q 009274 474 GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 474 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~sg~~dg~v~vw~~ 536 (538)
|+-+++||.|.+|+||.++.+..... .+... ..-+.++.| .|.+ +++||+|+.|++|+-
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdi-YhtkR---Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDI-YHTKR---MQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cchhccccccceEEEeecCCCcchhh-hhHhh---hheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999999999987754322 22222 123444444 4655 788999999999974
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=215.52 Aligned_cols=306 Identities=17% Similarity=0.223 Sum_probs=244.6
Q ss_pred CCccceeeeeccCcceeEEeecCCeEEEEEee-----------cCCCcEEEEEEc--CCEEEEEeC--CCcEEEEeCCCC
Q 009274 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ-----------GHRDCVTGLAVG--GGFLFSSSF--DKSIHVWSLKDF 282 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-----------~h~~~V~~l~~~--~~~l~s~s~--dg~i~iwd~~~~ 282 (538)
.+..+..+.+++.+..++++...|++++|.-. --.++|..|+|+ +++|++.+. ++..+++-.++|
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 35567789999999999999999999999832 346899999999 777776654 333344444578
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee-eecccCCceeeeEEEEeecCCEEEEeeCC
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGD 361 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 361 (538)
..+..+.+|...|+++.|-|.....+++|+.|++|.+|+-.. -.++ .+..|. ....+..++|||..+++++.|
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk~s~r~Hs--kFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFKSSFREHS--KFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeeeecccccc--cceeeEEECCCCCeEEEecCC
Confidence 889999999999999999999999999999999999997321 1111 112222 344567899999999999999
Q ss_pred CcEEEEECCCCceeEEec---CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCC--CceEEEEEEcC
Q 009274 362 RTIKAWSLLDGTLSCTMS---GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS--GAVSSVLSLTA 434 (538)
Q Consensus 362 g~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~ 434 (538)
|++.+||-.+++.+..+. +|++.|.+++|+ ...+++++.|.+++|||+.+.++++++..... .....++ |.
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-Wq- 289 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-WQ- 289 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE-Ee-
Confidence 999999999999999997 899999999999 44999999999999999999999999876544 2333332 33
Q ss_pred CCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCC
Q 009274 435 VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGS 510 (538)
Q Consensus 435 ~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 510 (538)
...|++.+.+|.|.+++.. ...+.+.+|...|+++.. ++++|++|+.||.|.-|+..++......... +..
T Consensus 290 -kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~----h~n 364 (603)
T KOG0318|consen 290 -KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG----HTN 364 (603)
T ss_pred -CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc----ccc
Confidence 6689999999999999843 478899999999999875 8999999999999999999988654332111 444
Q ss_pred ceEEEEEe-CCEEEEEECCCeEEEEEc
Q 009274 511 VITALLYW-QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 511 ~~~~~~~~-~~~l~sg~~dg~v~vw~~ 536 (538)
.+..+... .+.+++.+.|.++++.++
T Consensus 365 qI~~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 365 QIKGMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred eEEEEeecCCCcEEEEecCCeEEEEec
Confidence 55555555 488999999999999876
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=204.90 Aligned_cols=267 Identities=17% Similarity=0.264 Sum_probs=205.8
Q ss_pred EEEEEc---CCEEEEEe-------CCCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 256 TGLAVG---GGFLFSSS-------FDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 256 ~~l~~~---~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
.++.|+ .++|+.+. ..|++.|.++...+-+..+. .-.+.+..++|++..+..+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 456666 45544442 36889999987555554443 2467899999999999999999999999999954
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeec---CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYS 397 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s 397 (538)
....++..+..|... +.++.++ .+.++++|.|++|++||....+.+.++.+|..-|+..+|+ ++++++
T Consensus 92 --~~s~Pi~~~kEH~~E----V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 92 --MPSKPIHKFKEHKRE----VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred --CCCcchhHHHhhhhh----eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 344566666665542 4455443 4588888999999999999999999999999999999999 779999
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEEc-CCCCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe-
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT-AVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL- 472 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~- 472 (538)
+|.|+++++||++.......+..|. ..+.+ +.|+ .+.+.+++|+.|+.|+.||++ .++..+.+|.-.|..+.+
T Consensus 166 ~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~-cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGKFMSIEAHN-SEILC-CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred ccCCceEEEEEecCCCceeEEEecc-ceeEe-ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 9999999999998755444466654 33444 3454 577899999999999999954 578889999999999987
Q ss_pred --CCCEEEEEeCCCeEEEEecCCCe-eEeeeecCCcccCCCceEEEEEe---CCEEEEEECCCeEEEEE
Q 009274 473 --EGKWLFTGGWDKTVSVQELAGDE-FEEDVIPTGAIPCGSVITALLYW---QGKLFVGCADRTVKVYY 535 (538)
Q Consensus 473 --~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~v~vw~ 535 (538)
....|++++.|-+++|||...+. ......+ |...+..+.++ .+++++++.|+.++||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-----HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDH-----HTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhc-----cceEEeccccccccCceeeecccccceeeec
Confidence 56789999999999999998543 2222222 33344444443 67899999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=220.06 Aligned_cols=269 Identities=15% Similarity=0.271 Sum_probs=222.7
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEE------------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCce
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH 284 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~ 284 (538)
...+.-..++.+++.+++++.+....+|. +.||..+|..+.|+ .+++++|+.|..+++||+.+|..
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~ 303 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL 303 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence 44688899999999999999888777665 67999999999999 89999999999999999999999
Q ss_pred EEEEec-CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 285 VHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 285 ~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
...+.. |...+.+++|.|++.. +++|+.|+++..||++... ...|..... .....+++++||+++++.+.|..
T Consensus 304 ~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~-~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 304 RHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI----LGNWEGVRD-PKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred hhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch----hhccccccc-ceeEEEEEcCCCcEEEEEecccc
Confidence 888753 4688999999997664 6999999999999997432 333333332 22335688899999999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEE
Q 009274 364 IKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLV 440 (538)
Q Consensus 364 i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 440 (538)
|++++..+........ ...+|+++..+ +.++++.-.+..+++||+...+.+..+.++..+...-..+|.. +..+++
T Consensus 378 i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 378 IRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred eeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 9999987765554333 45789999999 4588888899999999999988898888887666554445553 458999
Q ss_pred EEeCCCcEEEEe--CCcceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCC
Q 009274 441 VSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 441 ~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
+|++|+.|+||+ .++++..+.+|...|+|++| +..++|++|.||+||||.....
T Consensus 457 SGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999 56799999999999999998 6779999999999999987643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=199.43 Aligned_cols=261 Identities=18% Similarity=0.237 Sum_probs=213.9
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 289 (538)
.+..+.+..+++..++..++..+++|+ +.||...|..++.+ +..+++|+.|+.|.+||+++|+.++.+.
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence 467788888899999999888888886 67999999999887 8899999999999999999999999999
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
+|.+.|+.++|+. ....+++|+.|.++++||.++... .+++.+....+ .+.++...+..+++|+.||+++.||+
T Consensus 99 gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D----~V~Si~v~~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 99 GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKD----GVSSIDVAEHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred cccceeeEEEecC-cceEEEeccccceeEEEEcccCCC-CccchhhhhcC----ceeEEEecccEEEeeccCCcEEEEEe
Confidence 9999999999965 667889999999999999986543 34444433332 46677888999999999999999999
Q ss_pred CCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCc
Q 009274 370 LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS 447 (538)
Q Consensus 370 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 447 (538)
+.|+...... ..+|+|+.|+ ++..+.++.|+++++.|-.+|+.+..+++|.......-++++.....+++|++||.
T Consensus 173 R~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 173 RKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred ecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce
Confidence 9998766655 4589999999 66999999999999999999999999998877665555678888899999999999
Q ss_pred EEEEeCC--cceeeeccccce-EEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 448 IKVWRND--KFMKSMQTHKGS-VFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 448 i~iwd~~--~~~~~~~~h~~~-v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
+++||+- +.+..+..|... +.++++ .-..|+++. ++.+.+|-
T Consensus 251 Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 251 VYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 9999954 456666667666 667765 333444443 34455664
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=226.51 Aligned_cols=263 Identities=18% Similarity=0.273 Sum_probs=209.3
Q ss_pred ceeeeecc-CcceeEEeecCCeEEEEE----------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 222 IDQARAAG-GVKDLVNGLSKGNVKFKD----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~~~~~~~i~~----------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
+..+.+-+ ....+++++.++.+.+|+ +.||..+|.+++|+ |..++|+|.|+.+++||+++|+++..+
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF 296 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE
Confidence 44444444 566677888888888887 56899999999999 999999999999999999999999988
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
. -...++|+.|.|++.+++++|+.|+.|+.||+++++..+.. ..+.. .. .-..|-++++++++.++|+++++|+
T Consensus 297 ~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---d~hLg-~i-~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 297 H-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---DRHLG-AI-LDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred e-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---Hhhhh-he-eeeEEccCCceEeeeccCccEEEEE
Confidence 7 34577999999999999999999999999999987633322 22221 11 1235667899999999999999999
Q ss_pred CCCCceeEEec-CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCC---ceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 009274 369 LLDGTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH---SLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 369 ~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
.+..-++.... .+.-...|+..+ +++++.-+.|+.|.++.+... .....+++|......+-+.|||||.+|++|
T Consensus 371 ~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 371 NRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred cCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 98876655432 122234455555 679999999999999987543 233455666555555668999999999999
Q ss_pred eCCCcEEEEeCC--cceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEe
Q 009274 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd 490 (538)
+.||.+.+||.+ +.+..++.|.+++..+.| ....++|++.||.|++||
T Consensus 451 dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999955 578899999999999988 567899999999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=213.09 Aligned_cols=264 Identities=24% Similarity=0.382 Sum_probs=212.9
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
.-+.++.+.+++..+++++.++.++||++ .||...|..++++ -.|+++++.|+.|+.||++..+.++.+
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y 231 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY 231 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh
Confidence 45778899999999999999999999984 6899999999999 899999999999999999999999999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
.+|-..|.|++.+|.. ..+++|+.|.++++||+++......+. ++.. ....+. +.+-...+++|+.|++|++||
T Consensus 232 hGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~---GH~~-~V~~V~-~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 232 HGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLS---GHTN-PVASVM-CQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred ccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEec---CCCC-cceeEE-eecCCCceEEecCCceEEEee
Confidence 9999999999999854 577999999999999999765544443 3332 222232 233355799999999999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEeCC--EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 369 LLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
++.|+...++..|...|.+++.+++ .+++++.| .|+.|++..+..+..+.++ ... ...++...| .++++|+.+|
T Consensus 306 l~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh-~~i-intl~~nsD-~v~~~G~dng 381 (460)
T KOG0285|consen 306 LRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH-NAI-INTLSVNSD-GVLVSGGDNG 381 (460)
T ss_pred eccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc-cce-eeeeeeccC-ceEEEcCCce
Confidence 9999999999999999999999943 66777766 5999999999998887665 333 333566655 4788999999
Q ss_pred cEEEEeCCc--ceeee---cc-----ccceEEEEEe--CCCEEEEEeCCCeEEEEecCC
Q 009274 447 SIKVWRNDK--FMKSM---QT-----HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 447 ~i~iwd~~~--~~~~~---~~-----h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~ 493 (538)
.+..||.+. ..+.. .. ....|.+.+| .|..|++|..|.+|++|.-..
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 999999553 22221 11 2346777777 688999999999999997654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=210.34 Aligned_cols=254 Identities=23% Similarity=0.357 Sum_probs=199.6
Q ss_pred cceeEEeecCCeEEEEEe--------ecCCCcEEEEEEc-----CCEEEEEeCCCcEEEEeCCCCceE----EEEecCCc
Q 009274 231 VKDLVNGLSKGNVKFKDL--------QGHRDCVTGLAVG-----GGFLFSSSFDKSIHVWSLKDFSHV----HTFKGHDH 293 (538)
Q Consensus 231 ~~~~~~~~~~~~~~i~~l--------~~h~~~V~~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h~~ 293 (538)
...++++..+|..++|++ .||.++|.+++|. ...|+++|.|.++++|.++.++.. +.-++|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 678899999999999884 5799999999886 346999999999999998876543 33459999
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC----------------------CcceeeecccCCceeeeEEEEee-
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG----------------------HEPLKKWNEEKDWRYSGIHALTT- 350 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~- 350 (538)
.|.++...++ +..+++|+.|.+|.+|+..+... ..++....+|.. ++.++-+
T Consensus 195 ~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~----~Vs~V~w~ 269 (423)
T KOG0313|consen 195 SVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE----PVSSVVWS 269 (423)
T ss_pred ceeEEEecCC-CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc----ceeeEEEc
Confidence 9999998774 55779999999999999332110 111222222222 2333333
Q ss_pred cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCc--e-eEEEecCCCCc
Q 009274 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS--L-LTVLEEDSSGA 425 (538)
Q Consensus 351 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~-~~~~~~~~~~~ 425 (538)
+...+++++.|.+|+.||+.++..+.++.+ ...++|+.++ .++|++|+.|..|++||.+++. . .+++.+| .+.
T Consensus 270 d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nw 347 (423)
T KOG0313|consen 270 DATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNW 347 (423)
T ss_pred CCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhh
Confidence 356899999999999999999999988874 5678999998 5699999999999999999864 2 4455555 456
Q ss_pred eEEEEEEcC-CCCEEEEEeCCCcEEEEeCCc---ceeeeccccceEEEEEe-CCCEEEEEeCCCeEEEEecC
Q 009274 426 VSSVLSLTA-VQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 426 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~ 492 (538)
+.. +.|+| +..+|++|+.|+++++||.+. ++..+.+|...|.++.| ++..+++||.|++++++.-.
T Consensus 348 Vss-vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 348 VSS-VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred hhh-eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 665 46666 456789999999999999664 77889999999999999 77799999999999998654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=204.69 Aligned_cols=277 Identities=21% Similarity=0.279 Sum_probs=222.6
Q ss_pred EeecCCCcEEEEEEc-----CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 247 DLQGHRDCVTGLAVG-----GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
...||+.+|-.++|+ |-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|++..... +....++++.|-+-++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhh
Confidence 467999999999998 78899999999999999999999999999999999988754 555678999999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc-eeEEecCCCCCeEEEEEe--CCEEEEE
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT-LSCTMSGHKSAVSTLAVC--NGVLYSG 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (538)
.-++.....+.. .++...++|+.|.++|++|+.+..+++||++..+ +..++.+|.+.|..+.|. ++.++++
T Consensus 88 a~tgdelhsf~h------khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 88 AVTGDELHSFEH------KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhh------hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 988765544432 1444567899999999999999999999998754 567889999999999998 7799999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeecccc-ceEEEEEeCCC
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHK-GSVFAVFLEGK 475 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~-~~v~~~~~~~~ 475 (538)
+.|++||+||.++++.++++...+. +. .+.++++|++|.++. .+.|.+||... +++.++... -.-.++.|+..
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~--Vt-SlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSP--VT-SLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE 237 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCC--Cc-ceeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCc
Confidence 9999999999999999999987543 33 378999999777654 56899999654 444444322 12235667889
Q ss_pred EEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEE-EEEECCCeEEEEEcC
Q 009274 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKL-FVGCADRTVKVYYYG 537 (538)
Q Consensus 476 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~dg~v~vw~~~ 537 (538)
.+++|+.|..++.||..+++...... . .+.+.+.+.-+.|+|.+ ++|+.||+|++|...
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~n-k--gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYN-K--GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecc-c--CCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 99999999999999999988665531 1 12444555556678874 569999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=228.59 Aligned_cols=265 Identities=19% Similarity=0.318 Sum_probs=213.9
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 290 (538)
+-...|.+.-.-++++...|.+++|+ |..|.++|..++|+ +.+++||+.|-.|++|++.+.+++.++.+
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G 91 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG 91 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence 34456667777889999999999998 46899999999999 89999999999999999999999999999
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECC
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~ 370 (538)
|-+.|..+.|++ .-..++|+|.|.+|+||++.+.++...+. +|. ++..+..|+|..+.++++|-|.+|++||+.
T Consensus 92 HlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavlt---GHn--HYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 92 HLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLT---GHN--HYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred ccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEe---cCc--eEEEeeccCCccceEEEecccceEEEEeec
Confidence 999999999988 45578999999999999999876554444 333 556677889989999999999999999984
Q ss_pred CC-----------------------------ceeEEecCCCCCeEEEEEeC--CEEEEEecCCcEEEEECCCCce--eEE
Q 009274 371 DG-----------------------------TLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSL--LTV 417 (538)
Q Consensus 371 ~~-----------------------------~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~--~~~ 417 (538)
.- -..+.+.||...|+-++|++ .+++||+.|+.|++|.+..-+. +.+
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh
Confidence 21 01235679999999999996 6999999999999999976542 444
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEE--EeCCCEEEEEeCCCeEEEEecCC
Q 009274 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~--~~~~~~l~sgs~dg~v~iwd~~~ 493 (538)
..+|. +.+.+ +-|+|..+++++.++|++|++||. ++.+++++...+.-+.+ .|..++++.| .|+-+.+|.++.
T Consensus 246 crgH~-nnVss-vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 246 CRGHY-NNVSS-VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred hhccc-CCcce-EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcc
Confidence 55554 44444 579999999999999999999995 45778886655555554 4567766555 677788888764
Q ss_pred Ce
Q 009274 494 DE 495 (538)
Q Consensus 494 ~~ 495 (538)
..
T Consensus 323 Er 324 (1202)
T KOG0292|consen 323 ER 324 (1202)
T ss_pred cC
Confidence 43
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=225.26 Aligned_cols=273 Identities=26% Similarity=0.426 Sum_probs=220.2
Q ss_pred EEEeecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceE--EEEecCCcCeEE-EEEecCCCCEEEEEcCCCcEEEE
Q 009274 245 FKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHV--HTFKGHDHKVMA-VVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
-..+.||+..|..+++. +..++++|.||++++|+-...+.+ ..+.+|.+.|.. ++|.+.++..+++|+.|.+|.+|
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 45689999999999988 778999999999999997655543 457778888877 88877666678999999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSG 398 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~ 398 (538)
..........++ .|. ..+++++.... .+++||+|.++++|- .+++...+.+|+..|++++.- .+.++||
T Consensus 87 ~~~~~~P~~~Lk---gH~----snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTg 157 (745)
T KOG0301|consen 87 KLSQAEPLYTLK---GHK----SNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPENTYVTG 157 (745)
T ss_pred ecCCCCchhhhh---ccc----cceeeeecCCcCceEecccccceEEec--chhhhcccCCcchheeeeeecCCCcEEec
Confidence 988665444444 333 24667774333 589999999999997 456777799999999999877 6699999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC-CcceeeeccccceEEEEEe--CCC
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSMQTHKGSVFAVFL--EGK 475 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~h~~~v~~~~~--~~~ 475 (538)
|.|.+|++|.- ++.++++.+|. ..+.. +++-+++ .+++++.||.|+.|+. +..+..+.+|+.-+.+++. ++.
T Consensus 158 saDKtIklWk~--~~~l~tf~gHt-D~VRg-L~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHT-DCVRG-LAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred cCcceeeeccC--Cchhhhhccch-hheee-eEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCC
Confidence 99999999974 78889998864 44444 4555543 5889999999999996 7899999999999999984 899
Q ss_pred EEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 476 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.++++++|++++||+.. ++.+...+. ..++..+.+..+|.+++|++||.||||...
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lP----ttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLP----TTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecC----ccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 99999999999999987 443333332 445667777889999999999999999764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-26 Score=215.37 Aligned_cols=263 Identities=29% Similarity=0.456 Sum_probs=218.0
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
..+..+.+.+++..++++..++.+.+|++ .+|...+.++.|+ ++++++++.||.|++||+.+++....+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 44777888888888888888998888874 4688899999998 669999999999999999998889999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
..|...+.++.|+++ ..++++++.||.+++||+.+.+....+. .+. .......+++++.++++++.|+.|++||
T Consensus 90 ~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 90 TGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLR---GHT--DWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred eccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEec---cCC--CcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 999999999999986 5688888889999999998544332222 221 1233456777778888888899999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEeC--CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 369 LLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
+++++.+..+..|...+.++.|++ +.+++++.|+.+++||+++++.+..+..+. ..+.. +.+++++.++++++.||
T Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-NGVNS-VAFSPDGYLLASGSEDG 241 (289)
T ss_pred ccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC-CceEE-EEEcCCCcEEEEEcCCC
Confidence 999999999999999999999993 389999999999999999988887775443 33333 68999988888888899
Q ss_pred cEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 447 SIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 447 ~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
.+++||.. +....+..|...+.++.+ ++++|++++.||.+++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999965 567777889999999987 668999999999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=218.71 Aligned_cols=306 Identities=23% Similarity=0.379 Sum_probs=237.1
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
+.+.+....++...++.|..+|.+++|+ +.||..+|+++.|+ |..|+|||.|+.|.+||+-...-...+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 3566777777888889999999999997 46899999999999 999999999999999999888888999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
++|...|+..-|.. +..++++.+.|+.|++||+++..+.. ....+ ...+.++..+++.+++++.|+.+++|+
T Consensus 146 ~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhCf~---Thvd~----r~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 146 RGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQHCFE---THVDH----RGEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred ecchHHHhHHhccC-CCeEEEEeccCceEEEEecccceeee---EEecc----cceEEEEEEecceEEEEecCCceEEEE
Confidence 99999999998876 67799999999999999998754333 22222 223556666678888999999999998
Q ss_pred CCCC----------------------------------------------------------------------------
Q 009274 369 LLDG---------------------------------------------------------------------------- 372 (538)
Q Consensus 369 ~~~~---------------------------------------------------------------------------- 372 (538)
+...
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence 8100
Q ss_pred ------------------------------------ce------------------------------eEEecCCCCCeE
Q 009274 373 ------------------------------------TL------------------------------SCTMSGHKSAVS 386 (538)
Q Consensus 373 ------------------------------------~~------------------------------~~~~~~h~~~v~ 386 (538)
.. ..++.+|...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 00 012347888999
Q ss_pred EEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccc
Q 009274 387 TLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTH 463 (538)
Q Consensus 387 ~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h 463 (538)
+++++ ++.++..+..+.+++|+..+.++++++... ...+..|-|.++++++|...|.+.+||.. ..+.+++.|
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH 453 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH 453 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence 99999 555555556789999999999999999754 33335889999999999999999999954 567788899
Q ss_pred cceEEEEEe--CCCEEEEEeCCCeEEEEecCC-------CeeEeeeecCCcccCCCceEEE-EEeCCEE-EEEECCCeEE
Q 009274 464 KGSVFAVFL--EGKWLFTGGWDKTVSVQELAG-------DEFEEDVIPTGAIPCGSVITAL-LYWQGKL-FVGCADRTVK 532 (538)
Q Consensus 464 ~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l-~sg~~dg~v~ 532 (538)
.+.+++++. |+..+++||.|.+|++||..- .+......+...+.-...+.++ ++||+++ +++=-|.+|+
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk 533 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK 533 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence 999998874 999999999999999999741 1111222233323333344444 5567775 5577899999
Q ss_pred EEEcC
Q 009274 533 VYYYG 537 (538)
Q Consensus 533 vw~~~ 537 (538)
||-+.
T Consensus 534 VyflD 538 (888)
T KOG0306|consen 534 VYFLD 538 (888)
T ss_pred EEEec
Confidence 99764
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=202.11 Aligned_cols=239 Identities=20% Similarity=0.349 Sum_probs=193.4
Q ss_pred EEEEEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 243 VKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
.++|.+..|.++|+++|+++.++++||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-.
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S----------------- 96 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS----------------- 96 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-----------------
Confidence 357889999999999999999999999999999999999999999999999999999976321
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR 400 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~ 400 (538)
.+.|++|+.||.|.+|+....+++..+++|.+.|+.++.+ +.+.++.+.
T Consensus 97 -----------------------------~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 97 -----------------------------KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred -----------------------------hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC
Confidence 1268999999999999999999999999999999999999 568889999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe-CCCEE
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL-EGKWL 477 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~-~~~~l 477 (538)
|+.++.||+-+|+....+...+. ...+.|+|.|.+++.++.+ .|-+|.++. ....+. ....+.|+.| ++..|
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L 222 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFLDGSEL 222 (362)
T ss_pred CceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh-ccccceeeeecCCceE
Confidence 99999999999987766665433 2236899999999988876 588997553 222222 2255777777 89999
Q ss_pred EEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE-EeC---CEEEEEECCCeEEEEEcC
Q 009274 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL-YWQ---GKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~l~sg~~dg~v~vw~~~ 537 (538)
++|+.|+.|.+||..+......+.. |...+-.++ +.+ ..|+++++||.|+|||+.
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~~A-----H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEFLA-----HENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEecCCceEEEeccCCCccceeeec-----chhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 9999999999999997654433332 333444444 332 358899999999999985
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=202.83 Aligned_cols=262 Identities=17% Similarity=0.273 Sum_probs=202.3
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 289 (538)
.+..+...+....++++..+....+|+ +.+|++.|+|+.|+ |.+||||+.+|.|+||+..++.....+.
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence 355555555555566666666555555 67999999999999 9999999999999999999999988887
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
..-..+.=+.|+| ...++++|+.||.+-+|.+.+.. ..+.+..+. ....+-.|.|+|+.++++..||+|++||.
T Consensus 146 ~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~--~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 146 QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQA---LCKVMSGHN--SPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred cccCceEEEEecc-cccEEEeecCCCcEEEEECCCcc---eeeEecCCC--CCcccccccCCCceEEEEecCceEEEEec
Confidence 6667778888888 66788999999999999998653 333333333 22334588999999999999999999999
Q ss_pred CCCceeEEecC---------------------------------------------------CCCCeEEEEEe---C--C
Q 009274 370 LDGTLSCTMSG---------------------------------------------------HKSAVSTLAVC---N--G 393 (538)
Q Consensus 370 ~~~~~~~~~~~---------------------------------------------------h~~~v~~l~~~---~--~ 393 (538)
.+++++..+.. +...+.|+.+. . .
T Consensus 220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 99987766541 00111122211 1 2
Q ss_pred EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEE
Q 009274 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVF 471 (538)
Q Consensus 394 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~ 471 (538)
+.++|+.||+|.|||+...+..+..... ..+.. +.|-+ ..+|++++.+|.|+.|| +++++..+.+|+..|.++.
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~he--~~V~~-l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ 375 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICEHE--DGVTK-LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA 375 (399)
T ss_pred hhhcccccceEEEEecccchhheeccCC--CceEE-EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE
Confidence 6788899999999999887766665543 33555 45666 78999999999999999 5578899999999999876
Q ss_pred e--CCCEEEEEeCCCeEEEEecC
Q 009274 472 L--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 472 ~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
. +.++++|+|.|++.+||+..
T Consensus 376 ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCCCcEEEEecCCCeEEEEecC
Confidence 5 99999999999999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=199.03 Aligned_cols=234 Identities=18% Similarity=0.316 Sum_probs=191.5
Q ss_pred CCCcEEEEEEc---CCEEEEEeCCCcEEEEeCC-CCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 009274 251 HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLK-DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 251 h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
-.+.+..++|+ .+.+++++.||++++||+. ...+++.++.|...|.++.|++.....+++++.|++|++|+...+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45789999998 7899999999999999964 3467889999999999999999888899999999999999987654
Q ss_pred CCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEecCC
Q 009274 327 GHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDG 402 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg 402 (538)
.+..+.++....+ -..++| .++.++++|.|+++++||++.......+..|...+.|+.|+ .+.+++|+.|+
T Consensus 139 ---Sv~Tf~gh~~~Iy--~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 139 ---SVQTFNGHNSCIY--QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred ---ceEeecCCccEEE--EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc
Confidence 3444555443222 235666 46799999999999999998755555588999999999999 66999999999
Q ss_pred cEEEEECCCCc-eeEEEecCCCCceEEEEEEcCC-CCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe---CC
Q 009274 403 TIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL---EG 474 (538)
Q Consensus 403 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~---~~ 474 (538)
.|+.||+++.+ ++..+.+| .-. ...+.++|. ...|++++.|-+++|||.. ..+.+...|+.-+..+.| ++
T Consensus 214 ~vr~wDir~~r~pl~eL~gh-~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 214 LVRGWDIRNLRTPLFELNGH-GLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDP 291 (311)
T ss_pred eEEEEehhhccccceeecCC-ceE-EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccC
Confidence 99999999865 45666544 233 333688886 4689999999999999954 366777889999998876 88
Q ss_pred CEEEEEeCCCeEEEEec
Q 009274 475 KWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~ 491 (538)
.++++.+.|+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 99999999999999984
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=197.11 Aligned_cols=240 Identities=17% Similarity=0.244 Sum_probs=199.1
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
-++||..+++.+.++ |++|++++.|.++.+|-..+|+.+.++.+|++.|+++.... +...+++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 478999999999999 99999999999999999999999999999999999999865 556789999999999999999
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-----CCcEEEEECC-------CCceeEEecCCCCCeEEEEEe-
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-----DRTIKAWSLL-------DGTLSCTMSGHKSAVSTLAVC- 391 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-----dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~~- 391 (538)
++.....+.. .....+.|+++|++++...+ .+.|.++|++ +.++...+..+.+.++..-|.
T Consensus 84 Gk~la~~k~~------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 84 GKQLATWKTN------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred CcEEEEeecC------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 8765554432 22234588899998777754 3689999998 456677888889999999998
Q ss_pred -CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc---------------
Q 009274 392 -NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--------------- 455 (538)
Q Consensus 392 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------- 455 (538)
+.+|++|..||.|..||+++++....-...|...+.. +.++++..++++++.|.+-++||...
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind-~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~ 236 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIND-LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNT 236 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeechhhhcccccc-ccccCCcceEEecccCccceeeeccceeeEEEeeecccccc
Confidence 7899999999999999999986654443333444444 79999999999999999999998431
Q ss_pred ------------------------------------------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 456 ------------------------------------------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 456 ------------------------------------------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
.+..+++|-++|+++++ +|+..++|+.||.||+.-.
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 12345778999998876 9999999999999999866
Q ss_pred CCC
Q 009274 492 AGD 494 (538)
Q Consensus 492 ~~~ 494 (538)
...
T Consensus 317 d~~ 319 (327)
T KOG0643|consen 317 DSN 319 (327)
T ss_pred ccc
Confidence 543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=203.58 Aligned_cols=282 Identities=14% Similarity=0.255 Sum_probs=220.7
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC------------------CceEEEEecCCcCeEEEEEecCCC
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD------------------FSHVHTFKGHDHKVMAVVYVDEDQ 305 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~ 305 (538)
..+..|+.++.+-+|+ |.+++|||.|-+|+|.|++. .-.++++..|.++|+++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 3477899999999999 99999999999999999861 134678889999999999999 55
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe---cCCC
Q 009274 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHK 382 (538)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~ 382 (538)
.+|++|+.|++|+++|+.........+.+... ......+++|.|.++++|...-++++||+++-++...- ..|+
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~---~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDT---EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhcc---ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 68899999999999999866554444444332 33446688999999999999999999999998875443 4689
Q ss_pred CCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Cccee
Q 009274 383 SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMK 458 (538)
Q Consensus 383 ~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~ 458 (538)
+.|+++.++ +++.++++.||.|++||--+++++.++...|.+...+...|..+++++++.+.|..+++|.+ +.++.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 999999999 66999999999999999999999999988888887777899999999999999999999984 45666
Q ss_pred eecccc--ceE---EEEEe--CCCEEEEEeC-CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e-CCEEEEEECC
Q 009274 459 SMQTHK--GSV---FAVFL--EGKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W-QGKLFVGCAD 528 (538)
Q Consensus 459 ~~~~h~--~~v---~~~~~--~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~sg~~d 528 (538)
.+.+-. +.. +...| ...+++.-.+ .+.+.-||.++.......... +...+..+.. | +.-+++|+.|
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg----Hn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG----HNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC----CCCCceEEEeCCCCCceeeeccc
Confidence 665531 111 12233 4455555543 467899999887643332221 3444555444 4 3448999999
Q ss_pred CeEEEEE
Q 009274 529 RTVKVYY 535 (538)
Q Consensus 529 g~v~vw~ 535 (538)
-.+++|.
T Consensus 418 ~raRFWy 424 (430)
T KOG0640|consen 418 FRARFWY 424 (430)
T ss_pred ceeeeee
Confidence 9999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=208.87 Aligned_cols=263 Identities=15% Similarity=0.210 Sum_probs=220.9
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEee-----------------cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDLQ-----------------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD 281 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-----------------~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~ 281 (538)
.+.++.++++++.+++++.+|-+.+|++. -|.++|.|++|+ ...+++|+.||.|++|.+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 47799999999999999999999999853 478999999999 78999999999999999999
Q ss_pred CceEEEEe-cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC
Q 009274 282 FSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360 (538)
Q Consensus 282 ~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 360 (538)
|.+++.|. .|+..|+|+.|+.++. .+++++.|.++++--+.+++..+.++ ++..+ ..-..++++|..+++++.
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSy--vn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR---GHSSY--VNEATFTDDGHHIISASS 368 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc---Ccccc--ccceEEcCCCCeEEEecC
Confidence 99999997 8999999999998665 55899999999999998776554444 33322 223468889999999999
Q ss_pred CCcEEEEECCCCceeEEecC--CCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCC-CceEEEEEEcC
Q 009274 361 DRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS-GAVSSVLSLTA 434 (538)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~ 434 (538)
||+|++|+..+.+++.+++. ..-+|+++-.- +..+++|...+++++.++ .|+.++.+..... +.-.-..+.+|
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecC
Confidence 99999999999999998864 34567777765 559999999999999998 4677777764332 22222358899
Q ss_pred CCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEE--eCCCEEEEEeCCCeEEEEe
Q 009274 435 VQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 435 ~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~--~~~~~l~sgs~dg~v~iwd 490 (538)
.|.++.+.+.|+.++.|. .++...++..|...+..+. |..+.+++-+.||.+++|.
T Consensus 448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999998 5678888999999988886 5888999999999999995
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=209.82 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=221.1
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe--------cCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK--------GHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
|...-+.|..|+ |++|++||.||-|.+||..+|+..+.++ -+..+|.|+.|+.+. .++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEE
Confidence 455678899999 9999999999999999999988765543 477899999998854 47799999999999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEE
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (538)
|.+.++.+...+.. .+. .-..+..|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+...|. +..+++
T Consensus 290 Wri~tG~ClRrFdr---AHt-kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR---AHT-KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEecchHHHHhhh---hhc-cCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 99998876554432 111 222356778889999999999999999999999999999999999999998 569999
Q ss_pred EecCCcEEEEECCCCceeEEEecCCC-CceEEEEEEcCCCCEEEEEeCCCcEEEEeC-Ccceeeeccc----cceEEE-E
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSS-GAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSMQTH----KGSVFA-V 470 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~h----~~~v~~-~ 470 (538)
++.||+|++|+.++.+++.+++.... -.+.+++-+..+...++++...+++++-+. ++.++.+..- ..-|.+ +
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEe
Confidence 99999999999999999999876443 345555666777889999999999999995 4556665431 223443 4
Q ss_pred EeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEEECCCeEEEEE
Q 009274 471 FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKVYY 535 (538)
Q Consensus 471 ~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~v~vw~ 535 (538)
++.|.++++.+.|+.++.|.+.++++....... ...++...-.| .+.+++-+.||.+++|.
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh----EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH----EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecc----cccccccccCcccchhhhhcccchhhhcC
Confidence 679999999999999999999999876655432 33344444444 44577889999999995
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=200.63 Aligned_cols=299 Identities=20% Similarity=0.360 Sum_probs=221.8
Q ss_pred ceeEEeecCCeEE---EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCC
Q 009274 232 KDLVNGLSKGNVK---FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306 (538)
Q Consensus 232 ~~~~~~~~~~~~~---i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 306 (538)
..+++.+.++.+. +..+.||++.|+.++.. ...+.+++.|.+.+||.+++++++.++.+|.+.|+++.|++ .+.
T Consensus 125 srivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~ 203 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGL 203 (481)
T ss_pred chheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccc
Confidence 3456666666643 34589999999999987 67899999999999999999999999999999999999988 566
Q ss_pred EEEEEcCCCcEEEEEc----cCCCCCc---------------------------------ceeeecccCCceeeeEEEEe
Q 009274 307 LCISGDSGGGIFVWSF----SFPLGHE---------------------------------PLKKWNEEKDWRYSGIHALT 349 (538)
Q Consensus 307 ~l~s~~~dg~i~vwd~----~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 349 (538)
++++++.|++..||.. ..++... ++..+..+.. ......+-
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~--vV~a~dWL 281 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA--VVSACDWL 281 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc--ceEehhhh
Confidence 8899999999999962 1111000 0000111110 01111233
Q ss_pred ecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCc-eeEEEecCCCCce
Q 009274 350 TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAV 426 (538)
Q Consensus 350 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 426 (538)
..++.++++++|.+..+||+++++++..+.||....+.++-+ ..++++.+.|.+.++||.+..- .+..|++|.. .+
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-tV 360 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-TV 360 (481)
T ss_pred cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-ce
Confidence 467899999999999999999999999999999999988887 4589999999999999998543 3566666644 44
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCc---ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 427 SSVLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
.+ ..|..+ ..+++|+.|.+|++||+++ ++.++.. .++++.+.. .+..|+.--.+..|++||+++..+.....
T Consensus 361 TS-~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 361 TS-VVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred eE-EEEecC-CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 44 355554 4689999999999999665 4555543 355665554 55577777777899999999988655432
Q ss_pred cCCcccCCCceEEEEEeCC----EEEEEECCCeEEEEEcCC
Q 009274 502 PTGAIPCGSVITALLYWQG----KLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~----~l~sg~~dg~v~vw~~~~ 538 (538)
.. .-.+...+++++|.+. .|++++.|..+.-|+++.
T Consensus 438 ts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 438 TS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cc-ccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 22 2225567777777644 389999999999999863
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=200.52 Aligned_cols=257 Identities=19% Similarity=0.303 Sum_probs=207.7
Q ss_pred cCcceeEEeecCCeEE---------EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEE
Q 009274 229 GGVKDLVNGLSKGNVK---------FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA 297 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~---------i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 297 (538)
+.+-.+++++.++..- +-+|.||+++|++.+.+ ....++++.|-+-++||.-+|..+++|+ |..-|.+
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~ 105 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKA 105 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeee
Confidence 4555666666666544 34599999999999998 5667889999999999999999999987 8899999
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE
Q 009274 298 VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377 (538)
Q Consensus 298 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 377 (538)
++|+.+ ...+++|+.+..++++|++.++. +...+..+... +.. .-|....+.+++.+.|++|++||.+++..+++
T Consensus 106 ~af~~d-s~~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~-Ir~-v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 106 VAFSQD-SNYLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGG-IRT-VLWCHEDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred EEeccc-chhhhccchHHHhhhhhccCCCC--CchhhcCCCCc-cee-EEEeccCceEEeeccCCceEEEEeccCcEEEE
Confidence 999875 45679999999999999986543 22333333321 111 23444566788889999999999999999999
Q ss_pred ecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CC
Q 009274 378 MSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--ND 454 (538)
Q Consensus 378 ~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~ 454 (538)
+. ...+|+++.++ ++.+++-...+.|.+||..+...+..++.+. .+.+ .+++|+...+++|++|..++.|| ++
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~--nV~S-ASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC--NVES-ASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc--cccc-ccccCCCceEEecCcceEEEEEeccCC
Confidence 87 57889999999 7788888889999999999999988887643 2333 58999999999999999999998 45
Q ss_pred cceeee-ccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 455 KFMKSM-QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 455 ~~~~~~-~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
..+..+ ++|.++|.|+.| +|...++||.||+|++|....++
T Consensus 257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 555554 899999999987 99999999999999999987654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=216.15 Aligned_cols=277 Identities=20% Similarity=0.286 Sum_probs=221.2
Q ss_pred EEeecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 246 KDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
.++.||...|.+++++ .+.++..+..+++++|+..+.++++++... .+.+..|.| +.+++++|...|.+.++|+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeeh
Confidence 4577999999999999 555555555779999999999999998754 889999998 667889999999999999987
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC-----CceeE--Ee-----cCCCCCeEEEEEe-
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-----GTLSC--TM-----SGHKSAVSTLAVC- 391 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~--~~-----~~h~~~v~~l~~~- 391 (538)
......++.+.+ .....+.+||+..+++||.|.+|++||..- +...+ .+ -.-...|.|+.++
T Consensus 444 ~~l~Eti~AHdg-----aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 444 ASLVETIRAHDG-----AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred hhhhhhhhcccc-----ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 765555553222 222457889999999999999999999741 11111 11 1235689999999
Q ss_pred -CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEE--eCCcceeeeccccceEE
Q 009274 392 -NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVF 468 (538)
Q Consensus 392 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~h~~~v~ 468 (538)
+.+|+++--|.++++|-+.+.+..-.+.+|.- ++.+ +.++||++++++|+.|.+|++| |.+.+-+.+-+|+..|.
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~s-mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLS-MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeeccccc-ceeE-EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 55999999999999999999998888888754 3343 7999999999999999999999 57889999999999999
Q ss_pred EEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEEEc
Q 009274 469 AVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVYYY 536 (538)
Q Consensus 469 ~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~~ 536 (538)
++.| ....+.++|.|+.|+-||-...+....+... +..+...+.+++| .+++++.|..|++|..
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H----~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH----HSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccc----hheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 9987 7889999999999999998887765544332 3334444555655 6888999999999975
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=217.41 Aligned_cols=242 Identities=17% Similarity=0.191 Sum_probs=174.5
Q ss_pred EeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCc
Q 009274 247 DLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 316 (538)
.+.||.+.|++++|+ +++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|.+..++++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 378999999999998 579999999999999999764 3567889999999999999988789999999999
Q ss_pred EEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-EEEEEe--CC
Q 009274 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-STLAVC--NG 393 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~--~~ 393 (538)
|++||+.++... ..+..+.. ....+++++++++|++++.|+.|++||+++++.+..+.+|.+.. ..+.|. ++
T Consensus 150 VrIWDl~tg~~~---~~l~~h~~--~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 150 VNVWDVERGKAV---EVIKCHSD--QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred EEEEECCCCeEE---EEEcCCCC--ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC
Confidence 999999876432 22222222 23346788999999999999999999999999999999897654 455666 45
Q ss_pred EEEEEe----cCCcEEEEECCCCce-eEEEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCc--ceeeecc-cc
Q 009274 394 VLYSGS----RDGTIRLWSLSDHSL-LTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK--FMKSMQT-HK 464 (538)
Q Consensus 394 ~l~s~s----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~-h~ 464 (538)
.+++++ .|+.|++||+++... +.....+.. .......++++++++++++ .|+.|++||+.+ ....... +.
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~-~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~ 303 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS-SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSV 303 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC-CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCC
Confidence 666554 479999999987653 333333322 2333457899999999887 599999999653 3333222 33
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEecCCC
Q 009274 465 GSVFAVFLEGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 465 ~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
.++.++++..++-+-...--..|+|.+...
T Consensus 304 ~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWSLDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEecccccccccceeeeEEEEecCC
Confidence 344455442222222222223466666544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-24 Score=214.78 Aligned_cols=235 Identities=14% Similarity=0.244 Sum_probs=172.6
Q ss_pred CCEEEEEeCCCcEEEEeCCC----------CceE---EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 262 GGFLFSSSFDKSIHVWSLKD----------FSHV---HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~----------~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
+..+++++.+.....|+... |+.. ..+.+|.+.|.+++|+|.++.++++|+.|++|++||+.+....
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~ 111 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT 111 (493)
T ss_pred CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence 44555555555555555433 2211 2467899999999999966778999999999999999764321
Q ss_pred ----cceeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecC
Q 009274 329 ----EPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (538)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d 401 (538)
..+..+..+.. ....++|+|++ ++|++|+.|++|++||+++++.+..+.+|...|.+++|+ +.+|++++.|
T Consensus 112 ~~~~~~l~~L~gH~~--~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 112 QNISDPIVHLQGHTK--KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred cccCcceEEecCCCC--cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC
Confidence 22333444332 23356788875 699999999999999999999999999999999999999 5699999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEe----CCCcEEEEeCCcc---eeeeccccc-eEEEEE--
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH----ESGSIKVWRNDKF---MKSMQTHKG-SVFAVF-- 471 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~---~~~~~~h~~-~v~~~~-- 471 (538)
++|++||+++++.+..+..+....... +.|.+++..+++++ .|+.|++||.++. ......+.. .+....
T Consensus 190 g~IrIwD~rsg~~v~tl~~H~~~~~~~-~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d 268 (493)
T PTZ00421 190 KKLNIIDPRDGTIVSSVEAHASAKSQR-CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD 268 (493)
T ss_pred CEEEEEECCCCcEEEEEecCCCCcceE-EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc
Confidence 999999999999888887664433333 46777777777654 4789999997653 333333332 333333
Q ss_pred eCCCEEEEEe-CCCeEEEEecCCCeeEee
Q 009274 472 LEGKWLFTGG-WDKTVSVQELAGDEFEED 499 (538)
Q Consensus 472 ~~~~~l~sgs-~dg~v~iwd~~~~~~~~~ 499 (538)
+++++|++++ .|+.|++||+.+++....
T Consensus 269 ~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 269 EDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 3888888887 599999999998876544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-26 Score=223.49 Aligned_cols=280 Identities=16% Similarity=0.269 Sum_probs=192.5
Q ss_pred EEee-cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCc----------CeEEEEEec---C-CCCEE
Q 009274 246 KDLQ-GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----------KVMAVVYVD---E-DQPLC 308 (538)
Q Consensus 246 ~~l~-~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----------~v~~l~~~~---~-~~~~l 308 (538)
..+. .|.++|+++.|+ |+|||+|+.|+.|+||.+...+....-.+... .+..+.-++ . .....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3456 899999999999 99999999999999999865322111000000 000000000 0 00000
Q ss_pred EEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEE
Q 009274 309 ISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVST 387 (538)
Q Consensus 309 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 387 (538)
-.+.....+.+-+....-...++..+.+| ...++.+++..+ +|++++.|.+|++|++...+++..|. |.+.|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GH----t~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGH----TADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhcc----chhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 11111122222111111223344444443 345788888755 99999999999999999999999987 9999999
Q ss_pred EEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeec---
Q 009274 388 LAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQ--- 461 (538)
Q Consensus 388 l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 461 (538)
++|+ ++++++||-|+.++||++...+.+.-...+ .. .+.+++.|||+..++|+.+|.+++|++........
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~l-ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DL-ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhh--hh-heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999 669999999999999999888776655443 33 44479999999999999999999999764322111
Q ss_pred --------cccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCC
Q 009274 462 --------THKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADR 529 (538)
Q Consensus 462 --------~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg 529 (538)
.|. .|+.+.+ +...+++.+.|..|||+|.++..+...+..... ....+.+-+..||. +++|++|.
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n--~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN--TSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc--CCcceeeeEccCCCEEEEeecCc
Confidence 123 7999876 445688888999999999988776655543322 44455665555654 88899999
Q ss_pred eEEEEEc
Q 009274 530 TVKVYYY 536 (538)
Q Consensus 530 ~v~vw~~ 536 (538)
.|++|++
T Consensus 569 ~VYiW~~ 575 (712)
T KOG0283|consen 569 WVYIWKN 575 (712)
T ss_pred eEEEEeC
Confidence 9999997
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=221.98 Aligned_cols=230 Identities=20% Similarity=0.301 Sum_probs=197.1
Q ss_pred CCCccceeeeeccCcceeEEeecCCeEEEEE-------------------------------------------------
Q 009274 217 SDGADIDQARAAGGVKDLVNGLSKGNVKFKD------------------------------------------------- 247 (538)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------------------------------------------------- 247 (538)
.....|.++.|+.++++++++..|+.+++|.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 3456699999999999999999999999986
Q ss_pred --------------------eecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCC
Q 009274 248 --------------------LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306 (538)
Q Consensus 248 --------------------l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 306 (538)
|.||.+.|..++|+ +++|+++|.|.+||+|++...+++..|. |.+.|+|++|+|.+.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 23699999999999 9999999999999999999999999987 9999999999999999
Q ss_pred EEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec--CC---
Q 009274 307 LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS--GH--- 381 (538)
Q Consensus 307 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h--- 381 (538)
+|++|+-||.++||++... .+..|..-. .....+++.|+|+..++|+.+|.+++|+....+...... .|
T Consensus 424 yFiSGSLD~KvRiWsI~d~----~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDK----KVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cEeecccccceEEeecCcC----eeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9999999999999998743 333444333 334456999999999999999999999998776655431 11
Q ss_pred ---CCCeEEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 009274 382 ---KSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (538)
Q Consensus 382 ---~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 453 (538)
...|+.+.|. .+.+++.+.|..|+|+|.++..++..+++.+.........|+.||++|++++.|..|++|+.
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 2279999998 34799999999999999999999999998776665555789999999999999999999985
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=209.15 Aligned_cols=261 Identities=16% Similarity=0.290 Sum_probs=211.8
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEeec-----------CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQG-----------HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-----------h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
..+..+.+..+...++++..+..+++|+..+ -.++|+++.|. +.++++++.|+.+++|++.+.+...
T Consensus 176 gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~ 255 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH 255 (459)
T ss_pred cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh
Confidence 4466777778888899999999999888544 44679999998 8999999999999999999999999
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEE
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~i 366 (538)
++.+|++.|+++.|...... +++|+.|.+|++||+....+...+.... .+..+...+..+++|..|++|++
T Consensus 256 TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S--------~cnDI~~~~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 256 TLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGS--------QCNDIVCSISDVISGHFDKKVRF 326 (459)
T ss_pred hhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccc--------cccceEecceeeeecccccceEE
Confidence 99999999999999764443 8999999999999998755444333211 12233333667899999999999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCC--CCceEEEEEEcCCCCEEEEE
Q 009274 367 WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS--SGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 442 (538)
||.++..+......+. .|+++..+ +..+++++.|.++.+.|+++.+..+.+.... .+.-.+...|||++.|+++|
T Consensus 327 wD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 327 WDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 9999999999988765 89999988 4588999999999999999999887776431 11113336899999999999
Q ss_pred eCCCcEEEEe--CCcceeeeccccc--eEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 443 HESGSIKVWR--NDKFMKSMQTHKG--SVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 443 ~~dg~i~iwd--~~~~~~~~~~h~~--~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
+.||.|+||+ .+++...+..... .|++++| .|..+++++.++.+.+|.
T Consensus 406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999 4456666655443 5999998 789999999999999993
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-26 Score=217.35 Aligned_cols=261 Identities=21% Similarity=0.310 Sum_probs=202.8
Q ss_pred cCcceeEEeecCCeEEEEEe---------------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC--ceEEEEe
Q 009274 229 GGVKDLVNGLSKGNVKFKDL---------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SHVHTFK 289 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~l---------------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~ 289 (538)
++++.++++..+|.+++|.. +.|.++|+.++.. ++.|+++|.|-+|++|+...+ -++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 45567889999999988874 4577888887776 789999999999999999876 5678889
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC--C---cceeeecccCCceeeeEEEEe--ecCCEEEEeeCCC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG--H---EPLKKWNEEKDWRYSGIHALT--TSGRYLYTGSGDR 362 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg 362 (538)
.|.+.|.|+++...+..++++|+.|+.|.+||++++.. . ..+....... .+..++.++. +.|..+++|+..+
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s-G~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS-GPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC-CCccceeeeecCCcceEEEecCccc
Confidence 99999999999666778999999999999999997633 1 1111111110 1223344444 4455999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (538)
.+++||.++++.+..+.||+..|.++..+ +..++++|.||+|++||+...+++.++..|..+ +. .+..+|+=..++
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-VW-aL~~~~sf~~vY 271 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-VW-ALQSSPSFTHVY 271 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc-eE-EEeeCCCcceEE
Confidence 99999999999999999999999999998 559999999999999999999999999888766 33 367788889999
Q ss_pred EEeCCCcEEEEeCCcce--eeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 441 VSHESGSIKVWRNDKFM--KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 441 ~~~~dg~i~iwd~~~~~--~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+|+.||.|..=|+++.. ..+-....+|..+.. +.+-+-+++.|+.|+-|...
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999999998876531 111123344544443 34445777889999999764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=213.70 Aligned_cols=226 Identities=12% Similarity=0.152 Sum_probs=172.5
Q ss_pred EeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC-----cceeeecccCCcee
Q 009274 268 SSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH-----EPLKKWNEEKDWRY 342 (538)
Q Consensus 268 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~ 342 (538)
|+.++.|++|+......+..+.+|.+.|.+++|+|+++.++++|+.||+|++||+.+.... ..+..+..+. ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC--Cc
Confidence 6678999999998888889999999999999999987889999999999999999764321 1122222332 22
Q ss_pred eeEEEEeecCCE-EEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEe
Q 009274 343 SGIHALTTSGRY-LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLE 419 (538)
Q Consensus 343 ~~~~~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 419 (538)
...++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+ +.+|++++.|+.|++||+++++.+..+.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 345678887774 5789999999999999998877775 66789999998 5688889999999999999999998888
Q ss_pred cCCCCceEEE---EEEcCCCCEEEEEeCCC----cEEEEeCCc---ceeeecc--ccceEEEE-Ee-CCCEEEEEeCCCe
Q 009274 420 EDSSGAVSSV---LSLTAVQHTLVVSHESG----SIKVWRNDK---FMKSMQT--HKGSVFAV-FL-EGKWLFTGGWDKT 485 (538)
Q Consensus 420 ~~~~~~~~~~---~~~~~~~~~l~~~~~dg----~i~iwd~~~---~~~~~~~--h~~~v~~~-~~-~~~~l~sgs~dg~ 485 (538)
.|.......+ ..+++++.++++++.|+ +|++||.+. ++..+.. +.+.+... .. ++.++++|+.|++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 7654322222 23468889999988774 799999664 4443322 22333222 22 5889999999999
Q ss_pred EEEEecCCCee
Q 009274 486 VSVQELAGDEF 496 (538)
Q Consensus 486 v~iwd~~~~~~ 496 (538)
|++|++..+..
T Consensus 287 Ir~~e~~~~~~ 297 (568)
T PTZ00420 287 CRYYQHSLGSI 297 (568)
T ss_pred EEEEEccCCcE
Confidence 99999987653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=203.65 Aligned_cols=266 Identities=21% Similarity=0.328 Sum_probs=202.9
Q ss_pred CCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 252 RDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 252 ~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
.++|++++|+ ..-+++.+ .-.+.||+..+....+++......|.++.|-. ++.++++|+..|.|+++|+.+ .
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~---r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKS---R 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEecccc---H
Confidence 3789999999 33344443 33699999988888888877889999999966 567999999999999999654 1
Q ss_pred cceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEecCCcE
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTI 404 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i 404 (538)
..+..+..+. .......|+++++ .+++|++|+.+++||+.+......+.+|++.|.|.+|+ +..++|||.||+|
T Consensus 101 ~iLR~~~ah~--apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 101 VILRQLYAHQ--APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHHhhcc--CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 2233333332 2223457777655 88999999999999999988766899999999999999 3489999999999
Q ss_pred EEEECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe--CCCEEE
Q 009274 405 RLWSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL--EGKWLF 478 (538)
Q Consensus 405 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~--~~~~l~ 478 (538)
++||++.. ..+..+.. ...+.. +.+-|.|..+++++.. .+++||+- +.+..+..|...|+|+.+ ++..|+
T Consensus 179 rl~DtR~~~~~v~elnh--g~pVe~-vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNH--GCPVES-VLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EEEEeccCCceeEEecC--CCceee-EEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 99999987 45555543 444555 4677888888888754 79999943 344455559999999988 779999
Q ss_pred EEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeC-CEEEEEECCCeEEE
Q 009274 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKV 533 (538)
Q Consensus 479 sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~v~v 533 (538)
+||-|+.|++||+.+-+........+ ++..+..+++ ..++.|..||.+.+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~~~~-----pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWKYPG-----PVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecccccceEEEEccceEEEEeeeccc-----ceeeEEecCCCceEEEecccceeee
Confidence 99999999999988877766555432 2445555554 45888999998765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=198.29 Aligned_cols=242 Identities=20% Similarity=0.275 Sum_probs=203.3
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
+..|+||...|+.+.++ ...+++++.|-.|+||.............|..+|+.+..+|.+ .+|++++.||+..+.|+
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEc
Confidence 44589999999999999 7889999999999999998888888888999999999999855 47799999999999999
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEec
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSR 400 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~s~ 400 (538)
+++......... ..........|+|||..|.+|+.||.|++||+.++..+..|.+|.++|..++|+ ++ ++++++.
T Consensus 333 ~~g~~lt~vs~~---~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 333 SSGSQLTVVSDE---TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred cCCcEEEEEeec---cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 987654333322 111223456899999999999999999999999999999999999999999999 44 8999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC----CcceeeeccccceEEEEEe--CC
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN----DKFMKSMQTHKGSVFAVFL--EG 474 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~~~~h~~~v~~~~~--~~ 474 (538)
|+.|++||+|..+...++.......+.. +.|.+.|.+|+.++.|=+|++++. -+....+..|.+..+++.| ..
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s-~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNS-LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred CCeEEEEEehhhcccceeecccccccee-EEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 9999999999999888887665443444 799999999999988877777772 2356667778888899998 67
Q ss_pred CEEEEEeCCCeEEEEec
Q 009274 475 KWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~ 491 (538)
++++++|.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 89999999999888764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=202.24 Aligned_cols=251 Identities=20% Similarity=0.283 Sum_probs=195.7
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce-ee------e----ccc--CCceeeeEEEEeec
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL-KK------W----NEE--KDWRYSGIHALTTS 351 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~------~----~~~--~~~~~~~~~~~~~~ 351 (538)
...+..|.-++.+++++|++. +.++++.||+|.-|++.+++....+ .. . ... ......-.+++++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 445667999999999988655 6689999999999999887644111 11 0 001 11123345688999
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEE
Q 009274 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429 (538)
Q Consensus 352 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 429 (538)
+++|++|+.|..|.|||.++.+.++.+++|.+.|.+++|- .+.+++++.|+++++|++.....+.++.+|+.. +..
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-v~~- 291 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-VLG- 291 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc-eee-
Confidence 9999999999999999999999999999999999999999 559999999999999999998888888887653 333
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeeccccceEEEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCccc
Q 009274 430 LSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIP 507 (538)
Q Consensus 430 ~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~ 507 (538)
+....-++.+-+|+.|+++++|++.. ....+.+|.+.+-|+++ +...+++||.||.|.+|++...+........+.+.
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred echhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 35555677788888999999999654 45567889999999998 99999999999999999998887655544333222
Q ss_pred CC-------CceEEEEE-e-CCEEEEEECCCeEEEEEcCC
Q 009274 508 CG-------SVITALLY-W-QGKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 508 ~~-------~~~~~~~~-~-~~~l~sg~~dg~v~vw~~~~ 538 (538)
.. .++++++. + .+.+++|+.+|.|++|.+++
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 22 24554443 4 44577899999999999863
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=209.77 Aligned_cols=248 Identities=26% Similarity=0.410 Sum_probs=200.5
Q ss_pred CcceeEEeecCCeEEEEE-----------eecCCCcEEE-EEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcC
Q 009274 230 GVKDLVNGLSKGNVKFKD-----------LQGHRDCVTG-LAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK 294 (538)
Q Consensus 230 ~~~~~~~~~~~~~~~i~~-----------l~~h~~~V~~-l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 294 (538)
.+..+++++.++++++|. +.+|.+.|.+ +++. +..+++|+.|.+|.+|......++.++++|...
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn 103 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN 103 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc
Confidence 344577777788888776 4567888877 7776 567999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEe-ecCCEEEEeeCCCcEEEEECCCCc
Q 009274 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT-TSGRYLYTGSGDRTIKAWSLLDGT 373 (538)
Q Consensus 295 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~ 373 (538)
|.++....++ .+++|+.|.++++|....... .+..|.. .+.++. ...+.++|||.|.+|++|.- ++
T Consensus 104 VC~ls~~~~~--~~iSgSWD~TakvW~~~~l~~-----~l~gH~a----sVWAv~~l~e~~~vTgsaDKtIklWk~--~~ 170 (745)
T KOG0301|consen 104 VCSLSIGEDG--TLISGSWDSTAKVWRIGELVY-----SLQGHTA----SVWAVASLPENTYVTGSADKTIKLWKG--GT 170 (745)
T ss_pred eeeeecCCcC--ceEecccccceEEecchhhhc-----ccCCcch----heeeeeecCCCcEEeccCcceeeeccC--Cc
Confidence 9999865433 379999999999998763222 2333322 222222 12338999999999999984 78
Q ss_pred eeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 374 LSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 374 ~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
.++++.+|.+.|+.+++- +..+++|+.||.|++|++ +++.+....+|. ..+.+ +....++..++++++|+++++|+
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ght-n~vYs-is~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHT-NFVYS-ISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred hhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccc-eEEEE-EEecCCCCeEEEecCCceEEEee
Confidence 999999999999999998 559999999999999999 788888877763 44444 56778888999999999999999
Q ss_pred CCcceeeeccccceEEEEEe-CCCEEEEEeCCCeEEEEecCC
Q 009274 453 NDKFMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 453 ~~~~~~~~~~h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~ 493 (538)
...+.+.+......|+++.. ...-+++|+.||.||||....
T Consensus 248 ~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 248 KDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999888888998876 566688999999999998763
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-24 Score=212.55 Aligned_cols=223 Identities=14% Similarity=0.189 Sum_probs=167.3
Q ss_pred EEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCc--------eEEEEecCCcCeEEEEEecCCCCEEEEEc
Q 009274 244 KFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFS--------HVHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 312 (538)
.+..+.+|.++|.+++|+ +++|+||+.|++|+|||+.++. .+..+.+|...|.+++|+|++..++++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 456789999999999998 5799999999999999997542 34567899999999999998887889999
Q ss_pred CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEE---
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA--- 389 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--- 389 (538)
.|++|++||++++.....+ ... .....++|+++|++|++++.|+.|++||+++++.+.++.+|.+.+.+..
T Consensus 146 ~DgtIrIWDl~tg~~~~~i---~~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQI---NMP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred CCCeEEEEECCCCcEEEEE---ecC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEe
Confidence 9999999999876533222 111 1233567889999999999999999999999999999999988754433
Q ss_pred --Ee--CCEEEEEecCC----cEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-ceee
Q 009274 390 --VC--NGVLYSGSRDG----TIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKS 459 (538)
Q Consensus 390 --~~--~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~ 459 (538)
|+ ++++++++.|+ .|++||+++ ++++..+..+...........++++.++++|+.|+.|++|+... ....
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRK 299 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEe
Confidence 22 45888888774 799999995 55666654433222222233456688999999999999999643 2222
Q ss_pred ecc--ccceEEEEEe
Q 009274 460 MQT--HKGSVFAVFL 472 (538)
Q Consensus 460 ~~~--h~~~v~~~~~ 472 (538)
+.. +..++.++++
T Consensus 300 l~~~~s~~p~~g~~f 314 (568)
T PTZ00420 300 VNEYKSCSPFRSFGF 314 (568)
T ss_pred ecccccCCCccceEE
Confidence 222 4455556655
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=217.34 Aligned_cols=282 Identities=19% Similarity=0.200 Sum_probs=213.7
Q ss_pred CCCcEEEEEEc--CCEEEEEe--CCCcEEEEeCCC------------CceEEEEecCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 251 HRDCVTGLAVG--GGFLFSSS--FDKSIHVWSLKD------------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s--~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
+...|.+++.+ +..++||+ .|+.++||+.+. .+.+.+...|.+.|.|+.|++++ .+||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCc
Confidence 45668899998 89999999 999999998642 24456677899999999999955 577999999
Q ss_pred CcEEEEEccCCCC---------Cc------ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec
Q 009274 315 GGIFVWSFSFPLG---------HE------PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS 379 (538)
Q Consensus 315 g~i~vwd~~~~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 379 (538)
+.|.+|+...... .. ....+..|.. .. .-.+++|++.++++++.|++|.+||.++.+.+..+.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV-~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-DV-LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-cc-ceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 9999999873100 00 1111222221 11 123788889999999999999999999999999999
Q ss_pred CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCC----CceEEEEEEcCCCCEEEEEeC----CCcEE
Q 009274 380 GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS----GAVSSVLSLTAVQHTLVVSHE----SGSIK 449 (538)
Q Consensus 380 ~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~----dg~i~ 449 (538)
+|.+.|..+.|+ +.++++-+.|++|++|++.+....+.+..+.. ......+.|+|||++|++... -.++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 999999999999 88999999999999999888777666654322 233445799999999998643 34677
Q ss_pred EEeCC--cceeeeccccceEEEEEeC-------CC------------EEEEEeCCCeEEEEecCCCeeEeeeecCCcccC
Q 009274 450 VWRND--KFMKSMQTHKGSVFAVFLE-------GK------------WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508 (538)
Q Consensus 450 iwd~~--~~~~~~~~h~~~v~~~~~~-------~~------------~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~ 508 (538)
|.+-+ +.-..+-+|..++.++.|+ .+ .+++||.|++|-||.....+........ ..
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l---f~ 325 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL---FN 325 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh---hc
Confidence 77643 4567889999999999761 12 6889999999999999776654433322 13
Q ss_pred CCceEEEEEeCCE-EEEEECCCeEEEEEcCC
Q 009274 509 GSVITALLYWQGK-LFVGCADRTVKVYYYGK 538 (538)
Q Consensus 509 ~~~~~~~~~~~~~-l~sg~~dg~v~vw~~~~ 538 (538)
.++.-..+.+||. |+++|.||+|.+..|.+
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 3344444445776 89999999999998863
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=171.50 Aligned_cols=285 Identities=19% Similarity=0.249 Sum_probs=210.3
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC------C-----ce----EEEEecCCcCeEEEEEecCCCCEEEEEc
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD------F-----SH----VHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~------~-----~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 312 (538)
.....|.+++|+ |.+.+.|+...+.+|..... + ++ .+.-+.|.+.|+|.+|+|.+ .++++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecC
Confidence 456789999999 99999999999999875421 1 11 12234689999999999955 4889999
Q ss_pred CCCcEEEEEccCCCCCcc--eeeecccCCceeeeEEEEeec----CCEEEEee-CCCcEEEEECCCCceeEEecCCCCCe
Q 009274 313 SGGGIFVWSFSFPLGHEP--LKKWNEEKDWRYSGIHALTTS----GRYLYTGS-GDRTIKAWSLLDGTLSCTMSGHKSAV 385 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v 385 (538)
.|.+|++..++...+... -..++.+... .. -++|--+ +..|++++ .|..|++-|..+|+..+.+.+|.+.|
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgt-ir-dl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGT-IR-DLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCc-ee-eeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 999999987765433222 1222222221 11 1233222 33666655 47788899999999999999999999
Q ss_pred EEEE-EeCCEEEEEecCCcEEEEECCCCceeEEEecCCC-----CceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cce
Q 009274 386 STLA-VCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFM 457 (538)
Q Consensus 386 ~~l~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~ 457 (538)
.++- |++-++++|+.|.+|++||++-..++.++..... ......++..|.|++|++|-.|....+||++ .++
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 8874 5577999999999999999999888887753211 1233446899999999999999999999965 589
Q ss_pred eeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEE
Q 009274 458 KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVY 534 (538)
Q Consensus 458 ~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw 534 (538)
+.+..|...|.|+.| ...++++++.|..|++=|+.+.-........-.-+....+.+-+.+.. .+++.+.|.++.+|
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 999999999999987 667999999999999999986532111111111113446677676644 48899999999999
Q ss_pred EcC
Q 009274 535 YYG 537 (538)
Q Consensus 535 ~~~ 537 (538)
-++
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 875
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=206.16 Aligned_cols=234 Identities=21% Similarity=0.375 Sum_probs=199.6
Q ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec-CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (538)
+.+.|+++.|+ |++|++|..+|.|.|||..+.+.+..+.+ |...|.+++|. ...+.+|+.|+.|..+|++....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchh
Confidence 38999999999 99999999999999999999999999998 99999999995 56889999999999999987654
Q ss_pred CcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEe--cCC
Q 009274 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGS--RDG 402 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s--~dg 402 (538)
... ....|. .......+++|++++++|+.|+.+.|||....+++..+..|...|.+++|+ .++||+|+ .|+
T Consensus 293 ~~~--~~~~H~--qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 293 VVS--TLQGHR--QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred hhh--hhhccc--ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 433 122222 333456889999999999999999999998889999999999999999999 67999975 699
Q ss_pred cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE--eCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCE
Q 009274 403 TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS--HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKW 476 (538)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~ 476 (538)
.|++||..+++.+..+... ...+.+.|++..+-|+++ ..++.|.||+.. +.+..+.+|...|..+++ ||..
T Consensus 369 ~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET 445 (484)
T ss_pred EEEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence 9999999999988887643 234447899988767664 467899999954 577889999999988765 9999
Q ss_pred EEEEeCCCeEEEEecCCC
Q 009274 477 LFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 477 l~sgs~dg~v~iwd~~~~ 494 (538)
+++|+.|.++++|++-+.
T Consensus 446 i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEecccCcEEeccccCC
Confidence 999999999999999764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=202.19 Aligned_cols=272 Identities=16% Similarity=0.203 Sum_probs=208.3
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEEeec--------------CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDLQG--------------HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF 282 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--------------h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~ 282 (538)
...|....+.+.+.++++|+.+-.+++|+|.| ....|++++|+ ++.|++.+.....+|+|-...
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~ 246 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF 246 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc
Confidence 34566777788899999999999999999876 23578999999 888888888889999996544
Q ss_pred ceEEE------------EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce-eeecccCCceeeeEEEEe
Q 009274 283 SHVHT------------FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL-KKWNEEKDWRYSGIHALT 349 (538)
Q Consensus 283 ~~~~~------------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 349 (538)
+.... -++|...++|.+|+|.....|++++.||++++||+...+....+ +.............++|+
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC
Confidence 43332 25799999999999999999999999999999999876644333 222222223444567999
Q ss_pred ecCCEEEEeeCCCcEEEEECCCCc--ee-EEecCCCC--CeEEEEEe--CCEEEEEecCCcEEEEECCCCc-eeEEEecC
Q 009274 350 TSGRYLYTGSGDRTIKAWSLLDGT--LS-CTMSGHKS--AVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS-LLTVLEED 421 (538)
Q Consensus 350 ~~~~~l~sg~~dg~i~iwd~~~~~--~~-~~~~~h~~--~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~ 421 (538)
++++.|++|+.||.|.+||..+.. +. ..-.+|.. .|+||.|+ +++|++-+.|+++++||++..+ ++....+-
T Consensus 327 rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL 406 (641)
T KOG0772|consen 327 RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL 406 (641)
T ss_pred CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC
Confidence 999999999999999999975432 22 22356877 99999999 7799999999999999999865 44444332
Q ss_pred CCCceEEEEEEcCCCCEEEEEeC------CCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHE------SGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
.......-++|+|+.++|++|+. .|++.+||..+ .++.+......|..+.| .-+.|..|+.||++++|-
T Consensus 407 ~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 407 PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 22222233699999999999864 57899999654 45566666777888877 445788888899999873
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=202.41 Aligned_cols=278 Identities=17% Similarity=0.242 Sum_probs=217.2
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
...+..|.+.|..+.|- .+.|++|+.|..|++|++...+ .+.++.+..++|+++.|-++ ++.+++++.|+.+++|
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeee
Confidence 45578899999999998 4899999999999999987666 67788888999999999774 5567889999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEec
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSR 400 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 400 (538)
++........+.. |.+. .. ...+......+++|+.|.+|+.||+....+..++. ..+.+..|..++..+++|..
T Consensus 247 nvd~~r~~~TLsG---Htdk-Vt-~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~~~~~SgH~ 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSG---HTDK-VT-AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSISDVISGHF 320 (459)
T ss_pred eccchhhhhhhcc---cccc-ee-eehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEecceeeeeccc
Confidence 9987665555544 3221 11 11222333359999999999999999988887765 35667778777788999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeec------cccceEEEEEe
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQ------THKGSVFAVFL 472 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~------~h~~~v~~~~~ 472 (538)
|++|++||+++..+......+. .+. .+..++++..+.+++.|.++.+.|.+. ....+. +|.-.-..++|
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg--~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG--RVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCc--cee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 9999999999999988887653 344 479999999999999999999999664 233332 24433345567
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe--CCEEEEEECCCeEEEEE
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKVYY 535 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~v~vw~ 535 (538)
++.|+++||.||.|+||++.++++......... .+.++++.|. +..+++++.++.+.+|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s---~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS---NAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCC---CcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999998776655432 2256666665 44599999999999993
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-23 Score=180.89 Aligned_cols=278 Identities=14% Similarity=0.160 Sum_probs=210.7
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc-CCCcEEEEEccC
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD-SGGGIFVWSFSF 324 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~ 324 (538)
+..-.+.|+++.|+ |.++++++.|.++++||..+++.++++..+...+..++|......++.+.. .|.+|+..++.+
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 44466889999999 999999999999999999999999999999899999999876665544433 388999999986
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEecCC
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDG 402 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~s~dg 402 (538)
.+ .++-+.+|.. .+ ...+++|-++.+++++.|++|++||++..++...+.....+ ..+|+ .+ ++|++....
T Consensus 90 Nk---ylRYF~GH~~-~V-~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 90 NK---YLRYFPGHKK-RV-NSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSE 162 (311)
T ss_pred Cc---eEEEcCCCCc-eE-EEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCC
Confidence 54 4555555554 22 24577888899999999999999999988887776544444 45666 33 666666666
Q ss_pred cEEEEECCCC--ceeEEEecC-CCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceE----E-EEEe
Q 009274 403 TIRLWSLSDH--SLLTVLEED-SSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSV----F-AVFL 472 (538)
Q Consensus 403 ~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v----~-~~~~ 472 (538)
.|++||+|.- .+..++... ........+.|+|||++++.++..+.+++.| .+....++..+...- . +..|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999974 344455433 1222334479999999999999999999999 566777777665432 2 3346
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEc
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~ 536 (538)
|++++++|+.||+|.+|+++++......... +...+.++-+.+....-++.+..+.+|=.
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~----~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP----NGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecCC----CCCCccccccCCceeeeeecCceEEEEec
Confidence 9999999999999999999998876655543 34456666677777666777777888843
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-24 Score=184.61 Aligned_cols=261 Identities=18% Similarity=0.218 Sum_probs=186.8
Q ss_pred CCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC-CceE-EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 251 HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-FSHV-HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 251 h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
-.+.|.+|+|+ ..+++++|.||+||+|+++. |..+ +....|.++|.+++|+.++ ..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCC
Confidence 45789999999 67888999999999999976 3332 3445699999999998866 67799999999999999987
Q ss_pred CCCcceeeecccCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcE
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTI 404 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i 404 (538)
+. ..+..+.. ....+..+..- -..|+|||.|++|+.||.++..++.++. -...++++..-..+++++..++.|
T Consensus 105 Q~-~~v~~Hd~----pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 QV-SQVAAHDA----PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYPMAVVATAERHI 178 (347)
T ss_pred Ce-eeeeeccc----ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCceeEEEecCCcE
Confidence 32 22222221 22223333332 2389999999999999999999998886 467788888888899999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC----cceeeeccccc---------eEEEEE
Q 009274 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND----KFMKSMQTHKG---------SVFAVF 471 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~h~~---------~v~~~~ 471 (538)
.+|+++++................+++...+....+.|+-+|.+.+..+. +.-.+++.|.. .|.+++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 99999876543322222223334446777777777999999999988643 33446666763 345566
Q ss_pred e--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEE
Q 009274 472 L--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLF 523 (538)
Q Consensus 472 ~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 523 (538)
| .-..|+|+|.||+..+||-........... +...+++..++ +|.++
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-----~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-----HPQPITCCSFNRNGSIF 308 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCc-----CCCccceeEecCCCCEE
Confidence 6 667899999999999999876543222221 33345555554 66644
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=183.27 Aligned_cols=261 Identities=18% Similarity=0.221 Sum_probs=191.6
Q ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 252 ~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
.+.|+++.|+ ++.|+.+++||++++||+........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecCCccee
Confidence 5789999998 7788888899999999998876655555 899999999976 4467999999999999998765332
Q ss_pred ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEEC
Q 009274 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSL 409 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~ 409 (538)
.. . |. ....++...+..+.+++|++|++|++||.++...+..+. ....|.++...++.|++|+.|..+.+||+
T Consensus 90 ig-t---h~--~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 90 IG-T---HD--EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ec-c---CC--CceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCCEEEEeecCceEEEEEc
Confidence 21 1 11 122244555557799999999999999999866666654 34589999999999999999999999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEE--eCC----cceeeeccccc---------eEEEEEe--
Q 009274 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RND----KFMKSMQTHKG---------SVFAVFL-- 472 (538)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw--d~~----~~~~~~~~h~~---------~v~~~~~-- 472 (538)
++.....+.....-...+.++++-|++.-.++++-||.|.+= |.. +....++.|.. +|.+++|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 987765544433333445556777888889999999998874 433 34455666643 6778877
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE-EEEEEC
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK-LFVGCA 527 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~sg~~ 527 (538)
--+.|+||+.||.|.+||+...+....+... .. .+..+.+ .+|. |++|++
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~----~~-SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKY----ET-SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCC----CC-ceEEEEeccCCCeEEEEec
Confidence 5568999999999999999887644332221 12 2344444 4554 665553
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-23 Score=201.02 Aligned_cols=311 Identities=19% Similarity=0.272 Sum_probs=236.1
Q ss_pred CCCCccceeeeeccCcceeEEeecCCeEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCc
Q 009274 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH 293 (538)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 293 (538)
-++...++.+........+....-..+..+++++++...|+++.-+ =+.++.|..+|+|.++++..++.+.+|+...+
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g 245 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG 245 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc
Confidence 3444455554443333333322223333455578899999999988 78999999999999999999999999996679
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee-----------------------------------------
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK----------------------------------------- 332 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------------------------------------- 332 (538)
.|++++|..++..++++|+..|.+.+||++..+....+.
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 999999999999999999999999999987511000000
Q ss_pred --------------------------------------------------------------------------------
Q 009274 333 -------------------------------------------------------------------------------- 332 (538)
Q Consensus 333 -------------------------------------------------------------------------------- 332 (538)
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence
Q ss_pred --------------------eeccc-----------C----CceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE
Q 009274 333 --------------------KWNEE-----------K----DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377 (538)
Q Consensus 333 --------------------~~~~~-----------~----~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 377 (538)
.|+.. . .......+++++-|++.+.|+..|.|-+|++.+|-....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 00000 0 000111226677789999999999999999999988888
Q ss_pred e---cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 378 M---SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 378 ~---~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
+ ..|.++|++++.+ +..+++++.+|.+++||..+...+..+..... ...+..+.....++.+..|-.|+++|
T Consensus 486 f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~---~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS---ITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC---cceeeeeehhhhhhhhcCceeEEEEE
Confidence 8 5899999999998 67999999999999999999888888775433 22346666778899999999999999
Q ss_pred --CCcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEE-EEeCC-EEEEEE
Q 009274 453 --NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQG-KLFVGC 526 (538)
Q Consensus 453 --~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~sg~ 526 (538)
+++..+.+.+|.+.|++++| ||++|++++.|++|++||+.++.+.-..... .++..+ ++|++ .|++..
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd------~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD------SPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC------CcceeeEECCCCCEEEEEE
Confidence 56788999999999999887 9999999999999999999999876554432 233334 44544 578887
Q ss_pred CC-CeEEEEE
Q 009274 527 AD-RTVKVYY 535 (538)
Q Consensus 527 ~d-g~v~vw~ 535 (538)
.| .-|++|-
T Consensus 637 vd~~gIylWs 646 (910)
T KOG1539|consen 637 VDQNGIYLWS 646 (910)
T ss_pred ecCceEEEEE
Confidence 77 7799995
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=178.01 Aligned_cols=270 Identities=16% Similarity=0.182 Sum_probs=219.7
Q ss_pred CCccceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeC--CCcEEEEeCCCCce
Q 009274 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSF--DKSIHVWSLKDFSH 284 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~--dg~i~iwd~~~~~~ 284 (538)
....+....++.++..+++...+..+++++. ..++-.|..++|. ...++.++. |.+||.-++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 3456788889999999999888878777763 3444567777776 666777766 89999999999999
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcE
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 364 (538)
++.|.||...|.++..+|-+ ..+++++.|++|++||++..++...+.. ...++.++.|+|-++|++.....|
T Consensus 93 lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCCeE
Confidence 99999999999999999966 6789999999999999997766555544 233477999999999999988899
Q ss_pred EEEECCCC--ceeEEec---CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCc-eEEEEEEcCCC
Q 009274 365 KAWSLLDG--TLSCTMS---GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA-VSSVLSLTAVQ 436 (538)
Q Consensus 365 ~iwd~~~~--~~~~~~~---~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 436 (538)
++||++.- .+-.++. +.....+.+.|+ +++++.+...+.+++.|.-+|..+.++..+.... .....++.||+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99999864 3444442 346778999999 5689999999999999999999998887664433 33346899999
Q ss_pred CEEEEEeCCCcEEEEeC--Ccceeeecc-ccceEEEEEeCCCEEEEEeCCCeEEEEecCCCe
Q 009274 437 HTLVVSHESGSIKVWRN--DKFMKSMQT-HKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 437 ~~l~~~~~dg~i~iwd~--~~~~~~~~~-h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+++++|+.||+|.+|+. +..+..+.+ +.+++.++.|+.++...++.+..+.+|=....+
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccc
Confidence 99999999999999995 456677777 788999999999988888889999999766443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-23 Score=180.26 Aligned_cols=257 Identities=18% Similarity=0.214 Sum_probs=197.9
Q ss_pred CCCCCccceeeeeccC-cceeEEeecCCeEEEEEeec-----------CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC
Q 009274 215 ENSDGADIDQARAAGG-VKDLVNGLSKGNVKFKDLQG-----------HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK 280 (538)
Q Consensus 215 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~-----------h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~ 280 (538)
.+++...|....|++. +..++.++.++.+++|+++. |.++|.+++|+ |..+++|+.|+.+++||+.
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 3456667888889884 44555899999999999764 89999999999 9999999999999999999
Q ss_pred CCceEEEEecCCcCeEEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee
Q 009274 281 DFSHVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359 (538)
Q Consensus 281 ~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 359 (538)
++ .+..+..|.++|.++.|.+.. ..+|++|+.|.+|+.||.+.......+.... .+.+...-...++++.
T Consensus 103 S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--------RvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 103 SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--------RVYAADVLYPMAVVAT 173 (347)
T ss_pred CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--------eeeehhccCceeEEEe
Confidence 98 556678899999999998643 3478999999999999998655443333211 2345555566899999
Q ss_pred CCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCC--ceeEEEecCCCC----c-e--
Q 009274 360 GDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH--SLLTVLEEDSSG----A-V-- 426 (538)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~----~-~-- 426 (538)
.+..|.+|+++++...... ..-+-.++||+.. .+..+.|+-+|.+.+..+..+ +.-.+++.|... . +
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 9999999999765432211 1123457888877 345699999999999999876 444556655421 1 2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEe--CCCEEEEE
Q 009274 427 SSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL--EGKWLFTG 480 (538)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 480 (538)
...++|+|....|++++.||++.+|| .+..++..+.|..+|++.+| +|.+++-+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 23368999999999999999999998 55677888899999999998 67766654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=195.37 Aligned_cols=253 Identities=16% Similarity=0.234 Sum_probs=199.4
Q ss_pred ecCCeEEEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC----------ceEEEEecCCcCeEEEEEecCC
Q 009274 238 LSKGNVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF----------SHVHTFKGHDHKVMAVVYVDED 304 (538)
Q Consensus 238 ~~~~~~~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~ 304 (538)
...+.+.+...-.|.+.|+.+.+. ...+++.+..+.|.|||..+. .+-..+.+|...-++++|++..
T Consensus 110 ~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 110 AVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred ccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc
Confidence 445677777778899999999987 778888999999999998532 2233788999988999999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCC----cceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECC--CCceeEE
Q 009274 305 QPLCISGDSGGGIFVWSFSFPLGH----EPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLL--DGTLSCT 377 (538)
Q Consensus 305 ~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~--~~~~~~~ 377 (538)
...+++++.|++|++||+...... .....+..+.. ... -++|++ +.+.+++++.|+.+.|||+| +.++...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHED-VVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCc-cee-hhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence 999999999999999999865542 22333333332 222 224554 45689999999999999999 5566777
Q ss_pred ecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 009274 378 MSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWR 452 (538)
Q Consensus 378 ~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd 452 (538)
..+|.++|+|++|+ +..||+||.|++|.+||+|+.+ ++.++..|. ..+.. +.|+|+ ...|++++.|+.+.+||
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-dev~~-V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-DEVFQ-VEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC-cceEE-EEeCCCCCceeEecccCCcEEEEe
Confidence 78999999999999 4589999999999999999865 567777664 44444 688886 46888999999999999
Q ss_pred CCc----------------ceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCC
Q 009274 453 NDK----------------FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 453 ~~~----------------~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
+.+ ++..-.||...|..++| ....|++.+.|+.+.||+....
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 542 23555789999999988 4568999999999999998754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=206.94 Aligned_cols=275 Identities=21% Similarity=0.368 Sum_probs=208.7
Q ss_pred cCCCcEE---EEEEc---CCEEEEEeCCCcEEEEeCCCCc------eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcE
Q 009274 250 GHRDCVT---GLAVG---GGFLFSSSFDKSIHVWSLKDFS------HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (538)
Q Consensus 250 ~h~~~V~---~l~~~---~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 317 (538)
.|...|. .+..+ +++|+|||.||.|++|+...-. ....++.|...|++++...+++ .+++++.|-+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTV 97 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTV 97 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceE
Confidence 4555555 44444 7789999999999999985321 3667888999999999876544 67999999999
Q ss_pred EEEEccCCCCCcceeeecccCCceeeeEEEE-eecCCEEEEeeCCCcEEEEECCCC--ceeE--------Eec-CCCCCe
Q 009274 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL-TTSGRYLYTGSGDRTIKAWSLLDG--TLSC--------TMS-GHKSAV 385 (538)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~i~iwd~~~~--~~~~--------~~~-~h~~~v 385 (538)
++|+..... .........|.+ +..+.+. ..+...+++|+-|+.|.+||++++ +.+. .+. ++..+|
T Consensus 98 K~W~~~~~~-~~c~stir~H~D--YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 98 KVWNAHKDN-TFCMSTIRTHKD--YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred EEeecccCc-chhHhhhhcccc--hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 999988653 233333344443 2223344 556779999999999999999977 2222 233 788999
Q ss_pred EEEEEeCC--EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeec
Q 009274 386 STLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQ 461 (538)
Q Consensus 386 ~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~ 461 (538)
++++.++. .+++|+..+.+++||.++.+.+..+.+|.. .+. ++-.++||..+++++.||+|++||++ .++.++.
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr-~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVR-VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceE-EEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 99999844 899999999999999999999999997754 333 36899999999999999999999976 5888999
Q ss_pred cccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC-eeEeeeecCCcccCCCceEEEEE--eCCEEEEEECCCeEEEEEc
Q 009274 462 THKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD-EFEEDVIPTGAIPCGSVITALLY--WQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 462 ~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~v~vw~~ 536 (538)
.|...|+++.. +=..+++|+.||.|+.=|+++. +....+....+ +..+.. .++.+-+++.|+.|+-|..
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daP------v~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAP------VLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCc------hhhhhhccccCCceeeeccccceecCC
Confidence 99999999865 6678999999999999999884 33333333322 222222 2455688889999998875
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=181.10 Aligned_cols=276 Identities=22% Similarity=0.350 Sum_probs=194.6
Q ss_pred ecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCc----------eEEE-----EecCCcCeEEEEEecCCCCEEEE
Q 009274 249 QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFS----------HVHT-----FKGHDHKVMAVVYVDEDQPLCIS 310 (538)
Q Consensus 249 ~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~----------~~~~-----~~~h~~~v~~l~~~~~~~~~l~s 310 (538)
..|.+.|+++.+. |+++++|+.||.|.+||+++.. .+.. -.+|.-.|.++.|.|-+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4588999999998 9999999999999999997532 1111 13588899999999999999999
Q ss_pred EcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee---cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEE
Q 009274 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT---SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVST 387 (538)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 387 (538)
++.|.++++||.++.+....++..... -..+++| ...++++|..|-.|++.|+.+|...+++.||.+.|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~V------YshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKV------YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEeecCcee------ehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 999999999999876544333221111 1123333 2348899999999999999999999999999999999
Q ss_pred EEEeCC---EEEEEecCCcEEEEECCCC-ceeEEEecC-------------CCCceEEEEEEcCCCCEEEEEeCCCcEEE
Q 009274 388 LAVCNG---VLYSGSRDGTIRLWSLSDH-SLLTVLEED-------------SSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (538)
Q Consensus 388 l~~~~~---~l~s~s~dg~i~iwd~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 450 (538)
+.|++. .|++|+.||.|++||++.. .+...+..+ +.+.+.. ++|..++.++++++.|..+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng-la~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG-LAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee-eeecccchhhhhccCccceEE
Confidence 999933 7899999999999999865 333333322 2233333 799999999999999999999
Q ss_pred EeCCcceeeecc-----ccceE-EE--E-EeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-
Q 009274 451 WRNDKFMKSMQT-----HKGSV-FA--V-FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG- 520 (538)
Q Consensus 451 wd~~~~~~~~~~-----h~~~v-~~--~-~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 520 (538)
|+..+...++.. |+..+ .. + +-+...++---.++.+.++++-.+......... ...+.+.++.++
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-----~k~i~c~~~~~~f 347 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-----LKRINCAAYRPDF 347 (397)
T ss_pred eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc-----cceeeEEeecCch
Confidence 985432222211 11110 00 1 123444444445577777777666554443322 224455555443
Q ss_pred -EEEEEECCCeEEEEEc
Q 009274 521 -KLFVGCADRTVKVYYY 536 (538)
Q Consensus 521 -~l~sg~~dg~v~vw~~ 536 (538)
..++|+.|+.|..|-.
T Consensus 348 q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhccccCCccccccc
Confidence 3889999999999853
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=194.43 Aligned_cols=285 Identities=18% Similarity=0.254 Sum_probs=199.2
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC----ceEEEEe-cCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----SHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
..|++|+..|+++++. |..|+|||.|.+|++||+... +..+.+. .....|.++.|++.++.+|+ .+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv-vsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV-VSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE-EecCccee
Confidence 4588999999999998 999999999999999998642 2222222 34567999999997776544 44457788
Q ss_pred EEEccCCCCC------cceeeecccCC-ceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCc-eeEEe-----cCCCCC
Q 009274 319 VWSFSFPLGH------EPLKKWNEEKD-WRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGT-LSCTM-----SGHKSA 384 (538)
Q Consensus 319 vwd~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~-~~~~~-----~~h~~~ 384 (538)
++|-...... ..+......++ .....+.+|+|..+ .+++++.||++++||++..+ ....+ .+..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 8875532211 11211111111 12223446777654 89999999999999997653 22233 233457
Q ss_pred eEEEEEe--CCEEEEEecCCcEEEEECCCCc--eeE-EEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceee
Q 009274 385 VSTLAVC--NGVLYSGSRDGTIRLWSLSDHS--LLT-VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKS 459 (538)
Q Consensus 385 v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 459 (538)
+++.+|+ +..+++|+.||.|.+|+..... +.. .-..|..+.-.+++.|+++|++|++-+.|+++++||+++..+.
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 8899999 5589999999999999986543 223 3334545555666899999999999999999999998764443
Q ss_pred e---cc----ccceEEEEEeCCCEEEEEeC------CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEE
Q 009274 460 M---QT----HKGSVFAVFLEGKWLFTGGW------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVG 525 (538)
Q Consensus 460 ~---~~----h~~~v~~~~~~~~~l~sgs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg 525 (538)
+ .+ ....=.|++|+.++|++|+. .|++.+||..+.......... ..+++.+.+.+ =+++++|
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----TASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----CceEEEEeecchhhheeee
Confidence 3 22 22233456679999999873 478999999887765544432 44566666666 5679999
Q ss_pred ECCCeEEEEE
Q 009274 526 CADRTVKVYY 535 (538)
Q Consensus 526 ~~dg~v~vw~ 535 (538)
+.||.++++-
T Consensus 476 sgdG~~~vyY 485 (641)
T KOG0772|consen 476 SGDGTAHVYY 485 (641)
T ss_pred cCCCceEEEE
Confidence 9999999873
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-24 Score=196.19 Aligned_cols=274 Identities=18% Similarity=0.322 Sum_probs=211.1
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC---CceEEEEec--CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD---FSHVHTFKG--HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
.|.+-|.++.++ .++++||+ .|.|+|||+.. ..++..+.. ....|.++..+|++. .|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence 588888899998 78899987 67899999853 223333332 456788888888665 5577888999999999
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR 400 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~ 400 (538)
..+........-.. ...+..++++||.+..++++.||.|.|||+.+...++.|++|.+.+.||.++ +..|-+|+-
T Consensus 495 AapTprikaeltss---apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 495 AAPTPRIKAELTSS---APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred cCCCcchhhhcCCc---chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 87643222111110 0122345788999999999999999999999999999999999999999999 559999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeeccccceEEEEEe--CCCEE
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EGKWL 477 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~--~~~~l 477 (538)
|+++|.||+++++.+...... ..+. .+..+|++.++++|-.++.+.+....+ ....+..|.+.|.++.| .|+++
T Consensus 572 DntvRcWDlregrqlqqhdF~--SQIf-SLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHDFS--SQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ccceeehhhhhhhhhhhhhhh--hhhe-ecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence 999999999998876554432 2233 368899999999999999999988554 55677889999999988 89999
Q ss_pred EEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEE-EEEeCCEEEEEECCCeEEEEEc
Q 009274 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA-LLYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~sg~~dg~v~vw~~ 536 (538)
++.+.|+.+..|...-+........ ..++.+| +.++|.++++|+.|..-.||.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE-----~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKE-----SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeeccc-----cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999877765444332 2233443 3334566888999998888875
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-21 Score=163.78 Aligned_cols=264 Identities=19% Similarity=0.240 Sum_probs=200.2
Q ss_pred cceeeeeccCcceeEEeecCCeEEEE------------------------EeecCCCcEEEEEEc--CCEEEEEeCCCcE
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFK------------------------DLQGHRDCVTGLAVG--GGFLFSSSFDKSI 274 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~------------------------~l~~h~~~V~~l~~~--~~~l~s~s~dg~i 274 (538)
.+..+.+.+.+..++.++.....++- .-+.|.+.|.|.+|+ |+++++|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 35556666666666666554444433 335689999999999 9999999999999
Q ss_pred EEEeCCCCce-----EEEEecCCcCeEEEEEecC---CCCEEEEEc-CCCcEEEEEccCCCCCcceeeecccCCceeeeE
Q 009274 275 HVWSLKDFSH-----VHTFKGHDHKVMAVVYVDE---DQPLCISGD-SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI 345 (538)
Q Consensus 275 ~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 345 (538)
++...+...+ -..+.-|.+.|..++|..+ ++.++++++ .|..|++-|..++.....+. .+.. +. .
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s---ghtg-hi--l 187 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS---GHTG-HI--L 187 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec---CCcc-cE--E
Confidence 9976643222 2456789999999999743 455777765 47788888877665444433 3332 11 2
Q ss_pred EEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC--C-----CCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeE
Q 009274 346 HALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG--H-----KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLT 416 (538)
Q Consensus 346 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h-----~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 416 (538)
.-.++++-.+++|+.|.+|++||++-..++.++.. | .+.|.+++.. +.+|++|-.|....+||++.++.++
T Consensus 188 alyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 188 ALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred EEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 24577899999999999999999998888887632 2 3578888887 6799999999999999999999999
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEE
Q 009274 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488 (538)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~i 488 (538)
.+..|.. .+.+ +.|+|...++++++.|..|++-|+.. ++.....|...+..+.| ..-.+++.+.|.++.+
T Consensus 268 ~f~phsa-dir~-vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 268 RFHPHSA-DIRC-VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeCCCcc-ceeE-EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 9987643 3343 69999999999999999999999542 34445668888888877 5667899999999999
Q ss_pred EecC
Q 009274 489 QELA 492 (538)
Q Consensus 489 wd~~ 492 (538)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=187.71 Aligned_cols=238 Identities=16% Similarity=0.278 Sum_probs=185.9
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
+....+.|.+++|. |+++++|...|.|+|+|..+...+..+.+|+.+|..+.|+|.++.++++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 44567899999997 9999999999999999988777888999999999999999999999999999999999999876
Q ss_pred CCCcceeeecccCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe-C-CEEEEEecC
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC-N-GVLYSGSRD 401 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~-~-~~l~s~s~d 401 (538)
.. ......+.+ +..+.+++|. +..+++|+.||.|++||+++. ..+.++. |..+|..+.+- + ..+++++ .
T Consensus 144 ~v---~~~l~~htD--YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-G 216 (487)
T KOG0310|consen 144 YV---QAELSGHTD--YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-G 216 (487)
T ss_pred EE---EEEecCCcc--eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-C
Confidence 52 223333333 3334456664 449999999999999999987 5666665 99999999988 3 4666665 5
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEE--eCCCEE
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVF--LEGKWL 477 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~--~~~~~l 477 (538)
..+++||+-+|.........|...+ +++.+..++..|++|+-|+.+++||+.+ .+..+. ..++|.+++ ++++.+
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtV-TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTV-TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTV 294 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceE-EEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceE
Confidence 6899999996655444333233333 4478888999999999999999999654 333333 457887765 488999
Q ss_pred EEEeCCCeEEEEecCCC
Q 009274 478 FTGGWDKTVSVQELAGD 494 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~~~ 494 (538)
+.|..||.+.+=+...+
T Consensus 295 viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 295 VIGMSNGLVSIRRREVK 311 (487)
T ss_pred EEecccceeeeehhhcc
Confidence 99999999887755433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=184.31 Aligned_cols=273 Identities=20% Similarity=0.309 Sum_probs=210.6
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
..|+++... .+.++||+.|..+.++|..+.+.+.+++||...|+.+.++++ ...+++++.|..|++|..........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccc
Confidence 456777776 489999999999999999999999999999999999999984 55779999999999999876554433
Q ss_pred eeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC--CCCCeEEEEEe-CC-EEEEEecCCcEEE
Q 009274 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC-NG-VLYSGSRDGTIRL 406 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~-~~-~l~s~s~dg~i~i 406 (538)
....... ......++.|.||++++.||+..+.|++++..+..... ..-.+++.+|+ ++ .+.+|..|+.+++
T Consensus 299 ~~~h~~~-----V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 299 SRPHEEP-----VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ccccccc-----ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 3332221 12347788999999999999999999999998776643 23458999999 44 7788999999999
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcce--eeecc-ccceEEEEEe--CCCEEEEEe
Q 009274 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM--KSMQT-HKGSVFAVFL--EGKWLFTGG 481 (538)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-h~~~v~~~~~--~~~~l~sgs 481 (538)
||+.++..+..|.+| .+.+.. +.|+.||-+|++++.|+.|++||+++.. +++.. ....+.+++| .|.+|+.++
T Consensus 374 wdlks~~~~a~Fpgh-t~~vk~-i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGH-TGPVKA-ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEcCCccccccCCCC-CCceeE-EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 999999999999885 566665 6999999999999999999999988743 33332 2236777877 789999998
Q ss_pred CCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe--CCEEEEEECCCeEEEEEc
Q 009274 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 482 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~v~vw~~ 536 (538)
.|=.|++++-.+.......... .+....+.+.+. ...+++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELA---DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccccceeeehhh---hcccccceeeecccceEEeeccchhheEEeec
Confidence 8877777775554432221111 133355666665 334778999999998865
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=176.10 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=175.7
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC---ceEEEEecCCcCeEEEEEec-CCCCEEEEEcCCCcEEEEE
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVD-EDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd 321 (538)
..+|++.|..+..+ |++|+|++.|++|+|+.+.+. +.+.++.+|.++|..++|.. .-
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~----------------- 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKF----------------- 69 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccccc-----------------
Confidence 45799999887766 999999999999999998653 56889999999999999953 22
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEeC----CEE
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVCN----GVL 395 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~----~~l 395 (538)
|.+|++++.||.|.||.-.+++ .......|...|++++|.+ -.|
T Consensus 70 ------------------------------G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~L 119 (299)
T KOG1332|consen 70 ------------------------------GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLL 119 (299)
T ss_pred ------------------------------CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEE
Confidence 5567777777777777766553 3445678999999999982 389
Q ss_pred EEEecCCcEEEEECCCC--ceeEEEecCCCCceEEEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCc----
Q 009274 396 YSGSRDGTIRLWSLSDH--SLLTVLEEDSSGAVSSVLSLTAV---Q-----------HTLVVSHESGSIKVWRNDK---- 455 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~l~~~~~dg~i~iwd~~~---- 455 (538)
++++.||.|.+.+.++. -....+...|.-.+.+ +++.|- | +.|++|+.|+.|+||+...
T Consensus 120 acasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns-Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 120 ACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS-VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK 198 (299)
T ss_pred EEeeCCCcEEEEEEcCCCCccchhhhhccccccce-eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence 99999999999998764 2223333333333444 466654 3 5699999999999998543
Q ss_pred ceeeeccccceEEEEEe------CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe--CCEEEEEEC
Q 009274 456 FMKSMQTHKGSVFAVFL------EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCA 527 (538)
Q Consensus 456 ~~~~~~~h~~~v~~~~~------~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~ 527 (538)
..+++.+|.+.|+.+++ -..+|+++|.||+|.||................+ ..++..+.|+ ++.|++++.
T Consensus 199 ~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 199 LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecC
Confidence 45568999999998876 3458999999999999988743222222222222 2244444444 566788999
Q ss_pred CCeEEEEEc
Q 009274 528 DRTVKVYYY 536 (538)
Q Consensus 528 dg~v~vw~~ 536 (538)
|+.|.+|+=
T Consensus 277 dNkvtlwke 285 (299)
T KOG1332|consen 277 DNKVTLWKE 285 (299)
T ss_pred CcEEEEEEe
Confidence 999999974
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=179.46 Aligned_cols=242 Identities=19% Similarity=0.322 Sum_probs=193.8
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC------C----------------------------------
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK------D---------------------------------- 281 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~------~---------------------------------- 281 (538)
++.++.||.+.|+|+.|+ +.++++++.|++..||... .
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 445578999999999999 8999999999999999621 0
Q ss_pred CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC
Q 009274 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361 (538)
Q Consensus 282 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 361 (538)
..++..+.+|...|.+..|.. ++..+++++.|.+..+||++++.....+....... .-++-+|..+++++.+.|
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL-----tHcstHptQrLVvTsSrD 335 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL-----THCSTHPTQRLVVTSSRD 335 (481)
T ss_pred eeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhc-----cccccCCcceEEEEeccC
Confidence 123566789999999999987 55567999999999999999887666655443322 234667778899999999
Q ss_pred CcEEEEECCCC-ceeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCE
Q 009274 362 RTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 362 g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
.+.++||++.. ..+..|.||...|+++.|. +..+++|+.|.+|++||+++.. ++.++..... +. .++++..+..
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~--~N-Rvavs~g~~i 412 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP--AN-RVAVSKGHPI 412 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCc--cc-eeEeecCCce
Confidence 99999999843 4567889999999999999 8899999999999999999865 5677765433 22 2577777888
Q ss_pred EEEEeCCCcEEEEeCCc------ceeeeccccceEEEEEe-CC---CEEEEEeCCCeEEEEecCCC
Q 009274 439 LVVSHESGSIKVWRNDK------FMKSMQTHKGSVFAVFL-EG---KWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 439 l~~~~~dg~i~iwd~~~------~~~~~~~h~~~v~~~~~-~~---~~l~sgs~dg~v~iwd~~~~ 494 (538)
|+.-..+..|++||+.. +...-++|...|.|++| +. .-|++++.|..+.-|++...
T Consensus 413 IAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999999999999542 33355789999999998 22 35889999999999998754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=185.21 Aligned_cols=231 Identities=23% Similarity=0.396 Sum_probs=179.4
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (538)
+|.+.|.+++.+ +++|++|+.|..|.||+.++.+.++.+++|.+.|.+++|-. +..-+++++.|+++++|+++...
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s- 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS- 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-
Confidence 799999999998 99999999999999999999999999999999999999965 56667999999999999997543
Q ss_pred CcceeeecccCCceeeeEEEEee--cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEecCCcE
Q 009274 328 HEPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTI 404 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i 404 (538)
.+..+..|+. .+..++. -++.+-+|+.|+++++|++. .+....+.+|.+.+-|++|- +..+++||.||.|
T Consensus 278 --~vetlyGHqd----~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 278 --YVETLYGHQD----GVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSI 350 (479)
T ss_pred --HHHHHhCCcc----ceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceE
Confidence 3333344433 2334433 24566677799999999994 34445678899999999998 7799999999999
Q ss_pred EEEECCCCceeEEEecCCC---C-------ceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc------eeeeccccceEE
Q 009274 405 RLWSLSDHSLLTVLEEDSS---G-------AVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF------MKSMQTHKGSVF 468 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~h~~~v~ 468 (538)
.+|++...+++.+....|. . ...+.++..|..+++++|+.+|.|++|.+..- +..+. -.+.|+
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVN 429 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVN 429 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEE
Confidence 9999999999887765432 1 03344678899999999999999999985542 33333 567888
Q ss_pred EEEe--CCCEEEEE-eCCCeEEEEe
Q 009274 469 AVFL--EGKWLFTG-GWDKTVSVQE 490 (538)
Q Consensus 469 ~~~~--~~~~l~sg-s~dg~v~iwd 490 (538)
+++| +|+.+++| +....+-=|-
T Consensus 430 sl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEccCCCEEEEecccccccceee
Confidence 8887 78855554 4444444443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=180.55 Aligned_cols=269 Identities=17% Similarity=0.202 Sum_probs=203.2
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------------------------eecCCCcEEEEEEc--CCEEEEEeC
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------------------------LQGHRDCVTGLAVG--GGFLFSSSF 270 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------------------------l~~h~~~V~~l~~~--~~~l~s~s~ 270 (538)
.+...+.+++++..+++|+.+..+++.+ |-.|.++|+++.|+ ...|++|+.
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC
Confidence 4466788888888898988888777665 34588999999999 889999999
Q ss_pred CCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEE
Q 009274 271 DKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL 348 (538)
Q Consensus 271 dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (538)
|++|+++|+......+.++ ....+|.++.|+|.++ +++.|..-.++++||+++.++-........+. .....+..
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht--~ai~~V~Y 269 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT--GAITQVRY 269 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccc--cceeEEEe
Confidence 9999999987543332222 2457899999999555 77889999999999998765432222111111 12223456
Q ss_pred eecCCEEEEeeCCCcEEEEECCCCceeEEe-cCCC-CCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCC-
Q 009274 349 TTSGRYLYTGSGDRTIKAWSLLDGTLSCTM-SGHK-SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS- 423 (538)
Q Consensus 349 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~-~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~- 423 (538)
++.+++.++|+.||.|++||--+++++.++ +.|. ..|.+..|. ++++++.+.|..+++|.+.+++.+..+.+...
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t 349 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT 349 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc
Confidence 677889999999999999999999999988 4565 468888888 56999999999999999999999998876421
Q ss_pred --CceEEEEEEcCCCCEEEEEeC-CCcEEEEeCCcc---eeeeccccceEEEEE--eCCCEEEEEeCCCeEEEEec
Q 009274 424 --GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKF---MKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 424 --~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~---~~~~~~h~~~v~~~~--~~~~~l~sgs~dg~v~iwd~ 491 (538)
.....-..|+....+++.-.+ .+.+.-||.++. ...-.+|.+.+..+. |.+.-+++++.|-.+|+|--
T Consensus 350 grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 350 GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 111122356666677666543 578999996642 223357999999884 58899999999999999964
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-23 Score=188.03 Aligned_cols=241 Identities=17% Similarity=0.280 Sum_probs=180.5
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee-------eecccCCceeeeEEEEeecCC-EEEEeeCC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK-------KWNEEKDWRYSGIHALTTSGR-YLYTGSGD 361 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~l~sg~~d 361 (538)
.|.+.|+.+.+.|++..++++.+..+.+.|||........... .+..+... ...+++++... .+++|+.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--ccccccccccceeEeeccCC
Confidence 4999999999999999999999999999999987543332211 22222221 11235555433 89999999
Q ss_pred CcEEEEECCCCc-------eeEEecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCC--CceeEEEecCCCCceEEE
Q 009274 362 RTIKAWSLLDGT-------LSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSD--HSLLTVLEEDSSGAVSSV 429 (538)
Q Consensus 362 g~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 429 (538)
++|.+||+.... +...+.+|...|..++|+ .+++++++.|+.+.|||+|+ .++......| .+.+.+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-~~~vn~- 277 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-SAEVNC- 277 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc-CCceeE-
Confidence 999999997532 345678999999999999 56999999999999999995 4444444444 455555
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCc---ceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCee------
Q 009274 430 LSLTA-VQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEF------ 496 (538)
Q Consensus 430 ~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~------ 496 (538)
++|+| ++..||+|+.|++|.+||+++ ++.++.+|...|.++.| ....|++++.|+.+.+||+..-..
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 68877 567888999999999999664 67788999999999987 678999999999999999964221
Q ss_pred ------EeeeecCCcccCCCceEEEEEeCC---EEEEEECCCeEEEEEcC
Q 009274 497 ------EEDVIPTGAIPCGSVITALLYWQG---KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 497 ------~~~~~~~~~~~~~~~~~~~~~~~~---~l~sg~~dg~v~vw~~~ 537 (538)
...+.|.+ |...+..+.|... .+++.+.|+.++||++.
T Consensus 358 a~dgppEllF~HgG---H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 358 AEDGPPELLFIHGG---HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hccCCcceeEEecC---cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 12233333 3444555555533 37789999999999975
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=183.64 Aligned_cols=293 Identities=11% Similarity=0.211 Sum_probs=225.0
Q ss_pred cCCeEEEEEee----c--CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC--CceEEEEecCCcCeEEEEEecCCCCEE
Q 009274 239 SKGNVKFKDLQ----G--HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDEDQPLC 308 (538)
Q Consensus 239 ~~~~~~i~~l~----~--h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l 308 (538)
+.+.+.+..++ + -.+.|+++.|+ ...+++|+.||+++||.++. ...++.+.-...+|.+..|.|++...+
T Consensus 194 p~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 194 PPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred CCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEE
Confidence 44555555443 2 24789999999 78999999999999998853 345666666778999999999888788
Q ss_pred EEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEE
Q 009274 309 ISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388 (538)
Q Consensus 309 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 388 (538)
++++....++.||+.+.+..+.-. ..... .....-..+++++++|+..+..|.|.+....+++.+.+++ -.+.|..+
T Consensus 274 ~~s~rrky~ysyDle~ak~~k~~~-~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTKLKP-PYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred EecccceEEEEeeccccccccccC-CCCcc-cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 999999999999998765433222 22221 1222345788999999999999999999999999999887 57889999
Q ss_pred EEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--------ccee
Q 009274 389 AVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--------KFMK 458 (538)
Q Consensus 389 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------~~~~ 458 (538)
+|+ +..|++++.+|.|.+||++...+++++.... +.....++.++++.++|+|+..|.|.|||.. +++.
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 998 5588888899999999999999999987653 3334447899999999999999999999843 4566
Q ss_pred eeccccceEEEEEe--CCCEEEEEeC--CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e-CCEEEEEECCCeEE
Q 009274 459 SMQTHKGSVFAVFL--EGKWLFTGGW--DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W-QGKLFVGCADRTVK 532 (538)
Q Consensus 459 ~~~~h~~~v~~~~~--~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~sg~~dg~v~ 532 (538)
.+..-...|.++.| |.+.|+.+|. +..+|+-.+.+........... .+.+ .++++.+ | .|.|+.|..+|.|.
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n-~~vg-~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN-TKVG-HVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC-Cccc-ceEEEEecCCCceEEeecCCCcee
Confidence 66667778888888 7888877774 5789998887766544333321 1122 3455544 5 67788999999999
Q ss_pred EEEcC
Q 009274 533 VYYYG 537 (538)
Q Consensus 533 vw~~~ 537 (538)
+|++.
T Consensus 508 l~kL~ 512 (514)
T KOG2055|consen 508 LFKLH 512 (514)
T ss_pred eEeec
Confidence 99974
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-22 Score=170.05 Aligned_cols=227 Identities=17% Similarity=0.221 Sum_probs=173.6
Q ss_pred ceeeeeccCcceeEEeecCCe---------EEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 009274 222 IDQARAAGGVKDLVNGLSKGN---------VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~---------~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 290 (538)
+.++....++..+.+...+.. .++-++.||+++|+|++.+ .++++||+.|.++++||+++|+++..++
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k- 91 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK- 91 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-
Confidence 555556566666665555444 4455689999999999998 8999999999999999999999999988
Q ss_pred CCcCeEEEEEecCCCCEEEEEc----CCCcEEEEEccCCC----CCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC
Q 009274 291 HDHKVMAVVYVDEDQPLCISGD----SGGGIFVWSFSFPL----GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~----~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 362 (538)
...+|..+.|+.++...+++.. ..+.|.++|++... ...++.....+. ......-|.+-+++|++|..||
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCC
Confidence 5578999999997766555543 45789999998543 222232222222 2233456788899999999999
Q ss_pred cEEEEECCCCc-eeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecC------------------
Q 009274 363 TIKAWSLLDGT-LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEED------------------ 421 (538)
Q Consensus 363 ~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------ 421 (538)
.|..||+++++ .+..-..|...|+.+.++ ..+++++|.|.+-++||.++.+.++++...
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEec
Confidence 99999999985 455667899999999999 449999999999999999887666554321
Q ss_pred ------------------------------------CCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 422 ------------------------------------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 422 ------------------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
|-+++.+ ++++|+|+..++|++||.|++.-
T Consensus 250 GGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs-vAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 250 GGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS-VAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred CCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce-eEECCCCcccccCCCCceEEEEE
Confidence 1233333 69999999999999999999874
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=192.12 Aligned_cols=263 Identities=18% Similarity=0.254 Sum_probs=193.0
Q ss_pred ceeEEeecCCeEEEEE---------------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEE--EecCC
Q 009274 232 KDLVNGLSKGNVKFKD---------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT--FKGHD 292 (538)
Q Consensus 232 ~~~~~~~~~~~~~i~~---------------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~ 292 (538)
..++.+..+|.+.+++ ...|..+|..+.|- ...|++++.|.++++||+++.++... +.+|.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 4455555566555543 45799999999998 67899999999999999999988876 88999
Q ss_pred cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC--------------------c----ceeeecccCCceeeeEE-E
Q 009274 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH--------------------E----PLKKWNEEKDWRYSGIH-A 347 (538)
Q Consensus 293 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--------------------~----~~~~~~~~~~~~~~~~~-~ 347 (538)
..|.+++|.+.+...|++|+.||.|.|||++-.... . .+..+..+.......+. -
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 999999999999999999999999999998743200 0 01111111111111122 3
Q ss_pred EeecCCEEEEeeC-CCcEEEEECCCCceeEE--------ecCC---CCCeEEEEEe--CCEEEEEecCCcEEEEECCCCc
Q 009274 348 LTTSGRYLYTGSG-DRTIKAWSLLDGTLSCT--------MSGH---KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS 413 (538)
Q Consensus 348 ~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~--------~~~h---~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~ 413 (538)
+..|...|++++. |+.|++||++....... +..| .-.+.++..+ +.+|++.+.|++|++||+.+..
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 3457778999888 99999999987543322 2223 2245566665 6788888889999999998754
Q ss_pred --eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc---ceeeeccccceEEEEEe---CCCEEEEEeCCCe
Q 009274 414 --LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKT 485 (538)
Q Consensus 414 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~ 485 (538)
++..+.++........-..+|++.++++|+.|...++|.+.+ ....+.+|...|+++.| .-.-+++++.|.+
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 344454443333333357899999999999999999998665 45567899999999988 4445777799999
Q ss_pred EEEEecCCC
Q 009274 486 VSVQELAGD 494 (538)
Q Consensus 486 v~iwd~~~~ 494 (538)
+++|++..+
T Consensus 385 ~kiW~l~~~ 393 (720)
T KOG0321|consen 385 VKIWRLSNG 393 (720)
T ss_pred eEEEeccCc
Confidence 999999654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-22 Score=190.19 Aligned_cols=305 Identities=20% Similarity=0.285 Sum_probs=217.3
Q ss_pred ccCcceeEEeecCCeEEEEEee----------cC--------------C-----C----cEEEEEEc--CCEEEEEeCCC
Q 009274 228 AGGVKDLVNGLSKGNVKFKDLQ----------GH--------------R-----D----CVTGLAVG--GGFLFSSSFDK 272 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~i~~l~----------~h--------------~-----~----~V~~l~~~--~~~l~s~s~dg 272 (538)
......++.+..+|.+++++-. .| . . ..-++.|+ .+.+.....|.
T Consensus 267 cVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndh 346 (1080)
T KOG1408|consen 267 CVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDH 346 (1080)
T ss_pred eeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCc
Confidence 3456778888899999887621 11 0 0 11244566 78899999999
Q ss_pred cEEEEeCCCCceE---EEEecCCcCeEEEEEecCC----------CCEEEEEcCCCcEEEEEccCCCCCcceee------
Q 009274 273 SIHVWSLKDFSHV---HTFKGHDHKVMAVVYVDED----------QPLCISGDSGGGIFVWSFSFPLGHEPLKK------ 333 (538)
Q Consensus 273 ~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~----------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------ 333 (538)
.++|||+.+-+.+ ..+-.|...|+++.-.|.+ ...|++++.|++|++||+...........
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 9999999764432 3344588888888766511 23589999999999999986322111100
Q ss_pred ----ecc----------------------cCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEE
Q 009274 334 ----WNE----------------------EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVST 387 (538)
Q Consensus 334 ----~~~----------------------~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 387 (538)
... -....-....+++|++++|++|..-|++++||+.+.+....+..|...|.|
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence 000 000112235689999999999999999999999999888899999999999
Q ss_pred EEEe-----CCEEEEEecCCcEEEEECCCC-ceeEEEecCCC--------------------------------------
Q 009274 388 LAVC-----NGVLYSGSRDGTIRLWSLSDH-SLLTVLEEDSS-------------------------------------- 423 (538)
Q Consensus 388 l~~~-----~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~-------------------------------------- 423 (538)
+.|+ .++|++++.|+.|+++|+... .+++++..|..
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 9999 348999999999999998632 11221111100
Q ss_pred ---------CceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccceeeecc---ccceEEEE--EeCCCEEEEEeCCCeEE
Q 009274 424 ---------GAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQT---HKGSVFAV--FLEGKWLFTGGWDKTVS 487 (538)
Q Consensus 424 ---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~---h~~~v~~~--~~~~~~l~sgs~dg~v~ 487 (538)
.....-+...|+.+++++++.|+.|+|||+ ++..+.+++ |.+....+ .|.|.|+++...|.++.
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 001112567788899999999999999995 456667765 55555544 56899999999999999
Q ss_pred EEecCCCeeEeeeecCCcccCCCceEEEEEeCC--EEEEEECCCeEEEEEcC
Q 009274 488 VQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 488 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~~dg~v~vw~~~ 537 (538)
++|..++++...... |+..++.+.|.++ +|++.+.||.|.||++.
T Consensus 667 ~~Df~sgEcvA~m~G-----HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTG-----HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EEEeccchhhhhhcC-----cchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999988665543 4446666655533 49999999999999974
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=169.18 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=198.9
Q ss_pred CCCCccceeeeeccCcceeEEeecCCeEEEEEee--------cCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ--------GHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--------~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
+++...|..+.+++....++.++.+|.+++++.. .|..++.+++|. ...+++|+.||.|+.+|+++++...
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCccee
Confidence 4445568889999999999999999999999854 489999999999 8899999999999999999876654
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEE
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~i 366 (538)
+..|..+|.++.+++ ....+++|+.|++|++||.+........ ... ..+.+++..++.|++|+.|..+.+
T Consensus 90 -igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~---d~~-----kkVy~~~v~g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTF---DQG-----KKVYCMDVSGNRLVVGTSDRKVLI 159 (323)
T ss_pred -eccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccc---ccC-----ceEEEEeccCCEEEEeecCceEEE
Confidence 456999999999987 4557799999999999998853222211 111 147788889999999999999999
Q ss_pred EECCCCceeEEe--cCCCCCeEEEEEeC--CEEEEEecCCcEEEEECCCC----ceeEEEecCCC-------CceEEEEE
Q 009274 367 WSLLDGTLSCTM--SGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDH----SLLTVLEEDSS-------GAVSSVLS 431 (538)
Q Consensus 367 wd~~~~~~~~~~--~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~~~~~~ 431 (538)
||+++....... ..-+-.+.|+++.+ .=.++++-||.|.+=.+... +....++.|.. ......++
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 999987654422 22345688888873 46788889999988766655 33344444421 11233479
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeC
Q 009274 432 LTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGW 482 (538)
Q Consensus 432 ~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~ 482 (538)
|+|-...|++|+.||.|.+||. ++.+..+......|.+++| +|..||.++.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999995 4556666666677888888 8999999874
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=172.36 Aligned_cols=222 Identities=24% Similarity=0.329 Sum_probs=162.3
Q ss_pred ccCcceeEEeecCCeEEE------------EEeecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCce--EEEEe
Q 009274 228 AGGVKDLVNGLSKGNVKF------------KDLQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSH--VHTFK 289 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~i------------~~l~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~--~~~~~ 289 (538)
.-.+.++++.++++.+++ .+|.||.+||+.++|. |.+||++++||.|.||.-++++- .....
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~ 99 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA 99 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhh
Confidence 344555666666555554 4588999999999997 99999999999999999887743 44566
Q ss_pred cCCcCeEEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeec---C-----------CE
Q 009274 290 GHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS---G-----------RY 354 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~ 354 (538)
.|...|++++|.|.+ +.+|++++.||.|.+.+++....-...+....|. .-.. ..++.|. | +.
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~-~Gvn-sVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE-IGVN-SVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-cccc-eeeecCcCCCccccccCcccccce
Confidence 899999999999864 4567889999999999998662222222212211 1111 1233332 2 47
Q ss_pred EEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEeC------CEEEEEecCCcEEEEECCCCce--eEEEecCCCC
Q 009274 355 LYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVCN------GVLYSGSRDGTIRLWSLSDHSL--LTVLEEDSSG 424 (538)
Q Consensus 355 l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~ 424 (538)
|++|+.|..|+||+..+++ ...++.+|.+.|+.++|.+ .++++|+.||++.||..+.... ..++....+.
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~ 257 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD 257 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc
Confidence 9999999999999998763 4456899999999999983 2899999999999998763211 2222222233
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 425 AVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
.... ++|+..|+.|++++.|+.+.+|.
T Consensus 258 ~~w~-vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 258 VVWR-VSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ceEE-EEEeccccEEEEecCCcEEEEEE
Confidence 3343 69999999999999999999996
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=189.11 Aligned_cols=265 Identities=18% Similarity=0.249 Sum_probs=201.2
Q ss_pred EEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecc
Q 009274 258 LAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE 336 (538)
Q Consensus 258 l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 336 (538)
+.|+ .+.++.|. ...|++|+..+++.......+...|+++.|+++ +.+|+.|..+|.|.|||..+.+....+...
T Consensus 183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-- 258 (484)
T KOG0305|consen 183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-- 258 (484)
T ss_pred hhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccccCC--
Confidence 4566 66777775 558999999999877776667899999999985 457799999999999999876555444432
Q ss_pred cCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCc
Q 009274 337 EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS 413 (538)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~ 413 (538)
+...+.++++++..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+ +.++++|+.|+.+.|||....+
T Consensus 259 ----h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 259 ----HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred ----cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 2334668888899999999999999999998876555 88999999999999 6699999999999999998888
Q ss_pred eeEEEecCCCCceEEEEEEcCC-CCEEEEEe--CCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEE--EeCCC
Q 009274 414 LLTVLEEDSSGAVSSVLSLTAV-QHTLVVSH--ESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFT--GGWDK 484 (538)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~--~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~s--gs~dg 484 (538)
++..+..|. ..+.. ++|+|- ..+||+|+ .|++|++||... .+..+. -.+.|.++.| ..+-|++ |-.++
T Consensus 335 p~~~~~~H~-aAVKA-~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 335 PKFTFTEHT-AAVKA-LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred ccEEEeccc-eeeeE-eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 888887764 44444 677774 56888865 599999999653 333332 3467888888 3333444 33577
Q ss_pred eEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEEEcC
Q 009274 485 TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 485 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~~~ 537 (538)
.|.||+..+.+....+... ...+.....+||+ .+++|+.|.++++|++-
T Consensus 412 ~i~lw~~ps~~~~~~l~gH----~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGH----TSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred cEEEEeccccceeeeecCC----cceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 8999999886654443321 3335555566665 48899999999999873
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=203.89 Aligned_cols=232 Identities=16% Similarity=0.281 Sum_probs=182.6
Q ss_pred EEEEEEc---CCEEEEEeCCCcEEEEeCCC---CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 255 VTGLAVG---GGFLFSSSFDKSIHVWSLKD---FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 255 V~~l~~~---~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
+..+.|+ .++|||++..|.|.+||+.. .+.+..|..|+..++++.|++...+++++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 3445666 89999999999999999986 56677889999999999999999999999999999999999977665
Q ss_pred cceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--CCEEEEEecCCcE
Q 009274 329 EPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 404 (538)
........ ... -+.|+| .+++++++.+.|.+.+||++.. ++...+.+|.++|.|+.|+ ..+|++|+.|+.|
T Consensus 170 ~t~~~nSE----SiR-DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 170 STFRSNSE----SIR-DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ccccccch----hhh-ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 55544111 111 235555 4669999999999999999864 5677889999999999999 4499999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCC-EEEEEe--CCCcEEEEeCCc---ceeeeccccceEEEEEe---CCC
Q 009274 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSH--ESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGK 475 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~---~~~ 475 (538)
+|||+.+++.......+....+. .+.|-|... .|++++ .|-.|+|||++. +..++..|...++.++| |..
T Consensus 245 kiWd~t~~~~~~~~tInTiapv~-rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTINTIAPVG-RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred EEEeccCCCccceeEEeecceee-eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 99999876654333333233334 468888754 566554 478899999876 56788889999999999 456
Q ss_pred EEEEEeCCCeEEEEecC
Q 009274 476 WLFTGGWDKTVSVQELA 492 (538)
Q Consensus 476 ~l~sgs~dg~v~iwd~~ 492 (538)
.+.+++.||+|..-.++
T Consensus 324 ~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeEeecCccHHHHhhhh
Confidence 89999999988655444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=165.06 Aligned_cols=251 Identities=15% Similarity=0.150 Sum_probs=198.8
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEEe-----------ecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEE
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHT 287 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~l-----------~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~ 287 (538)
+..+....++.+++.+..++.+.+|++ .||.+.|-.++|+ .+.+++++.|.+|++||+..+++...
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 556777788889999999999999885 5799999999998 89999999999999999999999998
Q ss_pred EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEE
Q 009274 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (538)
Q Consensus 288 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iw 367 (538)
.....+. .-+.|+|+++ +++.++.|..|...|.++.+.....+...... -.++..++++++.....|.|.|.
T Consensus 103 i~~~~en-i~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n------e~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 103 IETKGEN-INITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVN------EISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred eeccCcc-eEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceee------eeeecCCCCEEEEecCCceEEEE
Confidence 8765555 4567889665 66889999999999998655433332221111 12555667777766777999999
Q ss_pred ECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC
Q 009274 368 SLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (538)
Q Consensus 368 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 445 (538)
....-+++..++.|.....||.|+ ++++++|+.|..+.+||+...-+++.+.... .....++|+.||++|++|++|
T Consensus 175 sypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred eccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEeccCcceeeccCcc
Confidence 999999999999999999999999 6799999999999999999888888776542 233347999999999999999
Q ss_pred CcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCC
Q 009274 446 GSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWD 483 (538)
Q Consensus 446 g~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~d 483 (538)
..|-|=+..+ .+..++ +.++...++| ...+|+-++.|
T Consensus 253 h~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9998887544 333333 5677788887 55677777655
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=185.33 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=172.4
Q ss_pred CcceeEEeecCCeEEEEEe------------------------------ecCCCcEEEEEEc---CCEEEEEeCCCcEEE
Q 009274 230 GVKDLVNGLSKGNVKFKDL------------------------------QGHRDCVTGLAVG---GGFLFSSSFDKSIHV 276 (538)
Q Consensus 230 ~~~~~~~~~~~~~~~i~~l------------------------------~~h~~~V~~l~~~---~~~l~s~s~dg~i~i 276 (538)
-++.++.|.-+..+.+|+| .+|+++|.+++|+ .+.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3557778888888888874 2699999999998 789999999999999
Q ss_pred EeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeec-CCEE
Q 009274 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRYL 355 (538)
Q Consensus 277 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 355 (538)
||+.++++..++..|.+.|.++.|+|....++++|+.|+++.+.|.+........-.+..... ...+.+. ...+
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE-----kv~w~~~se~~f 345 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE-----KVAWDPHSENSF 345 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE-----EEEecCCCceeE
Confidence 999999999999999999999999999999999999999999999986433332222222111 2345553 4488
Q ss_pred EEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEE
Q 009274 356 YTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLS 431 (538)
Q Consensus 356 ~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 431 (538)
++++.||+|+-+|+|+. +++++++.|.++|.+++++ ++++++++.|+.+++|++..-...........-....+++
T Consensus 346 ~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA 425 (463)
T ss_pred EEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc
Confidence 89999999999999975 8999999999999999998 7799999999999999997654422222111111233345
Q ss_pred EcCCC-CEEEEEeCCCcEEEEeCC
Q 009274 432 LTAVQ-HTLVVSHESGSIKVWRND 454 (538)
Q Consensus 432 ~~~~~-~~l~~~~~dg~i~iwd~~ 454 (538)
+.|+- ..++.|+..+.+++||+.
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cCCCcceEEEecCccceEEEeecc
Confidence 55554 467778888889999954
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=172.17 Aligned_cols=219 Identities=17% Similarity=0.220 Sum_probs=179.8
Q ss_pred eccCcceeEEeecCCeEEEEEee---------cCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCceEEEEecCCc
Q 009274 227 AAGGVKDLVNGLSKGNVKFKDLQ---------GHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH 293 (538)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~i~~l~---------~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 293 (538)
.+.++..+++++.|..+.+++++ .|.+.|+++.|. ...|++|+.||.|.+|+..+.+++.++++|.+
T Consensus 49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~ 128 (362)
T KOG0294|consen 49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG 128 (362)
T ss_pred EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc
Confidence 34567889999999999999864 699999999998 34899999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 373 (538)
.|+.++.+| .+++.++.+.|+.++.||+-.++........ .....+.|++.|.+++.++.+ .|-+|.+.+.+
T Consensus 129 ~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~------~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~ 200 (362)
T KOG0294|consen 129 QVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK------NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS 200 (362)
T ss_pred ccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccC------CcceeeEEcCCCCEEEEEecc-EEEEEecccHh
Confidence 999999999 5668899999999999999887654443332 222346888999988888875 58999988776
Q ss_pred eeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEE-EEcCCCCEEEEEeCCCcEEEE
Q 009274 374 LSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL-SLTAVQHTLVVSHESGSIKVW 451 (538)
Q Consensus 374 ~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~iw 451 (538)
....+.. ...+.|+.|. ++.|++|..|+.|.+||..+..+...+..|.. .+-.+. --.|++.+|++++.||.|++|
T Consensus 201 v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 201 VFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVW 278 (362)
T ss_pred Hhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh-heeeeEEEecCCceEEEEeccCceEEEE
Confidence 6655542 3567888887 77999999999999999999888888887744 444433 335778899999999999999
Q ss_pred eCCc
Q 009274 452 RNDK 455 (538)
Q Consensus 452 d~~~ 455 (538)
|.+.
T Consensus 279 d~~~ 282 (362)
T KOG0294|consen 279 DIDM 282 (362)
T ss_pred Eccc
Confidence 9653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=168.79 Aligned_cols=283 Identities=20% Similarity=0.306 Sum_probs=197.5
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceE--EEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV--HTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
+..|+||.+.|++++|+ |++|+|++.|++|++|++.+.... +.++ -.-+.-+.++|.|+...+++++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 34589999999999998 999999999999999999764321 1111 11234588999999999999988889999
Q ss_pred EEEccCCCCCc---ceeeecccC--CceeeeEE--EEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe
Q 009274 319 VWSFSFPLGHE---PLKKWNEEK--DWRYSGIH--ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391 (538)
Q Consensus 319 vwd~~~~~~~~---~~~~~~~~~--~~~~~~~~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 391 (538)
+|.+....... ....+..+. ..+...+. .+.-++.+|++++.|..|.+||++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99876433211 111111100 01111222 334456699999999999999998 89998887766666777777
Q ss_pred --CCEEEEEecCCcEEEEECC---CCc-----eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc------
Q 009274 392 --NGVLYSGSRDGTIRLWSLS---DHS-----LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------ 455 (538)
Q Consensus 392 --~~~l~s~s~dg~i~iwd~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------ 455 (538)
+.++++++.--.+++|.+- .|+ .+..+++|... +.. ++|+++...+++.+.||++++||+.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa-V~~-~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA-VLA-AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh-eee-eeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 6699999999999999873 232 34556666443 333 79999999999999999999999542
Q ss_pred ---ceeee--ccc---cceE-EEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEE
Q 009274 456 ---FMKSM--QTH---KGSV-FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVG 525 (538)
Q Consensus 456 ---~~~~~--~~h---~~~v-~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg 525 (538)
.++.. ..| ..++ .+++|+|+.|+.+. ...+++|..++++........ ++..+.++.|. +|++++.
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~----h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI----HSTTISSISYSSDGKYIAT 390 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh----hcCceeeEEecCCCcEEee
Confidence 11111 111 1222 46778998887765 457999999887754433322 45556666664 8888887
Q ss_pred ECCCeEEEEE
Q 009274 526 CADRTVKVYY 535 (538)
Q Consensus 526 ~~dg~v~vw~ 535 (538)
+.|..+++..
T Consensus 391 cGdr~vrv~~ 400 (420)
T KOG2096|consen 391 CGDRYVRVIR 400 (420)
T ss_pred ecceeeeeec
Confidence 8888888865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-22 Score=182.97 Aligned_cols=208 Identities=22% Similarity=0.368 Sum_probs=174.4
Q ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 252 ~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
.++|.|++-+ |.+++.|+..|.+++|.+.+|+.+..+.+|-..|+++.|+. ++.++++|+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~------ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLT------ 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEE------
Confidence 4779999887 78888888999999999999999999999999999999987 55588999999999999875
Q ss_pred ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe----CCEEEEEecCCcEE
Q 009274 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC----NGVLYSGSRDGTIR 405 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~ 405 (538)
.++.+..|+ +-++.+.+..|.-+|+++... +.+++++|.|.+++
T Consensus 154 ------------------------~lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 154 ------------------------DLVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred ------------------------eecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 244444444 456788888999999999988 34999999999999
Q ss_pred EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC------------------cceeeeccccc--
Q 009274 406 LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------------------KFMKSMQTHKG-- 465 (538)
Q Consensus 406 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~h~~-- 465 (538)
+||+..+..+.++..+. ...+++++|-++.+++|+.+|.|.+.+.. .....+.+|.+
T Consensus 202 ~wdlS~g~LLlti~fp~---si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPS---SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEeccceeeEEEecCC---cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 99999999988887543 23447999999999999999999987632 13456678888
Q ss_pred eEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 466 SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 466 ~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
.|+|++. ||..|++|+.||+|.|||+.+.++.....
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 8988875 99999999999999999999887665544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-20 Score=171.31 Aligned_cols=308 Identities=18% Similarity=0.263 Sum_probs=221.9
Q ss_pred CccceeeeeccCcceeEEeecCC--------eEEEEE---------eecCCCcEEEEEEc----CCEEEEE--eCCCcEE
Q 009274 219 GADIDQARAAGGVKDLVNGLSKG--------NVKFKD---------LQGHRDCVTGLAVG----GGFLFSS--SFDKSIH 275 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~---------l~~h~~~V~~l~~~----~~~l~s~--s~dg~i~ 275 (538)
+.++-+..+.++-..++++...+ .+++|+ +..-...|+|++|+ |.+++.. +.+..+.
T Consensus 104 ~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lS 183 (626)
T KOG2106|consen 104 NDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLS 183 (626)
T ss_pred CCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccc
Confidence 34455555555544555443333 355665 33566889999998 6666654 4566789
Q ss_pred EEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEE
Q 009274 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355 (538)
Q Consensus 276 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 355 (538)
+||.+.+......+..++.|....|+|.+.+++++++. |.+.+|+++.+...+....+..... ....+++|.++|+ +
T Consensus 184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engd-v 260 (626)
T KOG2106|consen 184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGD-V 260 (626)
T ss_pred hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCC-E
Confidence 99999888888888888999999999999999888876 8999999988776666666555554 4444566777665 8
Q ss_pred EEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCc-----------eeEEEecCCC
Q 009274 356 YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHS-----------LLTVLEEDSS 423 (538)
Q Consensus 356 ~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~~~~ 423 (538)
++|..+|.|.||+..+.+..+....|.+.|.+++.. ++.|++|+.|+.|..||-.-.+ .++++.....
T Consensus 261 iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 261 ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG 340 (626)
T ss_pred EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence 899999999999998888777777999999999998 8899999999999999832111 1111111100
Q ss_pred C---------------------------ceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeeccccceEEEEEe--CC
Q 009274 424 G---------------------------AVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL--EG 474 (538)
Q Consensus 424 ~---------------------------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~~~~--~~ 474 (538)
. ....-++.+|+.+.+++++.|+.+++|+-.++..+... ..++.|+.| .|
T Consensus 341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~-~d~~~~~~fhpsg 419 (626)
T KOG2106|consen 341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII-EDPAECADFHPSG 419 (626)
T ss_pred cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEe-cCceeEeeccCcc
Confidence 0 00112567788889999999999999995555444332 344555554 67
Q ss_pred CEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CC-EEEEEECCCeEEEEEcC
Q 009274 475 KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~sg~~dg~v~vw~~~ 537 (538)
.++.|+..|...+.|.++........ ....++++.++ +| .|+.|+.|+.|++|.++
T Consensus 420 -~va~Gt~~G~w~V~d~e~~~lv~~~~------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 420 -VVAVGTATGRWFVLDTETQDLVTIHT------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred -eEEEeeccceEEEEecccceeEEEEe------cCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 99999999999999999866544332 23456666664 55 47789999999999875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=186.00 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=194.3
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC-ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF-SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
.+|...-+.++|. |++|++++.||.|++|+..+- +...++..+...|.+++. ....|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCC
Confidence 4688889999998 999999999999999997655 444555557888888876 3447899999999999999988
Q ss_pred CCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCc
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGT 403 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 403 (538)
.....+..+.... .+++++.+|++++.|+.|-.|++.++........+++|..+|.++.|+ +++|++.+.||.
T Consensus 87 ~~~~iL~Rftlp~-----r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 87 EEDTILARFTLPI-----RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred Cccceeeeeeccc-----eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 7776666655433 367888899999999999999999999999999999999999999999 669999999999
Q ss_pred EEEEECCCCceeEEEecCC------CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeec--cccceEEEEEe-
Q 009274 404 IRLWSLSDHSLLTVLEEDS------SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQ--THKGSVFAVFL- 472 (538)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~--~h~~~v~~~~~- 472 (538)
|++||+.++.+..++..-. ...+....+|+|++..++..+.|+.|++|+... ....+. .+...+..+.|
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 9999999988776664321 134556689999999999999999999998654 333332 23444555554
Q ss_pred -CCCEEEEEeCCCeEEEEecCC
Q 009274 473 -EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 473 -~~~~l~sgs~dg~v~iwd~~~ 493 (538)
+|+|||+++.||.|.|||+++
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999997
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-21 Score=174.62 Aligned_cols=282 Identities=14% Similarity=0.159 Sum_probs=201.5
Q ss_pred eecCCCcEEEEEEc---C-CEEEEEeCCCcEEEEeCCC----CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 248 LQGHRDCVTGLAVG---G-GFLFSSSFDKSIHVWSLKD----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 248 l~~h~~~V~~l~~~---~-~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
.+-|.+.|++++|+ . +++++|+.-|.|-+||+.+ ..-+..+..|..+|.++.|+|.+...+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 56688999999999 3 7899999999999999952 23356677899999999999999999999999999999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEe---CCEE
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL-SCTMSGHKSAVSTLAVC---NGVL 395 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~---~~~l 395 (538)
-|++.......+... ........+.++.+...++.+..=|...+||.+++.. ...+.-|...|++++++ +.++
T Consensus 262 ~D~~~~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeecchhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 999865433332221 1222333445666666777777778999999998765 66667789999999999 5699
Q ss_pred EEEecCCcEEEEECCCCceeEE--Ee-cCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC------cceeeecc---c
Q 009274 396 YSGSRDGTIRLWSLSDHSLLTV--LE-EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------KFMKSMQT---H 463 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~---h 463 (538)
+++|.|++.+|||++....... +. ..|...+ ....|+|.+..|++.+.|..|+|||.. .+...+.. +
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 9999999999999987433221 21 2233333 446999999889999999999999963 12223321 1
Q ss_pred cceEEE----EEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e-CCEEEE-EECCCeEEEEEc
Q 009274 464 KGSVFA----VFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W-QGKLFV-GCADRTVKVYYY 536 (538)
Q Consensus 464 ~~~v~~----~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~s-g~~dg~v~vw~~ 536 (538)
..+++- ..|+..++++|-.-..|-|+|-+.++....+.... ...+.....+ | +..+++ ++..|.|+||--
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~---~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE---SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc---ccccccceeecccccceeccCCccceEEEEec
Confidence 112221 23488999999999999999999988554433221 1122222233 3 333555 567899999854
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=190.47 Aligned_cols=271 Identities=18% Similarity=0.251 Sum_probs=209.7
Q ss_pred CCCccceeeeeccCcceeEEee--cCCeEEEEE---------------------eecCCCcEEEEEEc--CCEEEEEeCC
Q 009274 217 SDGADIDQARAAGGVKDLVNGL--SKGNVKFKD---------------------LQGHRDCVTGLAVG--GGFLFSSSFD 271 (538)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~---------------------l~~h~~~V~~l~~~--~~~l~s~s~d 271 (538)
+.+..+..+...+++..++++. .++++.+|+ +..|.+.|+|+.|+ |++||+||.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4455588888899999999998 777777877 34699999999999 9999999999
Q ss_pred CcEEEEeCCC------------------CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceee
Q 009274 272 KSIHVWSLKD------------------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (538)
Q Consensus 272 g~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (538)
+.|.||+... .+.+..+.+|...|.+++|+| +..++++++.|++|.+||..+.+... .
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~---v 166 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLK---V 166 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeee---e
Confidence 9999998762 246778899999999999999 56689999999999999998764333 3
Q ss_pred ecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCC------CCeEEEEEe--CCEEEEEe----cC
Q 009274 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK------SAVSTLAVC--NGVLYSGS----RD 401 (538)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~--~~~l~s~s----~d 401 (538)
...|... . .-..|.|-|++|++-+.|++|++|++.+....+.+.++. ..+..+.|+ +.+|++.. .-
T Consensus 167 l~~H~s~-V-KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 167 LRGHQSL-V-KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred eeccccc-c-cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 3333332 1 134788889999999999999999988777777765543 356788898 44777753 34
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCC-----CC------------EEEEEeCCCcEEEEeCCc--cee-eec
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV-----QH------------TLVVSHESGSIKVWRNDK--FMK-SMQ 461 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~--~~~-~~~ 461 (538)
.++.|.+-.+.+.-..+-+|+. . ..++.|+|. .+ .+|+|+.|++|.||.+.. ++. ...
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~-p-~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSA-P-VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred ceeEEEecCCceeeeeeecCCC-c-eEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence 5688888877777777877765 3 334677652 11 688999999999999643 222 223
Q ss_pred cccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 462 THKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 462 ~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
-....|..++| ||..|+.+|.||+|.++.++..+
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 34568888888 89999999999999999987654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=182.29 Aligned_cols=268 Identities=15% Similarity=0.136 Sum_probs=185.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCce------EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSH------VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 335 (538)
...|+.+..||.|.++|...... +..+..|...|.++.|.| ++..|++++.|.++++||+.+......- ...
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~ 141 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGR-LNL 141 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecce-eec
Confidence 56789999999999999864322 355667999999999999 8889999999999999999876544332 222
Q ss_pred ccCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCc--------------------e-------eEEecCCCC----
Q 009274 336 EEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGT--------------------L-------SCTMSGHKS---- 383 (538)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~--------------------~-------~~~~~~h~~---- 383 (538)
+|.. .. ...||.+. ...|++|+.||.|.|||++-.. + +...+.+..
T Consensus 142 GH~~-Sv-kS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 142 GHTG-SV-KSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred cccc-cc-chhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 2222 11 23466664 5599999999999999996431 0 111122333
Q ss_pred CeEEEEEe-CCEEEEEec-CCcEEEEECCCCceeEEEe------cCC---CCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 384 AVSTLAVC-NGVLYSGSR-DGTIRLWSLSDHSLLTVLE------EDS---SGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 384 ~v~~l~~~-~~~l~s~s~-dg~i~iwd~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
.|+.+.|- +..|++++. |+.|++||++......... .+. ...-...+.....|.+|++.+.|+.|+.|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 35556666 568999887 9999999999765432221 111 112223356667789999888999999999
Q ss_pred CCc----ceeeeccccce---E-EEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe---CCE
Q 009274 453 NDK----FMKSMQTHKGS---V-FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW---QGK 521 (538)
Q Consensus 453 ~~~----~~~~~~~h~~~---v-~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 521 (538)
+.. ++..+.++... + .+++|++.++++|+.|...++|.+...+........ +...++.+.|. ...
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G----ht~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG----HTREVTTVRWLPSATTP 375 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC----cceEEEEEeeccccCCC
Confidence 654 44444444332 2 345679999999999999999999887654433322 23334555443 556
Q ss_pred EEEEECCCeEEEEEcC
Q 009274 522 LFVGCADRTVKVYYYG 537 (538)
Q Consensus 522 l~sg~~dg~v~vw~~~ 537 (538)
++++++|-.+++|++.
T Consensus 376 v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRLS 391 (720)
T ss_pred ceeeccCcceEEEecc
Confidence 9999999999999985
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=189.61 Aligned_cols=271 Identities=17% Similarity=0.211 Sum_probs=191.9
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCCC----ceEEEEecC---CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDF----SHVHTFKGH---DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
..+|+.+ -..++.++.. .++||.+... ++...++.. ...+..+.|..-..+++++++..|.|.+||+...
T Consensus 42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 3445554 3445555533 6777766432 222222221 1345678888778889999999999999999876
Q ss_pred CCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEecC
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRD 401 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~d 401 (538)
...+.+..+..|.. ......|++ ..++|++|+.||+|++||++..+...++.+....|.++.|+ ++.++++...
T Consensus 121 ~rnk~l~~f~EH~R--s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 121 IRNKLLTVFNEHER--SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccchhhhHhhhhcc--ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 55555555555543 122334444 46699999999999999999999999999989999999999 5699999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeecc-ccceEEEEEe---CCC
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT-HKGSVFAVFL---EGK 475 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~-h~~~v~~~~~---~~~ 475 (538)
|.+++||+|....-......|.+.+.+ +.|+|++.+||+|+.|++|+|||... ......- ...++.++.| ...
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c-~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLC-LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEE-EeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999999865433333344666665 69999999999999999999999552 1111112 2357778887 456
Q ss_pred EEEEEeC--CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC---EEEEEECCCeEEE
Q 009274 476 WLFTGGW--DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG---KLFVGCADRTVKV 533 (538)
Q Consensus 476 ~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~sg~~dg~v~v 533 (538)
.|++++. |-.|+|||+...-+....... +...++.++|+.+ .+.+++.||+|..
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e----H~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLE----HTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeec----cCccccceeccCCCceeeEeecCccHHHH
Confidence 7887774 778999999877544332222 5567778888742 3778999998753
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=161.52 Aligned_cols=239 Identities=16% Similarity=0.315 Sum_probs=173.7
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC----CceEEEEecCCcCeEEEEEe-cCCCCEEEEEcCCCcEEEEE
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD----FSHVHTFKGHDHKVMAVVYV-DEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd 321 (538)
.+|.+-|+|+.|+ |+.+|||+.|++|+|||..+ ..+....+.|.+.|..+.|. |.-+..+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999998 99999999999999999643 34566778999999999997 55678999999999999997
Q ss_pred ccCCCCCcc------eeeecccCCceeeeEEEEeec--CCEEEEeeCCCcEEEEECCCC------ceeEEec-------C
Q 009274 322 FSFPLGHEP------LKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDG------TLSCTMS-------G 380 (538)
Q Consensus 322 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~------~~~~~~~-------~ 380 (538)
-........ ......... ... -++|.|. |-.+++++.||.++||+.... .+..++. .
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~Dsrs-sV~-DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRS-SVT-DVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred ecccccccccceeEEEEEeecCCc-cee-EEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 632211111 111111111 111 2244443 558999999999999987542 2222332 4
Q ss_pred CCCCeEEEEEe-----CCEEEEEecC-----CcEEEEECCCCc----eeEEEecCCCCceEEEEEEcCCC----CEEEEE
Q 009274 381 HKSAVSTLAVC-----NGVLYSGSRD-----GTIRLWSLSDHS----LLTVLEEDSSGAVSSVLSLTAVQ----HTLVVS 442 (538)
Q Consensus 381 h~~~v~~l~~~-----~~~l~s~s~d-----g~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~ 442 (538)
+..+..|+.|+ ..+|+.|+.+ +.++||....+. .+.++.. +...+.. ++|.|+- .+|+++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~d-i~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRD-ISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCccee-eeeccccCCceeeEEEe
Confidence 66778899998 3378888876 478888775543 2333443 3445555 6888863 579999
Q ss_pred eCCCcEEEEeCCc----------------------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 443 HESGSIKVWRNDK----------------------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 443 ~~dg~i~iwd~~~----------------------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+.|| |+||.++. .+..+..|++.|..+.| .|..|.+.|.||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 99998541 24456789999999998 79999999999999999865
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-19 Score=173.45 Aligned_cols=306 Identities=17% Similarity=0.231 Sum_probs=222.2
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEee----------cC-CCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDLQ----------GH-RDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~----------~h-~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
.+.+.+++..+..++.+-.+|.+.+|++. || ...|.+++|+ +..|++.+.+|+|.-||+.++++...+
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEe
Confidence 36677888888889999999999999853 33 5689999999 999999999999999999999999999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEE--EEeecCCEEEEeeCCCcEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH--ALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~sg~~dg~i~i 366 (538)
....+.|++++.+|.+ ..++.|+.||.+..++...+... .-..+.. ....+. ++.+++..+++|+.||.|++
T Consensus 107 d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~-~~r~l~r----q~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKIT-YKRSLMR----QKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred cCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEE-EEeeccc----ccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999998855 56788999997777766543211 1111111 112234 45556668999999999999
Q ss_pred EECCCCceeEEec----C----CCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC
Q 009274 367 WSLLDGTLSCTMS----G----HKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH 437 (538)
Q Consensus 367 wd~~~~~~~~~~~----~----h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (538)
||..++..+.... + ...-|+++.+- ++.+++|..-|+|.+||...+..++.+..+.. .+.+ ++..++++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a-dVl~-Lav~~~~d 258 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA-DVLA-LAVADNED 258 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhc-ceeE-EEEcCCCC
Confidence 9999988766221 1 22245666665 88999999999999999999999998887744 3333 78899999
Q ss_pred EEEEEeCCCcEEEEeCCcc------eeeeccccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCc
Q 009274 438 TLVVSHESGSIKVWRNDKF------MKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSV 511 (538)
Q Consensus 438 ~l~~~~~dg~i~iwd~~~~------~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 511 (538)
++++++.|+.|.-|..... ......|...+.+++.-+..+++|+.|..+.+-.....+......+ ...+...
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~-~~~p~~~- 336 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQK-NLFPASD- 336 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhcc-ccccccc-
Confidence 9999999999998873322 2234568888999988677999999999999887765332211111 1111111
Q ss_pred eEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 512 ITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 512 ~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.....+..+|+.-=.+..+.+|.++
T Consensus 337 -~v~~a~~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 337 -RVSVAPENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred -eeecCccceEEEEeccccccceecc
Confidence 1122234455555555556666654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=162.59 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=202.7
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 290 (538)
-.+..|+.-+..++.|..+|.+.+|+| .+|..+|+|++|+ |+.|+|+|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 457889999999999999999999995 5899999999999 9999999999999999999999999887
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECC
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~ 370 (538)
...+|+.+.|+|...+.+++.-.+..-.+-++..+.. ..+..-.............+.+.|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 6789999999998888877776666666666654221 111111111111122223577889999999999999999999
Q ss_pred CCceeEEecCCC-CCeEEEEEe--CCEEEEEecCCcEEEEECCCC-------c--eeEEEecCCCCceEEEEEEcCCCCE
Q 009274 371 DGTLSCTMSGHK-SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH-------S--LLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 371 ~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
+.+++..++-.. ..|..+.++ +.+++.-+.|+.||.|+++.- + +.+++..--.......++|+.+|.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999998887555 788888888 779999999999999998731 1 1122211111112233689999999
Q ss_pred EEEEeC-CCcEEEEe--CCcceeeecccc-ceEEEEEeC--CCEEEEEeCCCeEEEEecCC
Q 009274 439 LVVSHE-SGSIKVWR--NDKFMKSMQTHK-GSVFAVFLE--GKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 439 l~~~~~-dg~i~iwd--~~~~~~~~~~h~-~~v~~~~~~--~~~l~sgs~dg~v~iwd~~~ 493 (538)
++.++. ...++||. ++++++.+.|.. .....+.|+ ...+++- ..|.+++|....
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 988764 45799997 678899998877 455667663 3445554 679999997643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=176.59 Aligned_cols=285 Identities=19% Similarity=0.229 Sum_probs=202.6
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+.||++.|.||+.+ |.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.....+++......+.+-+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3478999999999998 9999999999999999999999999987 456899999999777666666655666666543
Q ss_pred CCCCC-------------------cceeeeccc----CC---------ceeeeEEEEeecCCEEEEeeCC---CcEEEEE
Q 009274 324 FPLGH-------------------EPLKKWNEE----KD---------WRYSGIHALTTSGRYLYTGSGD---RTIKAWS 368 (538)
Q Consensus 324 ~~~~~-------------------~~~~~~~~~----~~---------~~~~~~~~~~~~~~~l~sg~~d---g~i~iwd 368 (538)
-+... ..+..|... .. .....-+.++..|+||++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 22100 001111111 00 0001122456678899988664 5788999
Q ss_pred CCCCceeEEecCCCCCeEEEEEeC--CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 369 LLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
+...+...-|....+.|.++.|++ .++++++. ..|++||+.....+..+... ....+.++++|.|..|+.|+.|+
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEecCCC
Confidence 977766666666778899999993 36666654 67999999988777766543 33455589999999999999999
Q ss_pred cEEEEeCC---cceeeeccccceEEEEEeCC--CEEEEEeCCCeEEEEe------cCCCeeEe-eeecCCc--ccCCCce
Q 009274 447 SIKVWRND---KFMKSMQTHKGSVFAVFLEG--KWLFTGGWDKTVSVQE------LAGDEFEE-DVIPTGA--IPCGSVI 512 (538)
Q Consensus 447 ~i~iwd~~---~~~~~~~~h~~~v~~~~~~~--~~l~sgs~dg~v~iwd------~~~~~~~~-~~~~~~~--~~~~~~~ 512 (538)
.+..||+. ++.+++..|...++++++.+ .++++|+.||++.||. +-.+.+.. .....+. .....+.
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL 709 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL 709 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence 99999943 58889999999999999854 5799999999999984 22222221 1111111 1112233
Q ss_pred EEEEEe-CCEEEEEECCCeEEEE
Q 009274 513 TALLYW-QGKLFVGCADRTVKVY 534 (538)
Q Consensus 513 ~~~~~~-~~~l~sg~~dg~v~vw 534 (538)
.+.+.| .-.|++++.||+|++|
T Consensus 710 d~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 710 DTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccCCCceEEecCCCceEEee
Confidence 334444 4459999999999998
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=180.51 Aligned_cols=235 Identities=16% Similarity=0.219 Sum_probs=186.5
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecC--CCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE--DQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
-.+.+++.+ +++|++|..-|+++||++.+.+....++.|...|.|+.|+.. +..+|++++.|.-|+++|.....
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-- 537 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-- 537 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--
Confidence 478999999 999999999999999999999999999999999999999843 45789999999999999987432
Q ss_pred cceeeecccCCceeeeEEEEeecC--CEEEEeeCCCcEEEEECCCCceeEEecC-----CCCCeEEEEEe--CCEEEEEe
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSG--RYLYTGSGDRTIKAWSLLDGTLSCTMSG-----HKSAVSTLAVC--NGVLYSGS 399 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~--~~~l~s~s 399 (538)
..+.....|.. .+..+ .|..+| ..+++++.|..|.+--.+.......+.. ....++.++.. .+++++++
T Consensus 538 ~l~qtld~HSs-sITsv-KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 538 DLVQTLDGHSS-SITSV-KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred chhhhhccccc-ceeEE-EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 23333434332 22223 333344 4889999998876543332111222222 23567888887 45999999
Q ss_pred cCCcEEEEECCCCceeEEEecCCC--CceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEe--C
Q 009274 400 RDGTIRLWSLSDHSLLTVLEEDSS--GAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL--E 473 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~--~ 473 (538)
.|+.|+|||+.+++..+.|++.+. +.... +...|.|.|+++.+.|.++.++| .++++..+.+|...|+.+.| |
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIK-v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEE-EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 999999999999999999987543 33333 58899999999999999999999 67899999999999999998 8
Q ss_pred CCEEEEEeCCCeEEEEecC
Q 009274 474 GKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 474 ~~~l~sgs~dg~v~iwd~~ 492 (538)
-+.|++.+.||.|.||.+.
T Consensus 695 CkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chhheeecCCceEEEEECc
Confidence 8999999999999999875
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=171.93 Aligned_cols=214 Identities=14% Similarity=0.245 Sum_probs=170.4
Q ss_pred ceeEEeecCCeEEEEE---------eecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCC---------------------
Q 009274 232 KDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKD--------------------- 281 (538)
Q Consensus 232 ~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~--------------------- 281 (538)
..+++|+.||.+++|+ ++.|.+.|..|++....+++++.|.+|+.|.++-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence 3566778888888887 5689999999999988899999999999997321
Q ss_pred ------C-----------ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeee
Q 009274 282 ------F-----------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (538)
Q Consensus 282 ------~-----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
| .++..+.-....|.++.|+|....+|++|..|+.|.+||+++......+..-... .
T Consensus 160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT------N 233 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT------N 233 (433)
T ss_pred ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc------c
Confidence 1 1233333344678899999989999999999999999999987665544432211 2
Q ss_pred EEEEeecCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecC
Q 009274 345 IHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 345 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 421 (538)
..+|+|.+-.+++|+.|..++.||++.. .++....+|.+.|.+++|+ +..+++||.|.+|+||..+.+.........
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 3488887779999999999999999875 4677889999999999999 779999999999999999887654433333
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
....+.+ +.|+.|.+++++|+.|+.|++|.
T Consensus 314 RMq~V~~-Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 314 RMQHVFC-VKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhheeeE-EEEeccccEEEecCCCcceeeee
Confidence 2344554 58999999999999999999997
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-19 Score=169.37 Aligned_cols=276 Identities=18% Similarity=0.274 Sum_probs=204.3
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc-eEEEEecC-CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-HVHTFKGH-DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
--..+|+|+||+ .+.||.+-.||.|-+|++...= +...+.++ +..|.+++|++ ++ .|++.+.+|.|.-||+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEecccC
Confidence 345889999999 7889999999999999997643 33445554 57899999984 33 5689999999999999876
Q ss_pred CCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeE--EecCCCCCeEEEEEe-CC-EEEEEecC
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC--TMSGHKSAVSTLAVC-NG-VLYSGSRD 401 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~-~~-~l~s~s~d 401 (538)
+....+.... ......+++|.+..++.|++||.++.++...++... .+...++.|.+++|+ .+ .+++|+.|
T Consensus 101 k~~~~~d~~g-----g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 101 KQKYNIDSNG-----GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred ceeEEecCCC-----cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 5443332211 222345778888899999999988888887776544 344567899999999 33 69999999
Q ss_pred CcEEEEECCCCceeEEEec-----CC--CCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEe
Q 009274 402 GTIRLWSLSDHSLLTVLEE-----DS--SGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL 472 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~ 472 (538)
|.|++||..++..+..... .. ...+.++ .+- ....|++|...|+|.+|| .+++++.+..|...|.++..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv-~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV-LFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEE-EEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence 9999999999987763221 11 1122222 222 345799999999999999 56788999999999999976
Q ss_pred --CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEE
Q 009274 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYY 535 (538)
Q Consensus 473 --~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~ 535 (538)
++++++++|.|+.|.-|...+.+..+........ +..-+.+++.-+..+++|+.|..+.+-.
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~-h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL-HAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccC-CcccceeeeeecceEEecceeeEEEEcc
Confidence 6789999999999999988877543222222222 3334566666666899999999887643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-19 Score=168.35 Aligned_cols=261 Identities=16% Similarity=0.138 Sum_probs=178.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCce
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (538)
++.+++++.|+.|++||+.+++.+..+..+.. +.+++|+|++..++++++.++.|++||..+++....+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~-- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGPD-- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCCC--
Confidence 46789999999999999999999988886644 67899999877666788889999999998754322221 1111
Q ss_pred eeeEEEEeecCCEEEEe-eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCC-cEEEEECCCCceeEE
Q 009274 342 YSGIHALTTSGRYLYTG-SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG-TIRLWSLSDHSLLTV 417 (538)
Q Consensus 342 ~~~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg-~i~iwd~~~~~~~~~ 417 (538)
....+++++++.++++ +.|+.+++||+.+++.+..+.. ...+.+++|+ +.++++++.++ .+..||.++++....
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 1245788898866554 5689999999998888777753 3346788998 45777777765 467789988877665
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCCc--ceeeecccc-----ce--EEEE--EeCCCEEEE-EeCCC
Q 009274 418 LEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK--FMKSMQTHK-----GS--VFAV--FLEGKWLFT-GGWDK 484 (538)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~~~~~h~-----~~--v~~~--~~~~~~l~s-gs~dg 484 (538)
...... . ..+.+++++++++++ ..++.|++||..+ ....+..+. .. ...+ ++++++++. .+.++
T Consensus 153 ~~~~~~--~-~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 153 VLVDQR--P-RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEcCCC--c-cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 543222 2 236899999988655 4689999999654 333333221 11 1233 457887544 45577
Q ss_pred eEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEE-ECCCeEEEEEcCC
Q 009274 485 TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVG-CADRTVKVYYYGK 538 (538)
Q Consensus 485 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg-~~dg~v~vw~~~~ 538 (538)
.+.+||+.+.+........ ..+....+.+++. |+++ +.+|.|++||+.+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVG-----QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred eEEEEECCCCcEEEEEEeC-----CCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 8999999887765443221 1222333445554 6665 5699999999853
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-22 Score=191.15 Aligned_cols=207 Identities=25% Similarity=0.433 Sum_probs=171.4
Q ss_pred ceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEE
Q 009274 232 KDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300 (538)
Q Consensus 232 ~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 300 (538)
..++.|..+..+.+|. |.+|..+|.|+.|+ ..+|++|+.||+|++||++.++.++++.+|...+..+.|
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 4444454444444443 78999999999999 888999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC
Q 009274 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG 380 (538)
Q Consensus 301 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 380 (538)
+|-+. ++++|+.|+.+++||.+...+..... . ......+..++|+|++++.|++|.++++||...|+...+|..
T Consensus 121 ~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~---s--~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 121 HPYGE-FFASGSTDTDLKIWDIRKKGCSHTYK---S--HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred ccceE-EeccccccccceehhhhccCceeeec---C--CcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 99655 56999999999999998544433332 2 123455789999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeC--CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 381 HKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 381 h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
|.+.+.++.|++ -++++|+.|+++++||+++.+.+........+ +.+ ..|++++..+.+|..+.
T Consensus 195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~-v~~-~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG-VRS-LAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC-cee-eeecCCceeeecCchhh
Confidence 999999999993 38889999999999999998888777665333 333 69999999988887653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=167.44 Aligned_cols=264 Identities=19% Similarity=0.243 Sum_probs=176.9
Q ss_pred EEeCCC-cEEEEeCCCCceEEEEecC-CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeee
Q 009274 267 SSSFDK-SIHVWSLKDFSHVHTFKGH-DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (538)
Q Consensus 267 s~s~dg-~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
+++.|. ++.+||+.+|....++++. ...-.++.... ...++++-.....+.+|.+............. ....
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P-----g~v~ 85 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP-----GPVH 85 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc-hhheeeecccCccccccccCchhhhhhhcccc-----ccee
Confidence 344554 4999999999999999865 22222222221 23344444455689999987543332111100 1122
Q ss_pred EEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECC---------CCc
Q 009274 345 IHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLS---------DHS 413 (538)
Q Consensus 345 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~---------~~~ 413 (538)
+...+++|.+++.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+ +.++++||.||.|.+|++. +-+
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 44566778889988899999999999999999999999999999999 4599999999999999874 234
Q ss_pred eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEE--EeCCCEEEEEeCCCeEEEE
Q 009274 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQ 489 (538)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~--~~~~~~l~sgs~dg~v~iw 489 (538)
+.+.+..|........+.+.+....+++++.|.++++||+. ..+.++.. ...+.++ ++-++.++.|+.+|.|.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEee
Confidence 56666655443333223333445789999999999999954 44444433 3445555 5678999999999999998
Q ss_pred ecCCCeeEe-----e--------eecCCcccCCCceEEEEEe-CC-EEEEEECCCeEEEEEcC
Q 009274 490 ELAGDEFEE-----D--------VIPTGAIPCGSVITALLYW-QG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 490 d~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~-~~-~l~sg~~dg~v~vw~~~ 537 (538)
++..-.... . .........+..++++..+ |+ .|++|+.||+|.|||+.
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 875432100 0 0000011122467776665 55 48889999999999974
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=169.46 Aligned_cols=236 Identities=20% Similarity=0.236 Sum_probs=167.0
Q ss_pred EEEEEecC------CCCEEEEEcCCCcEEEEEccCCCCCcceeeec--------------ccCCceeeeEEEEeecC---
Q 009274 296 MAVVYVDE------DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN--------------EEKDWRYSGIHALTTSG--- 352 (538)
Q Consensus 296 ~~l~~~~~------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--- 352 (538)
.|+.|... .++++|.|+.|..|.|||+.-.....+...+. .....+...+.+++++.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56677532 35699999999999999986432221111111 00011222334555543
Q ss_pred CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCce-eEEEecCCCCceEE
Q 009274 353 RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSL-LTVLEEDSSGAVSS 428 (538)
Q Consensus 353 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~ 428 (538)
+.|++||.|.+|++||+.++++..++..|.+.|.++.|+ +.+|++|+.|+++.+.|.|.... -..++. .+.+-.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEk 334 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEK 334 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEE
Confidence 489999999999999999999999999999999999999 56999999999999999995322 122221 233444
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 429 VLSLTAV-QHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 429 ~~~~~~~-~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
+.|.|. ...++++..||+++-+|.+ +++.+++.|.++|.++++ ...+++|++.|+.|++|++..........
T Consensus 335 -v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 335 -VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred -EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 466654 5678888899999999965 578899999999999987 56789999999999999997654322222
Q ss_pred cCCcccCCCceEEEEEe---CCEEEEEECCCeEEEEEcC
Q 009274 502 PTGAIPCGSVITALLYW---QGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 502 ~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~v~vw~~~ 537 (538)
+... -+ ...++... ...++.|+..+.++|||+.
T Consensus 414 ~~~~--~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 414 HSFK--LG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccc--cc-ceeecccCCCcceEEEecCccceEEEeecc
Confidence 2111 11 12222222 3458889999999999975
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=158.85 Aligned_cols=282 Identities=16% Similarity=0.231 Sum_probs=191.1
Q ss_pred eecCCCcEEEEEEc-------CCEEEEEeCCCcEEEEeCCCC---ceEEEEe--cCCcCeEEEEEec---CCCCEEEEEc
Q 009274 248 LQGHRDCVTGLAVG-------GGFLFSSSFDKSIHVWSLKDF---SHVHTFK--GHDHKVMAVVYVD---EDQPLCISGD 312 (538)
Q Consensus 248 l~~h~~~V~~l~~~-------~~~l~s~s~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~~~---~~~~~l~s~~ 312 (538)
.++|..+|..++|+ .+.++|++.+ .+.+|..... ..++.+. .|......++|+- +++.+++.|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 56899999999997 4567777654 7888886532 3334433 3677888899873 3466889999
Q ss_pred CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeEEE
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVSTL 388 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l 388 (538)
.-|.|+|.|+.+++....+..... ....+ .+.| +.++++++|.|.+|++||+++..++..+ .+|.+.|.++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~----sINei-k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGG----SINEI-KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred ceeEEEEEecchhhhccceeccCc----cchhh-hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence 999999999988766555544322 22222 3344 4569999999999999999999999887 6799999999
Q ss_pred EEe--CCEEEEEecCCcEEEEECCCCceeEEEecC------CC-----C-----ceEEEEEEcC--------CCCEEEEE
Q 009274 389 AVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEED------SS-----G-----AVSSVLSLTA--------VQHTLVVS 442 (538)
Q Consensus 389 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~-----~-----~~~~~~~~~~--------~~~~l~~~ 442 (538)
.|+ +.++++|+.|.+|++|++...+....++.. .. . ...+...++. -|+++++-
T Consensus 188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSk 267 (385)
T KOG1034|consen 188 DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSK 267 (385)
T ss_pred EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeec
Confidence 999 669999999999999999854321111100 00 0 0000011111 16789999
Q ss_pred eCCCcEEEEeCCccee----------------eeccccceEEEEEe----CCCEEEEEeCCCeEEEEecCCCeeEeeeec
Q 009274 443 HESGSIKVWRNDKFMK----------------SMQTHKGSVFAVFL----EGKWLFTGGWDKTVSVQELAGDEFEEDVIP 502 (538)
Q Consensus 443 ~~dg~i~iwd~~~~~~----------------~~~~h~~~v~~~~~----~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 502 (538)
+-++.|..|..++... .+......++-+.| -++.|+.|...|.|++||++..+.......
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 9999999998643221 22223334444433 578999999999999999987765322222
Q ss_pred CCcccCCCceEEE-EEeCCE-EEEEECCCeEEEEEc
Q 009274 503 TGAIPCGSVITAL-LYWQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 503 ~~~~~~~~~~~~~-~~~~~~-l~sg~~dg~v~vw~~ 536 (538)
.... .+..+.-. ++.|+. |+..++|++|.-||-
T Consensus 348 ~~s~-~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 348 THSK-SGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred Eecc-ccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 2222 23344444 444665 667899999999984
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=157.62 Aligned_cols=246 Identities=15% Similarity=0.200 Sum_probs=169.1
Q ss_pred EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcE
Q 009274 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTI 364 (538)
Q Consensus 286 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i 364 (538)
..+++|.+.|++++|+.++ ..|++++.|++|++|+++.-.... -+.........-.....|+||-+ .+++.-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e-Hr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE-HRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh-hhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 3578999999999998855 577999999999999987532111 01111111111223458888877 45555556689
Q ss_pred EEEECCC---CceeEE--------e-cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEE
Q 009274 365 KAWSLLD---GTLSCT--------M-SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL 430 (538)
Q Consensus 365 ~iwd~~~---~~~~~~--------~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 430 (538)
++|.+.. |..... + +.|.-.+..+-.. ..++++++.|..|.+|+++ |+.+..+......... .
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~--a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD--A 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc--e
Confidence 9998643 211111 1 2345555555555 3499999999999999998 8888888765443333 6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC---C-------cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC----
Q 009274 431 SLTAVQHTLVVSHESGSIKVWRN---D-------KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD---- 494 (538)
Q Consensus 431 ~~~~~~~~l~~~~~dg~i~iwd~---~-------~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~---- 494 (538)
+.+|+|+++++++..-.+++|.. + .....+++|+..|.+++| +...++|.|.||++++||..-.
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 89999999999999999999972 1 245678999999999988 7889999999999999998521
Q ss_pred ---eeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEc
Q 009274 495 ---EFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 495 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~ 536 (538)
+.............+.++....+|++..++.+....++++.-
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 111111011111234466777778888888777777887753
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=187.01 Aligned_cols=234 Identities=21% Similarity=0.375 Sum_probs=189.0
Q ss_pred CCeEEEEE---eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 240 KGNVKFKD---LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 240 ~~~~~i~~---l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
....++|+ +..|...|.|+..- ++.+++|+.|-.+-+|.+.....+..|.+|..+|.++.|++.
T Consensus 13 ~t~Lr~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~----------- 81 (825)
T KOG0267|consen 13 ATKLRVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS----------- 81 (825)
T ss_pred eeccccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc-----------
Confidence 33444555 34688888888764 899999999999999999887778889999999999988652
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~ 392 (538)
..+|++|+.+|+|++||+..++.++++.+|...+.++.|+ +
T Consensus 82 -------------------------------------E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~ 124 (825)
T KOG0267|consen 82 -------------------------------------ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG 124 (825)
T ss_pred -------------------------------------hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce
Confidence 3356777788888888888888889999999999999999 5
Q ss_pred CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEE
Q 009274 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAV 470 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~ 470 (538)
.+.++|+.|+.+++||++...+.+.+..+ .. +..++.++|+|+++++|+.|..+++||. ++....|..|.+.+.++
T Consensus 125 ~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 125 EFFASGSTDTDLKIWDIRKKGCSHTYKSH-TR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL 202 (825)
T ss_pred EEeccccccccceehhhhccCceeeecCC-cc-eeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence 68899999999999999988899998874 33 4555899999999999999999999994 57888999999999999
Q ss_pred Ee--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEEC
Q 009274 471 FL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCA 527 (538)
Q Consensus 471 ~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 527 (538)
.+ ..-++++||.|+++++||+++.+........ ...+....+.+++..+.++.
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~----~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE----TDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccceeEEeeccCCc----cCCceeeeecCCceeeecCc
Confidence 87 5668899999999999999988765544433 22344444555776554433
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-19 Score=169.89 Aligned_cols=283 Identities=17% Similarity=0.213 Sum_probs=198.2
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC--------------------------------------------
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF-------------------------------------------- 282 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~-------------------------------------------- 282 (538)
.||++.|.++.|+ +..|+++|.|.++.+|...+.
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 4999999999999 668999999999999965421
Q ss_pred --------ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec-ccCCceeeeEEEEeecCC
Q 009274 283 --------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN-EEKDWRYSGIHALTTSGR 353 (538)
Q Consensus 283 --------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 353 (538)
.....+.+|.+.|.+++|.|.++ ++++.+.|.+-|++---..+. . -.... +.....-..+.++-+...
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~-~-wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQ-E-WHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeeccccccc-c-eeeecccccccccceeeehccCCc
Confidence 00112347889999999998666 778999999999986441111 1 11111 111111112233333344
Q ss_pred EEEEeeCCCcEEEEECCCC-------------------------------------------------------------
Q 009274 354 YLYTGSGDRTIKAWSLLDG------------------------------------------------------------- 372 (538)
Q Consensus 354 ~l~sg~~dg~i~iwd~~~~------------------------------------------------------------- 372 (538)
.+++|.+...+|+|+....
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 7888888888899886321
Q ss_pred ---------------ceeEEecCCCCCeEEEEEe--CCEEEEEecCC-----cEEEEECCCCceeEEEecCCCCceEEEE
Q 009274 373 ---------------TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG-----TIRLWSLSDHSLLTVLEEDSSGAVSSVL 430 (538)
Q Consensus 373 ---------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 430 (538)
-.++.+.||...|++++.+ ++++++++... .|++|+..+....+.+..|.- . ...+
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-T-VT~l 578 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-T-VTRL 578 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce-E-EEEE
Confidence 0112345888999999999 67999988654 489999999888887877643 2 3347
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCc------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeec
Q 009274 431 SLTAVQHTLVVSHESGSIKVWRNDK------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIP 502 (538)
Q Consensus 431 ~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 502 (538)
.|+||+++|++.+.|+++.+|...+ .....+.|+.-|.+++| ++.+++|+|.|.+|++|.......... ..
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i-~~ 657 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI-SR 657 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh-hh
Confidence 9999999999999999999997432 12336789999999887 888999999999999999987731111 11
Q ss_pred CCcccCCCceEEEEEe------CC-EEEEEECCCeEEEEEcC
Q 009274 503 TGAIPCGSVITALLYW------QG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 503 ~~~~~~~~~~~~~~~~------~~-~l~sg~~dg~v~vw~~~ 537 (538)
......+..++++.+. .+ .+++|-..|.|.+|+..
T Consensus 658 ~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 1223345556665553 12 35678899999999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=159.92 Aligned_cols=241 Identities=16% Similarity=0.199 Sum_probs=184.7
Q ss_pred cCCCcEEEEEEc------CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 250 GHRDCVTGLAVG------GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 250 ~h~~~V~~l~~~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
.|...-..++|+ +.++|.|+.-|.|+|.|+.+++....+.+|...|+.+.++|...+++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 477888888886 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc------ee----------------E-----
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT------LS----------------C----- 376 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~------~~----------------~----- 376 (538)
+..+...+.....|... .. ...++.++.++++++.|.++++|++...+ +. .
T Consensus 167 ~~~Cv~VfGG~egHrde-VL-SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDE-VL-SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeEEEEecccccccCc-EE-EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 98877777766666652 22 23677788999999999999999997321 00 0
Q ss_pred -EecCCCCCeEEEEEeCCEEEEEecCCcEEEEEC-CCCcee-------------EEEecCCCCceEEEEEEcCCCCEEEE
Q 009274 377 -TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSL-SDHSLL-------------TVLEEDSSGAVSSVLSLTAVQHTLVV 441 (538)
Q Consensus 377 -~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (538)
+-.-|...|-|+.|-++++++=|.++.|..|.. +-++.+ ..+....-....-..++.+-+++|+.
T Consensus 245 st~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 113478888999999999999999999999987 222221 12222111112223567788899999
Q ss_pred EeCCCcEEEEeCCcc----eeeecc--ccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 442 SHESGSIKVWRNDKF----MKSMQT--HKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 442 ~~~dg~i~iwd~~~~----~~~~~~--h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
|...|.+++||++.. ..++.. ....|...++ |+..|+....|++|--||.-
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999996531 112221 1235555555 99999999999999999853
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-17 Score=151.47 Aligned_cols=297 Identities=18% Similarity=0.240 Sum_probs=217.2
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEeec------------C-CCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDLQG------------H-RDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------------h-~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
.+..+.+.+.+..++.....+.+.+|++.+ + +.-|.|++|. +.-++||..+|.|.||+..+.+..+
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe
Confidence 355677788888888888888888887543 2 3689999999 8899999999999999998888887
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEE
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~i 366 (538)
....|.+.|.+++...++ .+++|+.|..|..|| ..-+........ .....+..+.+.+.-|+.|...+.|--
T Consensus 282 ~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd-~~y~k~r~~elP-----e~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWD-DNYRKLRETELP-----EQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred EeeecCCceEEEEEecCc--cEeecCccceEEecc-ccccccccccCc-----hhcCCeeEEecCCCcEEEeeccceEEE
Confidence 777999999999987644 356799999999999 222211111111 122335556665555888888777766
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeC
Q 009274 367 WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE 444 (538)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (538)
=.+.++-.+ ...+|......++.+ .+.+++++.|+.+++|+ ..++..+.....+ ..+..|+|.| .++.|+.
T Consensus 354 Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~---~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 354 GTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP---AECADFHPSG-VVAVGTA 426 (626)
T ss_pred eeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCc---eeEeeccCcc-eEEEeec
Confidence 666655444 345788999999988 56999999999999999 5566665554322 2336999999 9999999
Q ss_pred CCcEEEEeCCc-ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CC
Q 009274 445 SGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QG 520 (538)
Q Consensus 445 dg~i~iwd~~~-~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 520 (538)
.|...+.|..+ ..-++.....++.++.+ +|.+|+.|+.|+.|++|.++.+.......... +++.++.+.|+ |+
T Consensus 427 ~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~---~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC---SGSPITHLDWSSDS 503 (626)
T ss_pred cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee---cCceeEEeeecCCC
Confidence 99999999665 22223333667777765 99999999999999999997654333222221 33677777776 55
Q ss_pred E-EEEEECCCeEEEEE
Q 009274 521 K-LFVGCADRTVKVYY 535 (538)
Q Consensus 521 ~-l~sg~~dg~v~vw~ 535 (538)
+ +.+-+-|-.|..|.
T Consensus 504 ~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 504 QFLVSNSGDYEILYWK 519 (626)
T ss_pred ceEEeccCceEEEEEc
Confidence 5 56677888899994
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=153.25 Aligned_cols=204 Identities=18% Similarity=0.282 Sum_probs=159.0
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc----e-------eeecccCCceeeeEEEEeecCCEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP----L-------KKWNEEKDWRYSGIHALTTSGRYLYT 357 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (538)
..|.+.|+++..-+..++++++|+.||.|.+||++....... . +.....+...+.....+..|...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 468899999999999999999999999999999986431110 0 11111222334444455567779999
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-----CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 009274 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-----NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (538)
Q Consensus 358 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (538)
++.|.++++||.++.+....|+ ..+.|++-+++ .-++++|..|-.|++.|+.+|..-+++.+|.. .+.. +.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vla-V~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLA-VEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEE-EEe
Confidence 9999999999999988887776 56778877777 23788889999999999999999999998854 4444 578
Q ss_pred cCCCC-EEEEEeCCCcEEEEeCCcc---ee--------------eeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 433 TAVQH-TLVVSHESGSIKVWRNDKF---MK--------------SMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 433 ~~~~~-~l~~~~~dg~i~iwd~~~~---~~--------------~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+|... .|++|+.||.|++||.++. .. .-..|.+.+..++| ++.++++.+.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 88665 5778999999999996631 11 23457788999998 99999999999999999998
Q ss_pred CCe
Q 009274 493 GDE 495 (538)
Q Consensus 493 ~~~ 495 (538)
.++
T Consensus 277 ~G~ 279 (397)
T KOG4283|consen 277 SGR 279 (397)
T ss_pred cCc
Confidence 765
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=158.42 Aligned_cols=232 Identities=20% Similarity=0.291 Sum_probs=167.7
Q ss_pred ecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCC----------------CCceEEEEecCCcCeEEEEEecCCCCEE
Q 009274 249 QGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLK----------------DFSHVHTFKGHDHKVMAVVYVDEDQPLC 308 (538)
Q Consensus 249 ~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~----------------~~~~~~~~~~h~~~v~~l~~~~~~~~~l 308 (538)
-+|.+.++.+..+ ..+.++=+..|.|+|||+. ..+++.++.+|...=++++|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3566667666665 3455556778899999874 2467888999999999999999666667
Q ss_pred EEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCc---eeEEecCCCCC
Q 009274 309 ISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGT---LSCTMSGHKSA 384 (538)
Q Consensus 309 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~ 384 (538)
++|..-+.|++|...++.-......+..|.. ...-++++|..+ .|++||.||+|+|||+|.+. ++.+ +.|.+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~--SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTK--SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccCceeecCcccccccc--chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc
Confidence 8999999999999887654433333333221 112346777544 99999999999999999883 3333 889999
Q ss_pred eEEEEEe--CCEEEEEecCCcEEEEECCC---CceeEEEecCCCCceEEEEEEcCC-CCEEEEEeCCCcEEEEeCCc---
Q 009274 385 VSTLAVC--NGVLYSGSRDGTIRLWSLSD---HSLLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRNDK--- 455 (538)
Q Consensus 385 v~~l~~~--~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~--- 455 (538)
|+.|.|+ -.+|++|+.||+++|||+|+ ++++..++.| ...+++ +.|+|. ...|++++.|.+|.+||+.-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pIts-ieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITS-IEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeE-EEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 9999999 33899999999999999986 4567888876 455555 588875 56788899999999999431
Q ss_pred ---------------ceeeecccc--ceEEEEEe---CCCEEEEEeCCCe
Q 009274 456 ---------------FMKSMQTHK--GSVFAVFL---EGKWLFTGGWDKT 485 (538)
Q Consensus 456 ---------------~~~~~~~h~--~~v~~~~~---~~~~l~sgs~dg~ 485 (538)
+-+.+-.|. ..+..+.| ...++++.+.||.
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 111222242 24455666 4557888888873
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=158.70 Aligned_cols=265 Identities=13% Similarity=0.179 Sum_probs=182.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCce
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (538)
..+|++-..|+|++||..+++.+..++++...++.+.|... +...+.+|+.||+|++||+++......+..-.. ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-~~-- 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-SG-- 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC-CC--
Confidence 66888888999999999999999999999999999999875 677889999999999999998765544433222 11
Q ss_pred eeeEEEEee--cCCEEEEeeC----CCcEEEEECCCCce-eEEe-cCCCCCeEEEEEe---CCEEEEEecCCcEEEEECC
Q 009274 342 YSGIHALTT--SGRYLYTGSG----DRTIKAWSLLDGTL-SCTM-SGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLS 410 (538)
Q Consensus 342 ~~~~~~~~~--~~~~l~sg~~----dg~i~iwd~~~~~~-~~~~-~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~ 410 (538)
.+..++.. .++.+++|+. |-.|.+||+|..+. +..+ ..|.+.|+++.|+ +++|++||.||.+.++|+.
T Consensus 118 -~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 118 -TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred -CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 12334444 5667777754 67899999998766 5554 6799999999999 6699999999999999997
Q ss_pred CCce----eEEEecCCCCceEEEEEEcCCC-CEEEEEeCCCcEEEEeCCcc--eeeecc-------------ccceEEEE
Q 009274 411 DHSL----LTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWRNDKF--MKSMQT-------------HKGSVFAV 470 (538)
Q Consensus 411 ~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~~~~~~-------------h~~~v~~~ 470 (538)
.... +..+.. ...+.. +.|..++ +.|.+-+..++..+|+.... ...+.. -..-|.+.
T Consensus 197 ~d~EeDaL~~viN~--~sSI~~-igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~ 273 (376)
T KOG1188|consen 197 KDNEEDALLHVINH--GSSIHL-IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH 273 (376)
T ss_pred CCcchhhHHHhhcc--cceeee-eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence 6432 233322 222333 5666555 56888889999999985431 111111 11223444
Q ss_pred Ee-CCCEEEEEeC-CCeEEEEecCC---CeeEe-eeecCCcccCCCceEEEEEe--CCEEEEEECCCeEEEEEc
Q 009274 471 FL-EGKWLFTGGW-DKTVSVQELAG---DEFEE-DVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 471 ~~-~~~~l~sgs~-dg~v~iwd~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~v~vw~~ 536 (538)
++ +....+.++. -|...++-+.. +.... ..... ..+..+++.++++ +..+++|++||.+.+|+.
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~--g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ--GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCcccccc--CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 45 5556666555 56666665542 22111 11111 1144566666665 667999999999999983
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=166.39 Aligned_cols=209 Identities=15% Similarity=0.193 Sum_probs=173.0
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceee
Q 009274 256 TGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (538)
Q Consensus 256 ~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (538)
.|++.. ..++++|+..++|+|||+....+.+.+++|...|+++.|... ..++++++..|.|.|..+.++.....+..
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceec
Confidence 444433 689999999999999999987788889999999999999764 45779999999999999987765555443
Q ss_pred ecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEe-cCCCCCeEEEEEe---CCEEEEEecCCcEEEEE
Q 009274 334 WNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTM-SGHKSAVSTLAVC---NGVLYSGSRDGTIRLWS 408 (538)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd 408 (538)
... .....+.+++..+ +|.+++.+|.|.+||+....++..+ ..|..+...|+|+ +.+|++.+.|..|.+||
T Consensus 162 ~sg----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 162 DSG----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCC----CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 222 2224567788777 7888999999999999888877765 6799999999999 34899999999999999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe
Q 009274 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL 472 (538)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~ 472 (538)
.+..+....+...++ .+.++|+++|.+|+.|...|.|..||++ .++..+..|...|++++|
T Consensus 238 ~~s~~s~~~l~y~~P---lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 238 IRSQASTDRLTYSHP---LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred cccccccceeeecCC---cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 998887777765543 3347999999999999999999999965 578888999999999998
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-17 Score=162.09 Aligned_cols=277 Identities=18% Similarity=0.302 Sum_probs=188.7
Q ss_pred EEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 009274 255 VTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 255 V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
|+++.-- =+.++.|+.+|.+.+|++.+++.+.+++++...|+++.-+| --..++.|..+|+|.++++..++....+
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6666543 56788999999999999999999999999999999999877 4557899999999999999876544333
Q ss_pred eeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEec-------------------------------
Q 009274 332 KKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMS------------------------------- 379 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~------------------------------- 379 (538)
+. . +.....++|.-||+ .+++|+..|.+.+||++..+.+..+.
T Consensus 241 k~---d--~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 241 KQ---D--WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred Ec---c--ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 32 2 11222345666787 77888888999999997654443332
Q ss_pred ----------------CCCCCeEEEEEe---CCEEEEEecCCcEEEEECCC-----------------------------
Q 009274 380 ----------------GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSD----------------------------- 411 (538)
Q Consensus 380 ----------------~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~----------------------------- 411 (538)
||..+-.|+.|. +.++.+++.|++++.+++..
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 344455555554 22555555555444443321
Q ss_pred ------------------------------------Cce-eEEEecC---CCCceEEEEEEcCCCCEEEEEeCCCcEEEE
Q 009274 412 ------------------------------------HSL-LTVLEED---SSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (538)
Q Consensus 412 ------------------------------------~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 451 (538)
... .+.+... .......+++.++.|++.+.|+..|.|.+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 000 0000000 011223446888999999999999999999
Q ss_pred eCCcce--eee---ccccceEEEEEeC--CCEEEEEeCCCeEEEEecCCCeeEeeeecCCcc------------------
Q 009274 452 RNDKFM--KSM---QTHKGSVFAVFLE--GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI------------------ 506 (538)
Q Consensus 452 d~~~~~--~~~---~~h~~~v~~~~~~--~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~------------------ 506 (538)
+....+ ..+ ..|.++|++++.| ++.+++++.+|.+++||..+..+..........
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence 976533 344 5799999999885 567999999999999999876533222111100
Q ss_pred ------------------cCCCceEEEEE-eCCE-EEEEECCCeEEEEEcC
Q 009274 507 ------------------PCGSVITALLY-WQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 507 ------------------~~~~~~~~~~~-~~~~-l~sg~~dg~v~vw~~~ 537 (538)
.++..++.+.+ +||+ |++++.|++|++||+-
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 14445565555 5776 8899999999999984
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=150.66 Aligned_cols=244 Identities=14% Similarity=0.164 Sum_probs=163.1
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce-eeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL-KKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKA 366 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~i 366 (538)
.+|.+-|+++.|.+.+ +.+++|+.|++++|||.+........ ..+..+.. ....+...+| -|+.+++++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCccccceEEEEecCCceee
Confidence 3688999999997754 56699999999999997655444333 33444444 2233333344 5889999999999999
Q ss_pred EECCC---------CceeEEecCCCCCeEEEEEeC----CEEEEEecCCcEEEEECCCCceeE------EEe-----cCC
Q 009274 367 WSLLD---------GTLSCTMSGHKSAVSTLAVCN----GVLYSGSRDGTIRLWSLSDHSLLT------VLE-----EDS 422 (538)
Q Consensus 367 wd~~~---------~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~iwd~~~~~~~~------~~~-----~~~ 422 (538)
|.-.. .....++....+.|+++.|.+ =.+++++.||.+|||+..+.-.+. .+. ...
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 98621 123456667788999999983 389999999999999876543222 222 001
Q ss_pred CCceEEEEEEcCC---CCEEEEEeCC-----CcEEEEeCCc------ceeeeccccceEEEEEe------CCCEEEEEeC
Q 009274 423 SGAVSSVLSLTAV---QHTLVVSHES-----GSIKVWRNDK------FMKSMQTHKGSVFAVFL------EGKWLFTGGW 482 (538)
Q Consensus 423 ~~~~~~~~~~~~~---~~~l~~~~~d-----g~i~iwd~~~------~~~~~~~h~~~v~~~~~------~~~~l~sgs~ 482 (538)
......++.|++. ..+|++|+.+ +.+.||...+ .+.++.+|..+|+.++| .-..|++++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 1122344677764 4578888766 5889996332 34567789999999987 3358999999
Q ss_pred CCeEEEEecCCCe----------------eEeeeecCCcccCCCceEEEEEe--CCEEEEEECCCeEEEEEc
Q 009274 483 DKTVSVQELAGDE----------------FEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 483 dg~v~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~v~vw~~ 536 (538)
|| |+||.+.... +........ -.|...+-.+.|+ +..|.+.|.||+||+|+-
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99 9999987421 111111101 1133344445554 444777999999999975
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=170.92 Aligned_cols=260 Identities=16% Similarity=0.163 Sum_probs=203.1
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEEe----------ecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKDL----------QGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGH 291 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~l----------~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 291 (538)
...+.+.+.+..+++...++.+++|+- .-|...|.+++...++|++|+.+++|.+|...+++.-..+...
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf 95 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARF 95 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeee
Confidence 345666777889999999999999872 2277889999998889999999999999999988876666667
Q ss_pred CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC
Q 009274 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371 (538)
Q Consensus 292 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 371 (538)
+-++.+++|+. ++.+++.|+.|-.|++-+..+......++..... ...+.++|++++|++.+.||.|++||+.+
T Consensus 96 tlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap-----Vl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 96 TLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP-----VLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCc-----eeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 78999999987 5557899999999999998876655555443322 22457778888999999999999999999
Q ss_pred CceeEEecCC--------CCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEE
Q 009274 372 GTLSCTMSGH--------KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (538)
Q Consensus 372 ~~~~~~~~~h--------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (538)
+.+..++.+- ...+..++|+ ++.++..+.|+.|++|+..+.+....+.........+++.|+|+|.|||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 8877766431 3456778999 56999999999999999999999888887665555677899999999999
Q ss_pred EeCCCcEEEEeCCcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEE
Q 009274 442 SHESGSIKVWRNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQ 489 (538)
Q Consensus 442 ~~~dg~i~iwd~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iw 489 (538)
++.||.|.|||..+... ......|.+++| +.+.+-.-...|...+|
T Consensus 250 s~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 250 STLDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eccCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999876222 223457777777 55544444344444333
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=162.49 Aligned_cols=159 Identities=23% Similarity=0.420 Sum_probs=131.9
Q ss_pred eecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceE---EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 248 LQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHV---HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 248 l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
+.+|.+.=.+++|+ ...++||..-+.|++|...++.-. ..+.+|+..|..++|+|....+|++|+.||+|+|||
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWD 286 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWD 286 (440)
T ss_pred ecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEE
Confidence 56788888999999 567899988899999998886543 345679999999999999999999999999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecC--CEEEEeeCCCcEEEEECCC---CceeEEecCCCCCeEEEEEe---CC
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSG--RYLYTGSGDRTIKAWSLLD---GTLSCTMSGHKSAVSTLAVC---NG 393 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~---~~ 393 (538)
++.+.....+.. ..+. ..+..++++. .+|++|+.||+++|||+++ ++++..++-|..+|++|.|+ ..
T Consensus 287 iRs~~~~~~~~~-kAh~----sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 287 IRSGPKKAAVST-KAHN----SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred ecCCCccceeEe-eccC----CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence 998866555544 2222 2344455544 4899999999999999985 56889999999999999999 55
Q ss_pred EEEEEecCCcEEEEECCC
Q 009274 394 VLYSGSRDGTIRLWSLSD 411 (538)
Q Consensus 394 ~l~s~s~dg~i~iwd~~~ 411 (538)
.+++++.|..|.+||+..
T Consensus 362 ~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCCcEEEEEeec
Confidence 999999999999999963
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=163.25 Aligned_cols=256 Identities=13% Similarity=0.206 Sum_probs=184.1
Q ss_pred CCcEEEEeCCCCceEEEEecCC--cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc-eeeecccCCceeeeEEE
Q 009274 271 DKSIHVWSLKDFSHVHTFKGHD--HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP-LKKWNEEKDWRYSGIHA 347 (538)
Q Consensus 271 dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~ 347 (538)
..++++||+...+....+..|+ ..+.++.|...+.-.+++.+.|..+++|.-.......+ +........ .|++
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~----~Cv~ 86 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA----FCVA 86 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchH----HHHh
Confidence 3479999997665554444332 34889999765443445556788999997554321111 222111111 1223
Q ss_pred EeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCc
Q 009274 348 LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA 425 (538)
Q Consensus 348 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 425 (538)
......++++|+..+.|+|||++...+.+.+++|.+.|+++.++ +.+|++++..|.|.+..+.++.....+.... +.
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s-gq 165 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS-GQ 165 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC-CC
Confidence 33334799999999999999999777777889999999999998 6799999999999999999998887777653 44
Q ss_pred eEEEEEEcCCCC-EEEEEeCCCcEEEEeCCc--c-eeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCeeEe
Q 009274 426 VSSVLSLTAVQH-TLVVSHESGSIKVWRNDK--F-MKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEE 498 (538)
Q Consensus 426 ~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--~-~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~ 498 (538)
....+.+++..+ +|.+++.+|.|.+||... + ..-.+.|..+...++| +..+|++.+.|+.|.+||....+...
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 445578888765 466788999999999543 3 3344679998887776 78899999999999999998766443
Q ss_pred eeecCCcccCCCceEE-EEEeCCE-EEEEECCCeEEEEEcC
Q 009274 499 DVIPTGAIPCGSVITA-LLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 499 ~~~~~~~~~~~~~~~~-~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
.+... .+.+. .+.++|. |++|...|.|..||+.
T Consensus 246 ~l~y~------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 246 RLTYS------HPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred eeeec------CCcceeeecCCceEEEeecCCceEEEEecc
Confidence 33322 23344 4455666 6678999999999974
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=165.61 Aligned_cols=304 Identities=18% Similarity=0.197 Sum_probs=205.3
Q ss_pred cCcceeEEeecCCeEEEEEeecCCCcEEEEEEc-----CCEEEEEeCCCcEEEEeCCCC--ceEEEEecCCcCeEEEEEe
Q 009274 229 GGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVG-----GGFLFSSSFDKSIHVWSLKDF--SHVHTFKGHDHKVMAVVYV 301 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~l~~h~~~V~~l~~~-----~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~ 301 (538)
+-+..++...+...+...++.||.++|+|+.+- ..++++|+.|+.|++|.++.. ..+.++++|...+.|+.-.
T Consensus 31 Ga~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~ 110 (764)
T KOG1063|consen 31 GAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVAR 110 (764)
T ss_pred cCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEee
Confidence 444556666666667788899999999999996 237999999999999999743 3456677777666666432
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC--EEEEeeCCCcEEEEECCCC--ceeEE
Q 009274 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR--YLYTGSGDRTIKAWSLLDG--TLSCT 377 (538)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~~dg~i~iwd~~~~--~~~~~ 377 (538)
.....+...|+++.+||.+..+ ................-+.+..++.+ .++.|+.+..|.++.-.+. +.+..
T Consensus 111 ---~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 111 ---SSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred ---eeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 2222233789999999984332 11222222222222233444555433 5677777888888875533 56778
Q ss_pred ecCCCCCeEEEEEe---C-C-EEEEEecCCcEEEEECCCCc---------------------eeEE---------EecCC
Q 009274 378 MSGHKSAVSTLAVC---N-G-VLYSGSRDGTIRLWSLSDHS---------------------LLTV---------LEEDS 422 (538)
Q Consensus 378 ~~~h~~~v~~l~~~---~-~-~l~s~s~dg~i~iwd~~~~~---------------------~~~~---------~~~~~ 422 (538)
+.||.+.|.+++|. + . +|+++|.|..||+|.+.-+. .... +...|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 89999999999998 2 2 89999999999999875322 0101 11234
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-----------------------------------------------
Q 009274 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK----------------------------------------------- 455 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------------------------- 455 (538)
...+.+ +.|+|.+..|++++.|.++.+|...+
T Consensus 267 eDWV~s-v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 267 EDWVYS-VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred ccceEE-EEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 455555 58889888888999999988885220
Q ss_pred -------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEE
Q 009274 456 -------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVG 525 (538)
Q Consensus 456 -------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg 525 (538)
....+.+|...|..+.| .|.+|++.|.|.+-|+|-.-+.+..........++.....+..+.+ +-++++|
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 11123568888999988 4999999999999999877644433333333344444444444455 6678899
Q ss_pred ECCCeEEEEEcC
Q 009274 526 CADRTVKVYYYG 537 (538)
Q Consensus 526 ~~dg~v~vw~~~ 537 (538)
.+...+|+|+..
T Consensus 426 AdEKVlRvF~aP 437 (764)
T KOG1063|consen 426 ADEKVLRVFEAP 437 (764)
T ss_pred ccceeeeeecCc
Confidence 999999999853
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-17 Score=156.19 Aligned_cols=248 Identities=13% Similarity=0.111 Sum_probs=171.7
Q ss_pred EEEEeecCCCcEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
.+..+.+|.. +.+++|+ ++.+ ++++.|+.|++||..+++....+..+.. +..++|+|+++.++++++.|+.+++|
T Consensus 23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 3445555544 6778998 6665 6677899999999999988877765544 46788999877676777789999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC-cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEE-
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLY- 396 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~- 396 (538)
|+.+......+ .... .....+++++++.+++++.++ .+.+||.++++....+.. .....+++|+ +.+++
T Consensus 101 d~~~~~~~~~~---~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 101 DIETRKVLAEI---PVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV 173 (300)
T ss_pred ECCCCeEEeEe---eCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE
Confidence 99864332222 1111 112357889999999888765 567889988877665542 2345678888 44564
Q ss_pred EEecCCcEEEEECCCCceeEEEecCCC-----CceEEEEEEcCCCCEEEEE-eCCCcEEEEeCCc--ceeeeccccceEE
Q 009274 397 SGSRDGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK--FMKSMQTHKGSVF 468 (538)
Q Consensus 397 s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~~~~~h~~~v~ 468 (538)
++..++.|++||+++++.+..+..... ......+.++|++++++++ +.++.+.+||..+ ....+ .+...+.
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~ 252 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVW 252 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcc
Confidence 445699999999999987766643211 1111235789999986554 5567899999654 22222 2334566
Q ss_pred EEEe--CCCEEEEE-eCCCeEEEEecCCCeeEeeee
Q 009274 469 AVFL--EGKWLFTG-GWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 469 ~~~~--~~~~l~sg-s~dg~v~iwd~~~~~~~~~~~ 501 (538)
++++ ++++|+++ +.+|.|++||+.+++......
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 6665 88888876 468999999999988765554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-18 Score=149.09 Aligned_cols=268 Identities=9% Similarity=0.128 Sum_probs=184.5
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (538)
-.|+.|+ |.+||.|..||.|.|||+.+...-+.+.+|..+|.+++|++++ +.|++++.|..|.+||+..+.....+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEE
Confidence 6789999 9999999999999999999999989999999999999999954 577999999999999999887555444
Q ss_pred eecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEec--CCCC----CeEEEEEe--CCEEEEEecCCc
Q 009274 333 KWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMS--GHKS----AVSTLAVC--NGVLYSGSRDGT 403 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~----~v~~l~~~--~~~l~s~s~dg~ 403 (538)
.... .....++|..+ ..++.-.+..-.+-++..+ ++.+- ...+ .-.+..|. ++++++|...|.
T Consensus 105 f~sp------v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 105 FDSP------VWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred ccCc------cceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 3211 11234555433 4444434444555555432 22221 1111 11223455 779999999999
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcce-----------eeecc--ccceEEEE
Q 009274 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM-----------KSMQT--HKGSVFAV 470 (538)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~--h~~~v~~~ 470 (538)
+.++|..+.+++..++......+.. +-++..|+.|+.-+.|+.||.|+..... ++++. ....-.++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~-I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQ-IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEEecchheeeeeeeechheeeeE-EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 9999999999998887664333333 6889999999999999999999855321 11111 11122344
Q ss_pred Ee--CCCEEEEEeC-CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEc
Q 009274 471 FL--EGKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 471 ~~--~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~ 536 (538)
+| +|.+++.++. -..++||.-..+.+...+.... +.....+.|..-+ ++..-..|.|++|..
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k----gE~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK----GEELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeeeecCCc----hhheeecccccceeeeeeccCCceEEEEe
Confidence 44 8888888775 3679999999998776554332 2223334444333 444448899999975
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-19 Score=165.30 Aligned_cols=237 Identities=20% Similarity=0.325 Sum_probs=180.3
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
.|..-|.++..+. ..+.+++|+. |.|+|||+.......++..+.......+...+.+.+||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4777788888876 4556677775 8999999998776666666555544456667789999999999999999999999
Q ss_pred CCCce--eEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC
Q 009274 370 LDGTL--SCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (538)
Q Consensus 370 ~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 445 (538)
....+ ...+....-..++++.+ .+..++|+.||.|.|||+.+...++.++++..+.. ++.+++||..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas--cIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS--CIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce--eEEecCCCceeecCCCc
Confidence 76543 33343333456677777 45889999999999999999999999999876543 37999999999999999
Q ss_pred CcEEEEeCCcceeeecc-ccceEEEE--EeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEE-EEe-CC
Q 009274 446 GSIKVWRNDKFMKSMQT-HKGSVFAV--FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYW-QG 520 (538)
Q Consensus 446 g~i~iwd~~~~~~~~~~-h~~~v~~~--~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 520 (538)
++||.||+++..+..+. ..+.|.++ ++++.+|+.|-.++.+-+......+....-. +.+.+..+ |.. +.
T Consensus 573 ntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl------heScVLSlKFa~cGk 646 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL------HESCVLSLKFAYCGK 646 (705)
T ss_pred cceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecc------cccEEEEEEecccCc
Confidence 99999998764433322 34567777 4599999999999999999887766443333 23344444 444 44
Q ss_pred EEEEEECCCeEEEEEc
Q 009274 521 KLFVGCADRTVKVYYY 536 (538)
Q Consensus 521 ~l~sg~~dg~v~vw~~ 536 (538)
.+++.+.|..+..|+.
T Consensus 647 wfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRT 662 (705)
T ss_pred eeeecCchhhhhhccC
Confidence 5888999999999975
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-17 Score=140.13 Aligned_cols=234 Identities=21% Similarity=0.289 Sum_probs=168.6
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCC----------CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKD----------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
|.+-+++ +++|+.|+.+|.|-+..+++ ...+...++|.++|+.++|. ..++++|+. |.|+-|.+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEeee
Confidence 3334455 88999999999999998753 23455668999999999997 335566654 99999988
Q ss_pred cCCCCCc-ceeeecc-------cCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C
Q 009274 323 SFPLGHE-PLKKWNE-------EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 323 ~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~ 392 (538)
+...... .-..+.. .........+.+.|..+-++.++.|+.++-||+++|+...++++|++.|.++.-. +
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 7543311 1111111 1111222344666777777777799999999999999999999999999999984 6
Q ss_pred CEEEEEecCCcEEEEECCCCceeEEEecCCCC------ceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeecccc
Q 009274 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG------AVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHK 464 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~ 464 (538)
..+++|+.||++|+||.++++.+..+...... ....+.+..-+..++++|+. ..+.+|.++. +...+. -.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ip 246 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IP 246 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cc
Confidence 79999999999999999999998887543211 11223456667778887754 5799999664 333332 23
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEecCCC
Q 009274 465 GSVFAVFLEGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 465 ~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
.++..+.|+.+.+++++..+.|.-|.+.+-
T Consensus 247 a~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 247 ARVHLVDFVDDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred cceeEeeeecceEEEeccccceeeeeeccE
Confidence 556777888899999999899999988753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=150.25 Aligned_cols=244 Identities=17% Similarity=0.258 Sum_probs=181.2
Q ss_pred EEEEeecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
+++.|++|.+.|+|+.|. +++|++|..-|.|++|++++.+....++ .|...|+.+.-.|++ -+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEE
Confidence 356678999999999999 8889999999999999999998888888 577889999888753 457889999999998
Q ss_pred ccCCC------------------------CCcceeee----------------------cccCCceeeeEEEEeec---C
Q 009274 322 FSFPL------------------------GHEPLKKW----------------------NEEKDWRYSGIHALTTS---G 352 (538)
Q Consensus 322 ~~~~~------------------------~~~~~~~~----------------------~~~~~~~~~~~~~~~~~---~ 352 (538)
+.... ....+... ..........++++..+ +
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 76410 00000000 00000111223344422 2
Q ss_pred C--EEEEeeCCCcEEEEECCCCc----------eeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCC--ce--
Q 009274 353 R--YLYTGSGDRTIKAWSLLDGT----------LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH--SL-- 414 (538)
Q Consensus 353 ~--~l~sg~~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~--~~-- 414 (538)
. ++++|.++|.+.+||+.++. .+.....|..+|.++.+. -+.=++|+.+..+..|++... .+
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 67888899999999999873 333445689999999997 335578888888999988643 22
Q ss_pred eEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 415 LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
...+...+++. .. +.+-||++.+++++.|+.||+|. ..+++..++.|...|++++| +...++.+|.|++|.+|+
T Consensus 244 ~~e~~lknpGv-~g-vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 244 RKEITLKNPGV-SG-VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cceEEecCCCc-cc-eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 12222222332 22 58899999999999999999988 45688899999999999998 668999999999999998
Q ss_pred c
Q 009274 491 L 491 (538)
Q Consensus 491 ~ 491 (538)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=181.95 Aligned_cols=260 Identities=18% Similarity=0.275 Sum_probs=192.0
Q ss_pred eCCCcEEEEeCC--CCc----eEEEEecCCcCeEEEEEecCCCC---EEEEEcCCCcEEEEEccC---CCCCcceeeecc
Q 009274 269 SFDKSIHVWSLK--DFS----HVHTFKGHDHKVMAVVYVDEDQP---LCISGDSGGGIFVWSFSF---PLGHEPLKKWNE 336 (538)
Q Consensus 269 s~dg~i~iwd~~--~~~----~~~~~~~h~~~v~~l~~~~~~~~---~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~ 336 (538)
+.+.++-||.+. +.+ .+..+. .....+.++|.+.+.. +++.|..||.|.+||... +.....+.....
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK 114 (1049)
T ss_pred ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence 445566666553 222 223332 3456789999876665 689999999999999876 333344444444
Q ss_pred cCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEe---CCEEEEEecCCcEEEEECC
Q 009274 337 EKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLS 410 (538)
Q Consensus 337 ~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~ 410 (538)
|.+ .+.. +.|.+. ++.|++|+.||.|.|||++..+.-.+.. ...+.|.+++|+ ...|++++.+|.+.|||++
T Consensus 115 h~G-~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 115 HTG-PVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred cCC-ceee-eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 444 2222 456664 4599999999999999998755444442 245789999999 4589999999999999999
Q ss_pred CCceeEEEecCCCCceEEEEEEcCCC-CEEEEEeCC---CcEEEEeCC---cceeeeccccceEEEEEe---CCCEEEEE
Q 009274 411 DHSLLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHES---GSIKVWRND---KFMKSMQTHKGSVFAVFL---EGKWLFTG 480 (538)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d---g~i~iwd~~---~~~~~~~~h~~~v~~~~~---~~~~l~sg 480 (538)
..+.+-.+..+......+.+.|+|+. ..+++++.| -.|.+||++ .+.+.+++|+..|.+++| |..+|+++
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 99888777766554546668999986 456666655 368999965 578889999999999998 77899999
Q ss_pred eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe---CCEEEEEECCCeEEEEEc
Q 009274 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW---QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 481 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~v~vw~~ 536 (538)
+.|+.|.+|+.++++....+.. .+..+..+.|. .+.+++++.||.|.|+.+
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~-----~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPA-----QGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCC-----CCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 9999999999999987665544 33456666664 446778999999999986
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=179.94 Aligned_cols=236 Identities=23% Similarity=0.307 Sum_probs=183.0
Q ss_pred CcEEEEEEc--C----CEEEEEeCCCcEEEEeCCC------CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 253 DCVTGLAVG--G----GFLFSSSFDKSIHVWSLKD------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 253 ~~V~~l~~~--~----~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
..-+.++|. + ..|+.|..||.|.+||... ...+.++..|++.|..+.|++..++++++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 345667776 3 3599999999999999864 234566788999999999999999999999999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCC---EEEEeeCCCcEEEEECCCCceeEEecCCCC--CeEEEEEeCC--
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR---YLYTGSGDRTIKAWSLLDGTLSCTMSGHKS--AVSTLAVCNG-- 393 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~-- 393 (538)
|+........... ......+.+++++.+ .|++++.+|.+.|||++..+++..+..|.+ .+..++|+++
T Consensus 145 Dlnn~~tP~~~~~-----~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 145 DLNKPETPFTPGS-----QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred ccCCcCCCCCCCC-----CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 9986543332221 112334667777654 899999999999999999988888766554 5778999933
Q ss_pred -EEEEEecCC---cEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCC-CEEEEEeCCCcEEEEeCC--cceeeeccccc
Q 009274 394 -VLYSGSRDG---TIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWRND--KFMKSMQTHKG 465 (538)
Q Consensus 394 -~l~s~s~dg---~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~ 465 (538)
.+++++.|. .|.+||+|.-. +++.+..|..+... +.|++.+ +++++++.|+.|.+|+.+ +.+..+.....
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils--lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS--LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceee--eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc
Confidence 677776654 49999998754 56667666555443 5666654 899999999999999955 47778888888
Q ss_pred eEEEEEe---CCCEEEEEeCCCeEEEEecCCCe
Q 009274 466 SVFAVFL---EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 466 ~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
++..+.| +...++.++-||.|-|+.+.+..
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999988 66689999999999999987654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=152.93 Aligned_cols=200 Identities=18% Similarity=0.263 Sum_probs=154.0
Q ss_pred eecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcE
Q 009274 248 LQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (538)
Q Consensus 248 l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 317 (538)
+.||+++|..++|+ +..|||||.|.+|.||++..+ +++..+.+|...|.-++|+|...+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 67999999999998 889999999999999998643 55788999999999999999999999999999999
Q ss_pred EEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCC--eEEEEEeCCEE
Q 009274 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA--VSTLAVCNGVL 395 (538)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~l 395 (538)
.+||+.++.....+. |. .....++|+.+|.++++.+.|..|+|||.++++.+..-.+|.+. ...+-..++.+
T Consensus 157 ~iWnv~tgeali~l~----hp--d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD----HP--DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred EEEeccCCceeeecC----CC--CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence 999999886554433 22 23335678889999999999999999999999999988888763 33443334446
Q ss_pred EEEe----cCCcEEEEECCCCceeEEE-ecCCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCC
Q 009274 396 YSGS----RDGTIRLWSLSDHSLLTVL-EEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRND 454 (538)
Q Consensus 396 ~s~s----~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 454 (538)
++.+ .+..+-+||..+.+....+ .......+. .-.+.++.++++.+ -.|+.|+.|...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-LPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceE-EeeecCCCCEEEEEecCCcceEEEEec
Confidence 6554 4778999998775432222 222222222 23677888877655 479999999843
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=139.05 Aligned_cols=289 Identities=16% Similarity=0.178 Sum_probs=190.0
Q ss_pred EEEEEeecCCCcEEEEEEc-----CCEEEEEeC----CCcEEEEeCC--CCceEEEE-ecCCcCeEEEEEecCCC----C
Q 009274 243 VKFKDLQGHRDCVTGLAVG-----GGFLFSSSF----DKSIHVWSLK--DFSHVHTF-KGHDHKVMAVVYVDEDQ----P 306 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~-----~~~l~s~s~----dg~i~iwd~~--~~~~~~~~-~~h~~~v~~l~~~~~~~----~ 306 (538)
..+..+..+ -++.++.|+ +.+|+.||. .+.|.|-.+. +++.+..- ..|..+++.+.|.|+.. .
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 345556655 357788887 667888875 3566665543 44443322 25889999999998653 4
Q ss_pred EEEEEcCCCcEEEEEccCCCCCccee-eecc-cCCceeeeEEEEee---cCCEEEEeeCCCcEEEEECCCCc---eeEEe
Q 009274 307 LCISGDSGGGIFVWSFSFPLGHEPLK-KWNE-EKDWRYSGIHALTT---SGRYLYTGSGDRTIKAWSLLDGT---LSCTM 378 (538)
Q Consensus 307 ~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~---~~~~l~sg~~dg~i~iwd~~~~~---~~~~~ 378 (538)
+|++++ ..+++|.+.......... .... .......++.+|.+ +.+++.+.+-|.+..|||+.++. ....+
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 555554 689999987533221111 1111 12223345667766 46799999999999999999863 36677
Q ss_pred cCCCCCeEEEEEeC---CEEEEEecCCcEEEEECCCCceeEEEecCCC-CceEEEEEEcC-CCCEEEEEeC-CCcEEEEe
Q 009274 379 SGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS-GAVSSVLSLTA-VQHTLVVSHE-SGSIKVWR 452 (538)
Q Consensus 379 ~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~-dg~i~iwd 452 (538)
-.|..+|..++|.. +.+++.+.||.+|+||+|..+.-..+..... ......++|++ |-+++++-.. ...|.+.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 89999999999992 4999999999999999998776554443222 22222356655 4467776544 45788899
Q ss_pred CC---cceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeC--CEEEE
Q 009274 453 ND---KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFV 524 (538)
Q Consensus 453 ~~---~~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s 524 (538)
++ .++..+++|++.|++++| ....|+|+|.|..+.+||+..........+......+.-+.-+.|.. .--++
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEE
Confidence 66 478889999999999998 78899999999999999997643211111111112333455555542 22444
Q ss_pred EECCCeEEEE
Q 009274 525 GCADRTVKVY 534 (538)
Q Consensus 525 g~~dg~v~vw 534 (538)
...++++.+-
T Consensus 353 i~~~kkleiL 362 (364)
T KOG0290|consen 353 ICFGKKLEIL 362 (364)
T ss_pred EEecCeeeEE
Confidence 4444455543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-16 Score=139.73 Aligned_cols=236 Identities=19% Similarity=0.295 Sum_probs=179.3
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCC-----C-------ceEEEEe-cCCcCeEEEEEec------CCCCEEEEEcC
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKD-----F-------SHVHTFK-GHDHKVMAVVYVD------EDQPLCISGDS 313 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~-----~-------~~~~~~~-~h~~~v~~l~~~~------~~~~~l~s~~~ 313 (538)
...+.|+ |..|++-+.|..+++|++.. + +...+++ .....|...+|.+ .+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4467888 99999999999999998742 1 0111111 1345677777762 35678899999
Q ss_pred CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC-CCCce--eEEe-----cCCCCCe
Q 009274 314 GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL-LDGTL--SCTM-----SGHKSAV 385 (538)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~-~~~~~--~~~~-----~~h~~~v 385 (538)
+.-|++||.-+++.................-.++|++||.+|++|. ...|+++|+ +.|.- +... .+..+-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999999988877777666655555556789999999999875 478999999 55542 2221 2336778
Q ss_pred EEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeC-CCcEEEEeCCc---cee
Q 009274 386 STLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDK---FMK 458 (538)
Q Consensus 386 ~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~---~~~ 458 (538)
.|++|+ .+.++.|+...++-|+.-..+.++..+.++. +.++. +.|.++|+.|++|.. |-.|..||++. ++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~-gGvTh-L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG-GGVTH-LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC-CCeee-EEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 899999 4589999999999999988888888887664 44443 799999999999875 77899999764 566
Q ss_pred eeccccc-eE----EEEEeCCCEEEEEeCCCeEEEEecCC
Q 009274 459 SMQTHKG-SV----FAVFLEGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 459 ~~~~h~~-~v----~~~~~~~~~l~sgs~dg~v~iwd~~~ 493 (538)
.+..|.+ .- ..+.+++++|++|+.||.|++||+.+
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 6677765 22 34556899999999999999999987
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=147.46 Aligned_cols=255 Identities=18% Similarity=0.234 Sum_probs=173.2
Q ss_pred EeCCCCceEEEEecCCcCeEEEEEecCCC-CEEEEEcCCCcEEEEEccCCC-CCcceeeecccCCceeeeEEEEee-cCC
Q 009274 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIFVWSFSFPL-GHEPLKKWNEEKDWRYSGIHALTT-SGR 353 (538)
Q Consensus 277 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 353 (538)
+|+.+.......+.+.++|++++|+|..+ .++++|+.-|.|-+||+.+.. ....+..+..+.. .+. .+.|+| +..
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-~Vs-~l~F~P~n~s 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-PVS-GLKFSPANTS 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-ccc-ceEecCCChh
Confidence 45555566677788999999999999877 899999999999999996332 2333344443332 233 335555 455
Q ss_pred EEEEeeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCce-eEEEecCCCCceEE
Q 009274 354 YLYTGSGDRTIKAWSLLDGTL--SCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSL-LTVLEEDSSGAVSS 428 (538)
Q Consensus 354 ~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~ 428 (538)
.+++.|.||+|++-|++.+.. +..+......+.++.|+ +..++.+..=|...+||++++.. ...+..|.. .+..
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~s 327 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITS 327 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccce
Confidence 999999999999999987643 33333345566777777 45777777777999999998765 444554433 4444
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCcce------eeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC----CCe
Q 009274 429 VLSLTAV-QHTLVVSHESGSIKVWRNDKFM------KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA----GDE 495 (538)
Q Consensus 429 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~----~~~ 495 (538)
++++|. ..+|++++.|++.+|||+++.. -....|...|.+..| .+..|+|.+.|..|+|||.. ...
T Consensus 328 -v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 328 -VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred -eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 688875 4678999999999999976532 333468889988876 55569999999999999984 333
Q ss_pred eEeeeecCCcc-cCCCceEEEEEeCC-EEEEEECCCeEEEEE
Q 009274 496 FEEDVIPTGAI-PCGSVITALLYWQG-KLFVGCADRTVKVYY 535 (538)
Q Consensus 496 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~ 535 (538)
......|.... ..-....+++-++. .+++|-.-..|-|+|
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33333332221 12233444454543 455676666677765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-16 Score=156.90 Aligned_cols=287 Identities=18% Similarity=0.278 Sum_probs=194.1
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecC---CcCeEEEEEec-CCCCEEEEEcCCCcEEEEEcc
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGH---DHKVMAVVYVD-EDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~ 323 (538)
+...+-..+.|+ ...++++...-.|++||.+.++.+..|..+ ...|+.+.+.+ ++..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 333445566777 778888887779999999999998887654 35788888875 456688999999999999744
Q ss_pred CC--CCCcceeeecccCCc-----eeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEe---C
Q 009274 324 FP--LGHEPLKKWNEEKDW-----RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHKSAVSTLAVC---N 392 (538)
Q Consensus 324 ~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~ 392 (538)
.. +..+.+..+..-.+. ....+..|.....+|++++.-..|+|||......+..+. +....|+++.-+ +
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 33 233333333322211 112344555455577777778999999998877777764 345567777766 6
Q ss_pred CEEEEEecCCcEEEEECCCCce---eEEEecCCCCceEEEEEEcCCCC-EEEEEeCCCcEEEEeCCc-cee---eecccc
Q 009274 393 GVLYSGSRDGTIRLWSLSDHSL---LTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRNDK-FMK---SMQTHK 464 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~---~~~~h~ 464 (538)
+.+++|..||.|++||.+.... +...+.|.......-+.+.++|- .|++|+.||.|++||++. ... .+..|.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 7999999999999999987543 44555443331122256666554 499999999999999765 221 222232
Q ss_pred --c-eEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCccc-CCCceEEEEEeCCE--EEEEECCCeEEEEEc
Q 009274 465 --G-SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIP-CGSVITALLYWQGK--LFVGCADRTVKVYYY 536 (538)
Q Consensus 465 --~-~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--l~sg~~dg~v~vw~~ 536 (538)
+ ..+++.. +...+++|+. +.|+||++.+..+.......+... ......++.++.-+ +++|+.|..|.||..
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 3 3666655 7889999998 999999998876544333322211 11233555555443 677999999999975
Q ss_pred C
Q 009274 537 G 537 (538)
Q Consensus 537 ~ 537 (538)
.
T Consensus 1381 ~ 1381 (1387)
T KOG1517|consen 1381 E 1381 (1387)
T ss_pred C
Confidence 4
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=144.16 Aligned_cols=205 Identities=15% Similarity=0.269 Sum_probs=153.6
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC----cceeeecccCCceeeeEEEEeec-CCEEEEeeCC
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH----EPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGD 361 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~d 361 (538)
.+.+|+++|..++|+|.+...+++|+.|.+|.||++-..... .++..+..|. ....++.++|. .+.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeecccchhhHhhccCC
Confidence 456899999999999999999999999999999998754432 2333444443 33445677775 4589999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE
Q 009274 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439 (538)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 439 (538)
.+|.+||+.+++.+.++. |.+.|+++.|+ ++++++.+.|..|+|||.++++.+..-..|. +......-|-.++..+
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-G~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-GAKPARAIFLASGKIF 231 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc-CCCcceeEEeccCcee
Confidence 999999999999988888 99999999999 6699999999999999999999998875553 3333334667778755
Q ss_pred EEEe---CCCcEEEEeCCc---c--eeeeccccceEEEE-EeCCCEEEEE-eCCCeEEEEecCCCe
Q 009274 440 VVSH---ESGSIKVWRNDK---F--MKSMQTHKGSVFAV-FLEGKWLFTG-GWDKTVSVQELAGDE 495 (538)
Q Consensus 440 ~~~~---~dg~i~iwd~~~---~--~~~~~~h~~~v~~~-~~~~~~l~sg-s~dg~v~iwd~~~~~ 495 (538)
-+|. .+..+-+||..+ + ...+....+-+.-+ ..|.+.++.+ -.|+.||-|.+....
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5553 478899998543 2 23344333333322 2255665554 469999999998766
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-14 Score=143.47 Aligned_cols=281 Identities=28% Similarity=0.490 Sum_probs=205.6
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc-eEEEEecCCc-CeEEEEE-ecCCCCEEEEEc-CCCcEEEE
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDH-KVMAVVY-VDEDQPLCISGD-SGGGIFVW 320 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~-~v~~l~~-~~~~~~~l~s~~-~dg~i~vw 320 (538)
.+..|...+.++.+. +..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .++...+++..+ .|+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999998 8888888899999999998876 6777776443 7777777 665553455544 49999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLY 396 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~ 396 (538)
+.... .........+.. .....++++++..+++++. |+.+++|++..+..+..+.+|...|.+++|+ +. .++
T Consensus 140 ~~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 140 DLSTP--GKLIRTLEGHSE--SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EecCC--CeEEEEEecCcc--cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99851 112222222222 1225688899988888885 9999999999988999999999999999999 33 455
Q ss_pred EEecCCcEEEEECCCCceeE-EEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc---eeeeccccceEEEEEe
Q 009274 397 SGSRDGTIRLWSLSDHSLLT-VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF---MKSMQTHKGSVFAVFL 472 (538)
Q Consensus 397 s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~h~~~v~~~~~ 472 (538)
+++.|+.|++||...+.... .+..+.... . ..+++++..+++++.|+.+++|+.... ...+..|...+.++.+
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcce-e--EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 55999999999999777777 455554332 2 279999989999999999999996532 3344678888988877
Q ss_pred --CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-C-CEEEEE-ECCCeEEEEEcC
Q 009274 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-Q-GKLFVG-CADRTVKVYYYG 537 (538)
Q Consensus 473 --~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~sg-~~dg~v~vw~~~ 537 (538)
++..+++++.|+.+++||........... ...+...+..+.+. + ..++.+ ..|+.+.+|++.
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLT---LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEee---ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 56888889999999999998876554443 11122233333333 2 355555 688999999875
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=154.02 Aligned_cols=247 Identities=23% Similarity=0.349 Sum_probs=175.0
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC--------CCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCc
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--------DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 316 (538)
++..|.+.|+.++|+ ...|++++.||++++|+++ .-+++.+|.+|.++|.|+++.+ +...+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCce
Confidence 577899999999998 8999999999999999993 2367889999999999999966 5567799999999
Q ss_pred EEEEEccCCCCC-------cceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCC--CCCeEE
Q 009274 317 IFVWSFSFPLGH-------EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH--KSAVST 387 (538)
Q Consensus 317 i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~ 387 (538)
|+.|++...... .....+.++.+ .....+++.....|++++.||+++.|+.....+ .++... .+.-.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd--avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD--AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc--ceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999977522111 11112222222 112346777777899999999999999876655 333222 222345
Q ss_pred EEEeCC---EEEEEecCCcEEEEECCCCceeEEEecCCCC-----ceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcce
Q 009274 388 LAVCNG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG-----AVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFM 457 (538)
Q Consensus 388 l~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~ 457 (538)
+.+-.. +.++...-+.--+.++.....+..+...... .....+...|...+.+++..|+.|+++| ..+++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 555422 3333333333344444444444444322111 1122356778889999999999999999 45688
Q ss_pred eeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeE
Q 009274 458 KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFE 497 (538)
Q Consensus 458 ~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~ 497 (538)
.....|...++++++ +|-+|++++.||.+++|.+....+.
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 888899999998876 8999999999999999999766543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=137.35 Aligned_cols=243 Identities=17% Similarity=0.223 Sum_probs=171.1
Q ss_pred EEeecCCCcEEEEEEc---CCEEEEEeCC-------CcEEEEeCCCC---------ceEEEEe-cCCcCeEEEEEecCCC
Q 009274 246 KDLQGHRDCVTGLAVG---GGFLFSSSFD-------KSIHVWSLKDF---------SHVHTFK-GHDHKVMAVVYVDEDQ 305 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~---~~~l~s~s~d-------g~i~iwd~~~~---------~~~~~~~-~h~~~v~~l~~~~~~~ 305 (538)
..|..|.+.|+.++-+ .+.|+|+..| -.+-||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4467788999999887 5667776553 24679987532 2333443 3556899999999666
Q ss_pred CEEEEEcCCCcEEEEEccCCCCC-cceeeecccCCceeeeEEEEee--cCCEEEEeeCCCcEEEEECCCCceeEEe-cCC
Q 009274 306 PLCISGDSGGGIFVWSFSFPLGH-EPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDRTIKAWSLLDGTLSCTM-SGH 381 (538)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h 381 (538)
++ ++-. |..|.+|++...... ..+..............-.++| +++.+++. .|+++..||+++.+....+ ..|
T Consensus 137 kl-asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 137 KL-ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred ee-EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 55 3333 899999999876552 2222211111112222335565 56666665 5799999999998877766 578
Q ss_pred CCCeEEEEEeCC---EEEEEecCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCC-CCEEEEEeCCCcEEEEeCC--
Q 009274 382 KSAVSTLAVCNG---VLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND-- 454 (538)
Q Consensus 382 ~~~v~~l~~~~~---~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~-- 454 (538)
...|..+.|+++ +|++|+.||.|++||.+.-+ ++..+..| .-.+.+ +.|+|. .+++++|+.|..|.+|...
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-sHWvW~-VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-SHWVWA-VRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-ceEEEE-EEecCccceEEEecCCCceeEEEecccc
Confidence 889999999944 89999999999999998755 45555544 333444 577764 5688899999999999421
Q ss_pred -----------------------------cceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCC
Q 009274 455 -----------------------------KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 455 -----------------------------~~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~ 493 (538)
..+.++..|...|++++| |.-.+++-+.||.+.|=.+..
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 123467779999999998 677899999999998876643
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-18 Score=150.92 Aligned_cols=113 Identities=19% Similarity=0.356 Sum_probs=80.7
Q ss_pred eeeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 10 TKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
.++++|+| ||||-+..+.+ +.++++|||.|||||.+ .+ ..|+++||||||||++|||+.=+
T Consensus 163 ~~gvvKLGDfGL~r~l~s~~t--fA~S~VGTPyYMSPE~i------~~---------~~Y~~kSDiWslGCllyEMcaL~ 225 (375)
T KOG0591|consen 163 ANGVVKLGDFGLGRFLSSKTT--FAHSLVGTPYYMSPERI------HE---------SGYNFKSDIWSLGCLLYEMCALQ 225 (375)
T ss_pred CCCceeeccchhHhHhcchhH--HHHhhcCCCcccCHHHH------hc---------CCCCcchhHHHHHHHHHHHHhcC
Confidence 46899999 88888887643 57899999999999999 33 56779999999999999999999
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
||.+.+...+- .+..+- ..++.+.+.-+. .+.+++..|++.+|++||....+
T Consensus 226 ~PF~g~n~~~L~-~KI~qg-------d~~~~p~~~YS~-----------~l~~li~~ci~vd~~~RP~t~~~ 278 (375)
T KOG0591|consen 226 SPFYGDNLLSLC-KKIEQG-------DYPPLPDEHYST-----------DLRELINMCIAVDPEQRPDTVPY 278 (375)
T ss_pred CCcccccHHHHH-HHHHcC-------CCCCCcHHHhhh-----------HHHHHHHHHccCCcccCCCcchH
Confidence 99997443211 111111 111111111111 26779999999999999985433
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-13 Score=136.31 Aligned_cols=285 Identities=29% Similarity=0.463 Sum_probs=200.8
Q ss_pred eEEEEEeecCCCcEEEEEEc--CCEEEEEeC-CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSF-DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
......+.+|...|.+++|+ +..+++++. |+.+++|+..++..+..+.+|...|.+++|+|++..++++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 34555678899999999999 668888885 999999999998999999999999999999976664666669999999
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEeC--CEE
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL-SCTMSGHKSAVSTLAVCN--GVL 395 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~--~~l 395 (538)
+||...+..... ....+... . +..+++++..+++++.|+.+++||.+.... ...+.+|...+.++.|.+ ..+
T Consensus 225 ~wd~~~~~~~~~--~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 225 LWDLSTGKLLRS--TLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEECCCCcEEee--ecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 997763222211 22222221 1 227888888888999999999999987664 444467899999999984 577
Q ss_pred EEEecCCcEEEEECCCCceeEEEe-cCCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCCcce--eeeccccceEEEEE
Q 009274 396 YSGSRDGTIRLWSLSDHSLLTVLE-EDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKFM--KSMQTHKGSVFAVF 471 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~h~~~v~~~~ 471 (538)
++++.|+.+.+||..+........ ..+...+.. +.+.+++..++.+ ..|+.+.+|+..... ....... .+..+.
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 377 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS-LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVS 377 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEE-EEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEE
Confidence 779999999999998887766665 222333333 4554443556555 688999999965543 2222222 155555
Q ss_pred e-CCCEEEE-EeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEEEcC
Q 009274 472 L-EGKWLFT-GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 472 ~-~~~~l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~~~ 537 (538)
+ ....+.. +..++.+.+|+.............. .........+++ .+++++.++.+++|+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT----SRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ECCCCCEEEEecCCCceEEEecccCeeeeeccCCC----CcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 4 2233443 6889999999999887655444321 223333333444 46668999999999875
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=150.20 Aligned_cols=283 Identities=17% Similarity=0.176 Sum_probs=205.4
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCcCeEEEEEecC-CCCEEEEEcCCCcEEEEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd 321 (538)
..|.+|.+.|+.+.|+ |..+++||.|..|.+||+.+++....+. +|...|..-.|.|. +..-+++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 4588999999999999 9999999999999999999988877765 69999988889885 345678999999999987
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCceeEEe---cCCCC---CeEEEEEe---
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKS---AVSTLAVC--- 391 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~---~v~~l~~~--- 391 (538)
+...+.....+....+... ...+++-|+ ...|.+++.|+.+.-+|++++.+...+ ..+.. ..++++..
T Consensus 216 i~~t~~~e~t~rl~~h~g~--vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGP--VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eccccceecceecccccCc--cceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7654444333333333321 113355554 448999999999999999987654433 23333 45677776
Q ss_pred CCEEEEEecCCcEEEEECCCCce------eEEEecCC----CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-------
Q 009274 392 NGVLYSGSRDGTIRLWSLSDHSL------LTVLEEDS----SGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------- 454 (538)
Q Consensus 392 ~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------- 454 (538)
.+.+++++.|..+++||.+.-.. +.++..++ ....+.++.++.++.-+.++..|-.|+++...
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 44899999999999999975322 22222221 22233447899888888888889999999521
Q ss_pred -------ccee-eeccccc--eEEEEEe---CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe--C
Q 009274 455 -------KFMK-SMQTHKG--SVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--Q 519 (538)
Q Consensus 455 -------~~~~-~~~~h~~--~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 519 (538)
.... .+++|.. .|..+.| ...++++||.-|.|.||+-.++++...+.... .+++|+-.. .
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr-----~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR-----HVVNCLEPHPHL 448 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc-----ceEeccCCCCCC
Confidence 1122 3788865 4666766 56899999999999999999988766554432 277777665 3
Q ss_pred CEEEEEECCCeEEEEE
Q 009274 520 GKLFVGCADRTVKVYY 535 (538)
Q Consensus 520 ~~l~sg~~dg~v~vw~ 535 (538)
-.|++.+-|..|+||-
T Consensus 449 PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWT 464 (559)
T ss_pred chhhccCCccceeeec
Confidence 4588899999999995
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-15 Score=137.78 Aligned_cols=268 Identities=12% Similarity=0.178 Sum_probs=196.3
Q ss_pred CCCCCccceeeeeccCcceeEEeecCCeEEEEEeecC-----------CCcEEEEEEc--CC-EEEEEeCCCcEEEEeCC
Q 009274 215 ENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGH-----------RDCVTGLAVG--GG-FLFSSSFDKSIHVWSLK 280 (538)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~h-----------~~~V~~l~~~--~~-~l~s~s~dg~i~iwd~~ 280 (538)
..+....+.++.+.+.-..++++..++.++++.+.|. ..+|.+.+|. |. .+++++.....+.||+.
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 3444566889999999999999999999999998764 3578888887 66 89999999999999998
Q ss_pred CCceEE--EEecCC-cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEE
Q 009274 281 DFSHVH--TFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357 (538)
Q Consensus 281 ~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (538)
+.+..+ .+.++. ..+.....+++++ +++..+..|.|.+....++.....++.. ....-.+|+.+++.|++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIE------GVVSDFTFSSDSKELLA 361 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeec------cEEeeEEEecCCcEEEE
Confidence 876543 233443 3455666777554 8899999999999988776554444332 12223477788899999
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCCCeE--EEEEe--CCEEEEEecCCcEEEEECCC------CceeEEEecCCCCceE
Q 009274 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVS--TLAVC--NGVLYSGSRDGTIRLWSLSD------HSLLTVLEEDSSGAVS 427 (538)
Q Consensus 358 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~l~~~--~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~~~~~~~~ 427 (538)
++.+|.|.+||+++..+++.+.. .+.|. +++.+ +.++++||..|.|.|||..+ .+++..+..- ....
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~I 438 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAI 438 (514)
T ss_pred EcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heee
Confidence 99999999999999999988863 33333 34444 67999999999999999754 2344443322 1223
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEeCCcc--eeeecc---ccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 428 SVLSLTAVQHTLVVSHE--SGSIKVWRNDKF--MKSMQT---HKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 428 ~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~--~~~~~~---h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+.+.|+++.++|+.++. +..+++-....+ ...+.. .-+.++|++| .+.+|+.|..+|.+.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 44799999999998875 567887764432 222222 3345677776 89999999999999999874
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-15 Score=135.68 Aligned_cols=278 Identities=20% Similarity=0.212 Sum_probs=184.0
Q ss_pred CCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC---------ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 252 RDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF---------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 252 ~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
..+|.++.|. .+.++||+.|..|++|.++.+ +....+..|...|+++.|+|+++ ++++|+.+|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEE
Confidence 3678889887 458999999999999987532 22445678999999999999554 7899999999999
Q ss_pred EEccCCCC------------Cccee-eecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeE
Q 009274 320 WSFSFPLG------------HEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386 (538)
Q Consensus 320 wd~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 386 (538)
|....... ..... ....+.. ..--.+++++++++++++.|..+++||+..|+....+..|...|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~--diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD--DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc--chhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 98662111 00011 1111111 111247889999999999999999999999999999999999999
Q ss_pred EEEEe--CCEEEEEecCCcEEEEECCCCceeEEEe---------cCCCCc------------eEEEEEEcCCCCEEEEEe
Q 009274 387 TLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLE---------EDSSGA------------VSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 387 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~l~~~~ 443 (538)
.++|. +.++++-+.|...+.+++...+.+.... .+..+. ....++|+|+|.++++..
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999 7799999999887777776544332221 000111 112257899999988754
Q ss_pred C----CC-----cEEEEe---CCcceeeeccccceEEEEE---------e-----------CCCEEEEEeCCCeEEEEec
Q 009274 444 E----SG-----SIKVWR---NDKFMKSMQTHKGSVFAVF---------L-----------EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 444 ~----dg-----~i~iwd---~~~~~~~~~~h~~~v~~~~---------~-----------~~~~l~sgs~dg~v~iwd~ 491 (538)
. .+ ..++|+ +..+...+.+...+...+. + .+-.++.++ .+.|++||.
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydt 328 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDT 328 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecc
Confidence 2 22 234554 3344444444333333221 1 122344444 568999999
Q ss_pred CCCeeEeeeecCCcccCCCceEEEEEe-CC-EEEEEECCCeEEEEEcC
Q 009274 492 AGDEFEEDVIPTGAIPCGSVITALLYW-QG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~sg~~dg~v~vw~~~ 537 (538)
++.......... +-..++.++|. |+ .++..+.||...+--|+
T Consensus 329 q~~~P~~~v~ni----hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 329 QTLEPLAVVDNI----HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ccccceEEEeee----eeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 886654433322 33345555555 44 47889999987765543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-15 Score=152.17 Aligned_cols=253 Identities=17% Similarity=0.225 Sum_probs=172.3
Q ss_pred CCeEEEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC-------CceEEEEecCCcCeEEEEEecCCCCEEE
Q 009274 240 KGNVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-------FSHVHTFKGHDHKVMAVVYVDEDQPLCI 309 (538)
Q Consensus 240 ~~~~~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 309 (538)
..++.+..+..|...|..++.+ +.+++|||.||+|++||... .+...++..-...+.++...+.+. .+|
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEE
Confidence 3457788899999999999998 58999999999999999753 123344444567888888887555 557
Q ss_pred EEcCCCcEEEEEccCCCCCcc----eeeecccCCceeeeEEEEeec-CC-EEEEeeCCCcEEEEECCCCceeEEec--CC
Q 009274 310 SGDSGGGIFVWSFSFPLGHEP----LKKWNEEKDWRYSGIHALTTS-GR-YLYTGSGDRTIKAWSLLDGTLSCTMS--GH 381 (538)
Q Consensus 310 s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~-~l~sg~~dg~i~iwd~~~~~~~~~~~--~h 381 (538)
.++.||.|++.+++....... ....+.+.......+.++... +. .++.+..-+.|..||+++....++++ ..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 779999999999876322111 111222222222333333332 33 78888888999999999887776664 34
Q ss_pred CCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEc---CCCCEEEEEe--CCCcEEEEeCC
Q 009274 382 KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT---AVQHTLVVSH--ESGSIKVWRND 454 (538)
Q Consensus 382 ~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~--~dg~i~iwd~~ 454 (538)
.+.|++++.+ .+.++.|...|.+.+||+|-+.++..+..+....+.. ++.. +.....++++ ..+.|.+|+..
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~-v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRH-VWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcce-EEeeccCCCCceEEEecccCCCceeeeecc
Confidence 5789999998 6699999999999999999999988887665554444 2333 3334555544 47889999844
Q ss_pred c--ceeeeccc-----------------cc---eEEE-EEeCCCEEEEEeCCCeEEEEecCCC
Q 009274 455 K--FMKSMQTH-----------------KG---SVFA-VFLEGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 455 ~--~~~~~~~h-----------------~~---~v~~-~~~~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
+ ....+-.. .. .+.+ +.-.+..+.+|+.|..|+.||....
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 2 11111110 01 1111 1225678999999999999997543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=146.98 Aligned_cols=247 Identities=19% Similarity=0.253 Sum_probs=176.3
Q ss_pred cCcceeEEeecCCeEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCcCeEEEEEecCCC
Q 009274 229 GGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQ 305 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~ 305 (538)
.+++.++-...+|. .+.+++||++.|.|++|+ |+.+++|+.|..|.+|+-+- ...++ .|.+.|.|+.|+|-+.
T Consensus 31 Ag~rlliyD~ndG~-llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h 106 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGT-LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITH 106 (1081)
T ss_pred cCCEEEEEeCCCcc-cccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHH
Confidence 34444444444444 578899999999999999 99999999999999998532 22222 5999999999998554
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe---cCCC
Q 009274 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHK 382 (538)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~ 382 (538)
.+++++. ...-+|...... + ..+........++|..||.+++.|-.+|+|.+-+- +++....+ .|.+
T Consensus 107 -~LasCsL-sdFglWS~~qK~----V---~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 107 -QLASCSL-SDFGLWSPEQKS----V---SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSN 176 (1081)
T ss_pred -Hhhhcch-hhccccChhhhh----H---HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCC
Confidence 4566654 344567654221 1 11111133345578889999999999999999874 45444333 3577
Q ss_pred CCeEEEEEe-------CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 009274 383 SAVSTLAVC-------NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND- 454 (538)
Q Consensus 383 ~~v~~l~~~-------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~- 454 (538)
++|.+++|+ ++.+++.....++.++.+. |+.+..-+. -+.-..++.+.++|.++..|+.|+.+++|...
T Consensus 177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc--CCCCchhheeccCCcEEEEccCCCceEEEeecC
Confidence 899999998 2388889999999999885 333332111 11223347888999999999999999999733
Q ss_pred cceeeeccccceEEEEE--eCCCEEEEEeCCCeEEEEecC
Q 009274 455 KFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 455 ~~~~~~~~h~~~v~~~~--~~~~~l~sgs~dg~v~iwd~~ 492 (538)
-.+.++.....+|+.+. |++++++.|+.||+|..|++.
T Consensus 254 vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 254 VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 34455555667888775 599999999999999999874
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-15 Score=131.14 Aligned_cols=256 Identities=17% Similarity=0.195 Sum_probs=182.6
Q ss_pred eeeccCcceeEEeecCCeEEEEEeec----------------------CCCcEEEEEEc---------CCEEEEEeCCCc
Q 009274 225 ARAAGGVKDLVNGLSKGNVKFKDLQG----------------------HRDCVTGLAVG---------GGFLFSSSFDKS 273 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~l~~----------------------h~~~V~~l~~~---------~~~l~s~s~dg~ 273 (538)
...++++.-+++...+....+|++.. ....|...+|- ..++++.+.|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 34455666666666666666666421 12345555552 578999999999
Q ss_pred EEEEeCCCCceEEEEec--CCc---CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce-eeecc--cCCceeeeE
Q 009274 274 IHVWSLKDFSHVHTFKG--HDH---KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL-KKWNE--EKDWRYSGI 345 (538)
Q Consensus 274 i~iwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~--~~~~~~~~~ 345 (538)
|++||.-+|+....+.+ |.. ...+++|+|++..++ ++....|+++|+..+...... ..... .....+.++
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 99999999998887764 333 457899999887653 456799999999544332222 22211 111234456
Q ss_pred EEEeecC-CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec-CCcEEEEECCCC-ceeEEEec
Q 009274 346 HALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR-DGTIRLWSLSDH-SLLTVLEE 420 (538)
Q Consensus 346 ~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~~-~~~~~~~~ 420 (538)
.+++|.. ..++.|+....+-||.-..+.++..+.+|.+.|+.+.|. ++.|++|+. |..|.+||+|.. .++..+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 6777754 499999999999999988999999999999999999999 678888875 788999999864 45555554
Q ss_pred CCC-CceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc---ceeeeccccceEEEEEeCC--CEEEEEeC
Q 009274 421 DSS-GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFLEG--KWLFTGGW 482 (538)
Q Consensus 421 ~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~~~--~~l~sgs~ 482 (538)
+.. ....-.+...|++++|++|+.||.|++||+.. ....+..|...++.++.+. .++++++.
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 433 11222256779999999999999999999665 4566777888888888744 45555553
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-15 Score=129.55 Aligned_cols=264 Identities=18% Similarity=0.248 Sum_probs=182.7
Q ss_pred CCCcEEEEeCCCCce---EEEEecCCcCeEEEEEecCCCCEEEEEcCC-------CcEEEEEccCCCCCcc------eee
Q 009274 270 FDKSIHVWSLKDFSH---VHTFKGHDHKVMAVVYVDEDQPLCISGDSG-------GGIFVWSFSFPLGHEP------LKK 333 (538)
Q Consensus 270 ~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~------~~~ 333 (538)
.|+.|.+.+++.... .+.|..|.+.|..++-+|.+..+|+++..+ ..+.||.+..+..... +..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 367788877765432 245667889999999999999999988653 2467999875543311 111
Q ss_pred ecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce-eEEec-----CCCCCeEEEEEe---CCEEEEEecCCcE
Q 009274 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL-SCTMS-----GHKSAVSTLAVC---NGVLYSGSRDGTI 404 (538)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~-----~h~~~v~~l~~~---~~~l~s~s~dg~i 404 (538)
...... ....++.+.|++..+++-. |..|.+|++..+.. +..+. +|....++-+|+ ++.-+....|+++
T Consensus 118 Ldteav-g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 118 LDTEAV-GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CCHHHh-CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcE
Confidence 111111 1234667888888888765 78999999987665 33332 355667788887 3444555568999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCC-EEEEEeCCCcEEEEeCCc---ceeeeccccceEEEEEe---CCCEE
Q 009274 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGKWL 477 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~---~~~~l 477 (538)
..||+++.+....+...|...+.. +.|+|+.+ +|++|+.||.|++||+++ +++.+.+|.-+|+++.| ..+++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrd-lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRD-LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEEccchhhhcchhhhhcceeee-ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 999999998888887766554544 68888764 688899999999999664 78889999999999987 67899
Q ss_pred EEEeCCCeEEEEecCCCee--------------------EeeeecCC----cccCCCceEEEEEe--CCE-EEEEECCCe
Q 009274 478 FTGGWDKTVSVQELAGDEF--------------------EEDVIPTG----AIPCGSVITALLYW--QGK-LFVGCADRT 530 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~~~~~--------------------~~~~~~~~----~~~~~~~~~~~~~~--~~~-l~sg~~dg~ 530 (538)
++||.|..|.+|....-.. .......+ .-.+...+.++.|+ |.. +++-+.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 9999999999996532110 00000010 01234456666665 444 566899999
Q ss_pred EEEEEc
Q 009274 531 VKVYYY 536 (538)
Q Consensus 531 v~vw~~ 536 (538)
+.|=++
T Consensus 355 viIs~V 360 (370)
T KOG1007|consen 355 VIISSV 360 (370)
T ss_pred EEeecC
Confidence 987554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=135.08 Aligned_cols=257 Identities=16% Similarity=0.206 Sum_probs=175.6
Q ss_pred ceeEEeecCCeEEEEE---------eecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCceEEE--EecCC-cCe
Q 009274 232 KDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSHVHT--FKGHD-HKV 295 (538)
Q Consensus 232 ~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~-~~v 295 (538)
..++++.++|.+++++ +++|...++.+.|. +..+.+|+.||+|++||+.+...... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4567777777777765 67899999999886 67899999999999999987655443 34454 345
Q ss_pred EEEEEecCCCCEEEEEc----CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECC
Q 009274 296 MAVVYVDEDQPLCISGD----SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLL 370 (538)
Q Consensus 296 ~~l~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~ 370 (538)
.+++-. ....++++|. .|-.+.+||++..+.. +..+...+...... +.|+| +.+.|++||.||.|.+||+.
T Consensus 121 ~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~-lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 121 ICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQ-LRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred eEeecc-CcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCccee-EEecCCCCCeEEeecccceEEeeecC
Confidence 555543 2455667765 4678999999865432 44444443334443 35666 56699999999999999987
Q ss_pred CCce---eEEecCCCCCeEEEEEe-CC--EEEEEecCCcEEEEECCCCceeEEEecCCC---------CceEEEEEEcC-
Q 009274 371 DGTL---SCTMSGHKSAVSTLAVC-NG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSS---------GAVSSVLSLTA- 434 (538)
Q Consensus 371 ~~~~---~~~~~~h~~~v~~l~~~-~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~- 434 (538)
.... +...-.|...|.++.|. ++ .+.+-+...+..+|++..+.....+..... ..-..+-..+|
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 5432 22233477889999999 44 789999999999999998886555443210 00011112323
Q ss_pred CCCEEEEEeC-CCcEEEEe--------CCcceeeecc-ccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 435 VQHTLVVSHE-SGSIKVWR--------NDKFMKSMQT-HKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 435 ~~~~l~~~~~-dg~i~iwd--------~~~~~~~~~~-h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+....+.++. -|+..++- ..+....+++ |...|.++.| .+..++|||.||.+.+|...
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3445555544 56666553 2235556666 6677778877 68899999999999999964
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=137.41 Aligned_cols=288 Identities=10% Similarity=0.058 Sum_probs=189.4
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC------CCceEEEEe-cCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK------DFSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~------~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
+-.++.+|.+.|+++.|+ +++|++|+.|..+++|+++ +.+++.... .|...|.|++|.. ++..+++|..+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCc
Confidence 345678999999999999 9999999999999999985 335555443 3568999999965 67788999999
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc-eeE--EecCCCCCeEEEEEe
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT-LSC--TMSGHKSAVSTLAVC 391 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~--~~~~h~~~v~~l~~~ 391 (538)
++|..-|+++......... ........-+..+|-.+.+++.+.++.|.+||.+... .+. .+........++.|+
T Consensus 127 ~~VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANE---NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred ceeEeeecccceeeeeecc---cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 9999999987654332222 1111111234566778899999999999999998654 222 223345567788888
Q ss_pred ---CCEEEEEecCCcEEEEECCCCce-eEEEec----CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeecc
Q 009274 392 ---NGVLYSGSRDGTIRLWSLSDHSL-LTVLEE----DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQT 462 (538)
Q Consensus 392 ---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 462 (538)
+.+|++.+..+-+.+||.+.... +..... .....-.....|+|+|+.+++--....-.+||.-. ....++.
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 56999999999999999986542 211111 11111112257899999988877666667788432 2222222
Q ss_pred -cc-------ceEEEEEe-CCCEEEEEeCCCeEEEEecCCCeeEee---eec-----------CCc----ccCCCceEEE
Q 009274 463 -HK-------GSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEED---VIP-----------TGA----IPCGSVITAL 515 (538)
Q Consensus 463 -h~-------~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~---~~~-----------~~~----~~~~~~~~~~ 515 (538)
|. ..+.+++| +...+++|+.+=.|++|.+.......- ..+ .+. ..+.+++.-+
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 22 24556677 677799999999999998853211000 000 000 0123344433
Q ss_pred EE-e-CCEEEEEECCCeEEEEE
Q 009274 516 LY-W-QGKLFVGCADRTVKVYY 535 (538)
Q Consensus 516 ~~-~-~~~l~sg~~dg~v~vw~ 535 (538)
-+ + +..|++.+-.+.+++|.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 33 3 33466688899999996
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-13 Score=125.59 Aligned_cols=196 Identities=15% Similarity=0.204 Sum_probs=153.4
Q ss_pred CcEEEEEEcCCEEEEEeCCCc--EEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 253 DCVTGLAVGGGFLFSSSFDKS--IHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 253 ~~V~~l~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
..|-..-|+..++|..+.+.. +++.+...+..+..+. ...+|.++.++. +.++.+=. ..|+|||+++.+....
T Consensus 47 ~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhT 121 (391)
T KOG2110|consen 47 VSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHT 121 (391)
T ss_pred eEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehh
Confidence 355566677888877776644 8999988887777665 456899999843 33444433 3499999998877777
Q ss_pred eeeecccCCceeeeEEEEeecCC--EEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCc-
Q 009274 331 LKKWNEEKDWRYSGIHALTTSGR--YLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGT- 403 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~- 403 (538)
+.....+ ...+++++++.. +++.-+ ..|.|.+||..+-+++..+..|++++-+++|+ +.+|+++|..|+
T Consensus 122 I~t~~~n----~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 122 IETTPPN----PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred hhccCCC----ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE
Confidence 7665332 234667777654 666533 36899999999999999999999999999999 669999999998
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcce
Q 009274 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM 457 (538)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 457 (538)
||++.+.+|+.+..++..........++|++++.+|++.+..++|++|.+.+..
T Consensus 198 IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 198 IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 799999999999999876665556668999999999999999999999876533
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=144.23 Aligned_cols=261 Identities=17% Similarity=0.208 Sum_probs=176.0
Q ss_pred CCcEEEEeCCCC-ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC--CcceeeecccCCceeeeEEE
Q 009274 271 DKSIHVWSLKDF-SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG--HEPLKKWNEEKDWRYSGIHA 347 (538)
Q Consensus 271 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 347 (538)
++.+.+|++.+. .+...+. -...|.++.|+|.+..+++.|..+|.|.+||++.... ...+......+......+..
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 347999999876 3334443 5678999999999999999999999999999987765 22332222222212221211
Q ss_pred E-eecCCEEEEeeCCCcEEEEECCCCce-eEE-----ec------CCCCCeEEEEEe---CCEEEEEecCCcEEEEECCC
Q 009274 348 L-TTSGRYLYTGSGDRTIKAWSLLDGTL-SCT-----MS------GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSD 411 (538)
Q Consensus 348 ~-~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~-----~~------~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~ 411 (538)
. +..+.-+++++.||.|..|+++.-.. ... .. .....+++++|. ++.++.|+.+|.|.--+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 1 12234699999999999999875432 111 11 122367888888 56999999999998744333
Q ss_pred CceeE--------EEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe---CCCEE
Q 009274 412 HSLLT--------VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL---EGKWL 477 (538)
Q Consensus 412 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~---~~~~l 477 (538)
.+... .+. .+.+.+.. +.++|-+..++..+.|.+++||... .++..+..+...+++++| ....+
T Consensus 380 ~~~~~~~~~~~~~~~~-~h~g~v~~-v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFI-THIGPVYA-VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred Cccccccccccccccc-ccCcceEe-eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 22211 222 22444444 5777766655555559999999844 577777888888999988 55689
Q ss_pred EEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeC-CE-EEEEECCCeEEEEEcC
Q 009274 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~sg~~dg~v~vw~~~ 537 (538)
+++..||.+.+||+............. +..+...+.++. +. +++|...|.+++|+++
T Consensus 458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~---~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDEEPVLSQKV---CSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EEEcCCCceehhhhhccccCCcccccc---cccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999999999999997665443333322 234556666654 65 6679999999999985
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-17 Score=159.67 Aligned_cols=269 Identities=16% Similarity=0.284 Sum_probs=190.8
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
.+.||..+|.|..|. |.++++|+.|..|+||..+++.++....+|.+.|+.++.+. ++.++++++.|..|++|.+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 467999999999999 99999999999999999999999999999999999999865 566778999999999999887
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe----c-CCCCCeEEEEEe--CCEEEE
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM----S-GHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~----~-~h~~~v~~l~~~--~~~l~s 397 (538)
+.....+.. +...+.++...... +.+.||++++||.+- .++... + ...+.+.++.|. ..-+++
T Consensus 264 ~~pvsvLrg-------htgavtaiafsP~~--sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 264 GAPVSVLRG-------HTGAVTAIAFSPRA--SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred CchHHHHhc-------cccceeeeccCccc--cCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccccccc
Confidence 665554444 22345667766654 778899999999872 211111 1 122445566665 447889
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEe---
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--- 472 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--- 472 (538)
++.|+.-..|.+..-..- ......+...+....+.+++-.+-.+++|++ +.....+.+|...+..+.+
T Consensus 334 gs~d~ea~n~e~~~l~~~-------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWR-------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred ccCCcccccchhhHhhhh-------ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 999998888866432110 0001110111111245666777788899994 4467788888888777654
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEcC
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
+.....+++.||...|||+-.+....... ..+...+.+.|+.||. ++....-|.++|...+
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~----~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYF----IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeee----cccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 88889999999999999998776544433 2255667777777776 4455566778776543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-14 Score=140.13 Aligned_cols=283 Identities=16% Similarity=0.199 Sum_probs=194.5
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC----CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
..|.-.++|.+++ ++++++|..||.|.+|.--. ......+.=|..+|.+++|++++. ++++|+..|.+.+|.+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEee
Confidence 3477778999999 99999999999999996322 233556777999999999999665 6799999999999999
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC 391 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~ 391 (538)
.+++ .+.+..... ...-..+++|+++.+....|..|.+....+.+...++.+- .+-.+.++++
T Consensus 281 ~T~~-kqfLPRLgs-----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGS-----PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred cCCC-cccccccCC-----eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 9877 333333222 1223477899999999999999999988666554444322 3345566666
Q ss_pred --CCEEEEEecCCcEEEEECCCCceeEEEec----CCCCc-----eEEEEEEcCCCCEEEEEe--------CCC--cEEE
Q 009274 392 --NGVLYSGSRDGTIRLWSLSDHSLLTVLEE----DSSGA-----VSSVLSLTAVQHTLVVSH--------ESG--SIKV 450 (538)
Q Consensus 392 --~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~l~~~~--------~dg--~i~i 450 (538)
.+.++-.+..|.|.+||+.+.+.+..+.. ...+. .....+.+..|.++++.- .|| .+++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 45788888999999999988776655532 11111 112234556688888863 233 4677
Q ss_pred EeCCcc-------eeeeccccceEEEEEe----CCCEEEEEeCCCeEEEEecCCCe------eEeeeecCCcccCCCceE
Q 009274 451 WRNDKF-------MKSMQTHKGSVFAVFL----EGKWLFTGGWDKTVSVQELAGDE------FEEDVIPTGAIPCGSVIT 513 (538)
Q Consensus 451 wd~~~~-------~~~~~~h~~~v~~~~~----~~~~l~sgs~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~ 513 (538)
|-.... ......|...+.+..+ .....++++.||.+++|-+.+.+ ..+.+...+..+......
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a 514 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA 514 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence 853221 1223457766655543 34489999999999999884332 233333333333333444
Q ss_pred EEEEeCCEEEEEECCCeEEEEEcCC
Q 009274 514 ALLYWQGKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 514 ~~~~~~~~l~sg~~dg~v~vw~~~~ 538 (538)
+++..||.+++.+.|++|.+||+.+
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecCCC
Confidence 5556699999999999999999854
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=136.06 Aligned_cols=261 Identities=15% Similarity=0.208 Sum_probs=190.5
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEeec--------CCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC------
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQG--------HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF------ 282 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--------h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~------ 282 (538)
..+.++...+.+..+++|+.+|.+++|.+.+ -.+.|.|++|+ ...++.++.+..+.|-+..-|
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVG 480 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhc
Confidence 4466777888999999999999999999754 35789999998 333444444444555442111
Q ss_pred -------------------------------ceEEEEecCCcCeEEEEEecCCCCEEEEEcC---CCcEEEEEccCCCCC
Q 009274 283 -------------------------------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDS---GGGIFVWSFSFPLGH 328 (538)
Q Consensus 283 -------------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~ 328 (538)
.-+...-.|...|..+.|+..+. +|++... ...|.|.++......
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~sQ 559 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRKSQ 559 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccccc
Confidence 00122234778999999998666 4455433 356888888765544
Q ss_pred cceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEE
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRL 406 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~i 406 (538)
.++....+ ......|+|...+|++++. ..|++||+...+.+..+......|.+++.+ ++.|+.|+.|+.+..
T Consensus 560 ~PF~kskG-----~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 560 SPFRKSKG-----LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred CchhhcCC-----ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence 44433222 1224577887788888877 689999999988888888788899999999 579999999999999
Q ss_pred EECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe------C-C----cceeeeccccce----EEEE
Q 009274 407 WSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR------N-D----KFMKSMQTHKGS----VFAV 470 (538)
Q Consensus 407 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd------~-~----~~~~~~~~h~~~----v~~~ 470 (538)
+|+.-. ++.+++..| ...+.. +++++.-.++++|+.||++.++. + . -+++.+.+|... |..+
T Consensus 634 fDldlsskPyk~lr~H-~~avr~-Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 634 FDLDLSSKPYKTLRLH-EKAVRS-VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEcccCcchhHHhhhh-hhhhhh-hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 999865 455555555 344444 58999889999999999999984 1 1 256788888766 7766
Q ss_pred Ee--CCCEEEEEeCCCeEEEE
Q 009274 471 FL--EGKWLFTGGWDKTVSVQ 489 (538)
Q Consensus 471 ~~--~~~~l~sgs~dg~v~iw 489 (538)
.| ...+|++++.||+|++|
T Consensus 712 ~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccCCCceEEecCCCceEEee
Confidence 66 77899999999999998
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-14 Score=119.87 Aligned_cols=194 Identities=16% Similarity=0.250 Sum_probs=141.0
Q ss_pred cEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 009274 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 254 ~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
.|+++... .+-++.++.|+.++-||+++|+...++++|++.|.++.--. ...-+++|+.||++++||.++.+....+
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEe
Confidence 45666665 45566666899999999999999999999999999998733 3445689999999999999998877766
Q ss_pred eeecccCCce---eeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEE
Q 009274 332 KKWNEEKDWR---YSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWS 408 (538)
Q Consensus 332 ~~~~~~~~~~---~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd 408 (538)
.......... ...+.++.-+.+.+++|+. ..+.+|++++.++...+. -..++..+.|.++.+++++..+.+.-|.
T Consensus 195 e~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred ccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeecceEEEeccccceeeee
Confidence 6554433211 2235678888889988765 679999999999888876 4677889999999999999999999998
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
+. |.........+......+...+| -+++-.++....+.++.
T Consensus 273 l~-Gvl~a~ip~~s~~c~s~s~~~~p-~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 273 LN-GVLQANIPVESTACYSASWQTSP-IKFISIAGFSNKLHILK 314 (325)
T ss_pred ec-cEEEEeccCCccceeeecccCCc-eEEEEecccceeeeeee
Confidence 74 44434443333322222222223 34566667777777764
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-16 Score=148.41 Aligned_cols=112 Identities=18% Similarity=0.330 Sum_probs=84.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|++ |+|-.+..... ...+|+|||.|||||++ ++ ..|+.++||||||++.|||++|. |
T Consensus 148 g~vkl~DfgVa~ql~~~~~--rr~tfvGTPfwMAPEVI------~~---------~~Y~~KADIWSLGITaiEla~GePP 210 (467)
T KOG0201|consen 148 GDVKLADFGVAGQLTNTVK--RRKTFVGTPFWMAPEVI------KQ---------SGYDTKADIWSLGITAIELAKGEPP 210 (467)
T ss_pred CcEEEEecceeeeeechhh--ccccccccccccchhhh------cc---------ccccchhhhhhhhHHHHHHhcCCCC
Confidence 678888 88877775543 24689999999999999 33 56889999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCcc-chHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEF-VSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
+....+...+++..++. .+.+...+ +++.+++..||.++|..||++.++.+.
T Consensus 211 ~s~~hPmrvlflIpk~~---------------------PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh 263 (467)
T KOG0201|consen 211 HSKLHPMRVLFLIPKSA---------------------PPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKH 263 (467)
T ss_pred CcccCcceEEEeccCCC---------------------CCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence 98877764333332221 11122233 248899999999999999999887764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=144.81 Aligned_cols=221 Identities=19% Similarity=0.255 Sum_probs=150.6
Q ss_pred EcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee---cCCEEEEeeCCCcEEEEECCCC-------ceeEEecC
Q 009274 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT---SGRYLYTGSGDRTIKAWSLLDG-------TLSCTMSG 380 (538)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~ 380 (538)
++.-|.|-||+++.+.....-...... ....+..+.+ |...|+++++||.|++|.+..+ .+...+..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~---Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLF---NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccc---cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence 355689999999866543221111101 1122444544 4569999999999999998653 45667889
Q ss_pred CCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcce
Q 009274 381 HKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM 457 (538)
Q Consensus 381 h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 457 (538)
|...|+++.|+ .+.|++++.|-+|++||+++++....+.+|.. .+.. ++|+|+|+.+++.+.||+|++|+.++..
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~-~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFG-IAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeE-EEECCCCcceeeeecCceEEEeCCCCCC
Confidence 99999999999 67999999999999999999999989988754 4444 7999999999999999999999966544
Q ss_pred eeeccccceE----EEEEe--CCCEEEEEeCCC----eEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEE
Q 009274 458 KSMQTHKGSV----FAVFL--EGKWLFTGGWDK----TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGC 526 (538)
Q Consensus 458 ~~~~~h~~~v----~~~~~--~~~~l~sgs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~ 526 (538)
+.+..-.+++ ..+.| +|+++++.+.|. .|.+||..+-.........-.......+-....+.+. +++|-
T Consensus 754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecC
Confidence 4333222222 23334 999998888764 5888988754422221111111111112211222333 66788
Q ss_pred CCCeEEEEEc
Q 009274 527 ADRTVKVYYY 536 (538)
Q Consensus 527 ~dg~v~vw~~ 536 (538)
.|..|.+|++
T Consensus 834 GD~~v~~yEv 843 (1012)
T KOG1445|consen 834 GDRFVNMYEV 843 (1012)
T ss_pred CCceEEEEEe
Confidence 9999999986
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=138.74 Aligned_cols=264 Identities=19% Similarity=0.256 Sum_probs=177.0
Q ss_pred cEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 009274 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 254 ~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
.|..++|. |..++.+. +..+.+||.++|..++++++|.+.|++++|+.++ ..+++|+.|..|.+|+-.-.. .+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG---~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEG---IL 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccc---ee
Confidence 78899998 77777765 4479999999999999999999999999998855 577999999999999854221 11
Q ss_pred eeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEEC
Q 009274 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSL 409 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~ 409 (538)
+- .......++.|.|-...+++++- ...-+|........ ..+ ....+.+.+|. +.+++.|-.||+|.+-+.
T Consensus 89 kY----SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 89 KY----SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred ee----ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 11 11133445667776778998876 45678876543322 211 24567778887 559999999999999875
Q ss_pred CCCceeEEEe--cCCCCceEEEEEEcCCC-----CEEEEEeCCCcEEEEeCC-cceeeeccccceEEEEE--eCCCEEEE
Q 009274 410 SDHSLLTVLE--EDSSGAVSSVLSLTAVQ-----HTLVVSHESGSIKVWRND-KFMKSMQTHKGSVFAVF--LEGKWLFT 479 (538)
Q Consensus 410 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~iwd~~-~~~~~~~~h~~~v~~~~--~~~~~l~s 479 (538)
. ++....+. +.....+.+ ++|+|+. ..+++.....++.+|.+. +.+..-+.-.-.-.|++ ++|.++..
T Consensus 162 ~-gEek~~I~Rpgg~Nspiws-i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 162 N-GEEKVKIERPGGSNSPIWS-ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred C-CCcceEEeCCCCCCCCceE-EEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 4 44333333 223344444 5777753 467777777788877743 32221111111223444 49999999
Q ss_pred EeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEc
Q 009274 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 480 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~ 536 (538)
||.|+.+++|.-++-.+-. .+. ....+.+....|+++ ++.|+.||+|--|++
T Consensus 240 GGsdk~L~~fTR~GvrLGT----vg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDGVRLGT----VGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCCceEEEeecCeEEee----ccc-cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999999766543322 222 122334444556766 666999999988775
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-16 Score=152.15 Aligned_cols=226 Identities=20% Similarity=0.288 Sum_probs=172.7
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 290 (538)
|-++.+...+..+++++.+..+++|. ..||.+.|+.++.+ +-+++++|.|..|++|.+.++.++..+.+
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg 272 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG 272 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence 67888889999999999999999998 46999999999998 77889999999999999999999999999
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc-----------eee---------ecc-----cCCceeeeE
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP-----------LKK---------WNE-----EKDWRYSGI 345 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------~~~---------~~~-----~~~~~~~~~ 345 (538)
|++.|++++|+|- .+.+.||++++||.+-...... +.. +.. ....+...+
T Consensus 273 htgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~ 347 (1113)
T KOG0644|consen 273 HTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ 347 (1113)
T ss_pred cccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhH
Confidence 9999999999984 4788999999999872100000 000 000 000000001
Q ss_pred EEEeec-----------CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCC
Q 009274 346 HALTTS-----------GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSD 411 (538)
Q Consensus 346 ~~~~~~-----------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~ 411 (538)
.++..+ ..+.+++-.+..+++|++.+|...+.+.+|...+..+.++ .....+++.||...|||+-.
T Consensus 348 l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 348 LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 111111 1244444556678899999999999999999999999998 34778999999999999999
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 009274 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 454 (538)
|.+++.....+. .... ..|+++|..++....-|.++|...+
T Consensus 428 g~pik~y~~gh~-kl~d-~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 428 GIPIKHYFIGHG-KLVD-GKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred CCcceeeecccc-eeec-cccCCCCceEecCCCCCceEEeccC
Confidence 988877765533 3333 4899999999998888999998644
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-16 Score=151.55 Aligned_cols=129 Identities=21% Similarity=0.329 Sum_probs=89.2
Q ss_pred eeeeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 9 VTKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
+|+++-|+= |+|..+..+.+.+..-+.+||+.|||||.+..-..+ .+.+...-+++.+|||||||||||+|+.|
T Consensus 493 lVkG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~----~~~~~~k~Ki~r~SDvWSLGCILYqMvYg 568 (677)
T KOG0596|consen 493 LVKGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSS----RENGKSKIKISRKSDVWSLGCILYQMVYG 568 (677)
T ss_pred EEeeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhcccc----ccCCCcceeecCccchhhhhhHHHHHHhc
Confidence 578888988 999999999877766689999999999998554333 12233455688999999999999999999
Q ss_pred C-ccchhh-hh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 87 E-QFTKEL-ID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 87 ~-pf~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
+ ||...- .. .+..+-..++. | - .|+.+.. -++.++...||+.+|.+||+..++.+
T Consensus 569 ktPf~~~~n~~aKl~aI~~P~~~--I--e---------fp~~~~~------~~li~~mK~CL~rdPkkR~si~eLLq 626 (677)
T KOG0596|consen 569 KTPFGQIINQIAKLHAITDPNHE--I--E---------FPDIPEN------DELIDVMKCCLARDPKKRWSIPELLQ 626 (677)
T ss_pred CCchHHHHHHHHHHHhhcCCCcc--c--c---------ccCCCCc------hHHHHHHHHHHhcCcccCCCcHHHhc
Confidence 9 997642 11 11111111110 0 0 1111111 01667888899999999999887655
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-14 Score=145.74 Aligned_cols=260 Identities=13% Similarity=0.165 Sum_probs=174.4
Q ss_pred EeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC-cceeeec-ccCCceeeeEEEEeecCCE
Q 009274 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH-EPLKKWN-EEKDWRYSGIHALTTSGRY 354 (538)
Q Consensus 277 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 354 (538)
|+. .|..+..+..|+..|..++.++....+|++|+.||+|++||...-... ...+... -...........+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 443 477888888999999999999988899999999999999998754332 1111110 0101122234566678889
Q ss_pred EEEeeCCCcEEEEECCCCc-------eeEEecCC-CCCeEEE-EEe---CC-EEEEEecCCcEEEEECCCCceeEEEecC
Q 009274 355 LYTGSGDRTIKAWSLLDGT-------LSCTMSGH-KSAVSTL-AVC---NG-VLYSGSRDGTIRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 355 l~sg~~dg~i~iwd~~~~~-------~~~~~~~h-~~~v~~l-~~~---~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 421 (538)
+|+++.||.|++.++...+ .......+ .+.+.++ ++. .. .++.+..-+.|..||++......+++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987521 11122222 2333333 343 33 7788888899999999998877777665
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeecc-ccceEEEE--Ee---CCCEEEEEeC--CCeEEEEec
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQT-HKGSVFAV--FL---EGKWLFTGGW--DKTVSVQEL 491 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~-h~~~v~~~--~~---~~~~l~sgs~--dg~v~iwd~ 491 (538)
......+.++.+|.+++++.|+..|.+.+||++ .++..+.. +..++..+ ++ .....++++. .+.|.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 544455557999999999999999999999965 45555532 44566554 33 2355555554 678999999
Q ss_pred CCCeeEeeeecCCc-------ccC---------CCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 492 AGDEFEEDVIPTGA-------IPC---------GSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 492 ~~~~~~~~~~~~~~-------~~~---------~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.++.....+..... .+. .....++.-.++.+++|+.|+.|+.||..
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 98865444332200 011 11222333346778999999999999974
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-15 Score=139.34 Aligned_cols=234 Identities=15% Similarity=0.205 Sum_probs=155.2
Q ss_pred eeeeccCcceeEEeecCCeEE-----------------EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC---
Q 009274 224 QARAAGGVKDLVNGLSKGNVK-----------------FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD--- 281 (538)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~-----------------i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~--- 281 (538)
...+.+....++++..++.+. +++|.+|.++|.|+++. +.++++|+.||+|+.|++..
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence 344455566677777666644 56678999999999998 99999999999999996531
Q ss_pred -------CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEe-ecCC
Q 009274 282 -------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT-TSGR 353 (538)
Q Consensus 282 -------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 353 (538)
......+.||.+.|+.+++++... .|++++.||++++|+...... ..+.......+...+.+. ....
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP----CTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred cccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc----cccCCccccCCcceEeeccchhH
Confidence 133467789999999999988544 579999999999999865433 111111111111111111 1112
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEecCC-------CCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 009274 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGH-------KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424 (538)
Q Consensus 354 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 424 (538)
..++...-+.-.+++......+..+... ...+.-+.++ .++.+++..|+.|+++|..+++++.....+..
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~- 532 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD- 532 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc-
Confidence 2332222233333344443333333211 1345556666 45999999999999999999999988877643
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeecccc
Q 009274 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHK 464 (538)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~ 464 (538)
. .+.+++.|+|.+|++++.|+.+++|... .++.....|.
T Consensus 533 s-vtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 533 S-VTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred e-ecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 2 3347999999999999999999999854 3444444443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-13 Score=129.58 Aligned_cols=265 Identities=14% Similarity=0.163 Sum_probs=158.7
Q ss_pred EEEEeCCCcEEEEeCCC-Cc--eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCce
Q 009274 265 LFSSSFDKSIHVWSLKD-FS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (538)
Q Consensus 265 l~s~s~dg~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (538)
+++...|+.|++||+.+ ++ .+..++ +.+....++++|+++.+++++..++.|.+|+++............... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~--~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG--S 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC--C
Confidence 34447799999999964 33 445554 345677889999776666666678999999997322111122111111 1
Q ss_pred eeeEEEEeecCCEEEEeeC-CCcEEEEECCC-C---ceeEEecCCCCCeEEEEEe--CCEEE-EEecCCcEEEEECCCCc
Q 009274 342 YSGIHALTTSGRYLYTGSG-DRTIKAWSLLD-G---TLSCTMSGHKSAVSTLAVC--NGVLY-SGSRDGTIRLWSLSDHS 413 (538)
Q Consensus 342 ~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~-~---~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~ 413 (538)
..-+.++++++++++++. ++.|.+||+.+ + +.+..+. +.....+++++ +++++ +...++.|.+||+.+..
T Consensus 82 -p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 -PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred -ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 124678899998887764 88999999964 2 2233333 22345677788 34664 55567999999997643
Q ss_pred eeE-----EEecCCCCceEEEEEEcCCCCEEEEEeC-CCcEEEEeCCc------ceeeecccc------ceE--EEEEeC
Q 009274 414 LLT-----VLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDK------FMKSMQTHK------GSV--FAVFLE 473 (538)
Q Consensus 414 ~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~------~~~~~~~h~------~~v--~~~~~~ 473 (538)
.+. ......... ...+.++|++++++++.. ++.|.+||... ..+.+..+. ... ..++++
T Consensus 160 ~l~~~~~~~~~~~~g~~-p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAG-PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecCCCCC-CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 111111111 223689999999988876 89999999642 122222211 111 234569
Q ss_pred CCEEEEEeC-CCeEEEEecCCCee-EeeeecCCcccCCCceEEEEEeCC-EEEEEE-CCCeEEEEEcC
Q 009274 474 GKWLFTGGW-DKTVSVQELAGDEF-EEDVIPTGAIPCGSVITALLYWQG-KLFVGC-ADRTVKVYYYG 537 (538)
Q Consensus 474 ~~~l~sgs~-dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~vw~~~ 537 (538)
+++++++.. ++.|.+|++..... ......... ...+....+.+++ +|+++. .+++|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999988864 78999999964321 111111110 0112223344555 466655 48999999874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-13 Score=136.11 Aligned_cols=312 Identities=14% Similarity=0.178 Sum_probs=205.2
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEE-------------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKD-------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~-------------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
+.+...++.+..++++..+|.+.+|. +.-|.+.|++++|+ |.+|+||+..|.+.+|.+++++ .+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence 56788889999999999999999986 44588999999999 9999999999999999999988 55
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeeccc------CCceeeeEEEEeecCCEEEEeeC
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE------KDWRYSGIHALTTSGRYLYTGSG 360 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~sg~~ 360 (538)
-++.-.++|..+.++|++. +.+....|..|.+....+......+...... .........++.|..+.++-.+.
T Consensus 287 fLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred cccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 5666788999999998666 4466677999999887554433333333222 11123345677776778888889
Q ss_pred CCcEEEEECCCCceeEEec-----CCCC------CeEEEEEe--CCEEEEEe--------cC--CcEEEEECCCCc----
Q 009274 361 DRTIKAWSLLDGTLSCTMS-----GHKS------AVSTLAVC--NGVLYSGS--------RD--GTIRLWSLSDHS---- 413 (538)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~-----~h~~------~v~~l~~~--~~~l~s~s--------~d--g~i~iwd~~~~~---- 413 (538)
.|.|.+||+.+.+.+..+. .+.+ .++.++.+ ++++++.- .| -.+++|-.....
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~ 445 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI 445 (792)
T ss_pred CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence 9999999998877665542 1222 34555544 55666653 23 357888665433
Q ss_pred eeEEEecCCCCceEEEEEEcCCC-CEEEEEeCCCcEEEEeC------Cc------ceeeeccccceEEEEEe--CCCEEE
Q 009274 414 LLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWRN------DK------FMKSMQTHKGSVFAVFL--EGKWLF 478 (538)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~------~~------~~~~~~~h~~~v~~~~~--~~~~l~ 478 (538)
+...+..+|.......+..++.. ...++++.||.+++|-. .+ +...-..|..++.+.+| || .++
T Consensus 446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG-sll 524 (792)
T KOG1963|consen 446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG-SLL 524 (792)
T ss_pred EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC-cEE
Confidence 34444445544444433444443 38999999999999953 11 11222237788888888 55 666
Q ss_pred EEeCCCeEEEEecCCC-eeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 479 TGGWDKTVSVQELAGD-EFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 479 sgs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
+.+.|++|.+||..+. .+... ......+........-......+.....+.+.+|++.
T Consensus 525 a~s~~~~Itiwd~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll 583 (792)
T KOG1963|consen 525 AVSFDDTITIWDYDTKNELLCT-EGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLL 583 (792)
T ss_pred EEecCCEEEEecCCChhhhhcc-ccccccchHhHhhhcccccccceeeccCceEehHhhh
Confidence 7778899999999883 32211 1111111222222222222233444556677888763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.7e-14 Score=138.69 Aligned_cols=240 Identities=17% Similarity=0.187 Sum_probs=165.8
Q ss_pred CCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCce--EEEE----ecCCcCeEEEEEecCCC-CEEEEEcCCCcEEEEE
Q 009274 252 RDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH--VHTF----KGHDHKVMAVVYVDEDQ-PLCISGDSGGGIFVWS 321 (538)
Q Consensus 252 ~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~--~~~~----~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd 321 (538)
..+|+|++|+ ..+++.|..+|.|.+||+..+.. ...+ ..|..++..+.|..+.. .-+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4789999998 89999999999999999986654 2222 35889999999985322 3468888899999998
Q ss_pred ccCCCCCcceeeeccc-------CCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCC--------ceeEEecCCCCCe
Q 009274 322 FSFPLGHEPLKKWNEE-------KDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDG--------TLSCTMSGHKSAV 385 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~--------~~~~~~~~h~~~v 385 (538)
++.-............ ..........|.+ +.+.+++|+.+|.|..-+-... +....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7753321111111100 1112222334444 5669999999999987443221 1233556788999
Q ss_pred EEEEEe---CCEEEEEecCCcEEEEECC-CCceeEEEecCCCCceEEEEEEcCCC-CEEEEEeCCCcEEEEeCC----cc
Q 009274 386 STLAVC---NGVLYSGSRDGTIRLWSLS-DHSLLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWRND----KF 456 (538)
Q Consensus 386 ~~l~~~---~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~----~~ 456 (538)
+++.++ ...+++++ |.++++|.-. ...++..+..+. ..+.. ++|||.. ..++++..||.+.+||+. .+
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~-~~v~~-vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP-DYVTD-VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc-ceeee-eEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999988 44555555 9999999987 555665555432 22333 6899865 577788889999999954 35
Q ss_pred eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC
Q 009274 457 MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 457 ~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
..+...+......+.+ +|+.|+.|...|++++|++...
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5555555444455555 6999999999999999999643
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-16 Score=146.33 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=79.9
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
.-|+. |+|+... ++.+|.++||||.|.|||++ ++-. ...++.+.|+|||||+||-+|+|. ||
T Consensus 317 llKItDFGlAK~~g---~~sfm~TlCGTpsYvAPEVl------~~kg------~~~~~~kVDiWSlGcvLfvcLsG~pPF 381 (475)
T KOG0615|consen 317 LLKITDFGLAKVSG---EGSFMKTLCGTPSYVAPEVL------ASKG------VEYYPSKVDIWSLGCVLFVCLSGYPPF 381 (475)
T ss_pred EEEecccchhhccc---cceehhhhcCCccccChhhe------ecCC------eecccchheeeeccceEEEEeccCCCc
Confidence 34666 7777776 34578999999999999999 3311 122234789999999999999999 99
Q ss_pred chhhhhh-eeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDY-IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
....... +.-+..+.. +..-++.|.+ +++. ..+++.++|..+|+.||++.+..+
T Consensus 382 S~~~~~~sl~eQI~~G~-----y~f~p~~w~~-Isee-----------a~dlI~~mL~VdP~~R~s~~eaL~ 436 (475)
T KOG0615|consen 382 SEEYTDPSLKEQILKGR-----YAFGPLQWDR-ISEE-----------ALDLINWMLVVDPENRPSADEALN 436 (475)
T ss_pred ccccCCccHHHHHhcCc-----ccccChhhhh-hhHH-----------HHHHHHHhhEeCcccCcCHHHHhc
Confidence 9864442 221111111 2333444443 4443 456999999999999999887665
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-16 Score=152.25 Aligned_cols=109 Identities=18% Similarity=0.343 Sum_probs=78.4
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~ 90 (538)
-||| |||-+++..+.- -.++||||.|+|||++. +...+..+||||+||+||.||+|+ ||+
T Consensus 157 VKIgDFGLAt~le~~~Er--k~TlCGTPNYIAPEVl~---------------k~gHsfEvDiWSlGcvmYtLL~G~PPFe 219 (592)
T KOG0575|consen 157 VKIGDFGLATQLEYDGER--KKTLCGTPNYIAPEVLN---------------KSGHSFEVDIWSLGCVMYTLLVGRPPFE 219 (592)
T ss_pred EEecccceeeeecCcccc--cceecCCCcccChhHhc---------------cCCCCCchhhhhhhhHHHhhhhCCCCcc
Confidence 5899 899888855332 44799999999999992 234567899999999999999999 999
Q ss_pred hhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 91 KELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
..+.+.+. +++.. ...+|.. -..+.+++|.++|..+|..||++.++.+.
T Consensus 220 tk~vkety~~Ik~~-------~Y~~P~~---------------ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h 269 (592)
T KOG0575|consen 220 TKTVKETYNKIKLN-------EYSMPSH---------------LSAEAKDLIRKLLRPNPSERPSLDEVLDH 269 (592)
T ss_pred cchHHHHHHHHHhc-------Ccccccc---------------cCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 87555333 11100 0000110 11236789999999999999999887763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=139.41 Aligned_cols=241 Identities=18% Similarity=0.244 Sum_probs=154.7
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCC-
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLD- 371 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~- 371 (538)
+-..+.|+|-. ..+++++..-.|++||.+.+.....+........ ......-+.- |...+++|+.||.|+||+-..
T Consensus 1066 ~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t-~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDT-RVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCCCCCC-ccceeeeecccchhheeeeccCceEEEeccccc
Confidence 34566676643 4567787788999999987655333322221111 1122222222 334899999999999997532
Q ss_pred ----CceeEEecC-------CCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 009274 372 ----GTLSCTMSG-------HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 372 ----~~~~~~~~~-------h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
.+.+..+.+ ..+.=.-+.|. .++|++++.-..|+|||......+..+.......++...+-...|+.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 233333322 11111334555 66888888889999999998888887776544444433333455899
Q ss_pred EEEEeCCCcEEEEeCC-----cceeeeccccce--EEEEEe--CCC-EEEEEeCCCeEEEEecCCCeeEeeeecCCcccC
Q 009274 439 LVVSHESGSIKVWRND-----KFMKSMQTHKGS--VFAVFL--EGK-WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508 (538)
Q Consensus 439 l~~~~~dg~i~iwd~~-----~~~~~~~~h~~~--v~~~~~--~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~ 508 (538)
+++|..||.|++||.+ ..+..++.|+.. |..+++ .|- .|++|+.||.|++||++.............-.-
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999954 367778889887 888877 333 599999999999999998532222221111112
Q ss_pred CCceEEEEEe-CCE-EEEEECCCeEEEEEcC
Q 009274 509 GSVITALLYW-QGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 509 ~~~~~~~~~~-~~~-l~sg~~dg~v~vw~~~ 537 (538)
++..+++..+ ... +++|+. +.|+||++.
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 3346666665 333 555666 999999974
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-16 Score=142.26 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=70.6
Q ss_pred cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhh
Q 009274 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (538)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~ 96 (538)
||++.-...+.+ .+++|||+.|||||++ .+ ..|+..+|.||||++|||||+|. ||.+.+...
T Consensus 170 gL~k~~~~~~~~--t~tfcGT~eYmAPEil------~~---------~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~ 232 (357)
T KOG0598|consen 170 GLCKEDLKDGDA--TRTFCGTPEYMAPEIL------LG---------KGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK 232 (357)
T ss_pred ccchhcccCCCc--cccccCCccccChHHH------hc---------CCCCcccchHhHHHHHHHHhhCCCCCcCccHHH
Confidence 788765555443 6789999999999999 43 67889999999999999999999 999987663
Q ss_pred eeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
+.....+.. ...++ .....+..+++.+.|.++|.+|-.
T Consensus 233 ~~~~I~~~k-----~~~~p---------------~~ls~~ardll~~LL~rdp~~RLg 270 (357)
T KOG0598|consen 233 MYDKILKGK-----LPLPP---------------GYLSEEARDLLKKLLKRDPRQRLG 270 (357)
T ss_pred HHHHHhcCc-----CCCCC---------------ccCCHHHHHHHHHHhccCHHHhcC
Confidence 331000000 00000 112223667999999999999963
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-12 Score=116.60 Aligned_cols=232 Identities=16% Similarity=0.165 Sum_probs=159.1
Q ss_pred cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC--cEEEEECC
Q 009274 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR--TIKAWSLL 370 (538)
Q Consensus 293 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~i~iwd~~ 370 (538)
..+....|.. +..++..|+.||. ++++.+.-.. ..+.......++..-.+..+++..+.+. .+++++.+
T Consensus 6 ~ti~~~~~Nq-d~~~lsvGs~~Gy-k~~~~~~~~k-------~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 6 PTINFIGFNQ-DSTLLSVGSKDGY-KIFSCSPFEK-------CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred cceeeeeecc-ceeEEEccCCCce-eEEecCchHH-------hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcc
Confidence 3455555643 4556667777664 5666543221 1111112233555666677777666654 49999998
Q ss_pred CCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC--CCCEEEEEe--CCC
Q 009274 371 DGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--VQHTLVVSH--ESG 446 (538)
Q Consensus 371 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~dg 446 (538)
.+..+..+. ...+|.++.++.+.|+++-.+. |+|||+++.+.++++....+.. ...+++++ .+.+++--+ ..|
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~-~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP-KGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred cCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCc-cceEeeccCCCCceEEecCCCCCc
Confidence 888777775 5678999999977777776655 9999999999999987652222 22245555 445777533 468
Q ss_pred cEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCe-EEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE
Q 009274 447 SIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKT-VSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK 521 (538)
Q Consensus 447 ~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (538)
.|.+||..+ ....+..|.+++.+++| +|.+|||+|+.|+ ||||.+.+++....+..... ........|.+++.
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQ 231 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCC
Confidence 999999654 67788999999999987 9999999999997 69999998887655543221 23344445556666
Q ss_pred -EEEEECCCeEEEEEcCC
Q 009274 522 -LFVGCADRTVKVYYYGK 538 (538)
Q Consensus 522 -l~sg~~dg~v~vw~~~~ 538 (538)
|.+.+..++|++|++++
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 45577889999999864
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-15 Score=139.70 Aligned_cols=114 Identities=21% Similarity=0.359 Sum_probs=80.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+=-|+. |+|+++-+- ...+++||..|||||.+ .| ..|+.++||||||.+++||.+|+ |
T Consensus 216 GeVKicDFGVS~~lvnS----~a~tfvGT~~YMsPERi------~g---------~~Ys~~sDIWSLGLsllE~a~GrfP 276 (364)
T KOG0581|consen 216 GEVKICDFGVSGILVNS----IANTFVGTSAYMSPERI------SG---------ESYSVKSDIWSLGLSLLELAIGRFP 276 (364)
T ss_pred CCEEeccccccHHhhhh----hcccccccccccChhhh------cC---------CcCCcccceecccHHHHHHhhCCCC
Confidence 344666 777666543 24579999999999999 66 68889999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCc-c-chHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSE-F-VSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....+.. ..+..+...+...+.+..+.. + +++...+..||.++|..||++.++..
T Consensus 277 ~~~~~~~~----------------~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~ 334 (364)
T KOG0581|consen 277 YPPPNPPY----------------LDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQ 334 (364)
T ss_pred CCCcCCCC----------------CCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 98752210 011111122222223333332 3 45889999999999999999888765
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-16 Score=143.76 Aligned_cols=117 Identities=14% Similarity=0.220 Sum_probs=75.7
Q ss_pred eeeeeec--cccccccc-cchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 11 KSVAKVG--CVGSRICD-KEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
++.+|++ |++++... .........+.|||.|||||++ ++ .....+++|||||||+++||+||.
T Consensus 154 ~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi------~~--------g~~~~~~sDiWSlGCtVvEM~Tg~ 219 (313)
T KOG0198|consen 154 NGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVI------RN--------GEVARRESDIWSLGCTVVEMLTGK 219 (313)
T ss_pred CCeEEeccCccccccccccccccccccccCCccccCchhh------cC--------CCcCCccchhhhcCCEEEeccCCC
Confidence 5799999 66666663 1222224469999999999999 31 022336999999999999999999
Q ss_pred -ccchh-hhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 -QFTKE-LID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 -pf~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||... ... .+.. +... ...|.+|. .-.....+.+.+|+.++|.+||++.++++.
T Consensus 220 ~PW~~~~~~~~~~~~-----------ig~~-----~~~P~ip~----~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~h 276 (313)
T KOG0198|consen 220 PPWSEFFEEAEALLL-----------IGRE-----DSLPEIPD----SLSDEAKDFLRKCFKRDPEKRPTAEELLEH 276 (313)
T ss_pred CcchhhcchHHHHHH-----------Hhcc-----CCCCCCCc----ccCHHHHHHHHHHhhcCcccCcCHHHHhhC
Confidence 98862 111 0110 0000 00111110 011136789999999999999999988774
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-11 Score=122.31 Aligned_cols=279 Identities=12% Similarity=0.096 Sum_probs=178.8
Q ss_pred CeEEEEEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 241 GNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 241 ~~~~i~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
....+|..+-...........++.++.++.|+.+..+|.++|+.+............... .+..++.++.+|.++.|
T Consensus 84 tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~a~ 160 (377)
T TIGR03300 84 TGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV---ANGLVVVRTNDGRLTAL 160 (377)
T ss_pred CCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE---ECCEEEEECCCCeEEEE
Confidence 334567665444433445556888999999999999999999998876543321111222 12356667789999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-----------CeEEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-----------AVSTLA 389 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~ 389 (538)
|.++++................ .. .....+..++.+..+|.+..+|.++|+.++....... ...+..
T Consensus 161 d~~tG~~~W~~~~~~~~~~~~~-~~-sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 161 DAATGERLWTYSRVTPALTLRG-SA-SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV 238 (377)
T ss_pred EcCCCceeeEEccCCCceeecC-CC-CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE
Confidence 9988765433322111000000 00 0111235778888899999999999988776432110 011233
Q ss_pred EeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccc-cce
Q 009274 390 VCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTH-KGS 466 (538)
Q Consensus 390 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h-~~~ 466 (538)
+.++.++.++.+|.++.||..+++.+....... . ......+..+++++.||.++.+|..+ .+...... ...
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~----~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~ 312 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--Y----QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ 312 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--c----cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc
Confidence 447889999999999999999998877665221 1 11223467888888999999999543 33332111 112
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEE
Q 009274 467 VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVY 534 (538)
Q Consensus 467 v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw 534 (538)
..+....+..+++++.+|.++++|..+++......... ..........++.|+.++.||.|+.|
T Consensus 313 ~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~----~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 LTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG----SGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred cccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC----CccccCCEEECCEEEEEeCCceEEEe
Confidence 22223367899999999999999999998876655332 11223334557889999999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=119.57 Aligned_cols=188 Identities=12% Similarity=0.198 Sum_probs=138.6
Q ss_pred cCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCce---EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 250 GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH---VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 250 ~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
.|..++++..|+ .+++.++|-|-+..|||++++.. ...+-.|..+|..++|...+..+|++.+.||.++++|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 467899999998 89999999999999999998633 566778999999999999888999999999999999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeec---CCEEEEeeCC-CcEEEEECCC-CceeEEecCCCCCeEEEEEe---CCEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGD-RTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC---NGVL 395 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~d-g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~---~~~l 395 (538)
...-...+..-... ......++++ .+++++-..| ..|.+.|++. ..++..+++|.+.|+.++|. ...+
T Consensus 228 ~leHSTIIYE~p~~----~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSP----STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred ccccceEEecCCCC----CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCcee
Confidence 65433222221111 1223444443 4477765544 5799999986 45788999999999999998 4599
Q ss_pred EEEecCCcEEEEECCCCce------eEEEecCCCCceEEEEEEcC-CCCEEEEEeC
Q 009274 396 YSGSRDGTIRLWSLSDHSL------LTVLEEDSSGAVSSVLSLTA-VQHTLVVSHE 444 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 444 (538)
++|+.|..+.+||+.+.-. +..... .+.+.. +.|++ .+..++.+..
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNq-i~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQ-IQWSSSQPDWIAICFG 356 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhhhc--cceeee-eeecccCCCEEEEEec
Confidence 9999999999999975322 111111 222333 56664 4567766654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-13 Score=120.28 Aligned_cols=268 Identities=10% Similarity=0.057 Sum_probs=188.9
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEee----------------cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQ----------------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD 281 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~----------------~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~ 281 (538)
..++...++.+++.++++..+...++|.+. .|...|.|++|+ +..+++|..+++|.+.|+++
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 347788899999999999999999999842 367899999999 78899999999999999999
Q ss_pred CceEEEEec--CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC-cceeeecccCCceeeeEEEEeec-CCEEEE
Q 009274 282 FSHVHTFKG--HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH-EPLKKWNEEKDWRYSGIHALTTS-GRYLYT 357 (538)
Q Consensus 282 ~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s 357 (538)
.+.+..+.. ..+.|+.+..+|. .+.+++.+.++.|.+||.+..... ..+...+....++ ...|.|. ..+|++
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~---t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY---TAEFHPETPALILV 212 (609)
T ss_pred ceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccce---eeeecCCCceeEEe
Confidence 988877653 2358999999997 557799999999999999865532 2222222222221 2345553 558999
Q ss_pred eeCCCcEEEEECCCCc-eeEEe---cCCCC---CeEEEEEe--CCEEEEEecCCcEEEEECCCCcee-EEEecCCCCce-
Q 009274 358 GSGDRTIKAWSLLDGT-LSCTM---SGHKS---AVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL-TVLEEDSSGAV- 426 (538)
Q Consensus 358 g~~dg~i~iwd~~~~~-~~~~~---~~h~~---~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~- 426 (538)
.+..+-+.+||.+... ++... .+-.. .-.++.|+ ++.+++--....-.+||+-+..+. .++.....+..
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N 292 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCN 292 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCccee
Confidence 9999999999987543 22211 11111 22566777 556666666666678888775543 23322211211
Q ss_pred ---EEEEEEcCCCCEEEEEeCCCcEEEEeCC-------------------------cceeeeccccceEEEEEe--CCCE
Q 009274 427 ---SSVLSLTAVQHTLVVSHESGSIKVWRND-------------------------KFMKSMQTHKGSVFAVFL--EGKW 476 (538)
Q Consensus 427 ---~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------------------------~~~~~~~~h~~~v~~~~~--~~~~ 476 (538)
...++|-. ...+++|+.+-.|++|.+. +....+++|.+-+..+.| ...+
T Consensus 293 ~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 293 IKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred eeeeeeeeeec-ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence 11234443 3459999999999999632 124567889998888887 6678
Q ss_pred EEEEeCCCeEEEEecC
Q 009274 477 LFTGGWDKTVSVQELA 492 (538)
Q Consensus 477 l~sgs~dg~v~iwd~~ 492 (538)
|++.+-.+.+++|...
T Consensus 372 l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 372 LVSSGVENSFKLWSDH 387 (609)
T ss_pred Eeccchhhheeccccc
Confidence 8899999999999754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=133.25 Aligned_cols=231 Identities=13% Similarity=0.140 Sum_probs=157.8
Q ss_pred cCCEEEE--EeCCCcEEEEeCCC-CceE----EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceee
Q 009274 261 GGGFLFS--SSFDKSIHVWSLKD-FSHV----HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (538)
Q Consensus 261 ~~~~l~s--~s~dg~i~iwd~~~-~~~~----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (538)
+..+++. ++.-|.|-||++.. |+.. -.+. ....|+++.|.|-+...++.++.||.|++|.+..+........
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 3444443 35578999999864 3221 1121 4567999999998888899999999999999987654333222
Q ss_pred ----ecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEE
Q 009274 334 ----WNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRL 406 (538)
Q Consensus 334 ----~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~i 406 (538)
...+.. ......|+| ..+.|++++.|.+|++||+++++....+.+|.+.|.+++|+ +..+++.+.||+|++
T Consensus 669 Pe~~lt~h~e--KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 669 PEKILTIHGE--KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred cceeeecccc--eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 222221 112234444 35689999999999999999999999999999999999999 669999999999999
Q ss_pred EECCCCce-eEEEecCCCCceEEEEEEcCCCCEEEEEeCC----CcEEEEeCCcc----eeee--ccccc-eEEEEEeC-
Q 009274 407 WSLSDHSL-LTVLEEDSSGAVSSVLSLTAVQHTLVVSHES----GSIKVWRNDKF----MKSM--QTHKG-SVFAVFLE- 473 (538)
Q Consensus 407 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~~~--~~h~~-~v~~~~~~- 473 (538)
|+.++++. ++.-.+.. +.....+.|.-+|+++++.+.| +.|.+||..+. +.+. ....+ -|-...+|
T Consensus 747 y~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPV-GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred eCCCCCCCccccCCCCc-cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 99988754 33333332 2233335778889998887765 56788874432 2211 11111 11122233
Q ss_pred CCEEEEEeCCCeEEEEecCCCe
Q 009274 474 GKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 474 ~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+-++++|-.|..|++|.+-...
T Consensus 826 ~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCC
Confidence 4577888889999999986543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=131.36 Aligned_cols=163 Identities=23% Similarity=0.393 Sum_probs=121.7
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCcCeEEEEEecC-CCCEEEEEcCCCcEEEEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd 321 (538)
..|.||++.|+|++|+ |.+|++||.|-.+.|||.-..+.++.+. +|...|.++.|.|. ++.++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4589999999999999 9999999999999999999888887764 79999999999985 556788999999999999
Q ss_pred ccCCCCC-------cceeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCce-e------E---EecCCCC
Q 009274 322 FSFPLGH-------EPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTL-S------C---TMSGHKS 383 (538)
Q Consensus 322 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~-~------~---~~~~h~~ 383 (538)
+...+.. .+...+..+.. .. .-.+..|++ +.+.+++.||+|+-+|++.... . . .+....-
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~-rV-Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTD-RV-KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred cccccccccccCccchhhhhhhhhh-hh-hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9853322 12222222211 01 112445555 6999999999999999986321 1 1 1111223
Q ss_pred CeEEEEEe---CCEEEEEecCCcEEEEECC
Q 009274 384 AVSTLAVC---NGVLYSGSRDGTIRLWSLS 410 (538)
Q Consensus 384 ~v~~l~~~---~~~l~s~s~dg~i~iwd~~ 410 (538)
...|+..+ +.+|++|+.|--.++||.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 45677887 5599999999999999954
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-15 Score=132.30 Aligned_cols=118 Identities=16% Similarity=0.080 Sum_probs=73.4
Q ss_pred eeeeccccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccch
Q 009274 13 VAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (538)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~ 91 (538)
..|+-|+++..... ...||+.|||||++ .+ ..+++++|||||||+||||+||+ ||..
T Consensus 49 ~~~~fG~~~~~~~~-------~~~g~~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltg~~p~~~ 106 (176)
T smart00750 49 LLKLDGSVAFKTPE-------QSRVDPYFMAPEVI------QG---------QSYTEKADIYSLGITLYEALDYELPYNE 106 (176)
T ss_pred ceeeccceEeeccc-------cCCCcccccChHHh------cC---------CCCcchhhHHHHHHHHHHHHhCCCCccc
Confidence 45556666655432 23799999999999 44 56789999999999999999999 9975
Q ss_pred hhhh-hee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 92 ELID-YIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 92 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
.... ... .+. . . ........+........ ...+.+++.+||..+|.+||++.++.......
T Consensus 107 ~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~~~~~~------~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~ 169 (176)
T smart00750 107 ERELSAILEILL-N-G-----MPADDPRDRSNLESVSA------ARSFADFMRVCASRLPQRREAANHYLAHCRAL 169 (176)
T ss_pred cchhcHHHHHHH-H-H-----hccCCccccccHHHHHh------hhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence 4221 000 000 0 0 00000000000000000 01378899999999999999999887765443
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-15 Score=139.07 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=60.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
-+.||+ |+||-+.+... ..++||||-|||||++ ...+|+.|+|+||+|++||+|++|+ |
T Consensus 152 ~~LKIADFGfAR~L~~~~~---a~tlcGSplYMAPEV~---------------~~~~YdAKADLWSiG~Ilyq~l~g~~P 213 (429)
T KOG0595|consen 152 PVLKIADFGFARFLQPGSM---AETLCGSPLYMAPEVI---------------MSQQYDAKADLWSIGTILYQCLTGKPP 213 (429)
T ss_pred ceEEecccchhhhCCchhH---HHHhhCCccccCHHHH---------------HhccccchhhHHHHHHHHHHHHhCCCC
Confidence 578999 89999998765 5689999999999999 2367889999999999999999999 9
Q ss_pred cchhhhhhee
Q 009274 89 FTKELIDYIR 98 (538)
Q Consensus 89 f~~~~~~~~~ 98 (538)
|++.++..+.
T Consensus 214 f~a~t~~eL~ 223 (429)
T KOG0595|consen 214 FDAETPKELL 223 (429)
T ss_pred ccccCHHHHH
Confidence 9998777444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=115.17 Aligned_cols=231 Identities=18% Similarity=0.198 Sum_probs=165.2
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC---ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
.+.--.++|+|.+|+ +..+|.+-....|.||..... +..++++.|...|+++.|.|..+ .+++|+.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccc
Confidence 344445899999999 788999988999999987654 56789999999999999999665 459999999999999
Q ss_pred ccCC-CCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce----eEEecCCCCCeEEEEEe-CC-E
Q 009274 322 FSFP-LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL----SCTMSGHKSAVSTLAVC-NG-V 394 (538)
Q Consensus 322 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~-~~-~ 394 (538)
...+ .-...+...... ....++.++|.++.+++|+....|.+|-.+..+- .+.-+.+.+.|++++|+ ++ +
T Consensus 84 ~~~~~~WkptlvLlRiN---rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRIN---RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred cCCCCeeccceeEEEec---cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 8433 333322222211 2234568899999999999999999998765332 12334578899999999 44 8
Q ss_pred EEEEecCCcEEEEECCC------------------CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 009274 395 LYSGSRDGTIRLWSLSD------------------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF 456 (538)
Q Consensus 395 l~s~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 456 (538)
+++||.|+..+++..-- |+++..+. ...+.+.. +.|+|+|+.|+-.+.|..+.+-|...+
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~-v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHG-VLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceee-eEeCCCCCEeeEecCCCceEEeecCCC
Confidence 88999999999986521 11222222 22344444 699999999999999999999984433
Q ss_pred ---eeeeccccceEEEEEe-CCCEEEEEeCC
Q 009274 457 ---MKSMQTHKGSVFAVFL-EGKWLFTGGWD 483 (538)
Q Consensus 457 ---~~~~~~h~~~v~~~~~-~~~~l~sgs~d 483 (538)
........-+..++.| ..+.++.++.|
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred chhccchhhccCCceeeEeecCCceeecCCC
Confidence 3444434466666666 55556666655
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=124.99 Aligned_cols=191 Identities=15% Similarity=0.177 Sum_probs=140.6
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceee
Q 009274 256 TGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (538)
Q Consensus 256 ~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (538)
.+++|+ |..+++|+.||++|||++.+...+.....|...|.++.|+|++. ++++-+.| ..+||+.+++........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCC
Confidence 667777 89999999999999999988888888889999999999999554 77888888 999999998743332222
Q ss_pred ecccCCceeeeEEEEeecC---C--EEEEeeCCCcEEEEECCCCce-----eEEecCCCCCeEEEEEe--CCEEEEEecC
Q 009274 334 WNEEKDWRYSGIHALTTSG---R--YLYTGSGDRTIKAWSLLDGTL-----SCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (538)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~---~--~l~sg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~--~~~l~s~s~d 401 (538)
.. .. .....+.|+.++ . .++.-..-+.|+.||+...+. ......-...|++++.+ +++++.|+.|
T Consensus 226 ~~--k~-~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FS--KD-EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cc--cc-hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 11 11 111223455554 2 223333456677776643221 11111233578999999 6699999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
|.|-+++..+.+.++..+..|...++. +.|+|+.+++++.+.|.+..+..
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~-ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTG-LTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeee-EEEcCCcCcccccccCCceeEEE
Confidence 999999999999998888887776555 79999999999999998888875
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=119.21 Aligned_cols=233 Identities=13% Similarity=0.209 Sum_probs=150.3
Q ss_pred CCccceeeeeccCcc-eeEEeecCCeEEEEE------------------eecCCCcEEEEEEc--CCEEEEEeCCCcEEE
Q 009274 218 DGADIDQARAAGGVK-DLVNGLSKGNVKFKD------------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHV 276 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~------------------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~i 276 (538)
+..++..+.+..++. .++++..+..+++|. |..|..+|+++.|+ |+.++||+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 344455666666555 677777777777775 45799999999999 889999999999999
Q ss_pred EeCC--------C--------CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecc----
Q 009274 277 WSLK--------D--------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE---- 336 (538)
Q Consensus 277 wd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---- 336 (538)
|... + ....+.+.+|...|..++|+|+ +.++++++.|..+++||+..+...........
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 9765 2 2345667789999999999985 55779999999999999986543211110000
Q ss_pred -----c----------C-C----------cee-e-----------------------------eEEEEeecCCEEEEeeC
Q 009274 337 -----E----------K-D----------WRY-S-----------------------------GIHALTTSGRYLYTGSG 360 (538)
Q Consensus 337 -----~----------~-~----------~~~-~-----------------------------~~~~~~~~~~~l~sg~~ 360 (538)
. . . ... . .-.+|+|+|..+++...
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 0 0 0 000 0 00156667766665432
Q ss_pred ----CCc-----EEEEECCC-CceeEEecCCCCCeEEEEEe-------------------CCEEEEEecCCcEEEEECCC
Q 009274 361 ----DRT-----IKAWSLLD-GTLSCTMSGHKSAVSTLAVC-------------------NGVLYSGSRDGTIRLWSLSD 411 (538)
Q Consensus 361 ----dg~-----i~iwd~~~-~~~~~~~~~h~~~v~~l~~~-------------------~~~l~s~s~dg~i~iwd~~~ 411 (538)
++. .++|+-.. .++...+.+...++..+.++ -++++.-...+.+++||.++
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~ 330 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT 330 (434)
T ss_pred eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc
Confidence 122 23333221 23344444444555555443 02334444456799999988
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
-.++.....-|-..++. ++|++||..++..+.||...+-.
T Consensus 331 ~~P~~~v~nihy~~iTD-iaws~dg~~l~vSS~DGyCS~vt 370 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITD-IAWSDDGSVLLVSSTDGFCSLVT 370 (434)
T ss_pred ccceEEEeeeeeeeecc-eeecCCCcEEEEeccCCceEEEE
Confidence 88777766555444444 68999999999999999877654
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-15 Score=143.63 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=80.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
.+.+|+- |+||.+... +++++.++|||.|||||.+ +| ..|+..+|+|||||+||||.+|+
T Consensus 136 ~~~~KlcdFg~Ar~m~~~--t~vltsikGtPlYmAPElv------~e---------~pyd~~sDlWslGcilYE~~~G~P 198 (808)
T KOG0597|consen 136 GGTLKLCDFGLARAMSTN--TSVLTSIKGTPLYMAPELV------EE---------QPYDHTSDLWSLGCILYELYVGQP 198 (808)
T ss_pred CCceeechhhhhhhcccC--ceeeeeccCcccccCHHHH------cC---------CCccchhhHHHHHHHHHHHhcCCC
Confidence 4678887 899999865 5668999999999999999 44 67889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
||.+.....+.... .-.+...+. ..+.. ...++.-.|.++|.+|.+-.++.
T Consensus 199 PF~a~si~~Lv~~I---------~~d~v~~p~-~~S~~-----------f~nfl~gLL~kdP~~RltW~~Ll 249 (808)
T KOG0597|consen 199 PFYARSITQLVKSI---------LKDPVKPPS-TASSS-----------FVNFLQGLLIKDPAQRLTWTDLL 249 (808)
T ss_pred CchHHHHHHHHHHH---------hcCCCCCcc-cccHH-----------HHHHHHHHhhcChhhcccHHHHh
Confidence 99987665222000 111111111 12222 44477779999999999866543
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-15 Score=140.86 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=83.0
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..||+ |++|....... .++...||+.|||||++ ++ ....|+.|+||||||++|+||+||+ ||
T Consensus 182 ~~KI~DFGlsr~~~~~~~--~~~~~~GT~~wMAPEv~------~~-------~~~~~~~K~DvySFgIvlWEl~t~~~Pf 246 (362)
T KOG0192|consen 182 TLKIADFGLSREKVISKT--SMTSVAGTYRWMAPEVL------RG-------EKSPYTEKSDVYSFGIVLWELLTGEIPF 246 (362)
T ss_pred EEEECCCccceeeccccc--cccCCCCCccccChhhh------cC-------CCCcCCccchhhhHHHHHHHHHHCCCCC
Confidence 67999 56666554321 25569999999999999 42 0357999999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC-ccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
.......+.. .. +........+. ....+..++.+|+..+|.+||...++...+..+.
T Consensus 247 ~~~~~~~~~~------------~v--------~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~ 304 (362)
T KOG0192|consen 247 EDLAPVQVAS------------AV--------VVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIM 304 (362)
T ss_pred CCCCHHHHHH------------HH--------HhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHH
Confidence 9875431110 00 00000011111 3334888999999999999999998888776654
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-15 Score=127.15 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=79.8
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~ 90 (538)
-|++ |+|..+++.++ -..++|||.|||||++ + +..|+..+|||+-||+||-||.|. ||.
T Consensus 152 vKL~~FGvAi~l~~g~~---~~G~~GtP~fmaPEvv------r---------kdpy~kpvDiW~cGViLfiLL~G~~PF~ 213 (355)
T KOG0033|consen 152 VKLADFGLAIEVNDGEA---WHGFAGTPGYLSPEVL------K---------KDPYSKPVDIWACGVILYILLVGYPPFW 213 (355)
T ss_pred eeecccceEEEeCCccc---cccccCCCcccCHHHh------h---------cCCCCCcchhhhhhHHHHHHHhCCCCCC
Confidence 3677 56778886654 5689999999999999 3 367888999999999999999999 999
Q ss_pred hhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
+++...+.-.. .......+...+....++..++++++|..+|.+|.++.+..
T Consensus 214 ~~~~~rlye~I-----------------~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL 265 (355)
T KOG0033|consen 214 DEDQHRLYEQI-----------------KAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEAL 265 (355)
T ss_pred CccHHHHHHHH-----------------hccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHh
Confidence 97666444111 00011112222333334477899999999999999986543
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-15 Score=143.70 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=74.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
.+-+|++ ||.+.---.... ++++||||.|||||++ .+ ..|+.+.|-|||||+|||||+|+
T Consensus 504 eGh~kiADFGlcKe~m~~g~~--TsTfCGTpey~aPEil------~e---------~~Yt~aVDWW~lGVLlyeML~Gq~ 566 (694)
T KOG0694|consen 504 EGHVKIADFGLCKEGMGQGDR--TSTFCGTPEFLAPEVL------TE---------QSYTRAVDWWGLGVLLYEMLVGES 566 (694)
T ss_pred cCcEEecccccccccCCCCCc--cccccCChhhcChhhh------cc---------CcccchhhHHHHHHHHHHHHcCCC
Confidence 4567888 666543322222 6789999999999999 43 78889999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.+++...+. ++... ...++.+. + .+...++.+.|.++|.+|-.+
T Consensus 567 PF~gddEee~FdsI~~d--------~~~yP~~l---s-----------~ea~~il~~ll~k~p~kRLG~ 613 (694)
T KOG0694|consen 567 PFPGDDEEEVFDSIVND--------EVRYPRFL---S-----------KEAIAIMRRLLRKNPEKRLGS 613 (694)
T ss_pred CCCCCCHHHHHHHHhcC--------CCCCCCcc---c-----------HHHHHHHHHHhccCcccccCC
Confidence 99998777444 11100 01111111 0 125568999999999999776
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-14 Score=137.23 Aligned_cols=111 Identities=17% Similarity=0.270 Sum_probs=82.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
.+|++ |+|+++++... ..++++|||.||.||.+ .| ..|+.|||||||||++|||++=+ +|
T Consensus 144 ~VkLgDfGlaK~l~~~~~--~a~tvvGTp~YmcPEil------~d---------~pYn~KSDiWsLGC~~yEm~~lk~aF 206 (426)
T KOG0589|consen 144 KVKLGDFGLAKILNPEDS--LASTVVGTPYYMCPEIL------SD---------IPYNEKSDIWSLGCCLYEMCTLKPAF 206 (426)
T ss_pred ceeecchhhhhhcCCchh--hhheecCCCcccCHHHh------CC---------CCCCccCcchhhcchHHHHHhccccc
Confidence 34999 99999998862 26689999999999999 55 78889999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC-ccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
.+.+...+..-. .......++. ...++..++..+|.++|..||++.++.+.
T Consensus 207 ~a~~m~~Li~ki---------------------~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~ 258 (426)
T KOG0589|consen 207 KASNMSELILKI---------------------NRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR 258 (426)
T ss_pred CccchHHHHHHH---------------------hhccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence 997666222000 0000001111 11237789999999999999999877653
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-14 Score=138.64 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=64.1
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhhc
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (538)
.++|||-|||||++ .| ..|+..||.||||||+||||.|. ||.++++....
T Consensus 347 StVGTPDYiAPEVl------l~---------kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~-------------- 397 (550)
T KOG0605|consen 347 STVGTPDYIAPEVL------LG---------KGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETY-------------- 397 (550)
T ss_pred cccCCccccchHHH------hc---------CCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHH--------------
Confidence 48999999999999 44 55889999999999999999999 99999888322
Q ss_pred chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
.-...|+.-+. .|.. ...-.+..++|+++|+ +|++|...
T Consensus 398 rkI~nwr~~l~-fP~~--~~~s~eA~DLI~rll~-d~~~RLG~ 436 (550)
T KOG0605|consen 398 RKIVNWRETLK-FPEE--VDLSDEAKDLITRLLC-DPENRLGS 436 (550)
T ss_pred HHHHHHhhhcc-CCCc--CcccHHHHHHHHHHhc-CHHHhcCc
Confidence 22222222110 0000 0111347789999999 99999873
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-11 Score=107.64 Aligned_cols=174 Identities=17% Similarity=0.268 Sum_probs=131.3
Q ss_pred CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc-CCCCCcceeeecccCCceeeeEEEEee
Q 009274 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-FPLGHEPLKKWNEEKDWRYSGIHALTT 350 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (538)
+.|.|||=...+++.++. ...+|.++.+.++ . +..-..+.|+||.+. ..+....+......++ .+++.+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~---r-iVvvl~~~I~VytF~~n~k~l~~~et~~NPkG-----lC~~~~ 144 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD---R-IVVVLENKIYVYTFPDNPKLLHVIETRSNPKG-----LCSLCP 144 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC---e-EEEEecCeEEEEEcCCChhheeeeecccCCCc-----eEeecC
Confidence 479999966667777766 5688999999653 2 233356899999987 3333333333332222 556666
Q ss_pred cCC--EEEE-eeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEe--CCEEEEEecCCc-EEEEECCCCceeEEEecCC
Q 009274 351 SGR--YLYT-GSGDRTIKAWSLLDGTL--SCTMSGHKSAVSTLAVC--NGVLYSGSRDGT-IRLWSLSDHSLLTVLEEDS 422 (538)
Q Consensus 351 ~~~--~l~s-g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~ 422 (538)
..+ +|+. |-.-|.|.+-|+...+. ...+.+|.+.|.|++.+ +.+++++|..|+ |||||..+|+.+..++...
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 433 4443 44569999999987655 46778999999999999 669999999998 7999999999999998766
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 009274 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 455 (538)
......+++|+|+..+|++++..|++++|.++.
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 555566689999999999999999999998654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-11 Score=117.59 Aligned_cols=266 Identities=13% Similarity=0.027 Sum_probs=171.9
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeeccc
Q 009274 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (538)
Q Consensus 258 l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (538)
....++.++.++.+|.|..+|..+|+.+...+........... ++..++.++.+|.+..+|..+++.........
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-- 135 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-- 135 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--
Confidence 3445889999999999999999999999887655432223333 23456778889999999998776543322111
Q ss_pred CCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-----EEEEEeCCEEEEEecCCcEEEEECCCC
Q 009274 338 KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-----STLAVCNGVLYSGSRDGTIRLWSLSDH 412 (538)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~l~s~s~dg~i~iwd~~~~ 412 (538)
. .. ......++.++.++.+|.++.||.++|+.++++....... .+....++.++.+..++.+..+|.++|
T Consensus 136 -~--~~--~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 136 -E--VL--SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred -e--ee--cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCC
Confidence 0 00 0111235677888889999999999999988875433221 122334678888999999999999999
Q ss_pred ceeEEEecCCCCc---e---EEE-EEEcCCCCEEEEEeCCCcEEEEeCCcceeeeccccceEEEEEeCCCEEEEEeCCCe
Q 009274 413 SLLTVLEEDSSGA---V---SSV-LSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKT 485 (538)
Q Consensus 413 ~~~~~~~~~~~~~---~---~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~ 485 (538)
+.+.......... . ... ....-.+..+++++.+|.++.||..+....+............++..++.++.||.
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGV 290 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCe
Confidence 8776543211100 0 000 00001356788888999999999654322222111122233446788888899999
Q ss_pred EEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 486 VSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 486 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++.+|..+++.......... .........++.+++++.+|.|+++|..
T Consensus 291 l~~~d~~tG~~~W~~~~~~~----~~~ssp~i~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKY----RQLTAPAVVGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred EEEEECCCCcEEEccccccC----CccccCEEECCEEEEEeCCCEEEEEECC
Confidence 99999999887655422111 1112222347789999999999999864
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-10 Score=111.47 Aligned_cols=237 Identities=13% Similarity=0.153 Sum_probs=147.7
Q ss_pred CCCcEEEEEEc--CCEEEEEe-CCCcEEEEeCC-CCce--EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 251 HRDCVTGLAVG--GGFLFSSS-FDKSIHVWSLK-DFSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s-~dg~i~iwd~~-~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
+.+....++++ +++|++++ .++.|.+|+++ +++. ..... ..+....++++|+++.++++...++.|.+|++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 34556778887 77776654 58899999986 3432 22222 2345678999998777766666799999999974
Q ss_pred CCCC-cceeeecccCCceeeeEEEEeecCCEEEEe-eCCCcEEEEECCCCceeE-------EecCCCCCeEEEEEe--CC
Q 009274 325 PLGH-EPLKKWNEEKDWRYSGIHALTTSGRYLYTG-SGDRTIKAWSLLDGTLSC-------TMSGHKSAVSTLAVC--NG 393 (538)
Q Consensus 325 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~-------~~~~h~~~v~~l~~~--~~ 393 (538)
.... ........... .....++|++++++++ ..++.|.+||+.+...+. ... .......++|+ ++
T Consensus 112 ~g~~~~~~~~~~~~~~---~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 112 DGIPVAPIQIIEGLEG---CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCCCceeeccCCCc---ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCC
Confidence 3221 22221111111 1234688999877554 456999999997633221 111 12345678888 44
Q ss_pred EEEEEec-CCcEEEEECCC--Cc--eeEEEecCCC----CceEEEEEEcCCCCEEEEEeC-CCcEEEEeCCc--ceeeec
Q 009274 394 VLYSGSR-DGTIRLWSLSD--HS--LLTVLEEDSS----GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDK--FMKSMQ 461 (538)
Q Consensus 394 ~l~s~s~-dg~i~iwd~~~--~~--~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~ 461 (538)
+++++.. +++|.+||+.. ++ .+..+..... ......+.++|++++++++.. ++.|.+|+..+ ....+.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 7777765 89999999973 33 2333322110 111223678999999998854 78999998532 222222
Q ss_pred cccc-----eEEEEEeCCCEEEEEeC-CCeEEEEecC
Q 009274 462 THKG-----SVFAVFLEGKWLFTGGW-DKTVSVQELA 492 (538)
Q Consensus 462 ~h~~-----~v~~~~~~~~~l~sgs~-dg~v~iwd~~ 492 (538)
.+.. .-..++++|++|++++. +++|.+|+++
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2211 22345569999998776 8999999875
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=117.15 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=119.0
Q ss_pred CCCcEEEEEEc-----CCEEEEEeCCCcEEEEeCCCCce----------EEEEecCCcCeEEEEEecCCCCEEEEEcCCC
Q 009274 251 HRDCVTGLAVG-----GGFLFSSSFDKSIHVWSLKDFSH----------VHTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (538)
Q Consensus 251 h~~~V~~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 315 (538)
-.+.+.|..+. .-++++|-.+|.|.+||+.++.. ......|..+|.++.|.+.-..= ++|+.+.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isgga~d 227 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISGGADD 227 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCCCccc
Confidence 45677777754 23467788899999999998733 33345699999999997533222 7788888
Q ss_pred cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C-C
Q 009274 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-G 393 (538)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-~ 393 (538)
.+..|+++.....-.+.....-+. .-..-..+-||++.++++++|+.|++|..++.+++..++-|...|++++|+ + +
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred cceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 999999875432222222111111 111234788999999999999999999999999999999999999999999 3 6
Q ss_pred EEEEEecCCcEEEEEC
Q 009274 394 VLYSGSRDGTIRLWSL 409 (538)
Q Consensus 394 ~l~s~s~dg~i~iwd~ 409 (538)
.+++++.|+.|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999986
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-12 Score=120.28 Aligned_cols=257 Identities=17% Similarity=0.189 Sum_probs=164.9
Q ss_pred cCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEe-------cCCCCEEEEEcCCCcEEEEE
Q 009274 250 GHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV-------DEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 250 ~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-------~~~~~~l~s~~~dg~i~vwd 321 (538)
.|...|.|+.|. ...++.++.|..+.+|.--+......++-....+....+. ..+...++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 466777788888 6666667777777777644333333332222222221111 12344678899999999886
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEE
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSG 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~ 398 (538)
-.. +....+. .|.. ...+-.++++|.-|++++.||.|++|. ++|-...++.....+|+|++|. ++.+++.
T Consensus 92 k~~-rVE~sv~---AH~~--A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 92 KSA-RVERSIS---AHAA--AISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred ccc-hhhhhhh---hhhh--hhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 431 1111111 1111 112346889999999999999999999 6777666666677899999998 2345444
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe-CCcceeeeccccceEEEEEeCC-CE
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR-NDKFMKSMQTHKGSVFAVFLEG-KW 476 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~h~~~v~~~~~~~-~~ 476 (538)
+ +.+.+=-+.....+-..+.| .+.+.+ +.|++..+.+++|++|-..++|| .+..+..-..|.-+|++++|+. ..
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAH-DGiiL~-~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAH-DGLVLS-LSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred C--CeEEEeecccccceeEEecc-CcEEEE-eecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccc
Confidence 3 45666666655556666665 454444 69999999999999999999999 6677888888999999999943 44
Q ss_pred EEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEE
Q 009274 477 LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKV 533 (538)
Q Consensus 477 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~v 533 (538)
++.+|. +++|+=.. ..+++....+++||. +++|+..|.+.+
T Consensus 241 ~~v~S~-nt~R~~~p---------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWSY-NTARFSSP---------------RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeee-eeeeecCC---------------CccceEEEEEcCCCceeeccccCceEEE
Confidence 555543 34441111 133344444445665 556777776643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=108.26 Aligned_cols=265 Identities=14% Similarity=0.154 Sum_probs=162.9
Q ss_pred CCCcEEEEeCCCCceEE--EE-ecCCcCeEEEEEe--cCCCC-EEEEEcCCCcEEEEEccCCCCCcceeeecccCCcee-
Q 009274 270 FDKSIHVWSLKDFSHVH--TF-KGHDHKVMAVVYV--DEDQP-LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRY- 342 (538)
Q Consensus 270 ~dg~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~~--~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~- 342 (538)
..|.+.+|++.+.+... ++ ...+..+..+.|. +.++. .++-+..+|.|.++..........+...........
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678888887654432 22 2234567777776 33333 567778889999998764433333333222221111
Q ss_pred eeEEEEeecCCEEEEeeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECC-CCceeE
Q 009274 343 SGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL--SCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLS-DHSLLT 416 (538)
Q Consensus 343 ~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~-~~~~~~ 416 (538)
.....++..+..++++-.+|.+.+-+...... ++.++.|.-++....|+ ++++++|+.|+.+..||+| .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 23446677788899999999999666555444 44789999999999998 6799999999999999999 344444
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeecc--ccceEEEEEe----CCCEEEEEeCCCeEEEEe
Q 009274 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQT--HKGSVFAVFL----EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--h~~~v~~~~~----~~~~l~sgs~dg~v~iwd 490 (538)
.-..-|...+.++.+-.|.+.++++|+.|..|++||++..-+.+.. -.+.|+.+.. .+..|+++-.+ -.+|-+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~ 282 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN-GAKILD 282 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc-CceEEE
Confidence 4222234455666666778899999999999999998754443322 3367777764 33334444443 466766
Q ss_pred cCCCeeEeeeecCCcccCCCceEEEEEe--CCEEEEEE-CCCeEE-EEE
Q 009274 491 LAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGC-ADRTVK-VYY 535 (538)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~-~dg~v~-vw~ 535 (538)
.+.+.............+.+.+....|. ++.+++++ .|+.++ +|-
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 6654432111111111122222222332 34477754 577755 774
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-11 Score=114.06 Aligned_cols=188 Identities=19% Similarity=0.206 Sum_probs=135.3
Q ss_pred eEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecC
Q 009274 344 GIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 344 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 421 (538)
.++++..+|..+++|+.||++|+|+..+...+.....|...|.++.|+ +.+|++-+.| ..+||+.+++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 577999999999999999999999988888888888899999999999 4489999999 9999999999777766643
Q ss_pred CCCceEEEEEEcCCC---C--EEEEEeCCCcEEEEeCC-----cce--eeeccccceEEEEE--eCCCEEEEEeCCCeEE
Q 009274 422 SSGAVSSVLSLTAVQ---H--TLVVSHESGSIKVWRND-----KFM--KSMQTHKGSVFAVF--LEGKWLFTGGWDKTVS 487 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~---~--~l~~~~~dg~i~iwd~~-----~~~--~~~~~h~~~v~~~~--~~~~~l~sgs~dg~v~ 487 (538)
........+.|+.++ . .++....-+.|+.||+. +.. .+.......|.+++ .+|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 344444445777666 2 33333445667766632 111 11111223455554 5999999999999999
Q ss_pred EEecCCCeeEeeeecCCcccCCCceEEE-EEeCCE-EEEEECCCeEEEEEc
Q 009274 488 VQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 488 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-l~sg~~dg~v~vw~~ 536 (538)
|++..+-+.....+.. |...++.+ +.|+.+ +++.+.|....|..+
T Consensus 307 i~~~~~lq~~~~vk~a----H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEA----HLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EEEeceeeeeEeehhh----heeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999988766555443 33355555 445554 677777777777654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=122.08 Aligned_cols=283 Identities=13% Similarity=0.091 Sum_probs=205.0
Q ss_pred cCCCCCCCccceeeeeccCcceeEEeecCCeEEEEEe----------ecCCCcEEEEEEc----CCEEEEEeCCCcEEEE
Q 009274 212 LGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL----------QGHRDCVTGLAVG----GGFLFSSSFDKSIHVW 277 (538)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l----------~~h~~~V~~l~~~----~~~l~s~s~dg~i~iw 277 (538)
....+...+.++.+.+...+..+++++.+-.+.+|+. .||...|..-.|- ...+++++.||.|++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3344445566788888888888999998888888873 4788888776664 6789999999999987
Q ss_pred eCC-CCce--EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCC-ceeeeEEEEeecC-
Q 009274 278 SLK-DFSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD-WRYSGIHALTTSG- 352 (538)
Q Consensus 278 d~~-~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 352 (538)
.+. ++.+ ...+..|.++|.-++.-|....-|.+++.|+.+.-+|++.......+........ .......++.|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 764 3333 3445679999999999999999999999999999999987665544443222222 0122233455543
Q ss_pred CEEEEeeCCCcEEEEECCCCce------eEEec------CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCC--C----
Q 009274 353 RYLYTGSGDRTIKAWSLLDGTL------SCTMS------GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD--H---- 412 (538)
Q Consensus 353 ~~l~sg~~dg~i~iwd~~~~~~------~~~~~------~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~--~---- 412 (538)
..+++|+.|..+++||.+.-.. +..+. ...-.|+|++|+ +.-++++..|-.|+++.-.. |
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 3899999999999999875321 22222 123468999999 45777777788899995432 2
Q ss_pred ------ceeEE-EecCCCC-ceEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcceeeeccccceEEEEEe--CCCEEEEE
Q 009274 413 ------SLLTV-LEEDSSG-AVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL--EGKWLFTG 480 (538)
Q Consensus 413 ------~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 480 (538)
..+.. +++|... .+..+-.|-|...++++|+.-|.|.||+ ..+.++.+.+...-|+|+.+ .-..|++.
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 11222 4454332 2444557789999999999999999999 44677778886668999976 66789999
Q ss_pred eCCCeEEEEecCCC
Q 009274 481 GWDKTVSVQELAGD 494 (538)
Q Consensus 481 s~dg~v~iwd~~~~ 494 (538)
|-|..|+||-..+.
T Consensus 455 Gid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 455 GIDHDVKIWTPLTA 468 (559)
T ss_pred CCccceeeecCCcc
Confidence 99999999987443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=123.23 Aligned_cols=196 Identities=16% Similarity=0.243 Sum_probs=142.3
Q ss_pred ceeEEeecCCeEEEEE--------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEe
Q 009274 232 KDLVNGLSKGNVKFKD--------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV 301 (538)
Q Consensus 232 ~~~~~~~~~~~~~i~~--------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 301 (538)
..++..+++|+..+-+ ...|.++|.|-.|+ |.-|+|++.||.|++|. .+|-...++.....+|.|++|-
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 3455566666655543 56899999999999 89999999999999998 4565555666678899999999
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCC
Q 009274 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH 381 (538)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 381 (538)
|+.+..+++.+ +.+.+=.+. ....+-.|..|.+. .-++.+++..+.+++|+.|-..++||. .|..+..-..|
T Consensus 155 p~S~~vl~c~g--~h~~IKpL~---~n~k~i~WkAHDGi--iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ 226 (737)
T KOG1524|consen 155 PNSNSIVFCQG--GHISIKPLA---ANSKIIRWRAHDGL--VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAE 226 (737)
T ss_pred CCCCceEEecC--CeEEEeecc---cccceeEEeccCcE--EEEeecCccccceeecCCceeEEeecc-cCcccccCChh
Confidence 99988887766 444443332 22233444555442 223456667789999999999999995 67778777889
Q ss_pred CCCeEEEEEeCC-EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEE
Q 009274 382 KSAVSTLAVCNG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (538)
Q Consensus 382 ~~~v~~l~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 450 (538)
.-+|++++|.++ .++.+| -++++ +.....+.+.. ++|++||..+++|+..|.+.+
T Consensus 227 ey~ITSva~npd~~~~v~S-~nt~R------------~~~p~~GSifn-lsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 227 EYAITSVAFNPEKDYLLWS-YNTAR------------FSSPRVGSIFN-LSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceeeeeeccccceeeee-eeeee------------ecCCCccceEE-EEEcCCCceeeccccCceEEE
Confidence 999999999954 444444 34455 33333344444 799999999999999988765
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-14 Score=136.85 Aligned_cols=117 Identities=13% Similarity=0.151 Sum_probs=79.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|+. |+++.+... ....+||+.|||||++.+. ...++.++|||||||++|||++|+
T Consensus 159 ~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~-------------~~~~~~k~Di~SlGvil~el~~g~~ 220 (283)
T PHA02988 159 NYKLKIICHGLEKILSSP-----PFKNVNFMVYFSYKMLNDI-------------FSEYTIKDDIYSLGVVLWEIFTGKI 220 (283)
T ss_pred CCcEEEcccchHhhhccc-----cccccCcccccCHHHhhhc-------------cccccchhhhhHHHHHHHHHHHCCC
Confidence 4568888 556655433 2246899999999998221 145789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||...+...+........ .. ...+ .....+.+++.+||+.+|..||+..++...+.++
T Consensus 221 Pf~~~~~~~~~~~i~~~~------~~--------------~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~ 279 (283)
T PHA02988 221 PFENLTTKEIYDLIINKN------NS--------------LKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLY 279 (283)
T ss_pred CCCCCCHHHHHHHHHhcC------CC--------------CCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence 998764442210000000 00 0000 1122478899999999999999999998877765
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-14 Score=134.16 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=72.6
Q ss_pred ccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeecccc
Q 009274 25 DKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTK 103 (538)
Q Consensus 25 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~ 103 (538)
+..+..| .+++|||.|||||++++.. -.|+.|+||||||++..||.+|. ||...-+..++-..
T Consensus 181 ~R~~~rf-~tfvgtp~wmAPEvl~q~~-------------~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~t-- 244 (516)
T KOG0582|consen 181 DRQVTRF-NTFVGTPCWMAPEVLMQQL-------------HGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLT-- 244 (516)
T ss_pred ceeeEee-ccccCcccccChHHhhhcc-------------cCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHH--
Confidence 3334433 7899999999999984444 33889999999999999999999 99886444222111
Q ss_pred ccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 104 ASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
++..++.+. .......+...-..+..+++..||.++|.+||++.++.++
T Consensus 245 -------Lqn~pp~~~--t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh 293 (516)
T KOG0582|consen 245 -------LQNDPPTLL--TSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH 293 (516)
T ss_pred -------hcCCCCCcc--cccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence 111111100 0001111111111247789999999999999999887664
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-13 Score=126.68 Aligned_cols=223 Identities=15% Similarity=0.250 Sum_probs=165.0
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce
Q 009274 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL 374 (538)
Q Consensus 295 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 374 (538)
-+.+.|+. ++..++.|+.-|.+-.+|+.+......+.......+ ..|-.+.++++++ ....+++|| +.|..
T Consensus 132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~D------v~~LHneq~~AVA-QK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRD------VTFLHNEQFFAVA-QKKYVYVYD-NNGTE 202 (545)
T ss_pred CeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhh------hhhhcchHHHHhh-hhceEEEec-CCCcE
Confidence 35677766 455678888999999999987654333322211111 1233345566655 568899999 57888
Q ss_pred eEEecCCCCCeEEEEEeCC--EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 375 SCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 375 ~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
++.++.| ..|..+.|-+. +|++++..|.++.-|+.+|+.+..+.... + ...++.-+|-+..+-+|...|+|.+|.
T Consensus 203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G-~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-G-RTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-C-ccchhhcCCccceEEEcCCCceEEecC
Confidence 8888754 56888999844 77888999999999999999988887542 2 344578889899999999999999998
Q ss_pred --CCcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECC
Q 009274 453 --NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCAD 528 (538)
Q Consensus 453 --~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 528 (538)
..+++..+..|.++|.++++ +|++++|.|.|..++|||++........... .....+.+++.-+++++..
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp------~~a~~ls~SqkglLA~~~G 353 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP------HPASNLSLSQKGLLALSYG 353 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC------CCccccccccccceeeecC
Confidence 55688889999999999987 8999999999999999999987633322221 1234445556667777777
Q ss_pred CeEEEEE
Q 009274 529 RTVKVYY 535 (538)
Q Consensus 529 g~v~vw~ 535 (538)
..|.||.
T Consensus 354 ~~v~iw~ 360 (545)
T KOG1272|consen 354 DHVQIWK 360 (545)
T ss_pred Ceeeeeh
Confidence 7899995
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-14 Score=137.24 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=78.9
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~ 90 (538)
-|+. |+..++..... -.++++|||.|||||++ .+..|+++.||||||+++.||+-|+ ||-
T Consensus 408 vKltDFGFcaqi~~~~~--KR~TmVGTPYWMAPEVv---------------trk~YG~KVDIWSLGIMaIEMveGEPPYl 470 (550)
T KOG0578|consen 408 VKLTDFGFCAQISEEQS--KRSTMVGTPYWMAPEVV---------------TRKPYGPKVDIWSLGIMAIEMVEGEPPYL 470 (550)
T ss_pred EEEeeeeeeeccccccC--ccccccCCCCccchhhh---------------hhcccCccccchhhhhHHHHHhcCCCCcc
Confidence 4777 77777776542 27789999999999999 3467889999999999999999999 887
Q ss_pred hhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
.+.+-..+.+.-.+. .+.....+.++. .+.+.+.+||..++++|+++.++.++
T Consensus 471 nE~PlrAlyLIa~ng-------~P~lk~~~klS~-----------~~kdFL~~cL~~dv~~RasA~eLL~H 523 (550)
T KOG0578|consen 471 NENPLRALYLIATNG-------TPKLKNPEKLSP-----------ELKDFLDRCLVVDVEQRASAKELLEH 523 (550)
T ss_pred CCChHHHHHHHhhcC-------CCCcCCccccCH-----------HHHHHHHHHhhcchhcCCCHHHHhcC
Confidence 544431111110000 011111122222 37789999999999999999887763
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-12 Score=120.53 Aligned_cols=192 Identities=15% Similarity=0.210 Sum_probs=134.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEe----cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeeccc
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFK----GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (538)
+--++.|-.-|.|.+.|....+..+.+. ..+..|+++.|.|.+..+++.+-.+|.++++|..-......
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~------- 257 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA------- 257 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC-------
Confidence 4457777778888888865432222111 23478999999999999999999999999998732111000
Q ss_pred CCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCcee
Q 009274 338 KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL 415 (538)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 415 (538)
......+++..+......+ ..+..++..+.--.+.|+..+|+ +.+|++.+.||.+||||..+.+++
T Consensus 258 ------p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 258 ------PSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred ------CcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence 1112233454444432211 11224555554456689999999 559999999999999999988876
Q ss_pred EEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEeCC
Q 009274 416 TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFLEG 474 (538)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~~~ 474 (538)
..++.-- +... +++|+|||++|++|++|..|.||.. ++.+..=++|.++|..++||.
T Consensus 326 g~mkSYF-GGLL-CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSYF-GGLL-CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHhhc-cceE-EEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 6655432 2233 3699999999999999999999984 456777789999999999986
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-11 Score=109.55 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=165.8
Q ss_pred CCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCceEEE------EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 252 RDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSHVHT------FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 252 ~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
...|++++|. .+.+...+.|..+..+.++....... ......+|..++.. ...+++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence 3556777776 44556665777777777766544433 33456777777763 33678899999999999
Q ss_pred ccCCCCCc-ceeeecccCCceeeeEEEEeecCCEEEEeeCC--CcEEEEECCCCceeEEecCCC---------CCeEEEE
Q 009274 322 FSFPLGHE-PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD--RTIKAWSLLDGTLSCTMSGHK---------SAVSTLA 389 (538)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~h~---------~~v~~l~ 389 (538)
...+.... .+..+..+. ....+.....+...+++|+.. ..+.+||+.+.+.+++-+.-. -.++++.
T Consensus 132 ~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 88654221 111111111 111111112234577789998 899999999887666544322 2356677
Q ss_pred Ee-C---CEEEEEecCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc---eeeec
Q 009274 390 VC-N---GVLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF---MKSMQ 461 (538)
Q Consensus 390 ~~-~---~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~ 461 (538)
|- + ..+++++.-+.+++||.+.++ ++..+.... ...+.+...|+++++++|..-|.+..||.+.. ...++
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E--~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE--NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEecccc--CcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 76 2 389999999999999999764 455665432 23444788999999999999999999997652 33477
Q ss_pred cccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeee
Q 009274 462 THKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 462 ~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 500 (538)
+-.+.+.++.. ...+++++|-|..|||+|+.+.++....
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 88899999876 5579999999999999999997654433
|
|
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-13 Score=130.97 Aligned_cols=91 Identities=27% Similarity=0.429 Sum_probs=67.8
Q ss_pred hhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhh
Q 009274 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (538)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (538)
++|+||..|.+||+| .....+++||||+||||||+||.|. ||.+.+...++
T Consensus 245 ~SFVGTAeYVSPElL---------------~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliF------------- 296 (604)
T KOG0592|consen 245 SSFVGTAEYVSPELL---------------NDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIF------------- 296 (604)
T ss_pred cceeeeecccCHHHh---------------cCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHH-------------
Confidence 569999999999999 3367889999999999999999999 99997666444
Q ss_pred cchhhHHHHHHHHHHHhhhcCccc-hHHHHHhhhhccCCCCCcchhhHHH
Q 009274 112 LGMYMAWMEKVTYLLENKFGSEFV-SLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
+++..+.. ..+..|+ ...+++.+.|-.+|..|.++.+|.+
T Consensus 297 --------qkI~~l~y-~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~ 337 (604)
T KOG0592|consen 297 --------QKIQALDY-EFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKA 337 (604)
T ss_pred --------HHHHHhcc-cCCCCCCHHHHHHHHHHHccCccccccHHHHhh
Confidence 00111100 1111222 2667999999999999999977665
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-13 Score=135.60 Aligned_cols=115 Identities=17% Similarity=0.323 Sum_probs=79.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
.+|-||. |-++|+-.. .| ++-+|.||..|||||++ + .....|+.++|||||||++.||.||+
T Consensus 712 SGvlKISDFGTsKRLAgi-nP-~TETFTGTLQYMAPEvI-----D--------qG~RGYG~aADIWS~GCT~vEMATGrP 776 (1226)
T KOG4279|consen 712 SGVLKISDFGTSKRLAGI-NP-CTETFTGTLQYMAPEVI-----D--------QGPRGYGKAADIWSFGCTMVEMATGRP 776 (1226)
T ss_pred cceEEecccccchhhccC-Cc-cccccccchhhhChHhh-----c--------cCCcCCCchhhhhhccceeEeeccCCC
Confidence 4788998 556776644 33 24479999999999999 1 12456889999999999999999999
Q ss_pred ccchh-hhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKE-LID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||... +++ .+. + .. +....+...+.++.. ....+++|+..+|..||++.++..
T Consensus 777 PF~ElgspqAAMF--k--VG-----myKvHP~iPeelsae-----------ak~FilrcFepd~~~R~sA~~LL~ 831 (1226)
T KOG4279|consen 777 PFVELGSPQAAMF--K--VG-----MYKVHPPIPEELSAE-----------AKNFILRCFEPDPCDRPSAKDLLQ 831 (1226)
T ss_pred CeeecCChhHhhh--h--hc-----ceecCCCCcHHHHHH-----------HHHHHHHHcCCCcccCccHHHhcc
Confidence 99864 333 111 0 00 111222222333333 455999999999999999877554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=117.68 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=123.9
Q ss_pred eeeeccCcceeEEeecCCeEEEEEee-------------cCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC------
Q 009274 224 QARAAGGVKDLVNGLSKGNVKFKDLQ-------------GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD------ 281 (538)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~l~-------------~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~------ 281 (538)
.....+.+-.++.+...|.+.+.+.. -.+..|+|+.|- ...++.+-.+|.+.+||.+-
T Consensus 178 ~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 178 SFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred ccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 34445667778888888877665421 134789999997 67788888899999997531
Q ss_pred --------C--------------ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCC
Q 009274 282 --------F--------------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD 339 (538)
Q Consensus 282 --------~--------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 339 (538)
+ .++..+..-.+.|...+|+| ++.+|++.+.||.++|+|+.+......++.+...
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-- 334 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-- 334 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccc--
Confidence 1 11222223345788999999 6678899999999999999876555555444332
Q ss_pred ceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe
Q 009274 340 WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391 (538)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 391 (538)
.-+++|+|||++|++|++|-.|.||.+..++.+..-.+|++.|+.|+|+
T Consensus 335 ---LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 335 ---LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ---eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 2377999999999999999999999999999999999999999999986
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.2e-11 Score=118.04 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=137.8
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCC---CcEEEEeCCCCce--EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFD---KSIHVWSLKDFSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
..+..|...+.+.+|+ |+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|++..++++.+.+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 4466788889999999 8888887654 3699999988754 3333333 446899998877777677888777
Q ss_pred EEEc--cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee-CCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--C
Q 009274 319 VWSF--SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 319 vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~ 392 (538)
||.+ .++. ......+.. ......++|||+.++.++ .+|...+|+++.. .....+ .+.. .+..|+ +
T Consensus 274 Iy~~d~~~~~----~~~lt~~~~--~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG 344 (429)
T PRK01742 274 IYVMGANGGT----PSQLTSGAG--NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADG 344 (429)
T ss_pred EEEEECCCCC----eEeeccCCC--CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCC
Confidence 6654 3332 112222111 122458899999766554 5788888876532 222223 3433 456777 4
Q ss_pred CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe----CCcceeeeccccceEE
Q 009274 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR----NDKFMKSMQTHKGSVF 468 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd----~~~~~~~~~~h~~~v~ 468 (538)
+.++..+.++ +.+||+.+++........ .. ....|+|+|++++.++.++...+|+ .++..+.+..|.+.+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-~~---~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~ 419 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF-LD---ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVK 419 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC-CC---CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCC
Confidence 5777777655 566999988754332221 11 1257999999999999999888776 2456777777877666
Q ss_pred EEEe
Q 009274 469 AVFL 472 (538)
Q Consensus 469 ~~~~ 472 (538)
..+|
T Consensus 420 ~p~w 423 (429)
T PRK01742 420 FPAW 423 (429)
T ss_pred Cccc
Confidence 6655
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-13 Score=133.66 Aligned_cols=110 Identities=23% Similarity=0.286 Sum_probs=76.8
Q ss_pred eeeeec--ccccccc-ccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccc-cccccCcchhhhhhhhhhhhcC
Q 009274 12 SVAKVG--CVGSRIC-DKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEF-SVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~-~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~-~~~~~sDi~slG~~l~~lltg~ 87 (538)
.-.|+. |+|.... .++ .+++.+|||+|+|||++ .| +. --+.++||||+||+||.|++|+
T Consensus 158 ~~~Kl~DFG~s~~~~~~~~---~l~t~cGsp~Y~aPEvl------~~--------~~~Y~g~~aDvWS~GViLy~ml~G~ 220 (370)
T KOG0583|consen 158 GNLKLSDFGLSAISPGEDG---LLKTFCGSPAYAAPEVL------SG--------KGTYSGKAADVWSLGVILYVLLCGR 220 (370)
T ss_pred CCEEEeccccccccCCCCC---cccCCCCCcccCCHHHh------CC--------CCCcCCchhhhhhhHHHHHHHHhCC
Confidence 446777 8888874 322 38899999999999999 43 22 2257899999999999999999
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCc--cchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSE--FVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||+..+...+.. ........+ +.. -.++..++.++|..+|.+|++..++..
T Consensus 221 ~PF~d~~~~~l~~-----------------ki~~~~~~~-----p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~ 274 (370)
T KOG0583|consen 221 LPFDDSNVPNLYR-----------------KIRKGEFKI-----PSYLLSPEARSLIEKMLVPDPSTRITLLEILE 274 (370)
T ss_pred CCCCCccHHHHHH-----------------HHhcCCccC-----CCCcCCHHHHHHHHHHcCCCcccCCCHHHHhh
Confidence 999865442220 000000000 011 224678999999999999999988773
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=104.14 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=153.4
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEE
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~i 366 (538)
.+..-..+|+|.+|+++ ...++.+.....|.||.......-.....+..+.. .. ..+++++..+.|++|+.|..-++
T Consensus 5 ~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~v-tgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IV-TGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred EeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ce-eEEeecCCCCceeEccCCCCccc
Confidence 34444579999999885 45668888889999999876654455555555443 22 34688899999999999999999
Q ss_pred EECCC-C--ceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCcee---EEEecCCCCceEEEEEEcCCCCE
Q 009274 367 WSLLD-G--TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL---TVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 367 wd~~~-~--~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
|.... + ++...+..++..++++.|+ ++.+++||..+.|.+|-+....-- +.++......+.+ +.|+|++-+
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s-ldWhpnnVL 160 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS-LDWHPNNVL 160 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee-eeccCCcce
Confidence 99843 3 3455566789999999999 679999999999999988654422 1222233333444 799999999
Q ss_pred EEEEeCCCcEEEEe-----CC---------------cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 439 LVVSHESGSIKVWR-----ND---------------KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 439 l~~~~~dg~i~iwd-----~~---------------~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+++|+.|+..++|. .+ .+..++....+.+..+.| +|..|+-.+.|..+.+=|.....
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999985 11 122233345678888877 79999999999999999988765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-11 Score=109.72 Aligned_cols=206 Identities=11% Similarity=0.136 Sum_probs=153.3
Q ss_pred eecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCc----eEEEEecCCcCeEEEEEecCCCCEEEEEcCC--CcEEEEE
Q 009274 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GGIFVWS 321 (538)
Q Consensus 248 l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd 321 (538)
.....++|..++..+..|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-++....++++|+.. ..+.+||
T Consensus 101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 445667888888888999999999999999987432 33334433 5677788888888899999999 8999999
Q ss_pred ccCCCCCcceeeecccCC----ceeeeEEEEeec--CCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--C
Q 009274 322 FSFPLGHEPLKKWNEEKD----WRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~ 392 (538)
++..+....-+......- .....-..|-+. ...|++++.-+.+++||.+.+ +++..+.-...+++++... +
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 987633222211111100 011111233333 558999999999999999865 5788887778899998877 6
Q ss_pred CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 009274 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 455 (538)
+++++|..-+.+..||++.++..........+.+.. +..+|.+.++++++-|+.+||+|..+
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs-ih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS-IHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcce-EEEcCCCceEEeeccceeEEEeeccc
Confidence 799999999999999999999877744333555555 58889999999999999999999664
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-10 Score=100.47 Aligned_cols=232 Identities=14% Similarity=0.186 Sum_probs=149.6
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEE-EEeeCC------CcEEE
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL-YTGSGD------RTIKA 366 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~d------g~i~i 366 (538)
...+++|+.+.. .++.| .|.-.++|+.+.-+........... ..+..+-.-.+++ ++|+.+ ..|.|
T Consensus 7 ~~lsvs~NQD~S-cFava-~~~Gfriyn~~P~ke~~~r~~~~~G-----~~~veMLfR~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVA-TDTGFRIYNCDPFKESASRQFIDGG-----FKIVEMLFRSNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCc-eEEEE-ecCceEEEecCchhhhhhhccccCc-----hhhhhHhhhhceEEEecCCCCCCCCCceEEE
Confidence 345588866443 44444 5566899988743221111111111 1122222334433 344433 47999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECC-CCceeEEEecCCCCceEEEEEEcCCCCEEEE-EeC
Q 009274 367 WSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLS-DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV-SHE 444 (538)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 444 (538)
||-...+++.++. ...+|.++.+..+.+++.- ++.|++|... +.+.++.+.......-.++++-..+..+|+. |-.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 9976777887776 6789999999977777665 5789999998 5566666654432222332333333344554 345
Q ss_pred CCcEEEEeCCc----ceeeeccccceEEEEEe--CCCEEEEEeCCCe-EEEEecCCCeeEeeeecCCcccCCCceEEEE-
Q 009274 445 SGSIKVWRNDK----FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKT-VSVQELAGDEFEEDVIPTGAIPCGSVITALL- 516 (538)
Q Consensus 445 dg~i~iwd~~~----~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 516 (538)
-|.|+|-|+.. ....+..|.+.|.|++. +|..+||+|..|+ |||||..+++......... ..+.+.++.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---d~A~iy~iaF 234 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---DRADIYCIAF 234 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---chheEEEEEe
Confidence 69999999543 24678899999999987 9999999999997 7999999998776654332 233445554
Q ss_pred EeCCE-EEEEECCCeEEEEEcC
Q 009274 517 YWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 517 ~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
+++.. |+++|+.|+|+||.+.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEee
Confidence 45555 6678889999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=121.87 Aligned_cols=207 Identities=12% Similarity=0.139 Sum_probs=134.4
Q ss_pred CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC--CcEEEEEccCCCCCcceeeecccCCceeeeEEEE
Q 009274 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL 348 (538)
Q Consensus 271 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (538)
+..|.+||.+... .+.+..|...+.+..|+|++..++.+...+ ..|++||+.++... .+.....+. ...+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~-----~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHN-----GAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCcc-----CceeE
Confidence 4689999986544 566777888999999999877665544332 47999999765322 122222111 13589
Q ss_pred eecCCEEEEee-CCCcEEE--EECCCCceeEEecCCCCCeEEEEEe--CCEEE-EEecCCcEEEEECCCCc-eeEEEecC
Q 009274 349 TTSGRYLYTGS-GDRTIKA--WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLY-SGSRDGTIRLWSLSDHS-LLTVLEED 421 (538)
Q Consensus 349 ~~~~~~l~sg~-~dg~i~i--wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~-~~~~~~~~ 421 (538)
+|||+.|+.++ .+|.+.+ ||+.+++ ...+..+...+.+..|+ ++.++ ++..++...+|++.... ....+ .+
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 99999887764 6776555 4666655 44556677778889999 34555 44467888888875432 22222 22
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc-eeee-ccccceEEEEEeCCCEEEEEeCCCeEEEEec
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF-MKSM-QTHKGSVFAVFLEGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~-~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~ 491 (538)
.. . ...|+|+|+.++..+.++ +.+||..+. ...+ ..+...-.+++++|++|++++.++.+.+|++
T Consensus 334 -~~--~-~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 334 -RG--Y-SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CC--C-CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 22 2 257999999998887765 556885432 2222 2222222345669999999999998888875
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-13 Score=129.99 Aligned_cols=114 Identities=19% Similarity=0.328 Sum_probs=78.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+-|-||- |-++..+++.+ ...|+||.+|||||+| +. .....|.|||||||||+|||||+
T Consensus 248 ~d~VKIsDFGTS~e~~~~ST---kMSFaGTVaWMAPEvI------rn---------ePcsEKVDIwSfGVVLWEmLT~Ei 309 (904)
T KOG4721|consen 248 DDVVKISDFGTSKELSDKST---KMSFAGTVAWMAPEVI------RN---------EPCSEKVDIWSFGVVLWEMLTGEI 309 (904)
T ss_pred cceEEeccccchHhhhhhhh---hhhhhhhHhhhCHHHh------hc---------CCcccccceehhHHHHHHHHhcCC
Confidence 4466888 55688887743 6689999999999999 43 67889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||..-....|..=- ..+.+.+..+-. -|+. +.-++.+|+.-.|..||+...+..+
T Consensus 310 PYkdVdssAIIwGV---GsNsL~LpvPst--------cP~G--------fklL~Kqcw~sKpRNRPSFrqil~H 364 (904)
T KOG4721|consen 310 PYKDVDSSAIIWGV---GSNSLHLPVPST--------CPDG--------FKLLLKQCWNSKPRNRPSFRQILLH 364 (904)
T ss_pred CccccchheeEEec---cCCcccccCccc--------CchH--------HHHHHHHHHhcCCCCCccHHHHHHH
Confidence 99876555443100 000000111111 1111 5568888999999999997655543
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-13 Score=121.18 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=80.6
Q ss_pred eeeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 10 TKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
|.+.||++ |+|..+-+- ++ -.-++.|||-|||||+++|..++ .++||||||++..||.-|+
T Consensus 164 T~G~AKLADFGVAGQLTDT-MA-KRNTVIGTPFWMAPEVI~EIGY~---------------~~ADIWSLGITaIEMAEG~ 226 (502)
T KOG0574|consen 164 TDGIAKLADFGVAGQLTDT-MA-KRNTVIGTPFWMAPEVIEEIGYD---------------TKADIWSLGITAIEMAEGR 226 (502)
T ss_pred ccchhhhhhccccchhhhh-HH-hhCccccCcccccHHHHHHhccc---------------hhhhHhhhcchhhhhhcCC
Confidence 67899999 788777643 22 14479999999999999766544 8999999999999999999
Q ss_pred -ccchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 -QFTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 -pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||..-.+. .|+.+-++ +++..+ .|+. +..+..+.+++||-+.|++|-++..+.+
T Consensus 227 PPYsDIHPMRAIFMIPT~----------PPPTF~--KPE~-------WS~~F~DFi~~CLiK~PE~R~TA~~L~~ 282 (502)
T KOG0574|consen 227 PPYSDIHPMRAIFMIPTK----------PPPTFK--KPEE-------WSSEFNDFIRSCLIKKPEERKTALRLCE 282 (502)
T ss_pred CCcccccccceeEeccCC----------CCCCCC--ChHh-------hhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 88765554 23322222 122211 1111 1113678999999999999988776655
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-13 Score=129.91 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=80.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||+||||++ |.
T Consensus 210 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~sDiwslG~il~el~~~g~ 274 (338)
T cd05102 210 NNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESI------FD---------KVYTTQSDVWSFGVLLWEIFSLGA 274 (338)
T ss_pred CCcEEEeecccccccccCcchhcccCCCCCccccCcHHh------hc---------CCCCcccCHHHHHHHHHHHHhCCC
Confidence 4568888 677766543322223346678899999999 33 567899999999999999997 98
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.............+.. .... ........+.+++.+||..+|.+||+..++.+.+..++
T Consensus 275 ~pf~~~~~~~~~~~~~~~~-------~~~~------------~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~ 335 (338)
T cd05102 275 SPYPGVQINEEFCQRLKDG-------TRMR------------APENATPEIYRIMLACWQGDPKERPTFSALVEILGDLL 335 (338)
T ss_pred CCCCCCCccHHHHHHHhcC-------CCCC------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 997643220000000000 0000 00111234778999999999999999999988877765
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-13 Score=135.18 Aligned_cols=110 Identities=24% Similarity=0.315 Sum_probs=78.0
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~ 90 (538)
-||+ |.|...-+.. .+.+-||+|-|.|||++....|+ +.++||||.|||||.||||+ ||+
T Consensus 151 IKIADFGMAsLe~~gk---lLeTSCGSPHYA~PEIV~G~pYd--------------G~~sDVWSCGVILfALLtG~LPFd 213 (786)
T KOG0588|consen 151 IKIADFGMASLEVPGK---LLETSCGSPHYAAPEIVSGRPYD--------------GRPSDVWSCGVILFALLTGKLPFD 213 (786)
T ss_pred EeeeccceeecccCCc---cccccCCCcccCCchhhcCCCCC--------------CCccccchhHHHHHHHHhCCCCCC
Confidence 5888 5554433332 37789999999999999433333 46899999999999999999 999
Q ss_pred hhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
.++...++ ++++.. ...++. . ..++.+++|.++|..||..|.++.++.++
T Consensus 214 DdNir~LL-lKV~~G-----~f~MPs-----------~----Is~eaQdLLr~ml~VDp~~RiT~~eI~kH 263 (786)
T KOG0588|consen 214 DDNIRVLL-LKVQRG-----VFEMPS-----------N----ISSEAQDLLRRMLDVDPSTRITTEEILKH 263 (786)
T ss_pred CccHHHHH-HHHHcC-----cccCCC-----------c----CCHHHHHHHHHHhccCccccccHHHHhhC
Confidence 87666333 111111 111111 1 12237789999999999999999998874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=121.55 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=170.2
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (538)
-..+.++ |.+++.|+..|.|-.+|+.+++....+. -...|.++.|..+. .+++. .....++|||-.. .....++
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~G-tElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNG-TELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcch-HHHHh-hhhceEEEecCCC-cEEeehh
Confidence 4567776 9999999999999999999998888776 34678999998744 34444 4568899998542 2222222
Q ss_pred eecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECC
Q 009274 333 KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLS 410 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 410 (538)
..... .-+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..+.-+ +..+-+|...|+|.+|...
T Consensus 208 ~~~~v------~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 208 RHIRV------ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred hcCch------hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence 22111 112455555688999999999999999999999998888888888877 6688899999999999999
Q ss_pred CCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeecccc-ceEEEEEeCCCEEEEEeCCCeEEEE
Q 009274 411 DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHK-GSVFAVFLEGKWLFTGGWDKTVSVQ 489 (538)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~-~~v~~~~~~~~~l~sgs~dg~v~iw 489 (538)
..+++..+..| .+.+.+ +++.++|+++++.+.|..++|||++...+....+. -+...+++..+-++..|....|.||
T Consensus 282 skePLvKiLcH-~g~V~s-iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 282 SKEPLVKILCH-RGPVSS-IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIW 359 (545)
T ss_pred CcchHHHHHhc-CCCcce-EEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeee
Confidence 99988888776 455555 69999999999999999999999887553333222 3455667766666677777789999
Q ss_pred e
Q 009274 490 E 490 (538)
Q Consensus 490 d 490 (538)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 5
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-13 Score=120.45 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=70.2
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
--|+- |+|++..+. +-++||||.|||||++ + ...++.++|-|||||+.|||+.|. ||
T Consensus 182 ~iKitDFGFAK~v~~r-----T~TlCGTPeYLAPEii------~---------sk~ynkavDWWalGVLIYEMlaG~pPF 241 (355)
T KOG0616|consen 182 HIKITDFGFAKRVSGR-----TWTLCGTPEYLAPEII------Q---------SKGYNKAVDWWALGVLIYEMLAGYPPF 241 (355)
T ss_pred cEEEEeccceEEecCc-----EEEecCCccccChHHh------h---------cCCCCcchhHHHHHHHHHHHHcCCCCC
Confidence 34555 889998877 4479999999999999 3 366888999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
...++..+..-.... ....+.. --+.+.+++.+.|+.|-.+|..
T Consensus 242 ~~~~~~~iY~KI~~~------~v~fP~~---------------fs~~~kdLl~~LL~vD~t~R~g 285 (355)
T KOG0616|consen 242 YDDNPIQIYEKILEG------KVKFPSY---------------FSSDAKDLLKKLLQVDLTKRFG 285 (355)
T ss_pred cCCChHHHHHHHHhC------cccCCcc---------------cCHHHHHHHHHHHhhhhHhhhc
Confidence 987665333000000 0000111 1112667888888888888854
|
|
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-13 Score=128.60 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=71.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... ....+||+.|||||++ .+ ..+++++|||||||+||+|++|+ |
T Consensus 139 ~~~kl~Dfg~~~~~~~~~~---~~~~~g~~~y~aPE~~------~~---------~~~~~~~DvwslGvil~el~~g~~p 200 (285)
T cd05631 139 GHIRISDLGLAVQIPEGET---VRGRVGTVGYMAPEVI------NN---------EKYTFSPDWWGLGCLIYEMIQGQSP 200 (285)
T ss_pred CCEEEeeCCCcEEcCCCCe---ecCCCCCCCccCHhhh------cC---------CCCCcccCchhHHHHHHHHHhCCCC
Confidence 467888 66666543322 3457899999999999 43 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|......... .....................+.+++.+||..+|.+|++.
T Consensus 201 f~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~ 250 (285)
T cd05631 201 FRKRKERVKR-----------------EEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGC 250 (285)
T ss_pred CCCCCcchhH-----------------HHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCC
Confidence 9864322000 0000000000000001112247889999999999999984
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-13 Score=138.07 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=77.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|+. |+++.............++||+.|||||++ .+ ..++.++|||||||+||||++|+
T Consensus 179 ~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~------~~---------~~~s~k~DVwSlGvilyeLltG~~ 243 (496)
T PTZ00283 179 NGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW------RR---------KPYSKKADMFSLGVLLYELLTLKR 243 (496)
T ss_pred CCCEEEEecccCeeccccccccccccccCCcceeCHHHh------CC---------CCCCcHHHHHHHHHHHHHHHHCCC
Confidence 4568888 666665443222224468999999999999 44 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+.... ...... .........+.+++.+||..+|.+||+..++.+
T Consensus 244 Pf~~~~~~~~~~~~---------~~~~~~-----------~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~ 296 (496)
T PTZ00283 244 PFDGENMEEVMHKT---------LAGRYD-----------PLPPSISPEMQEIVTALLSSDPKRRPSSSKLLN 296 (496)
T ss_pred CCCCCCHHHHHHHH---------hcCCCC-----------CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence 99876444111000 000000 000112234788999999999999999887765
|
|
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-13 Score=127.37 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=78.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+...+.........+++.|||||++ .+ ..+++++|||||||+||||++ |.
T Consensus 161 ~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~sDv~slG~il~el~~~g~~ 225 (283)
T cd05048 161 LTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAI------LY---------GKFTTESDIWSFGVVLWEIFSYGLQ 225 (283)
T ss_pred CcEEECCCcceeeccccccccccCCCcccccccCHHHh------cc---------CcCchhhhHHHHHHHHHHHHcCCCC
Confidence 357887 556655433322224457789999999998 32 567899999999999999998 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.+.....+.... ...... . ........+.+++.+|++.+|.+||+..++.+.+..
T Consensus 226 p~~~~~~~~~~~~i---------~~~~~~-------~----~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 226 PYYGFSNQEVIEMI---------RSRQLL-------P----CPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred CCCCCCHHHHHHHH---------HcCCcC-------C----CcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 99875444111000 000000 0 001112347889999999999999999998876643
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-13 Score=129.44 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=87.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+-.||+. |||+..+..+.. ..+...||.+|+|||++ ..+.++.++|||||||+|.||+||+
T Consensus 213 ~~~aKlsDFGLa~~~~~~~~~-~~~~~~gt~gY~~PEy~---------------~~g~lt~KsDVySFGVvllElitgr~ 276 (361)
T KOG1187|consen 213 DFNAKLSDFGLAKLGPEGDTS-VSTTVMGTFGYLAPEYA---------------STGKLTEKSDVYSFGVVLLELITGRK 276 (361)
T ss_pred CCCEEccCccCcccCCccccc-eeeecCCCCccCChhhh---------------ccCCcCcccccccchHHHHHHHhCCc
Confidence 4579998 778555541222 12222999999999999 3378899999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-Cccc------hHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFV------SLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+...+. ...+++.|..+..-.....++.++.+. .... .+..+..+|++.+|..||.+.++.+
T Consensus 277 ~~d~~~~~---------~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~ 347 (361)
T KOG1187|consen 277 AVDQSRPR---------GELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVK 347 (361)
T ss_pred ccCCCCCc---------ccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHH
Confidence 77754322 111233443333223345566665543 2222 2677889999999999999998877
Q ss_pred HHHHh
Q 009274 161 CIREL 165 (538)
Q Consensus 161 ~l~~l 165 (538)
.+..+
T Consensus 348 ~L~~~ 352 (361)
T KOG1187|consen 348 ELEGI 352 (361)
T ss_pred HHHhh
Confidence 66444
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-13 Score=129.77 Aligned_cols=108 Identities=21% Similarity=0.357 Sum_probs=75.9
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchh
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (538)
+....|+..|||||+++. + + ...|+++|||||||+|+|||+||. ||....+..|++.....
T Consensus 547 ~~qp~gsilwmAPEvIRm--q--------d--~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG------ 608 (678)
T KOG0193|consen 547 LEQPHGSLLWMAPEVIRM--Q--------D--DNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRG------ 608 (678)
T ss_pred cCCCccchhhhcHHHHhh--c--------c--cCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEeccc------
Confidence 445789999999999941 1 1 367889999999999999999999 99976666555222111
Q ss_pred hcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
+. .+. ... .+.....++.+++..|+.++++.||...++...+..++.
T Consensus 609 ~l--~pd----~s~----~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~ 655 (678)
T KOG0193|consen 609 YL--MPD----LSK----IRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP 655 (678)
T ss_pred cc--Ccc----chh----hhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence 00 000 100 111122247889999999999999999998887776653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-09 Score=105.28 Aligned_cols=264 Identities=15% Similarity=0.082 Sum_probs=168.0
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeeccc
Q 009274 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (538)
Q Consensus 258 l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (538)
+...++.++.++.+|.+..+|.++|+.+...+.......+.... + ..++.+..++.+.-+|..+++...........
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 44557888888899999999999999998876543222222221 2 34566778899999999887655443321110
Q ss_pred CCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-----------CeEEEEEeCCEEEEEecCCcEEE
Q 009274 338 KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-----------AVSTLAVCNGVLYSGSRDGTIRL 406 (538)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~~~~~l~s~s~dg~i~i 406 (538)
.... ........+..++.++.+|.+..+|..+|+.++....... ...+....++.++.++.+|.+..
T Consensus 193 ~~~~--~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 193 LTLR--GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred cccc--CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 0000 0000111244677788899999999999988776532110 01222334788888889999999
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeeccc--c-ceEEEEEeCCCEEEEEeCC
Q 009274 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTH--K-GSVFAVFLEGKWLFTGGWD 483 (538)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h--~-~~v~~~~~~~~~l~sgs~d 483 (538)
+|..+|+.+.+...... . .....+..++.++.+|.+..+|..+-...++.. . ....+....+..|+.++.|
T Consensus 271 ld~~tG~~~W~~~~~~~---~---~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~ 344 (394)
T PRK11138 271 LDLRSGQIVWKREYGSV---N---DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSE 344 (394)
T ss_pred EECCCCCEEEeecCCCc---c---CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCC
Confidence 99999998776543211 1 111246678888889999999865432222211 1 1112222356778889999
Q ss_pred CeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEc
Q 009274 484 KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 484 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~ 536 (538)
|.+++.|..+++......... ..........+++|++++.||.|+.++.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~----~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDS----SGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCC----CcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 999999999998776554321 1122222345889999999999998864
|
|
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-13 Score=129.66 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=73.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 130 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslGvil~el~tg~~p 192 (312)
T cd05585 130 GHIALCDFGLCKLNMKDDD--KTNTFCGTPEYLAPELL------LG---------HGYTKAVDWWTLGVLLYEMLTGLPP 192 (312)
T ss_pred CcEEEEECcccccCccCCC--ccccccCCcccCCHHHH------cC---------CCCCCccceechhHHHHHHHhCCCC
Confidence 457887 45554332221 24468899999999999 43 55788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
|.......+.... ..... .........+.+++.+||..+|.+||+...+.+.+.
T Consensus 193 f~~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~ 246 (312)
T cd05585 193 FYDENVNEMYRKI---------LQEPL------------RFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKN 246 (312)
T ss_pred cCCCCHHHHHHHH---------HcCCC------------CCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence 9765433111000 00000 000011224778999999999999997655444333
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-13 Score=127.67 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=77.2
Q ss_pred eeeeec--cccccc-----cccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhh
Q 009274 12 SVAKVG--CVGSRI-----CDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLL 84 (538)
Q Consensus 12 ~~~~~~--~~~~~~-----~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~ll 84 (538)
+.+||+ |++-.. .+.+. .+..-+|||+|||||.+-+. ......+.+-|||||||+||.||
T Consensus 247 g~VKIsDFGVs~~~~~~~~~~~d~--~L~~tvGTPAF~APE~c~~~-----------~~~~~~g~a~DiWalGVTLYCll 313 (576)
T KOG0585|consen 247 GTVKISDFGVSNEFPQGSDEGSDD--QLSRTVGTPAFFAPELCSGG-----------NSFSYSGFALDIWALGVTLYCLL 313 (576)
T ss_pred CcEEeeccceeeecccCCccccHH--HHhhcCCCccccchHhhcCC-----------CCccccchhhhhhhhhhhHHHhh
Confidence 678999 555433 22222 36679999999999999221 11345567899999999999999
Q ss_pred hcC-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 85 IGE-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 85 tg~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.|+ ||-++....+. .+. +.. +..+ . .+++ ...+.++|.++|.++|++|....++..
T Consensus 314 fG~~PF~~~~~~~l~~KIv--n~p----L~fP----~--~pe~--------~e~~kDli~~lL~KdP~~Ri~l~~ik~ 371 (576)
T KOG0585|consen 314 FGQLPFFDDFELELFDKIV--NDP----LEFP----E--NPEI--------NEDLKDLIKRLLEKDPEQRITLPDIKL 371 (576)
T ss_pred hccCCcccchHHHHHHHHh--cCc----ccCC----C--cccc--------cHHHHHHHHHHhhcChhheeehhhhee
Confidence 999 99987555333 011 000 0000 0 0111 123788999999999999999887755
|
|
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-13 Score=129.29 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=73.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||++|+|++|.
T Consensus 132 ~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~ 194 (325)
T cd05602 132 QGHIVLTDFGLCKENIEHNG--TTSTFCGTPEYLAPEVL------HK---------QPYDRTVDWWCLGAVLYEMLYGLP 194 (325)
T ss_pred CCCEEEccCCCCcccccCCC--CcccccCCccccCHHHH------cC---------CCCCCccccccccHHHHHHhcCCC
Confidence 4567888 55554332221 14468899999999999 43 56788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
||.......+. . .+...+....+.....+.+++.+||..+|.+|++..+..
T Consensus 195 pf~~~~~~~~~-----------------~----~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~ 245 (325)
T cd05602 195 PFYSRNTAEMY-----------------D----NILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDF 245 (325)
T ss_pred CCCCCCHHHHH-----------------H----HHHhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCH
Confidence 99865433111 0 000000000111223478899999999999999976443
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-13 Score=130.00 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=69.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++...... .....++||+.|||||++ .+ ..++.++|||||||+||||++|+
T Consensus 131 ~~~~kl~DfG~a~~~~~~~--~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltg~~ 193 (323)
T cd05571 131 DGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRL 193 (323)
T ss_pred CCCEEEeeCCCCcccccCC--CcccceecCccccChhhh------cC---------CCCCccccCcccchhhhhhhcCCC
Confidence 3467888 5555432221 124568999999999998 43 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||.......+.... ...... . .......+.+++.+||..+|.+||+
T Consensus 194 Pf~~~~~~~~~~~~---------~~~~~~-----~-------p~~~~~~~~~li~~~L~~dP~~R~~ 239 (323)
T cd05571 194 PFYNQDHEKLFELI---------LMEEIR-----F-------PRTLSPEAKSLLAGLLKKDPKQRLG 239 (323)
T ss_pred CCCCCCHHHHHHHH---------HcCCCC-----C-------CCCCCHHHHHHHHHHccCCHHHcCC
Confidence 99765433211000 000000 0 0011224778999999999999994
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-13 Score=119.95 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=80.7
Q ss_pred cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhh
Q 009274 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (538)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~ 96 (538)
|+|-++++.++ ++++||||+|+|||.+.=.++. ..-.|+...|+|++||++|.||.|- ||-..-+.+
T Consensus 168 GFa~~l~~Gek---LrelCGTPgYLAPEtikC~m~e---------~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQml 235 (411)
T KOG0599|consen 168 GFACQLEPGEK---LRELCGTPGYLAPETIKCSMYE---------NHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQML 235 (411)
T ss_pred ceeeccCCchh---HHHhcCCCcccChhheeeeccc---------CCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 89999999987 8999999999999998333322 2345677899999999999999999 998764443
Q ss_pred eeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
++...-+.+ +....+.|.. + ..+..+++.++|..+|.+|.++.+...
T Consensus 236 MLR~ImeGk-----yqF~speWad----i--------s~~~KdLIsrlLqVdp~~Ritake~La 282 (411)
T KOG0599|consen 236 MLRMIMEGK-----YQFRSPEWAD----I--------SATVKDLISRLLQVDPTKRITAKEALA 282 (411)
T ss_pred HHHHHHhcc-----cccCCcchhh----c--------cccHHHHHHHHHeeCchhcccHHHHhc
Confidence 331110000 1222222222 2 223677999999999999999876554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-10 Score=108.14 Aligned_cols=270 Identities=15% Similarity=0.197 Sum_probs=171.5
Q ss_pred cCCCcEEEEEEc--CCE-EEEEeCCCcEEEEeCCCCceEEEEecCC-cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 250 GHRDCVTGLAVG--GGF-LFSSSFDKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
+|...-+.|..+ |+| ++||.+.-.|++||+.+... .|.-|. ..+..+....++-.-++--..|.+|-+-.-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G- 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG- 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcC-
Confidence 366667778887 665 56777889999999976433 333342 33333333333332334444555555432110
Q ss_pred CCCcceeeecccCCceeeeEEEEe-ecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCC
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALT-TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG 402 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg 402 (538)
....++..... .-++++ |+.. |+.++....|+-+++..|+-+..+....+.++++..+ .++|++|+.||
T Consensus 126 -~hy~~RIP~~G------RDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 126 -RHYRTRIPKFG------RDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred -eeeeeecCcCC------ccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc
Confidence 00001100000 011222 2333 4444455679999999999999998888999999998 77999999999
Q ss_pred cEEEEECCCCceeEEEecCCC---------CceEEEEEEcCCCCEEEEEeCCCcEEEEeCCccee-eecc--ccceEEEE
Q 009274 403 TIRLWSLSDHSLLTVLEEDSS---------GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK-SMQT--HKGSVFAV 470 (538)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~--h~~~v~~~ 470 (538)
.+..||.++...+.++..... ....+.+.|+.+|-.+++|+.+|.+.|||++...- ..+. ..-+|..+
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 999999999887776654322 12234478999999999999999999999764222 2233 34577788
Q ss_pred Ee----CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEEECCCeEEEEEc
Q 009274 471 FL----EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 471 ~~----~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~v~vw~~ 536 (538)
.| +++.++|. ....++|||-.+++......+...+ ...+.++ .|.+++|-.++.+..|-+
T Consensus 278 ~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~l-----ND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDL-----NDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred cccccCCCceEEec-chHHhhhcccccCCceeeccccCCc-----CceeeecCCceEEEecCCCcceeEEc
Confidence 87 23455554 4568999999999876665554332 2233444 667888888887766543
|
|
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-13 Score=128.82 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=72.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|.
T Consensus 132 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~ell~g~~ 194 (323)
T cd05575 132 QGHVVLTDFGLCKEGIEHSK--TTSTFCGTPEYLAPEVL------RK---------QPYDRTVDWWCLGAVLYEMLYGLP 194 (323)
T ss_pred CCcEEEeccCCCcccccCCC--ccccccCChhhcChhhh------cC---------CCCCccccccccchhhhhhhcCCC
Confidence 3467888 55554322221 24568899999999998 43 56788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
||.......+.. .+........+.....+.+++.+||+.+|.+||++...
T Consensus 195 pf~~~~~~~~~~---------------------~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~ 244 (323)
T cd05575 195 PFYSRDTAEMYD---------------------NILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAKDD 244 (323)
T ss_pred CCCCCCHHHHHH---------------------HHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCC
Confidence 998754431110 00000000001112247789999999999999997643
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-13 Score=142.34 Aligned_cols=120 Identities=18% Similarity=0.305 Sum_probs=77.2
Q ss_pred eeeeeeeccc--cccccc--cchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 10 TKSVAKVGCV--GSRICD--KEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 10 ~~~~~~~~~~--~~~~~~--~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
-+|+-|.+.+ |..+.+ .+++-.+.+++|||.|||||++ -|. .. ..-+-+.||||||||+.||.|
T Consensus 1369 ~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvi------t~t---~~---kG~~~A~DiWslGCVVlEM~t 1436 (1509)
T KOG4645|consen 1369 FNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVI------TGT---KG---KGHGGAADIWSLGCVVLEMAT 1436 (1509)
T ss_pred cCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhh------ccc---cc---CCCCcchhhhcccceEEEeec
Confidence 3678888844 444332 2344557889999999999999 331 11 223458999999999999999
Q ss_pred cC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|+ |+...+-. ..-++..-.+..|++|.. --..-.+.+.+||..||.+|..+.++.+
T Consensus 1437 GkrPW~~~dne---------------~aIMy~V~~gh~Pq~P~~----ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1437 GKRPWAELDNE---------------WAIMYHVAAGHKPQIPER----LSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred CCCchhhccch---------------hHHHhHHhccCCCCCchh----hhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence 99 99875333 111122222222332222 1123567999999999999966655443
|
|
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-13 Score=129.79 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=80.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+.............|++.|||||++ .+ ..++.++|||||||+||+|++ |.
T Consensus 210 ~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~SlGv~l~el~t~g~~ 274 (337)
T cd05054 210 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESI------FD---------KVYTTQSDVWSFGVLLWEIFSLGAS 274 (337)
T ss_pred CcEEEeccccchhcccCcchhhccCCCCCccccCcHHh------cC---------CCCCccccHHHHHHHHHHHHHcCCC
Confidence 457888 566766443322223356778899999998 33 567899999999999999998 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
||.+....... .. ...... ..........++.+++.+||+.+|.+||+..++.+.+.+++.
T Consensus 275 p~~~~~~~~~~-------------~~---~~~~~~---~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~ 335 (337)
T cd05054 275 PYPGVQIDEEF-------------CR---RLKEGT---RMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ 335 (337)
T ss_pred CCCCCCccHHH-------------HH---HHhccC---CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 99753221000 00 000000 000001122347789999999999999999999998887764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-13 Score=134.97 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+.+..........+||+.|||||++ .+ ..++.++|||||||++|+|++|+
T Consensus 205 ~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Dv~slG~~l~el~tg~~ 269 (478)
T PTZ00267 205 TGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELW------ER---------KRYSKKADMWSLGVILYELLTLHR 269 (478)
T ss_pred CCcEEEEeCcCceecCCccccccccccCCCccccCHhHh------CC---------CCCCcHHhHHHHHHHHHHHHhCCC
Confidence 4567887 677776544322234568899999999998 33 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.......+.... ...... .........+.+++.+||..+|.+||++.++..
T Consensus 270 Pf~~~~~~~~~~~~---------~~~~~~-----------~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 270 PFKGPSQREIMQQV---------LYGKYD-----------PFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred CCCCCCHHHHHHHH---------HhCCCC-----------CCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence 99865443111000 000000 000011124788999999999999999877653
|
|
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-13 Score=127.92 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=70.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... ....++||+.|||||++ .+ ..++.++|||||||++|+|+||+ |
T Consensus 138 ~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvil~elltg~~P 200 (323)
T cd05616 138 GHIKIADFGMCKENMWDGV--TTKTFCGTPDYIAPEII------AY---------QPYGKSVDWWAFGVLLYEMLAGQAP 200 (323)
T ss_pred CcEEEccCCCceecCCCCC--ccccCCCChhhcCHHHh------cC---------CCCCCccchhchhHHHHHHHhCCCC
Confidence 457888 55554332211 24468899999999999 43 56789999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|.+.....+. .+. ..... .+ .....++.+++.+||..+|.+|++.
T Consensus 201 f~~~~~~~~~~~i~----------~~~~~--------~p----~~~s~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 201 FEGEDEDELFQSIM----------EHNVA--------YP----KSMSKEAVAICKGLMTKHPGKRLGC 246 (323)
T ss_pred CCCCCHHHHHHHHH----------hCCCC--------CC----CcCCHHHHHHHHHHcccCHHhcCCC
Confidence 9876444211 000 00000 00 0111236789999999999999985
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.9e-13 Score=128.35 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=70.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++...+.. ....||+.|||||++ .+ ..++.++|||||||+||+|++|+
T Consensus 154 ~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~ 213 (329)
T PTZ00263 154 KGHVKVTDFGFAKKVPDRT-----FTLCGTPEYLAPEVI------QS---------KGHGKAVDWWTMGVLLYEFIAGYP 213 (329)
T ss_pred CCCEEEeeccCceEcCCCc-----ceecCChhhcCHHHH------cC---------CCCCCcceeechHHHHHHHHcCCC
Confidence 4567888 6677665442 257899999999999 43 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC-ccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.......+.. ....... ..+. ....+.+++.+||..+|.+|++.
T Consensus 214 pf~~~~~~~~~~-----------------~i~~~~~-----~~p~~~~~~~~~li~~~L~~dP~~R~~~ 260 (329)
T PTZ00263 214 PFFDDTPFRIYE-----------------KILAGRL-----KFPNWFDGRARDLVKGLLQTDHTKRLGT 260 (329)
T ss_pred CCCCCCHHHHHH-----------------HHhcCCc-----CCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 997654431110 0000000 0000 11236789999999999999974
|
|
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-12 Score=125.13 Aligned_cols=119 Identities=15% Similarity=0.237 Sum_probs=79.3
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+.+ +++...............|++.|||||++ .+ ..++.++|||||||++|+|+| |.
T Consensus 160 ~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~t~g~~ 224 (291)
T cd05094 160 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI------MY---------RKFTTESDVWSFGVILWEIFTYGKQ 224 (291)
T ss_pred CcEEECCCCcccccCCCceeecCCCCCcceeecChHHh------cc---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 4678884 55554433322223456789999999998 33 557789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||......... .+. . .... .........+.+++.+||..+|.+||++.++.+.+.++.
T Consensus 225 p~~~~~~~~~~~~~~---~-------~~~~-----------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~ 283 (291)
T cd05094 225 PWFQLSNTEVIECIT---Q-------GRVL-----------ERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALG 283 (291)
T ss_pred CCCCCCHHHHHHHHh---C-------CCCC-----------CCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence 98765333111 000 0 0000 000011224788999999999999999999999888774
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-12 Score=124.10 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=75.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
.-+|+. |+++.+.............+++.|||||++ .+ +.++.++|||||||++|||++ |.
T Consensus 161 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~~l~el~~~g~~ 225 (283)
T cd05091 161 LNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAI------MY---------GKFSIDSDIWSYGVVLWEVFSYGLQ 225 (283)
T ss_pred CceEecccccccccccchheeeccCccCCccccCHHHH------hc---------CCCCcchhHHHHHHHHHHHHcCCCC
Confidence 346888 555655433322223456778999999998 32 557789999999999999998 77
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC-ccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.+.....+.. .+........+. ....+.+++.+|++.+|.+||+..++...++
T Consensus 226 p~~~~~~~~~~~---------------------~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~ 281 (283)
T cd05091 226 PYCGYSNQDVIE---------------------MIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLR 281 (283)
T ss_pred CCCCCCHHHHHH---------------------HHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence 887654331110 000000000011 1223778999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=127.33 Aligned_cols=120 Identities=16% Similarity=0.215 Sum_probs=78.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+.......+.....+++.|||||++ .+ ..++.++|||||||+||+|++ |+
T Consensus 249 ~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwSlGvil~ellt~G~~ 313 (374)
T cd05106 249 RVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESI------FD---------CVYTVQSDVWSYGILLWEIFSLGKS 313 (374)
T ss_pred CeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHh------cC---------CCCCccccHHHHHHHHHHHHhCCCC
Confidence 468888 566655433221112234567889999998 32 567899999999999999997 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||......... .. .... ...... .....++.+++.+||+.+|.+||+..++.+.+.++.
T Consensus 314 Pf~~~~~~~~~-------------~~---~~~~----~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~ 373 (374)
T cd05106 314 PYPGILVNSKF-------------YK---MVKR----GYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL 373 (374)
T ss_pred CCccccccHHH-------------HH---HHHc----ccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence 99764322000 00 0000 000000 011235788999999999999999999999887754
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=127.30 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=71.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.....+. .....+||+.|||||++ .+ ..++.++|||||||+||+|++|.
T Consensus 132 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~ 194 (321)
T cd05603 132 QGHVVLTDFGLCKEGVEPEE--TTSTFCGTPEYLAPEVL------RK---------EPYDRTVDWWCLGAVLYEMLYGLP 194 (321)
T ss_pred CCCEEEccCCCCccCCCCCC--ccccccCCcccCCHHHh------cC---------CCCCCcCcccccchhhhhhhcCCC
Confidence 4568888 45554322221 14468899999999998 33 55788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
||...+...+. ..+...+..........+.+++.+||..+|.+|++..
T Consensus 195 pf~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 195 PFYSRDVSQMY---------------------DNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred CCCCCCHHHHH---------------------HHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence 99875433111 0000000000011222477899999999999999865
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-13 Score=125.92 Aligned_cols=66 Identities=27% Similarity=0.470 Sum_probs=50.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+...... ......||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 137 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwslGvil~el~~g~~p 200 (287)
T cd07848 137 DVLKLCDFGFARNLSEGSNA-NYTEYVATRWYRSPELL------LG---------APYGKAVDMWSVGCILGELSDGQPL 200 (287)
T ss_pred CcEEEeeccCcccccccccc-cccccccccccCCcHHH------cC---------CCCCCchhHHhHHHHHHHHHhCCCC
Confidence 467888 566665433221 13457899999999999 33 45778999999999999999999 9
Q ss_pred cchhh
Q 009274 89 FTKEL 93 (538)
Q Consensus 89 f~~~~ 93 (538)
|.+..
T Consensus 201 f~~~~ 205 (287)
T cd07848 201 FPGES 205 (287)
T ss_pred CCCCC
Confidence 98643
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-12 Score=127.22 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=71.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 133 ~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~P 195 (320)
T cd05590 133 GHCKLADFGMCKEGIFNGK--TTSTFCGTPDYIAPEIL------QE---------MLYGPSVDWWAMGVLLYEMLCGHAP 195 (320)
T ss_pred CcEEEeeCCCCeecCcCCC--cccccccCccccCHHHH------cC---------CCCCCccchhhhHHHHHHHhhCCCC
Confidence 467888 45554322211 24568899999999999 33 56778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
|.......+.... ...... ........+.+++.+||..+|.+|+++.+
T Consensus 196 f~~~~~~~~~~~i---------~~~~~~------------~~~~~~~~~~~li~~~L~~dP~~R~~~~~ 243 (320)
T cd05590 196 FEAENEDDLFEAI---------LNDEVV------------YPTWLSQDAVDILKAFMTKNPTMRLGSLT 243 (320)
T ss_pred CCCCCHHHHHHHH---------hcCCCC------------CCCCCCHHHHHHHHHHcccCHHHCCCCCC
Confidence 9876444211000 000000 00011223778999999999999999854
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-12 Score=126.04 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=70.2
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+.+ +++....... ....++||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 133 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~el~~g~~P 195 (316)
T cd05620 133 GHIKIADFGMCKENVFGDN--RASTFCGTPDYIAPEIL------QG---------LKYTFSVDWWSFGVLLYEMLIGQSP 195 (316)
T ss_pred CCEEeCccCCCeecccCCC--ceeccCCCcCccCHHHH------cC---------CCCCcccchhhhHHHHHHHHhCCCC
Confidence 4678884 4443221111 14468899999999999 43 56788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.......+. . ......+..+ ......+.+++.+||..+|.+|++..
T Consensus 196 f~~~~~~~~~--------------~---~~~~~~~~~~----~~~~~~~~~li~~~l~~dP~~R~~~~ 242 (316)
T cd05620 196 FHGDDEDELF--------------E---SIRVDTPHYP----RWITKESKDILEKLFERDPTRRLGVV 242 (316)
T ss_pred CCCCCHHHHH--------------H---HHHhCCCCCC----CCCCHHHHHHHHHHccCCHHHcCCCh
Confidence 9865443111 0 0000000000 01122477899999999999999874
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=125.04 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=68.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...+. ....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 138 ~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~~l~~g~~p 197 (291)
T cd05612 138 GHIKLTDFGFAKKLRDR-----TWTLCGTPEYLAPEVI------QS---------KGHNKAVDWWALGILIYEMLVGYPP 197 (291)
T ss_pred CCEEEEecCcchhccCC-----cccccCChhhcCHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 456787 566665443 2357899999999998 43 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|.......+.... ..... ..+ .....+.+++.+||..+|.+|++
T Consensus 198 f~~~~~~~~~~~i---------~~~~~-------------~~~~~~~~~~~~li~~~l~~dp~~R~~ 242 (291)
T cd05612 198 FFDDNPFGIYEKI---------LAGKL-------------EFPRHLDLYAKDLIKKLLVVDRTRRLG 242 (291)
T ss_pred CCCCCHHHHHHHH---------HhCCc-------------CCCccCCHHHHHHHHHHcCCCHHHccC
Confidence 9875443111000 00000 000 01224778999999999999997
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-12 Score=127.20 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=69.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.....+... ...++||+.|||||++ .+ ...++.++|||||||+||+|+||. |
T Consensus 142 ~~~kl~DfG~~~~~~~~~~~~-~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~elltg~~p 206 (332)
T cd05614 142 GHVVLTDFGLSKEFLSEEKER-TYSFCGTIEYMAPEII------RG--------KGGHGKAVDWWSLGILIFELLTGASP 206 (332)
T ss_pred CCEEEeeCcCCccccccCCCc-cccccCCccccCHHHh------cC--------CCCCCCccccccchhhhhhhhcCCCC
Confidence 467888 5666554333221 3358899999999998 33 133678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|......... .....................+.+++.+||..+|.+||++.
T Consensus 207 f~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~ 257 (332)
T cd05614 207 FTLEGERNTQ-----------------SEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAG 257 (332)
T ss_pred CCCCCCCCCH-----------------HHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCC
Confidence 9753221000 00000000000000011122477899999999999999654
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=114.88 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=115.2
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee--cCCEEEEeeCCC
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDR 362 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg 362 (538)
.+.+.+|++.|+++.|+. ++.+|++|+.|-.+.|||.-..+....+. ..+...+.++ .|-| +.+.+++|..|.
T Consensus 43 E~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~---TgHtaNIFsv-KFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIS---TGHTANIFSV-KFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeee---cccccceeEE-eeeccCCCeEEEeccCcc
Confidence 456789999999999987 45588999999999999987443333332 2222222222 3334 344899999999
Q ss_pred cEEEEECCCC----------ceeEEecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCcee-------EEEec-C
Q 009274 363 TIKAWSLLDG----------TLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLL-------TVLEE-D 421 (538)
Q Consensus 363 ~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~-~ 421 (538)
.|+++|+... +....+..|...|..++.. ++.+.+++.||+|+-+|++....- ..+.. .
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999742 3344556788899888887 469999999999999999863211 11100 0
Q ss_pred CCCceEEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 009274 422 SSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 422 ~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 454 (538)
..-....++.++|. ..+|++|+.|-..++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 01112334677775 5689999999999999943
|
|
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.30 E-value=9e-13 Score=128.20 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=69.3
Q ss_pred eeeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+.+ +++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|+||+
T Consensus 132 ~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~tG~~ 194 (325)
T cd05594 132 DGHIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRL 194 (325)
T ss_pred CCCEEEecCCCCeecCCCCc--ccccccCCcccCCHHHH------cc---------CCCCCccccccccceeeeeccCCC
Confidence 34688884 4444322211 24567899999999999 44 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||.......+.... ...... ........+.+++.+||..+|.+|+.
T Consensus 195 Pf~~~~~~~~~~~i---------~~~~~~------------~p~~~~~~~~~li~~~L~~dP~~R~~ 240 (325)
T cd05594 195 PFYNQDHEKLFELI---------LMEEIR------------FPRTLSPEAKSLLSGLLKKDPKQRLG 240 (325)
T ss_pred CCCCCCHHHHHHHH---------hcCCCC------------CCCCCCHHHHHHHHHHhhcCHHHhCC
Confidence 99765433111000 000000 00011234778999999999999973
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-12 Score=127.20 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=69.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|+
T Consensus 131 ~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~elltG~~ 193 (328)
T cd05593 131 DGHIKITDFGLCKEGITDAA--TMKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRL 193 (328)
T ss_pred CCcEEEecCcCCccCCCccc--ccccccCCcCccChhhh------cC---------CCCCccCCccccchHHHHHhhCCC
Confidence 3467888 55554332221 14468899999999998 43 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||.......+.... ...... .+ ......+.+++.+||..+|.+|+.
T Consensus 194 Pf~~~~~~~~~~~~---------~~~~~~-----~p-------~~~~~~~~~li~~~L~~dP~~R~~ 239 (328)
T cd05593 194 PFYNQDHEKLFELI---------LMEDIK-----FP-------RTLSADAKSLLSGLLIKDPNKRLG 239 (328)
T ss_pred CCCCCCHHHHHHHh---------ccCCcc-----CC-------CCCCHHHHHHHHHHcCCCHHHcCC
Confidence 99765433111000 000000 00 011123778999999999999984
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-12 Score=126.70 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=69.5
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.++ ++....... ....++||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 138 ~~~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~G~~p 200 (324)
T cd05589 138 GFVKIADFGLCKEGMGFGD--RTSTFCGTPEFLAPEVL------TE---------TSYTRAVDWWGLGVLIYEMLVGESP 200 (324)
T ss_pred CcEEeCcccCCccCCCCCC--cccccccCccccCHhHh------cC---------CCCCcccchhhHHHHHHHHHhCCCC
Confidence 45788844 443322211 14468999999999998 43 55778999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.+.....+. .+. ..... ........+.+++.+||..+|.+||+..
T Consensus 201 f~~~~~~~~~~~i~----------~~~~~------------~p~~~~~~~~~li~~~L~~dP~~R~~~~ 247 (324)
T cd05589 201 FPGDDEEEVFDSIV----------NDEVR------------YPRFLSREAISIMRRLLRRNPERRLGSG 247 (324)
T ss_pred CCCCCHHHHHHHHH----------hCCCC------------CCCCCCHHHHHHHHHHhhcCHhHcCCCC
Confidence 9875443111 000 00000 0001112367899999999999999754
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-12 Score=125.14 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=74.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...... ......||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 147 ~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~~ 208 (290)
T cd07862 147 GQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVL------LQ---------SSYATPVDLWSVGCIFAEMFRRKPL 208 (290)
T ss_pred CCEEEccccceEeccCCc---ccccccccccccChHHH------hC---------CCCCCccchHHHHHHHHHHHcCCCC
Confidence 457888 5565554332 24468899999999998 33 45778999999999999999999 9
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHH-----------HHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKV-----------TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.+.... .+..+.. .. ....+..+.... ...+....+.....+.+++.+||+.+|++||++.
T Consensus 209 f~~~~~~~~~~~i~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~ 282 (290)
T cd07862 209 FRGSSDVDQLGKILD--VI----GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY 282 (290)
T ss_pred cCCCCHHHHHHHHHH--Hh----CCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHH
Confidence 9865332 1110000 00 000000000000 0000000011223467899999999999999988
Q ss_pred hHHH
Q 009274 157 NVWK 160 (538)
Q Consensus 157 ~~~~ 160 (538)
++.+
T Consensus 283 ~~l~ 286 (290)
T cd07862 283 SALS 286 (290)
T ss_pred HHhc
Confidence 7654
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-12 Score=123.49 Aligned_cols=120 Identities=13% Similarity=0.237 Sum_probs=78.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++..|+. |+++.+.............|++.|||||++ .+ ..++.++|||||||++|+|+| |.
T Consensus 156 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~sDiwslG~il~~l~t~g~ 220 (288)
T cd05093 156 NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI------MY---------RKFTTESDVWSLGVVLWEIFTYGK 220 (288)
T ss_pred CCcEEeccCCccccccCCceeecCCCCCccccccCHHHh------cc---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 3457887 555555433322223345678999999998 33 457789999999999999999 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+. .. . .+ .........+.+++.+||+.+|.+||+..++...+..+
T Consensus 221 ~p~~~~~~~~~~~~i~--~~-------~--------~~----~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~ 279 (288)
T cd05093 221 QPWYQLSNNEVIECIT--QG-------R--------VL----QRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNL 279 (288)
T ss_pred CCCCCCCHHHHHHHHH--cC-------C--------cC----CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 98765333111 000 00 0 00 00011223588899999999999999999988877766
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 280 ~ 280 (288)
T cd05093 280 A 280 (288)
T ss_pred H
Confidence 4
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=125.74 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=70.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 133 ~~~kL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~ell~G~~P 195 (316)
T cd05592 133 GHIKIADFGMCKENMNGEG--KASTFCGTPDYIAPEIL------KG---------QKYNESVDWWSFGVLLYEMLIGQSP 195 (316)
T ss_pred CCEEEccCcCCeECCCCCC--ccccccCCccccCHHHH------cC---------CCCCCcccchhHHHHHHHHHhCCCC
Confidence 456887 55654432221 14468899999999999 44 45788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.+.....+.. ......+.. .......+.+++.+||..+|.+||+..
T Consensus 196 f~~~~~~~~~~-----------------~i~~~~~~~----~~~~~~~~~~ll~~~l~~~P~~R~~~~ 242 (316)
T cd05592 196 FHGEDEDELFD-----------------SILNDRPHF----PRWISKEAKDCLSKLFERDPTKRLGVD 242 (316)
T ss_pred CCCCCHHHHHH-----------------HHHcCCCCC----CCCCCHHHHHHHHHHccCCHHHcCCCh
Confidence 98754431110 000000000 001112367899999999999999864
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-10 Score=108.59 Aligned_cols=200 Identities=14% Similarity=0.207 Sum_probs=146.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecC---CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccC
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGH---DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEK 338 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 338 (538)
..++|....||.+|+||...++....|... ++...+..| .+.-............
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w--------------------~L~~~~s~~k~~~~~~-- 62 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW--------------------GLSADYSPMKWLSLEK-- 62 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE--------------------EEEeccchHHHHhHHH--
Confidence 568999999999999999988877766421 233333333 3221111111111000
Q ss_pred CceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCce
Q 009274 339 DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSL 414 (538)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~ 414 (538)
....+.+-..++-|...|.|.+|++..++....+. .|.+.|+++.++ -+.|.+++.|+.+..|+....+.
T Consensus 63 ------~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 63 ------AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred ------HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 11223334488899999999999999999888874 689999999998 44999999999999999999999
Q ss_pred eEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEe--C-----CCEEEE-EeCCC
Q 009274 415 LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--E-----GKWLFT-GGWDK 484 (538)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~-----~~~l~s-gs~dg 484 (538)
.+.+....... ..++++||+..+++++. .|++||. .+.+..+.+|.++|.+++| + |.++.+ ...+.
T Consensus 137 ~~~~~~~~~~~--~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 137 IRIWKEQKPLV--SSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeeccCCCcc--ceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 98888764433 33799999999998875 7999995 4678999999999999988 3 455554 44566
Q ss_pred eEEEEecCC
Q 009274 485 TVSVQELAG 493 (538)
Q Consensus 485 ~v~iwd~~~ 493 (538)
.+.+|-+..
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 788887765
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=137.97 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=74.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
.++|+. |+++.+..... ....+||+.|||||++ .+ ....+++++||||||||||+|+||. |
T Consensus 179 ~iVKLsDFGlAr~l~~~s~---~~s~vGTp~YmAPEvL------~g-------e~~~~s~KSDVWSLG~ILYELLTGk~P 242 (1021)
T PTZ00266 179 PIAKIGDFGLSKNIGIESM---AHSCVGTPYYWSPELL------LH-------ETKSYDDKSDMWALGCIIYELCSGKTP 242 (1021)
T ss_pred CceEEccCCcccccccccc---ccccCCCccccCHHHH------hc-------cCCCCCchhHHHHHHHHHHHHHHCCCC
Confidence 357888 56666543322 3467899999999998 32 1234778999999999999999999 9
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|...... .+. ..+...+..........+.+++.+||..+|.+||++.++..
T Consensus 243 F~~~~~~~qli---------------------~~lk~~p~lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~ 294 (1021)
T PTZ00266 243 FHKANNFSQLI---------------------SELKRGPDLPIKGKSKELNILIKNLLNLSAKERPSALQCLG 294 (1021)
T ss_pred CCcCCcHHHHH---------------------HHHhcCCCCCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence 9753221 000 00000000011112234888999999999999999887764
|
|
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-12 Score=121.93 Aligned_cols=122 Identities=12% Similarity=0.182 Sum_probs=82.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++...+.......+...|++.|||||++ .+ +.+++++|||||||++|||++ |.
T Consensus 146 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~------~~---------~~~~~~~Dv~slG~il~el~t~g~~ 210 (279)
T cd05111 146 SIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESI------LF---------GRYTHQSDVWSYGVTVWEMMSYGAE 210 (279)
T ss_pred CcEEEcCCccceeccCCCcccccCCCCCcccccCHHHh------cc---------CCcCchhhHHHHHHHHHHHHcCCCC
Confidence 457887 667766554443334457788999999998 33 567899999999999999998 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
||.+..+..+..+..+.. .+. ........+.+++.+|+..+|.+||+..++.+.+..+..
T Consensus 211 p~~~~~~~~~~~~~~~~~--------~~~------------~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~ 270 (279)
T cd05111 211 PYAGMRPHEVPDLLEKGE--------RLA------------QPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR 270 (279)
T ss_pred CCCCCCHHHHHHHHHCCC--------cCC------------CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence 997754431110000000 000 000112246678899999999999999999888777654
Q ss_pred C
Q 009274 168 K 168 (538)
Q Consensus 168 ~ 168 (538)
.
T Consensus 271 ~ 271 (279)
T cd05111 271 D 271 (279)
T ss_pred C
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-12 Score=126.89 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=69.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+... ..+.+||+.|||||++ .+ ..++.++|||||||+||+|++|.
T Consensus 167 ~~~ikL~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvil~ell~G~~ 226 (340)
T PTZ00426 167 DGFIKMTDFGFAKVVDTR-----TYTLCGTPEYIAPEIL------LN---------VGHGKAADWWTLGIFIYEILVGCP 226 (340)
T ss_pred CCCEEEecCCCCeecCCC-----cceecCChhhcCHHHH------hC---------CCCCccccccchhhHHHHHhcCCC
Confidence 3567887 666665433 2357899999999999 33 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||...++..+...... . ....+. .....+.+++.+||..+|.+|+.
T Consensus 227 Pf~~~~~~~~~~~i~~-~-----~~~~p~---------------~~~~~~~~li~~~l~~dp~~R~~ 272 (340)
T PTZ00426 227 PFYANEPLLIYQKILE-G-----IIYFPK---------------FLDNNCKHLMKKLLSHDLTKRYG 272 (340)
T ss_pred CCCCCCHHHHHHHHhc-C-----CCCCCC---------------CCCHHHHHHHHHHcccCHHHcCC
Confidence 9987654421100000 0 000000 01123678999999999999975
|
|
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-12 Score=126.76 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=71.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++........ ...++||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 135 ~~~kL~Dfg~~~~~~~~~~~--~~~~~g~~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~tg~~p 197 (318)
T cd05582 135 GHIKLTDFGLSKESIDHEKK--AYSFCGTVEYMAPEVV------NR---------RGHTQSADWWSFGVLMFEMLTGSLP 197 (318)
T ss_pred CcEEEeeccCCcccCCCCCc--eecccCChhhcCHHHH------cC---------CCCCCccceeccceEeeeeccCCCC
Confidence 457887 556555433221 3468899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
|.......+.....+. ... .+ ......+.+++.+||..+|.+||++.+
T Consensus 198 ~~~~~~~~~~~~i~~~------~~~--------~p-------~~~~~~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 198 FQGKDRKETMTMILKA------KLG--------MP-------QFLSPEAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred CCCCCHHHHHHHHHcC------CCC--------CC-------CCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 9875433111000000 000 00 011123678999999999999999765
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-12 Score=126.69 Aligned_cols=115 Identities=24% Similarity=0.254 Sum_probs=81.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.=|++ |+|...++... +++++|||.|||||++ .+ ..|+..+|+||+||++|.||+|.
T Consensus 175 ~~~ik~~DFGla~~~~~~~~---~~~~~Gtp~y~APEvl------~~---------~~y~~~~DiWS~Gvi~yiLL~G~~ 236 (382)
T KOG0032|consen 175 SGRIKLIDFGLAKFIKPGER---LHTIVGTPEYVAPEVL------GG---------RPYGDEVDVWSIGVILYILLSGVP 236 (382)
T ss_pred CCcEEEeeCCCceEccCCce---EeeecCCccccCchhh------cC---------CCCCcccchhHHHHHHHHHhhCCC
Confidence 3456677 88988887332 8899999999999999 33 67889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+.... ....+ ......+........+.+.++|.++|..|+++.++.+
T Consensus 237 PF~~~~~~~~~~~i---------~~~~~--------~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~ 292 (382)
T KOG0032|consen 237 PFWGETEFEIFLAI---------LRGDF--------DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ 292 (382)
T ss_pred CCcCCChhHHHHHH---------HcCCC--------CCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence 99997655222000 00000 1111111112223778999999999999999877665
|
|
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-12 Score=122.62 Aligned_cols=116 Identities=15% Similarity=0.223 Sum_probs=74.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+.............+++.|||||++ .+ ..+++++|||||||++|+|++ |.
T Consensus 159 ~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~e~~~~g~~ 223 (280)
T cd05049 159 LVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI------MY---------RKFTTESDVWSFGVVLWEIFTYGKQ 223 (280)
T ss_pred CeEEECCcccceecccCcceecCCCCcccceecChhhh------cc---------CCcchhhhHHHHHHHHHHHHhcCCC
Confidence 456777 455544322211112345678999999998 43 567899999999999999999 99
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||......... .+. . + . ...........+.+++.+||..+|++||+..++.+.+.
T Consensus 224 p~~~~~~~~~~~~~~---~--------------~-~---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 224 PWYGLSNEEVIECIT---Q--------------G-R---LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred CCCCCCHHHHHHHHH---c--------------C-C---cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 98764333111 000 0 0 0 00000112234788999999999999999988877553
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-12 Score=125.64 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=71.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++........ ....+||+.|||||++ .+ ..++.++|||||||+||+|++|. |
T Consensus 133 ~~~kL~DfG~~~~~~~~~~~--~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~el~~G~~p 195 (325)
T cd05604 133 GHVVLTDFGLCKEGIAQSDT--TTTFCGTPEYLAPEVI------RK---------QPYDNTVDWWCLGAVLYEMLYGLPP 195 (325)
T ss_pred CCEEEeecCCcccCCCCCCC--cccccCChhhCCHHHH------cC---------CCCCCcCccccccceehhhhcCCCC
Confidence 457787 555543222211 3468899999999999 43 56778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
|.......+. .. .........+.....+.+++.+||..+|.+||....
T Consensus 196 f~~~~~~~~~-----------------~~----~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~ 243 (325)
T cd05604 196 FYCRDVAEMY-----------------DN----ILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKE 243 (325)
T ss_pred CCCCCHHHHH-----------------HH----HHcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCCC
Confidence 9875443111 00 000000001112234678999999999999998754
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-09 Score=95.36 Aligned_cols=185 Identities=17% Similarity=0.181 Sum_probs=128.4
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec-CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
..+..++|+ -..++++..|-+|++||-.+ ++...++. ....|++++|-|.+..-++.|+. +.|.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 345667787 45678888999999999766 55555553 45689999999988888777776 668999876433222
Q ss_pred ce---------eeecccCCceeeeEEEEeecCCEEEEeeC-CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEE
Q 009274 330 PL---------KKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 330 ~~---------~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (538)
.. ... .+.+......+.+.+||..+++++. |..|.|||..++..+.-.....+.++-+.|+ ++++++
T Consensus 177 r~~~~~s~~~~qvl-~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVL-QDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhhe-eCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 111 1122234445677788888888875 6789999999988766554456778899999 559999
Q ss_pred EecCCcEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCCEEEEEe
Q 009274 398 GSRDGTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 398 ~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (538)
+.-|+..++|+... ....+-... .+.+.. .+|+|+|++|+...
T Consensus 256 At~davfrlw~e~q~wt~erw~lg--sgrvqt-acWspcGsfLLf~~ 299 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILG--SGRVQT-ACWSPCGSFLLFAC 299 (445)
T ss_pred ecccceeeeehhcccceecceecc--CCceee-eeecCCCCEEEEEE
Confidence 99999999995543 333322222 234444 58999998766544
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-12 Score=122.68 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=50.4
Q ss_pred eeeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 11 KSVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
++..|+. |+|+..+....+. ......||+.|||||++ .| ...++.++|||||||++|+|++|+
T Consensus 148 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~ 213 (317)
T cd07868 148 RGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL------LG--------ARHYTKAIDIWAIGCIFAELLTSE 213 (317)
T ss_pred cCcEEEeecCceeccCCCCccccccCCccccccccCCHHH------cC--------CCCcCchhhHHHHHHHHHHHHhCC
Confidence 4568888 6677655432211 13458999999999998 33 134678999999999999999999
Q ss_pred -ccchh
Q 009274 88 -QFTKE 92 (538)
Q Consensus 88 -pf~~~ 92 (538)
||...
T Consensus 214 ~~f~~~ 219 (317)
T cd07868 214 PIFHCR 219 (317)
T ss_pred CCccCC
Confidence 99753
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-12 Score=125.30 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=70.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||++|+|++|+
T Consensus 132 ~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~el~tg~~ 194 (321)
T cd05591 132 EGHCKLADFGMCKEGILNGV--TTTTFCGTPDYIAPEIL------QE---------LEYGPSVDWWALGVLMYEMMAGQP 194 (321)
T ss_pred CCCEEEeecccceecccCCc--cccccccCccccCHHHH------cC---------CCCCCccceechhHHHHHHhcCCC
Confidence 4567888 44444322221 24568899999999998 33 46788999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
||.......+. .+. . . ....+ ......+.+++.+||..+|.+|+...
T Consensus 195 Pf~~~~~~~~~~~i~-~-~------~~~~p--------------~~~~~~~~~ll~~~L~~dp~~R~~~~ 242 (321)
T cd05591 195 PFEADNEDDLFESIL-H-D------DVLYP--------------VWLSKEAVSILKAFMTKNPNKRLGCV 242 (321)
T ss_pred CCCCCCHHHHHHHHH-c-C------CCCCC--------------CCCCHHHHHHHHHHhccCHHHcCCCC
Confidence 99876444111 000 0 0 00000 00112367899999999999999643
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-12 Score=125.58 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=68.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... ......||+.|||||++ .+ ..++.++|||||||+||||++|+
T Consensus 136 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~G~~ 198 (323)
T cd05584 136 QGHVKLTDFGLCKESIHEGT--VTHTFCGTIEYMAPEIL------MR---------SGHGKAVDWWSLGALMYDMLTGAP 198 (323)
T ss_pred CCCEEEeeCcCCeecccCCC--cccccCCCccccChhhc------cC---------CCCCCcceecccHHHHHHHhcCCC
Confidence 3567888 45554322221 14467899999999998 33 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||........... +.. . .. .........+.+++.+||..+|.+||+
T Consensus 199 pf~~~~~~~~~~~----------~~~------~-~~----~~~~~~~~~~~~li~~~l~~~p~~R~~ 244 (323)
T cd05584 199 PFTAENRKKTIDK----------ILK------G-KL----NLPPYLTPEARDLLKKLLKRNPSSRLG 244 (323)
T ss_pred CCCCCCHHHHHHH----------HHc------C-CC----CCCCCCCHHHHHHHHHHcccCHhHcCC
Confidence 9987543311100 000 0 00 000011223778999999999999995
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-12 Score=124.52 Aligned_cols=77 Identities=26% Similarity=0.378 Sum_probs=54.0
Q ss_pred EEeeccceeeeeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhh
Q 009274 2 ILVMGRRVTKSVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVAC 78 (538)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~ 78 (538)
||+.+..--++..|+. |+++.......+. .....+||+.|||||++ .+ ...++.++|||||||
T Consensus 139 il~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlG~ 204 (317)
T cd07867 139 ILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL------LG--------ARHYTKAIDIWAIGC 204 (317)
T ss_pred EEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHh------cC--------CCccCcHHHHHhHHH
Confidence 3444333234567888 6777665432211 13457899999999998 33 134678999999999
Q ss_pred hhhhhhhcC-ccchh
Q 009274 79 ILLSLLIGE-QFTKE 92 (538)
Q Consensus 79 ~l~~lltg~-pf~~~ 92 (538)
++|||+||+ ||...
T Consensus 205 il~el~tg~~~f~~~ 219 (317)
T cd07867 205 IFAELLTSEPIFHCR 219 (317)
T ss_pred HHHHHHhCCCCcccc
Confidence 999999999 98753
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-12 Score=124.09 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=69.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 133 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~el~~G~~p 195 (316)
T cd05619 133 GHIKIADFGMCKENMLGDA--KTCTFCGTPDYIAPEIL------LG---------QKYNTSVDWWSFGVLLYEMLIGQSP 195 (316)
T ss_pred CCEEEccCCcceECCCCCC--ceeeecCCccccCHHHH------cC---------CCCCchhhhhhHHHHHHHHHhCCCC
Confidence 356777 44443221111 13468899999999999 33 45788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.......+. .......+.. .......+.+++.+||..+|.+|+++.
T Consensus 196 f~~~~~~~~~-----------------~~i~~~~~~~----~~~~~~~~~~li~~~l~~~P~~R~~~~ 242 (316)
T cd05619 196 FHGHDEEELF-----------------QSIRMDNPCY----PRWLTREAKDILVKLFVREPERRLGVK 242 (316)
T ss_pred CCCCCHHHHH-----------------HHHHhCCCCC----CccCCHHHHHHHHHHhccCHhhcCCCh
Confidence 9875443111 0000000000 001112367899999999999999975
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-12 Score=123.72 Aligned_cols=63 Identities=25% Similarity=0.435 Sum_probs=49.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+.+.. .....||+.|||||++ .+ ..++.++|||||||+||+|+||+ |
T Consensus 141 ~~~kl~Dfg~~~~~~~~~----~~~~~g~~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~tg~~p 201 (331)
T cd06649 141 GEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVELAIGRYP 201 (331)
T ss_pred CcEEEccCcccccccccc----cccCCCCcCcCCHhHh------cC---------CCCCchHhHHHHHHHHHHHHhCCCC
Confidence 457887 5555554332 3467899999999999 44 45788999999999999999999 9
Q ss_pred cchhh
Q 009274 89 FTKEL 93 (538)
Q Consensus 89 f~~~~ 93 (538)
|....
T Consensus 202 ~~~~~ 206 (331)
T cd06649 202 IPPPD 206 (331)
T ss_pred CCCCC
Confidence 97643
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-12 Score=126.83 Aligned_cols=131 Identities=16% Similarity=0.239 Sum_probs=75.8
Q ss_pred eeeeeec--cccccccccc-hhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 11 KSVAKVG--CVGSRICDKE-VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
++..|+. |+++...... ........+||+.|||||++ .+ ....+++++|||||||++|+|+||+
T Consensus 139 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~-------~~~~~~~~~DvwSlGvvl~el~tg~ 205 (338)
T cd07859 139 DCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELC------GS-------FFSKYTPAIDIWSIGCIFAEVLTGK 205 (338)
T ss_pred CCcEEEccCccccccccccCccccccCCCCCCCcCCHHHH------hc-------cccccCchhHHHHHHHHHHHHHcCC
Confidence 3467888 5555443222 12223467999999999998 22 1245778999999999999999999
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHH---------HHHH-------HHhhhcCccchHHHHHhhhhccCCC
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK---------VTYL-------LENKFGSEFVSLQLMFCQCLNFDPG 150 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (538)
||.+............. ...++...... .... .....+.....+.+++.+||..+|.
T Consensus 206 ~pf~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~ 279 (338)
T cd07859 206 PLFPGKNVVHQLDLITDL------LGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPK 279 (338)
T ss_pred CCCCCCChHHHHHHHHHH------hCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcc
Confidence 99764332110000000 00000000000 0000 0001112223467899999999999
Q ss_pred CCcchhhHHH
Q 009274 151 CRPLLTNVWK 160 (538)
Q Consensus 151 ~r~~~~~~~~ 160 (538)
+||++.++.+
T Consensus 280 ~Rpt~~e~l~ 289 (338)
T cd07859 280 DRPTAEEALA 289 (338)
T ss_pred cCCCHHHHhc
Confidence 9999887765
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-12 Score=122.34 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=70.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+...... .....||+.|||||++ .+ ..++.++|+|||||++|+|++|+
T Consensus 133 ~~~~~l~dfg~~~~~~~~~~~--~~~~~g~~~y~aPE~~------~~---------~~~~~~~DvwslG~il~el~~g~~ 195 (280)
T cd05608 133 DGNVRISDLGLAVELKDGQSK--TKGYAGTPGFMAPELL------QG---------EEYDFSVDYFALGVTLYEMIAARG 195 (280)
T ss_pred CCCEEEeeCccceecCCCCcc--ccccCCCcCccCHHHh------cC---------CCCCccccHHHHHHHHHHHHhCCC
Confidence 3457887 455555443321 3457899999999999 44 56778999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
||......... . .........+..........+.+++.+||..+|.+|++..
T Consensus 196 pf~~~~~~~~~-------------~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 247 (280)
T cd05608 196 PFRARGEKVEN-------------K----ELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFR 247 (280)
T ss_pred CCCCCCcchhH-------------H----HHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCC
Confidence 99764221000 0 0000000000000001122477899999999999999643
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-12 Score=133.29 Aligned_cols=63 Identities=21% Similarity=0.459 Sum_probs=47.6
Q ss_pred eeeeccccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccch
Q 009274 13 VAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (538)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~ 91 (538)
..|+..++...... ...+.++||+.|||||++ .| ..++.++|||||||+||||++|+ ||.+
T Consensus 286 ~vkl~DfG~~~~~~---~~~~~~~gt~~Y~APE~~------~~---------~~~~~~~DiwSlGvil~elltG~~pf~~ 347 (467)
T PTZ00284 286 RVRICDLGGCCDER---HSRTAIVSTRHYRSPEVV------LG---------LGWMYSTDMWSMGCIIYELYTGKLLYDT 347 (467)
T ss_pred eEEECCCCccccCc---cccccccCCccccCcHHh------hc---------CCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 36888555222111 114468999999999999 44 56789999999999999999999 9986
Q ss_pred hh
Q 009274 92 EL 93 (538)
Q Consensus 92 ~~ 93 (538)
..
T Consensus 348 ~~ 349 (467)
T PTZ00284 348 HD 349 (467)
T ss_pred CC
Confidence 43
|
|
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-12 Score=126.10 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=70.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++........ ....+||+.|||||++ .+ ...++.++|||||||+||+|+||. |
T Consensus 133 ~~~kl~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DvwslGvil~elltG~~P 196 (330)
T cd05586 133 GHIALCDFGLSKANLTDNKT--TNTFCGTTEYLAPEVL------LD--------EKGYTKHVDFWSLGVLVFEMCCGWSP 196 (330)
T ss_pred CCEEEecCCcCcCCCCCCCC--ccCccCCccccCHHHH------cC--------CCCCCCccceeccccEEEEeccCCCC
Confidence 457888 566554333221 4468899999999998 32 133678999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
|.......+. .+... ....+ . ......+.+++.+||..+|.+||+...
T Consensus 197 f~~~~~~~~~~~i~~~-------~~~~~---~-----------~~~~~~~~~li~~~L~~~P~~R~~~~~ 245 (330)
T cd05586 197 FYAEDTQQMYRNIAFG-------KVRFP---K-----------NVLSDEGRQFVKGLLNRNPQHRLGAHR 245 (330)
T ss_pred CCCCCHHHHHHHHHcC-------CCCCC---C-----------ccCCHHHHHHHHHHcCCCHHHCCCCCC
Confidence 9875443211 00000 00000 0 001123677999999999999997543
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-10 Score=100.85 Aligned_cols=289 Identities=13% Similarity=0.108 Sum_probs=181.1
Q ss_pred eeeccCcceeEEeecCCeEEEEE---eecC-----CCcEEEEEEc--C-CEEEEEeCCCcEEEEeCCCCceEEEEecCCc
Q 009274 225 ARAAGGVKDLVNGLSKGNVKFKD---LQGH-----RDCVTGLAVG--G-GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH 293 (538)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~---l~~h-----~~~V~~l~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 293 (538)
..+++.++.+++...- .+.+++ ++-| -+.|.-+.|. . -.+.....|+.|.+|++...+-...+.....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 4455666666655443 455554 2222 3567778887 3 3455567789999999988888888888889
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc---EEEEECC
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT---IKAWSLL 370 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~---i~iwd~~ 370 (538)
++.++.|+|++..++.+...|-.|.+|.+.+.+....-.. .......++++||++.+.++.-.. +.+....
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP------KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc------ccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 9999999999999999999999999999987543211111 122245689999998888776322 1222122
Q ss_pred CCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEE
Q 009274 371 DGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (538)
Q Consensus 371 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 450 (538)
....+..++..+-..+.+.|+++ +..+.+||---.-.+.... .+.......|+|.++++++|+.|+.+|+
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Leykv~aYe---~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLEYKVYAYE---RGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHHhcCCCcccccCceECCC-------CcEEEEecchhhheeeeee---eccceeEEEeccccceEEeeccchhhhh
Confidence 23345555555666788889832 3345567643222222222 1122233699999999999999999988
Q ss_pred Ee------CCc---------------------cee-----------eeccc-----------------------------
Q 009274 451 WR------NDK---------------------FMK-----------SMQTH----------------------------- 463 (538)
Q Consensus 451 wd------~~~---------------------~~~-----------~~~~h----------------------------- 463 (538)
.+ ..+ ..+ .+..|
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn 316 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN 316 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence 54 010 000 00001
Q ss_pred -cceEEEEEe--CCCEEEEEeCC--CeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC--EEEEEECCCeEEEEEc
Q 009274 464 -KGSVFAVFL--EGKWLFTGGWD--KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKVYYY 536 (538)
Q Consensus 464 -~~~v~~~~~--~~~~l~sgs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~~dg~v~vw~~ 536 (538)
...+--++| |..+++|-.+. +.+-+||+...++........ .+....|+.+ +|+.+.....+++|..
T Consensus 317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~------piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH------PIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc------ceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 001222334 67777776543 678999999887655444332 5666667654 4777777777888864
|
|
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-12 Score=124.36 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=69.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||++|+|++|+
T Consensus 132 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~------~~---------~~~~~~~DiwslGvil~~l~~G~~ 194 (318)
T cd05570 132 EGHIKIADFGMCKEGILGGV--TTSTFCGTPDYIAPEIL------SY---------QPYGPAVDWWALGVLLYEMLAGQS 194 (318)
T ss_pred CCcEEecccCCCeecCcCCC--cccceecCccccCHHHh------cC---------CCCCcchhhhhHHHHHHHHhhCCC
Confidence 3457787 45543221111 13467899999999999 44 56788999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.......+. .+. .. . .. . .......+.+++.+||..+|.+||++
T Consensus 195 pf~~~~~~~~~~~i~--~~-------~-~~--------~----~~~~~~~~~~li~~~l~~dP~~R~s~ 241 (318)
T cd05570 195 PFEGDDEDELFQSIL--ED-------E-VR--------Y----PRWLSKEAKSILKSFLTKNPEKRLGC 241 (318)
T ss_pred CCCCCCHHHHHHHHH--cC-------C-CC--------C----CCcCCHHHHHHHHHHccCCHHHcCCC
Confidence 99865433111 000 00 0 00 0 00111237789999999999999997
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-12 Score=123.56 Aligned_cols=124 Identities=12% Similarity=0.076 Sum_probs=76.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc--C
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG--E 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg--~ 87 (538)
...|+. |+++.+...+.........+++.|||||++ .+ +.+++++|||||||++|+|+++ .
T Consensus 175 ~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~~l~el~~~~~~ 239 (304)
T cd05096 175 LTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECI------LM---------GKFTTASDVWAFGVTLWEILMLCKE 239 (304)
T ss_pred ccEEECCCccceecccCceeEecCcCCCCccccCHHHH------hc---------CCCCchhhhHHHHHHHHHHHHccCC
Confidence 467888 666666544322223356778999999998 33 5678999999999999999974 4
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.......+. .......+.................+.+++.+|+..+|.+||+..++.+.+.
T Consensus 240 ~p~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 240 QPYGELTDEQVI-------------ENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred CCCCcCCHHHHH-------------HHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence 88764333111 0000000000000000011122234888999999999999999998876543
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.9e-13 Score=124.83 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=77.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++-+|+- |+|+.+....++ -+|||||.|.|||++ ++...+.+.|+||||+++||||||+
T Consensus 556 ~Gy~KLVDFGFAKki~~g~KT---wTFcGTpEYVAPEII---------------LnKGHD~avDyWaLGIli~ELL~G~p 617 (732)
T KOG0614|consen 556 RGYLKLVDFGFAKKIGSGRKT---WTFCGTPEYVAPEII---------------LNKGHDRAVDYWALGILIYELLTGSP 617 (732)
T ss_pred CCceEEeehhhHHHhccCCce---eeecCCcccccchhh---------------hccCcchhhHHHHHHHHHHHHHcCCC
Confidence 4667776 889999888774 479999999999999 3345568999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||.+.++....++.++.-. .+..+.. + .....+++.+....+|..|-.
T Consensus 618 PFs~~dpmktYn~ILkGid----~i~~Pr~----I-----------~k~a~~Lik~LCr~~P~ERLG 665 (732)
T KOG0614|consen 618 PFSGVDPMKTYNLILKGID----KIEFPRR----I-----------TKTATDLIKKLCRDNPTERLG 665 (732)
T ss_pred CCCCCchHHHHHHHHhhhh----hhhcccc----c-----------chhHHHHHHHHHhcCcHhhhc
Confidence 9999877754433333221 1211111 1 112556888888899999865
|
|
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-12 Score=126.04 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=68.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 132 ~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvil~ell~g~~P 194 (323)
T cd05595 132 GHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRLP 194 (323)
T ss_pred CCEEecccHHhccccCCCC--ccccccCCcCcCCcccc------cC---------CCCCchhchhhhHHHHHHHHhCCCC
Confidence 467888 44554322221 14468899999999998 43 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|.......+.... ...... . .......+.+++.+||..+|.+|+.
T Consensus 195 f~~~~~~~~~~~~---------~~~~~~--------~----p~~~~~~~~~li~~~L~~dP~~R~~ 239 (323)
T cd05595 195 FYNQDHERLFELI---------LMEEIR--------F----PRTLSPEAKSLLAGLLKKDPKQRLG 239 (323)
T ss_pred CCCCCHHHHHHHH---------hcCCCC--------C----CCCCCHHHHHHHHHHccCCHHHhCC
Confidence 9765433111000 000000 0 0011234778999999999999984
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-12 Score=125.97 Aligned_cols=65 Identities=18% Similarity=0.392 Sum_probs=50.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++...... ..+...||+.|||||++ .| ..++.++|||||||+||+|++|+
T Consensus 162 ~~~~kL~DfG~a~~~~~~~---~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~ell~g~~ 223 (364)
T cd07875 162 DCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMIKGGV 223 (364)
T ss_pred CCcEEEEeCCCccccCCCC---cccCCcccCCcCCHHHH------hC---------CCCCchhhHHhHHHHHHHHHhCCC
Confidence 3457888 5666554321 24567899999999999 44 56778999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||.+..
T Consensus 224 pf~~~~ 229 (364)
T cd07875 224 LFPGTD 229 (364)
T ss_pred CCCCCC
Confidence 998654
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-12 Score=124.55 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=68.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 133 ~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~P 195 (329)
T cd05618 133 GHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL------RG---------EDYGFSVDWWALGVLMFEMMAGRSP 195 (329)
T ss_pred CCEEEeeCCccccccCCCC--ccccccCCccccCHHHH------cC---------CCCCCccceecccHHHHHHhhCCCC
Confidence 457887 55554322111 14468999999999999 44 56778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|......... ............... ....+ .....+.+++.+||..+|.+|+++
T Consensus 196 f~~~~~~~~~------------~~~~~~~~~~~i~~~-~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~ 250 (329)
T cd05618 196 FDIVGSSDNP------------DQNTEDYLFQVILEK-QIRIPRSLSVKAASVLKSFLNKDPKERLGC 250 (329)
T ss_pred CccCCCcCCc------------ccccHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence 9642111000 000000000000000 00011 122346789999999999999985
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-12 Score=124.68 Aligned_cols=107 Identities=18% Similarity=0.121 Sum_probs=69.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|+||+ |
T Consensus 138 ~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~elltG~~p 200 (324)
T cd05587 138 GHIKIADFGMCKENIFGGK--TTRTFCGTPDYIAPEII------AY---------QPYGKSVDWWAFGVLLYEMLAGQPP 200 (324)
T ss_pred CCEEEeecCcceecCCCCC--ceeeecCCccccChhhh------cC---------CCCCcccchhhhHHHHHHHHhCCCC
Confidence 457888 44443221211 14468899999999999 43 55778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.+.....+.. ......... .......+.+++.+||..+|.+|++.+
T Consensus 201 f~~~~~~~~~~-----------------~i~~~~~~~----~~~~~~~~~~li~~~l~~~P~~R~~~~ 247 (324)
T cd05587 201 FDGEDEDELFQ-----------------SIMEHNVSY----PKSLSKEAVSICKGLLTKHPAKRLGCG 247 (324)
T ss_pred CCCCCHHHHHH-----------------HHHcCCCCC----CCCCCHHHHHHHHHHhhcCHHHcCCCC
Confidence 98754431110 000000000 001112367899999999999999863
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-12 Score=120.40 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=74.1
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-p 88 (538)
.+|+. |+++.+.............+++.|||||++ .+ ..++.++|||||||++|+|++ |+ |
T Consensus 157 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~~g~~p 221 (277)
T cd05036 157 VAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF------LD---------GIFTSKTDVWSFGVLLWEIFSLGYMP 221 (277)
T ss_pred ceEeccCccccccCCccceecCCCCCccHhhCCHHHH------hc---------CCcCchhHHHHHHHHHHHHHcCCCCC
Confidence 57888 566665433221112234456789999999 33 567899999999999999997 88 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
|.......+........ .. ........++.+++.+|+..+|++||+..++.+.+.
T Consensus 222 f~~~~~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 222 YPGRTNQEVMEFVTGGG-----RL---------------DPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred CCCCCHHHHHHHHHcCC-----cC---------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 98754441110000000 00 000111234778999999999999999998876543
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-12 Score=123.46 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=70.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... ......||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 138 ~~ikL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~elltG~~p 200 (323)
T cd05615 138 GHIKIADFGMCKEHMVDGV--TTRTFCGTPDYIAPEII------AY---------QPYGKSVDWWAYGVLLYEMLAGQPP 200 (323)
T ss_pred CCEEEeccccccccCCCCc--cccCccCCccccCHHHH------cC---------CCCCCccchhhhHHHHHHHHhCCCC
Confidence 456787 55554432221 24467899999999999 43 55788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.+.....+.. .+..............+.+++.+||.++|.+|++..
T Consensus 201 f~~~~~~~~~~---------------------~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~ 247 (323)
T cd05615 201 FDGEDEDELFQ---------------------SIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCG 247 (323)
T ss_pred CCCCCHHHHHH---------------------HHHhCCCCCCccCCHHHHHHHHHHcccCHhhCCCCC
Confidence 98764431110 000000000001112367899999999999999854
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-12 Score=129.86 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=76.0
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+|+.+..... ....+||+.|||||++ .| ...++.++|||||||+||||++|. ||
T Consensus 209 ~vkL~DFGla~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlGvil~elltG~~pf 271 (440)
T PTZ00036 209 TLKLCDFGSAKNLLAGQR---SVSYICSRFYRAPELM------LG--------ATNYTTHIDLWSLGCIIAEMILGYPIF 271 (440)
T ss_pred ceeeeccccchhccCCCC---cccCCCCcCccCHHHh------cC--------CCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 57888 67776654432 3357899999999998 33 235788999999999999999999 99
Q ss_pred chhhhh-heee-ccccccCcchhhcchhhHHHH-HHHH----HHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELID-YIRC-VSTKASDDNIACLGMYMAWME-KVTY----LLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.+.... .+.. ++.......-......+.... ..+. ......+ ....++.+++.+||..+|.+|+++.++..
T Consensus 272 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~ 350 (440)
T PTZ00036 272 SGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA 350 (440)
T ss_pred CCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence 875433 1110 000000000000000000000 0000 0000001 12234788999999999999999988765
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-12 Score=126.09 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=74.7
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~ 90 (538)
-||| |||..+...- -+.+.|||.|||||..+| .|+...||||||+|++||.|+. ||.
T Consensus 185 VKIGDLGLAtl~r~s~----aksvIGTPEFMAPEmYEE----------------~YnE~VDVYaFGMCmLEMvT~eYPYs 244 (632)
T KOG0584|consen 185 VKIGDLGLATLLRKSH----AKSVIGTPEFMAPEMYEE----------------NYNELVDVYAFGMCMLEMVTSEYPYS 244 (632)
T ss_pred eeecchhHHHHhhccc----cceeccCccccChHHHhh----------------hcchhhhhhhhhHHHHHHHhccCChh
Confidence 4899 7776666432 235999999999999843 3567999999999999999999 998
Q ss_pred hh-hhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 91 KE-LIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 91 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.= ++..|. .....+..|..+. ....+++.++|.+||.. ...|+++.++..
T Consensus 245 EC~n~AQIY----------------KKV~SGiKP~sl~---kV~dPevr~fIekCl~~-~~~R~sa~eLL~ 295 (632)
T KOG0584|consen 245 ECTNPAQIY----------------KKVTSGIKPAALS---KVKDPEVREFIEKCLAT-KSERLSAKELLK 295 (632)
T ss_pred hhCCHHHHH----------------HHHHcCCCHHHhh---ccCCHHHHHHHHHHhcC-chhccCHHHHhh
Confidence 63 222222 0011111222221 23455688999999998 889999887654
|
|
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-12 Score=124.71 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=74.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++..... ....+||+.|||||++ .+ ..++.++|||||||+||||++|.
T Consensus 137 ~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~ell~g~~ 196 (333)
T cd05600 137 SGHIKLTDFGLSKGIVTY-----ANSVVGSPDYMAPEVL------RG---------KGYDFTVDYWSLGCMLYEFLCGFP 196 (333)
T ss_pred CCCEEEEeCcCCcccccc-----cCCcccCccccChhHh------cC---------CCCCCccceecchHHHhhhhhCCC
Confidence 3467888 556555432 4468999999999999 44 46789999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||...+...+. .+..... ....+... . ........+.+++.+||..+|.+||++.++.+
T Consensus 197 pf~~~~~~~~~~~i~~~~~-----~~~~~~~~-~--------~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~ 256 (333)
T cd05600 197 PFSGSTPNETWENLKYWKE-----TLQRPVYD-D--------PRFNLSDEAWDLITKLINDPSRRFGSLEDIKN 256 (333)
T ss_pred CCCCCCHHHHHHHHHhccc-----cccCCCCC-c--------cccccCHHHHHHHHHHhhChhhhcCCHHHHHh
Confidence 99875443111 0000000 00000000 0 00011224778999999999999999777655
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-12 Score=119.59 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=68.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... ....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 139 ~~~~l~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~Diws~G~~l~el~~g~~p 200 (285)
T cd05605 139 GHIRISDLGLAVEIPEGET---IRGRVGTVGYMAPEVV------KN---------ERYTFSPDWWGLGCLIYEMIEGKSP 200 (285)
T ss_pred CCEEEeeCCCceecCCCCc---cccccCCCCccCcHHh------cC---------CCCCccccchhHHHHHHHHHHCCCC
Confidence 456777 55555543321 2356899999999998 33 55778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|.+....... ......+...+..........+.+++.+||..+|.+||+.
T Consensus 201 f~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~ 250 (285)
T cd05605 201 FRQRKEKVKR-----------------EEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGC 250 (285)
T ss_pred CCCCchhhHH-----------------HHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCC
Confidence 9864332000 0000000000000001112237789999999999999954
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-12 Score=120.69 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=71.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |++..+..... .....||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 132 ~~~~l~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslGv~l~el~~g~~p 193 (277)
T cd05607 132 GNCRLSDLGLAVELKDGKT---ITQRAGTNGYMAPEIL------KE---------EPYSYPVDWFAMGCSIYEMVAGRTP 193 (277)
T ss_pred CCEEEeeceeeeecCCCce---eeccCCCCCccCHHHH------cc---------CCCCCchhHHHHHHHHHHHHhCCCC
Confidence 456777 55555543321 3357899999999998 33 45789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
|........ .... ...................+.+++.+||..+|.+||++.++.
T Consensus 194 ~~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~ 248 (277)
T cd05607 194 FKDHKEKVA-------------KEEL---KRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKN 248 (277)
T ss_pred CCCCcchhh-------------HHHH---HHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccch
Confidence 975322100 0000 000000000000011122478899999999999999987654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-12 Score=123.79 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=69.2
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.. +++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 133 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~ell~g~~p 195 (327)
T cd05617 133 GHIKLTDYGMCKEGLGPGD--TTSTFCGTPNYIAPEIL------RG---------EEYGFSVDWWALGVLMFEMMAGRSP 195 (327)
T ss_pred CCEEEeccccceeccCCCC--ceecccCCcccCCHHHH------CC---------CCCCchheeehhHHHHHHHHhCCCC
Confidence 4578884 4443221111 14468999999999999 44 56788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC-ccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|......... .............+. ..+. ....+.+++.+||..+|.+|++..
T Consensus 196 f~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~ 249 (327)
T cd05617 196 FDIITDNPDM--------------NTEDYLFQVILEKPI-RIPRFLSVKASHVLKGFLNKDPKERLGCQ 249 (327)
T ss_pred CCccCCCccc--------------ccHHHHHHHHHhCCC-CCCCCCCHHHHHHHHHHhccCHHHcCCCC
Confidence 9653211000 000000010110000 0111 122477899999999999999853
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-12 Score=122.26 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=48.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .+...||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 145 ~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwslG~~l~~l~~g~~~ 206 (288)
T cd07863 145 GQVKLADFGLARIYSCQMA---LTPVVVTLWYRAPEVL------LQ---------STYATPVDMWSVGCIFAEMFRRKPL 206 (288)
T ss_pred CCEEECccCccccccCccc---CCCccccccccCchHh------hC---------CCCCCcchhhhHHHHHHHHHhCCcC
Confidence 456777 55665543321 3467899999999998 33 55788999999999999999999 8
Q ss_pred cchh
Q 009274 89 FTKE 92 (538)
Q Consensus 89 f~~~ 92 (538)
|.+.
T Consensus 207 f~~~ 210 (288)
T cd07863 207 FCGN 210 (288)
T ss_pred cCCC
Confidence 8664
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-12 Score=119.08 Aligned_cols=122 Identities=7% Similarity=-0.066 Sum_probs=76.5
Q ss_pred eeeeec--cccccccccchhh-----hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhh
Q 009274 12 SVAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLL 84 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~ll 84 (538)
+.+|+. |+|+......... ......||+.|||||+. .| ..++.++|||||||+||||+
T Consensus 163 ~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~------~~---------~~~~~~~DiwSlG~~l~el~ 227 (294)
T PHA02882 163 NRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAH------NG---------ACVTRRGDLESLGYCMLKWA 227 (294)
T ss_pred CcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHh------CC---------CCCCcHHHHHHHHHHHHHHH
Confidence 456777 7777664322110 01235799999999998 44 56789999999999999999
Q ss_pred hcC-ccchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 85 IGE-QFTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 85 tg~-pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
+|. ||...... .+. ..........+.. ...........+.+++..|+..+|++||...++.+.+
T Consensus 228 ~g~~P~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~ 293 (294)
T PHA02882 228 GIKLPWKGFGHNGNLI-------------HAAKCDFIKRLHE-GKIKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF 293 (294)
T ss_pred hCCCCCCccccchHHH-------------HHhHHHHHHHhhh-hhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence 999 99865222 100 0000000000000 0001122234578899999999999999988877643
|
|
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-12 Score=123.23 Aligned_cols=120 Identities=15% Similarity=0.188 Sum_probs=76.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++...............+++.|||||++ .+ ..++.++|||||||+||+|++ |.
T Consensus 250 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~sDi~slG~~l~ellt~g~ 314 (375)
T cd05104 250 GRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESI------FN---------CVYTFESDVWSYGILLWEIFSLGS 314 (375)
T ss_pred CCcEEEecCccceeccCcccccccCCCCCCcceeChhHh------cC---------CCCCCCCCHHHHHHHHHHHHhcCC
Confidence 3468888 566665443322112235567889999998 43 567899999999999999998 77
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||......... . ....... ...........+.+++.+||..+|.+||+..++.+.+.+
T Consensus 315 ~p~~~~~~~~~~-------------~---~~~~~~~---~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 315 SPYPGMPVDSKF-------------Y---KMIKEGY---RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred CCCCCCCchHHH-------------H---HHHHhCc---cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence 98764222000 0 0000000 000000112347889999999999999999999887664
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-12 Score=123.18 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=74.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... ......||+.|||||++ .+ ...++.++|||||||++|+|+||+ |
T Consensus 140 ~~~kl~DfG~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~~l~~g~~p 203 (288)
T cd07871 140 GELKLADFGLARAKSVPTK--TYSNEVVTLWYRPPDVL------LG--------STEYSTPIDMWGVGCILYEMATGRPM 203 (288)
T ss_pred CCEEECcCcceeeccCCCc--cccCceecccccChHHh------cC--------CcccCcHHHHHHHHHHHHHHHhCCCC
Confidence 457888 55554433222 14567899999999998 33 245678999999999999999999 9
Q ss_pred cchhhhhheee--ccccccCcchhhcchhhHHHHHH----HH----HHHhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 89 FTKELIDYIRC--VSTKASDDNIACLGMYMAWMEKV----TY----LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 89 f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
|.+.+...... ......... ..+.......+.. +. ......+....+..+++.++|..+|.+||++.++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~ 282 (288)
T cd07871 204 FPGSTVKEELHLIFRLLGTPTE-ETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAA 282 (288)
T ss_pred CCCCCHHHHHHHHHHHhCCCCh-HHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence 98754431110 000000000 0000000000000 00 0000011222347789999999999999998876
Q ss_pred HH
Q 009274 159 WK 160 (538)
Q Consensus 159 ~~ 160 (538)
.+
T Consensus 283 l~ 284 (288)
T cd07871 283 LR 284 (288)
T ss_pred hc
Confidence 54
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-12 Score=124.32 Aligned_cols=65 Identities=22% Similarity=0.469 Sum_probs=50.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++...... ..+...||+.|||||++ .| ..++.++|||||||++|+|++|+
T Consensus 159 ~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~el~tg~~ 220 (359)
T cd07876 159 DCTLKILDFGLARTACTNF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGELVKGSV 220 (359)
T ss_pred CCCEEEecCCCccccccCc---cCCCCcccCCCCCchhc------cC---------CCCCcchhhHHHHHHHHHHHhCCC
Confidence 4567888 5555543322 24467899999999998 44 56788999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||.+.+
T Consensus 221 pf~~~~ 226 (359)
T cd07876 221 IFQGTD 226 (359)
T ss_pred CCCCCC
Confidence 998653
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-09 Score=95.44 Aligned_cols=221 Identities=16% Similarity=0.198 Sum_probs=144.9
Q ss_pred eeeeccCcceeEEeecCCeEEEEEee-----------cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC----CCceEE
Q 009274 224 QARAAGGVKDLVNGLSKGNVKFKDLQ-----------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK----DFSHVH 286 (538)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~l~-----------~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~----~~~~~~ 286 (538)
.+...+....+++.+.+..+++|.-. .-..+++++.+. ...|+.|-..|++.-+.+. ....++
T Consensus 29 ~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r 108 (404)
T KOG1409|consen 29 AAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK 108 (404)
T ss_pred hheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh
Confidence 33344555566677777777777522 234678888888 6778888889999888653 345566
Q ss_pred EEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEE
Q 009274 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 287 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~i 366 (538)
.+..|...|..+.|+-. ...+++.+.|..+.---.+.+............ .+...|-.+.+.|...|.|..
T Consensus 109 ~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--------t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 109 DYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--------SALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeeccC--------CCCceeeEEEEecccccceEE
Confidence 67789999999999763 446678887776643333333222111111100 011111115566666666665
Q ss_pred EEC--CCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 009274 367 WSL--LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 367 wd~--~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
..+ ..-.++.++.+|.+.+++++|. +..+++|..|..+.+||+...+-.......+...+.. ++.-+--+.++++
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~-l~~~~~t~~l~S~ 258 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA-LSYAQHTRQLISC 258 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh-hhhhhhheeeeec
Confidence 544 4456788999999999999999 6699999999999999997655433322222333332 3555556789999
Q ss_pred eCCCcEEEEeCC
Q 009274 443 HESGSIKVWRND 454 (538)
Q Consensus 443 ~~dg~i~iwd~~ 454 (538)
+.||.|.+||.+
T Consensus 259 ~edg~i~~w~mn 270 (404)
T KOG1409|consen 259 GEDGGIVVWNMN 270 (404)
T ss_pred cCCCeEEEEecc
Confidence 999999999854
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=113.60 Aligned_cols=282 Identities=15% Similarity=0.250 Sum_probs=177.5
Q ss_pred eEEEEEeecCCCcEEEEEE-c-CCEEEEEeCCCcEEEEeCC-------CCceEEEEecCCcCeEEEEEecCCCCEEEEEc
Q 009274 242 NVKFKDLQGHRDCVTGLAV-G-GGFLFSSSFDKSIHVWSLK-------DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~-~-~~~l~s~s~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 312 (538)
.+++.++.||...|..++- + .+-+++++.|.+|++|.+. +..+..+++.|+.+|.++.|..+.. . .++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~--i~S 801 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-S--IAS 801 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-e--eee
Confidence 3566678899999999865 4 8889999999999999985 3346788899999999999987443 3 345
Q ss_pred CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEE-eeCCCcEEEEECCCCceeEEec-----CCCCCe
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYT-GSGDRTIKAWSLLDGTLSCTMS-----GHKSAV 385 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~-----~h~~~v 385 (538)
.||.|++||.--+.....+.. ..+......+.++.. +...+.. ++...+|+++|.+.++...+++ +....+
T Consensus 802 cD~giHlWDPFigr~Laq~~d--apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMED--APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred ccCcceeecccccchhHhhhc--CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 689999999654332221111 111112233445444 3444444 4778999999999887666553 345668
Q ss_pred EEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEE-EeCCcceeee--
Q 009274 386 STLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV-WRNDKFMKSM-- 460 (538)
Q Consensus 386 ~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~-- 460 (538)
.+++.. ++.++.+-.+|.|.+.|.++|+.+..++.-.-.... --.|..+.++....|.++.+ |..-..+..+
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq---laapsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ---LAAPSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh---hcCchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 888887 779999999999999999999988776543211111 12355567777777888888 8633222222
Q ss_pred ccccceEEEEEeCCCEEEEEeCCCeEEEEecCCCee----EeeeecCCcccCCCceEEEEEe-CCEEEEEECCCeEEE
Q 009274 461 QTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEF----EEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKV 533 (538)
Q Consensus 461 ~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~v~v 533 (538)
+....+..-+..-|..|+++.....+.+|.-..... ....... .+ .+........| +-.+++|...|.|.+
T Consensus 957 kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d-~f-~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 957 KPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPD-EF-PGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhcccccc-cc-CCccceeeeccccchhhccCCCCceee
Confidence 222222222222566788888888888885322110 0111111 11 11222233334 444778888888875
|
|
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-12 Score=120.19 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=74.3
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-p 88 (538)
..|+. |+++.+...+.........+++.|||||++ .+ +.++.++|||||||++|+|+| |. |
T Consensus 149 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~ellt~g~~p 213 (269)
T cd05044 149 VVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESL------LD---------GKFTTQSDVWSFGVLMWEILTLGQQP 213 (269)
T ss_pred ceEECCcccccccccccccccCcccCCCccccCHHHH------cc---------CCcccchhHHHHHHHHHHHHHcCCCC
Confidence 57787 555655443322222345678999999998 33 567899999999999999998 88 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
|.......+. .+.. ...+... . .....+.+++.+||..+|.+||+..++.+.+.
T Consensus 214 ~~~~~~~~~~~~~~~---------~~~~~~~-~-----------~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 214 YPALNNQEVLQHVTA---------GGRLQKP-E-----------NCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred CcccCHHHHHHHHhc---------CCccCCc-c-----------cchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 9764332111 0000 0000000 0 01123678999999999999999998877553
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-12 Score=124.76 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=50.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||+||||++|+ |
T Consensus 222 ~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslGvil~el~~g~~p 286 (392)
T PHA03207 222 ENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELL------AL---------DPYCAKTDIWSAGLVLFEMSVKNVT 286 (392)
T ss_pred CCEEEccCccccccCcccccccccccccccCccCHhHh------cC---------CCCCchhhHHHHHHHHHHHHHCCCC
Confidence 457787 566666554333223457899999999999 43 56778999999999999999999 9
Q ss_pred cchh
Q 009274 89 FTKE 92 (538)
Q Consensus 89 f~~~ 92 (538)
|.+.
T Consensus 287 f~~~ 290 (392)
T PHA03207 287 LFGK 290 (392)
T ss_pred CCCC
Confidence 9764
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-12 Score=116.57 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=49.8
Q ss_pred eeeccccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchh
Q 009274 14 AKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKE 92 (538)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~ 92 (538)
-||..++.--+.+.-+..++++||||.|+|||++ .. -.|+.+.|-|.+||++|||++|+ ||...
T Consensus 307 IKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVl------eD---------nDYgraVDWWG~GVVMYEMmCGRLPFyn~ 371 (516)
T KOG0690|consen 307 IKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGVGVVMYEMMCGRLPFYNK 371 (516)
T ss_pred eEeeecccchhcccccceeccccCChhhcCchhh------cc---------ccccceeehhhhhHHHHHHHhccCccccc
Confidence 4666443222233333348899999999999999 22 45778999999999999999999 99875
Q ss_pred hhh
Q 009274 93 LID 95 (538)
Q Consensus 93 ~~~ 95 (538)
...
T Consensus 372 dh~ 374 (516)
T KOG0690|consen 372 DHE 374 (516)
T ss_pred chh
Confidence 444
|
|
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-12 Score=117.62 Aligned_cols=118 Identities=13% Similarity=0.183 Sum_probs=75.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.......+ ......+++.|+|||++ .+ ..++.++|||||||++|+|++ |.
T Consensus 141 ~~~kl~df~~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~el~t~g~~ 204 (263)
T cd05052 141 HLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESL------AY---------NKFSIKSDVWAFGVLLWEIATYGMS 204 (263)
T ss_pred CcEEeCCCccccccccceee-ccCCCCCccccCCHHHh------cc---------CCCCchhHHHHHHHHHHHHHcCCCC
Confidence 457788 455555443221 11224457789999998 43 557789999999999999998 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+....... .. ... .............+.+++.+||..+|++||+..++.+.++.+
T Consensus 205 p~~~~~~~~~~--------------~~---~~~---~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 205 PYPGIDLSQVY--------------EL---LEK---GYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred CCCCCCHHHHH--------------HH---HHC---CCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 99765433111 00 000 000000111223488899999999999999999988876654
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-12 Score=117.56 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=74.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+..... ......|++.|+|||++ .+ ..++.++|+|||||++|+|++|+ |
T Consensus 138 ~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 200 (256)
T cd08529 138 DNVKIGDLGVAKLLSDNTN--FANTIVGTPYYLSPELC------ED---------KPYNEKSDVWALGVVLYECCTGKHP 200 (256)
T ss_pred CCEEEcccccceeccCccc--hhhccccCccccCHHHh------cC---------CCCCCccchHHHHHHHHHHHhCCCC
Confidence 457887 44555543322 24457899999999998 33 55778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+.... .......... ....++.+++.+|+..+|++||++.++.+
T Consensus 201 ~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 252 (256)
T cd08529 201 FDANNQGALILKI---------IRGVFPPVSQ-----------MYSQQLAQLIDQCLTKDYRQRPDTFQLLR 252 (256)
T ss_pred CCCCCHHHHHHHH---------HcCCCCCCcc-----------ccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence 9865433111000 0000000000 11124788999999999999999887764
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-12 Score=119.66 Aligned_cols=115 Identities=13% Similarity=0.190 Sum_probs=73.7
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+.+ +++...............+++.|+|||++ .+ ..++.++|||||||++|+|++ |.
T Consensus 159 ~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~~g~~ 223 (280)
T cd05092 159 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI------LY---------RKFTTESDIWSFGVVLWEIFTYGKQ 223 (280)
T ss_pred CCEEECCCCceeEcCCCceeecCCCccccccccCHHHh------cc---------CCcCchhhHHHHHHHHHHHHcCCCC
Confidence 4578884 45544333221112345568899999998 33 557889999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||......... ... + .. ...........+.+++.+||..+|.+||+..++...+
T Consensus 224 p~~~~~~~~~~~~~~-~--------~~------------~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l 278 (280)
T cd05092 224 PWYQLSNTEAIECIT-Q--------GR------------ELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRL 278 (280)
T ss_pred CCccCCHHHHHHHHH-c--------Cc------------cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence 98654333111 000 0 00 0000011223478899999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-12 Score=125.59 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=72.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+...... ....+||+.|||||++...... ....+.++|||||||+||||++|+ |
T Consensus 205 ~~~kL~DfG~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~----------~~~~~~~~DvwslGvil~el~~g~~p 272 (353)
T PLN00034 205 KNVKIADFGVSRILAQTMDP--CNSSVGTIAYMSPERINTDLNH----------GAYDGYAGDIWSLGVSILEFYLGRFP 272 (353)
T ss_pred CCEEEcccccceeccccccc--ccccccCccccCcccccccccc----------CcCCCcchhHHHHHHHHHHHHhCCCC
Confidence 457887 566665433221 3457899999999987221111 123456899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHH-HHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....... +. ........ ............+.+++.+||..+|.+||++.++.+
T Consensus 273 f~~~~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~ 327 (353)
T PLN00034 273 FGVGRQGD---------------WA---SLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQ 327 (353)
T ss_pred CCCCCCcc---------------HH---HHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 97432110 00 00000000 000000112234788999999999999999887765
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-12 Score=121.89 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=78.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeecccccccc-ccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVG-YGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~-~~sDi~slG~~l~~lltg~- 87 (538)
+|-|+- |++....+.++ +++.||+.+|-|||++ .| ..|+ |+.||||||||||-|.+|+
T Consensus 156 GlVKLTDFGFSNkf~PG~k---L~TsCGSLAYSAPEIL------LG---------DsYDAPAVDiWSLGVILyMLVCGq~ 217 (864)
T KOG4717|consen 156 GLVKLTDFGFSNKFQPGKK---LTTSCGSLAYSAPEIL------LG---------DSYDAPAVDIWSLGVILYMLVCGQP 217 (864)
T ss_pred CceEeeeccccccCCCcch---hhcccchhhccCchhh------hc---------CccCCcchhhhHHHHHHHHHHhCCC
Confidence 566776 88999998877 8899999999999999 44 3333 6799999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||...+....+ .+...-.--+|..... ++.++|..+|..+|.+|-+.++|..
T Consensus 218 PFqeANDSETL--------------TmImDCKYtvPshvS~-------eCrdLI~sMLvRdPkkRAslEeI~s 269 (864)
T KOG4717|consen 218 PFQEANDSETL--------------TMIMDCKYTVPSHVSK-------ECRDLIQSMLVRDPKKRASLEEIVS 269 (864)
T ss_pred ccccccchhhh--------------hhhhcccccCchhhhH-------HHHHHHHHHHhcCchhhccHHHHhc
Confidence 99864333111 0100000012222211 3778999999999999998877654
|
|
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-12 Score=118.89 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=76.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+.............++..|||||++ .+ ..++.++|+|||||+||||++ |.
T Consensus 161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~el~~~g~~ 225 (283)
T cd05090 161 LHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAI------MY---------GKFSSDSDIWSFGVVLWEIFSFGLQ 225 (283)
T ss_pred CcEEeccccccccccCCcceecccCCCccceecChHHh------cc---------CCCCchhhhHHHHHHHHHHHcCCCC
Confidence 346887 566655433322223457788999999998 33 567899999999999999999 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.+.....+.... ....... ........+.+++.+|+..+|.+||+..++.+.+.
T Consensus 226 p~~~~~~~~~~~~~---------~~~~~~~-----------~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 281 (283)
T cd05090 226 PYYGFSNQEVIEMV---------RKRQLLP-----------CSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLR 281 (283)
T ss_pred CCCCCCHHHHHHHH---------HcCCcCC-----------CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhh
Confidence 99764333111000 0000000 00011224778999999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.6e-12 Score=117.35 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=75.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+.+.... ......++..|||||++ .+ ..+++++|||||||++|+|+| |.
T Consensus 140 ~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~t~g~~ 203 (261)
T cd05072 140 LMCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEAI------NF---------GSFTIKSDVWSFGILLYEIVTYGKI 203 (261)
T ss_pred CcEEECCCccceecCCCcee-ccCCCccceecCCHHHh------cc---------CCCChhhhhhhhHHHHHHHHccCCC
Confidence 346777 556665543221 12345678899999998 33 567789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .+. . ... ..........+.+++.+|+..+|++||+..++.+.++.
T Consensus 204 p~~~~~~~~~~~~~~---~-----~~~-------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 204 PYPGMSNSDVMSALQ---R-----GYR-------------MPRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred CCCCCCHHHHHHHHH---c-----CCC-------------CCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 99765433111 000 0 000 00001112247789999999999999999988876654
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-08 Score=101.98 Aligned_cols=265 Identities=12% Similarity=0.055 Sum_probs=167.0
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCc----------Ce-EEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 009274 259 AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----------KV-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (538)
Q Consensus 259 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----------~v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (538)
.+.++.+++++.+|.+.-+|.++|+.+...+.... .+ ..+.. .+..++.++.+|.+.-+|.++++.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCC
Confidence 34578888888899999999999999887653321 00 01122 123456778899999999988876
Q ss_pred CcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCC-----eEEEEEeCCEEEEEecCC
Q 009274 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA-----VSTLAVCNGVLYSGSRDG 402 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~l~s~s~dg 402 (538)
.......... .. .....+..++.++.++.++.+|..+|+.++........ ..+....++.++.++.++
T Consensus 143 ~W~~~~~~~~---~s----sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g 215 (394)
T PRK11138 143 AWQTKVAGEA---LS----RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG 215 (394)
T ss_pred cccccCCCce---ec----CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC
Confidence 5544332110 00 11112556777888999999999999999887543111 112223366788888999
Q ss_pred cEEEEECCCCceeEEEecCCCCceE-----EEEEEcC--CCCEEEEEeCCCcEEEEeCCcceeeeccccceEEEEEeCCC
Q 009274 403 TIRLWSLSDHSLLTVLEEDSSGAVS-----SVLSLTA--VQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGK 475 (538)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~~~~~~~ 475 (538)
.+..+|..+|+.+............ .....+| .+..++.++.+|.+..+|..+-...++...+....+...+.
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 295 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGG 295 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECC
Confidence 9999999999887665422110000 0001111 25567778889999999965432222222222223344778
Q ss_pred EEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 476 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.++.++.+|.+..+|..+++.......... .........++.++.++.||.|...|..
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~----~~~~sp~v~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQSDLLH----RLLTAPVLYNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcccccCC----CcccCCEEECCEEEEEeCCCEEEEEECC
Confidence 888889999999999999887654332111 1112222347889999999999887754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-09 Score=106.05 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=135.3
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeC---CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC--cEEEE
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSF---DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG--GIFVW 320 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vw 320 (538)
+..+...+.+.+|+ |+.|+..+. +..|.+||+.+++... +....+.+....|+|++..++++.+.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 44466788999999 788876543 4579999998876433 2223344557899998887877766666 48888
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC-C--cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD-R--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVL 395 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l 395 (538)
|+.++.... ..... .......++|||+.|+..+.+ + .|+.+|+.+++.. .+..+.....+..|+ ++++
T Consensus 273 d~~tg~~~~----lt~~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 273 DLASGQIRQ----VTDGR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred ECCCCCEEE----ccCCC--CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEE
Confidence 987653221 11111 112245889999988776654 4 4555577666543 333344455677888 4466
Q ss_pred EEEecC---CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCc---EEEEeC-CcceeeeccccceEE
Q 009274 396 YSGSRD---GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS---IKVWRN-DKFMKSMQTHKGSVF 468 (538)
Q Consensus 396 ~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~-~~~~~~~~~h~~~v~ 468 (538)
+..+.+ ..|.+||+.+++.. .+..... . ....|+|||++|+.++.++. +.+++. +.....+..|.+.+.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~--~-~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDTFL--D-ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 421 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCCCCC--C-CCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcC
Confidence 665443 35889999888643 3332211 1 12579999999999888765 566674 445666777777666
Q ss_pred EEEe
Q 009274 469 AVFL 472 (538)
Q Consensus 469 ~~~~ 472 (538)
..+|
T Consensus 422 ~p~W 425 (429)
T PRK03629 422 FPAW 425 (429)
T ss_pred Cccc
Confidence 5544
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-12 Score=126.37 Aligned_cols=121 Identities=16% Similarity=0.210 Sum_probs=78.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++...............|++.|||||++ .+ ..+++++|||||||+||+|++ |.
T Consensus 274 ~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwSlGvil~ellt~g~~ 338 (400)
T cd05105 274 KIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESI------FD---------NLYTTLSDVWSYGILLWEIFSLGGT 338 (400)
T ss_pred CEEEEEeCCcceeccccccccccCCcCCCcceEChhhh------cC---------CCCCchhhHHHHHHHHHHHHHCCCC
Confidence 457887 566655433221112346788999999998 33 567889999999999999997 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.............+.. ..+ .........+.+++.+||..+|++||+..++.+.+.++.
T Consensus 339 P~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~ 398 (400)
T cd05105 339 PYPGMIVDSTFYNKIKSG-------YRM------------AKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL 398 (400)
T ss_pred CCcccchhHHHHHHHhcC-------CCC------------CCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence 997643220000000000 000 000111224778999999999999999999988887764
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.1e-12 Score=118.49 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=80.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+.+.+.........|+..|||||++ .+ ..++.++|||||||++|++++ |+
T Consensus 154 ~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~------~~---------~~~~~~~Di~slG~~l~el~~~g~~ 218 (280)
T cd05043 154 LQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESL------VN---------KEYSSASDVWSFGVLLWELMTLGQT 218 (280)
T ss_pred CcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHH------hc---------CCCCchhhHHHhHHHHHHHhcCCCC
Confidence 456777 777777655433223346678899999998 33 457789999999999999999 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||....+..+.. ........... .....+.+++.+|+..+|++||+..++...+..+.
T Consensus 219 p~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~ 277 (280)
T cd05043 219 PYVEIDPFEMAA---------------------YLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFH 277 (280)
T ss_pred CcCcCCHHHHHH---------------------HHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 998654432110 00000000000 11123778999999999999999999888777654
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-12 Score=118.43 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=73.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+..... -.....|++.|+|||++ .+ ..++.++|+|||||+||+|+||+
T Consensus 134 ~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~------~~---------~~~~~~sDv~slG~il~~l~tg~~ 196 (274)
T cd06609 134 EGDVKLADFGVSGQLTSTMS--KRNTFVGTPFWMAPEVI------KQ---------SGYDEKADIWSLGITAIELAKGEP 196 (274)
T ss_pred CCCEEEcccccceeeccccc--ccccccCCccccChhhh------cc---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 3456677 55666554321 13457899999999999 44 45789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||....+....... .....+.... ......+.+++.+||..+|++||++.++.+
T Consensus 197 p~~~~~~~~~~~~~---------~~~~~~~~~~----------~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 197 PLSDLHPMRVLFLI---------PKNNPPSLEG----------NKFSKPFKDFVSLCLNKDPKERPSAKELLK 250 (274)
T ss_pred CcccCchHHHHHHh---------hhcCCCCCcc----------cccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 99765433111000 0000000000 001123778999999999999999877654
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-12 Score=127.27 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=74.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++.+...... .....+||+.|||||++ .+ ......++.++|||||||+||||++|+
T Consensus 178 ~~~~kL~DfG~~~~~~~~~~~-~~~~~~gt~~y~aPE~~------~~-----~~~~~~~~~~~DiwSlGvilyelltG~~ 245 (370)
T cd05596 178 SGHLKLADFGTCMKMDANGMV-RCDTAVGTPDYISPEVL------KS-----QGGDGYYGRECDWWSVGVFLYEMLVGDT 245 (370)
T ss_pred CCCEEEEeccceeeccCCCcc-cCCCCCCCcCeECHHHh------cc-----CCCCCCCCCceeeeehhHHHHHHHhCCC
Confidence 4578888 556665433211 13357899999999998 22 001234778999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCC--CcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGC--RPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~--r~~~~~~~~ 160 (538)
||.+.....+. .+.. ... ....+ ........+.+++.+||..+|.+ |+++.++.+
T Consensus 246 Pf~~~~~~~~~~~i~~--~~~---~~~~~-------------~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~ 303 (370)
T cd05596 246 PFYADSLVGTYSKIMD--HKN---SLTFP-------------DDIEISKQAKDLICAFLTDREVRLGRNGVDEIKS 303 (370)
T ss_pred CcCCCCHHHHHHHHHc--CCC---cCCCC-------------CcCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence 99876443111 0000 000 00000 00011123678999999988887 888777644
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-12 Score=123.46 Aligned_cols=65 Identities=17% Similarity=0.357 Sum_probs=50.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++...... ......||+.|||||++ .| ..++.++|||||||+||+|++|+
T Consensus 155 ~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~ 216 (355)
T cd07874 155 DCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMVRHKI 216 (355)
T ss_pred CCCEEEeeCcccccCCCcc---ccCCccccCCccCHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 3567888 5666554332 24467899999999999 44 45778999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||.+..
T Consensus 217 pf~~~~ 222 (355)
T cd07874 217 LFPGRD 222 (355)
T ss_pred CCCCCC
Confidence 998643
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.3e-12 Score=124.44 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=47.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+...+.... .....+||+.|||||++ .+ ..+++++|||||||+||||+||. |
T Consensus 219 ~~vkL~DFG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvil~elltg~~p 282 (391)
T PHA03212 219 GDVCLGDFGAACFPVDINAN-KYYGWAGTIATNAPELL------AR---------DPYGPAVDIWSAGIVLFEMATCHDS 282 (391)
T ss_pred CCEEEEeCCccccccccccc-ccccccCccCCCChhhh------cC---------CCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 457787 566543332211 13468999999999998 33 56789999999999999999999 7
Q ss_pred cch
Q 009274 89 FTK 91 (538)
Q Consensus 89 f~~ 91 (538)
|..
T Consensus 283 ~~~ 285 (391)
T PHA03212 283 LFE 285 (391)
T ss_pred cCC
Confidence 643
|
|
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-11 Score=118.40 Aligned_cols=121 Identities=13% Similarity=0.191 Sum_probs=79.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+...|+. |+++.+.......-.....+++.|||||++ .+ ..++.++||||||+++|+|+| |.
T Consensus 163 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~------~~---------~~~~~~~Di~slG~~l~el~t~g~ 227 (290)
T cd05045 163 GRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL------FD---------HIYTTQSDVWSFGVLLWEIVTLGG 227 (290)
T ss_pred CCcEEeccccccccccCccchhcccCCCCCccccCHHHH------cc---------CCcchHhHHHHHHHHHHHHHhcCC
Confidence 3467787 566655433221112235678899999998 33 457789999999999999999 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+..+..+....... ... .........+.+++.+||+.+|.+||+..++.+.+.++.
T Consensus 228 ~p~~~~~~~~~~~~~~~~-------~~~-------------~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~ 287 (290)
T cd05045 228 NPYPGIAPERLFNLLKTG-------YRM-------------ERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMM 287 (290)
T ss_pred CCCCCCCHHHHHHHHhCC-------CCC-------------CCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence 99875444211000000 000 000111234778999999999999999999998888765
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-12 Score=122.11 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=68.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....+||+.|||||++ .+ ..++.++|+|||||++|+|+||+ |
T Consensus 133 ~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~~l~el~~g~~P 195 (329)
T cd05588 133 GHIKLTDYGMCKEGIRPGD--TTSTFCGTPNYIAPEIL------RG---------EDYGFSVDWWALGVLMFEMMAGRSP 195 (329)
T ss_pred CCEEECcCccccccccCCC--ccccccCCccccCHHHH------cC---------CCCCCccceechHHHHHHHHHCCCC
Confidence 456777 44443211111 14468999999999999 43 56778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|....... .. ................. ..+ .....+.+++.+||..+|.+|++.
T Consensus 196 f~~~~~~~--------~~----~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~ 250 (329)
T cd05588 196 FDIVGMSD--------NP----DQNTEDYLFQVILEKQI-RIPRSLSVKASSVLKGFLNKDPKERLGC 250 (329)
T ss_pred cccccccc--------cc----cccchHHHHHHHHcCCC-CCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence 97432110 00 00000000010100000 011 122347889999999999999974
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.7e-12 Score=118.90 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=71.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++....... .....||+.|||||++ .+ ..++.++|+|||||++|+|++|. |
T Consensus 139 ~~~kl~Dfg~~~~~~~~~~---~~~~~g~~~~~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~~g~~P 200 (285)
T cd05632 139 GHIRISDLGLAVKIPEGES---IRGRVGTVGYMAPEVL------NN---------QRYTLSPDYWGLGCLIYEMIEGQSP 200 (285)
T ss_pred CCEEEecCCcceecCCCCc---ccCCCCCcCccChHHh------cC---------CCCCcccchHHHHHHHHHHHhCCCC
Confidence 468888 55655543321 3457899999999998 33 56788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|......... ......+..............+.+++.+||..+|.+||++.
T Consensus 201 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 251 (285)
T cd05632 201 FRGRKEKVKR-----------------EEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQ 251 (285)
T ss_pred CCCCCHHHHH-----------------HHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCc
Confidence 9764332100 00000010000000111223477899999999999999954
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-08 Score=102.28 Aligned_cols=215 Identities=8% Similarity=0.071 Sum_probs=133.5
Q ss_pred CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc--CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEe
Q 009274 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD--SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (538)
..|.+||.+.... +.+..+...+.+.+|+|++..++++.. .+..+.+|++.++... .+....... ....++
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~-----~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHN-----GAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCc-----CCeEEC
Confidence 3688999875443 445557778999999998877765543 3457999998765422 122121111 134899
Q ss_pred ecCCEEEEe-eCCC--cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec-CCc--EEEEECCCCceeEEEecC
Q 009274 350 TSGRYLYTG-SGDR--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR-DGT--IRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 350 ~~~~~l~sg-~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~ 421 (538)
|||+.|+.. +.+| .|++||+.+++.... ..+...+....|+ ++.|+..+. ++. |.++|+.+++.. .+...
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~ 329 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE 329 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC
Confidence 999977754 4444 599999988776543 3344567788998 446666554 344 555577666543 33222
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCC---CcEEEEeCCc-ceeeecc-ccceEEEEEeCCCEEEEEeCCCe---EEEEecCC
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHES---GSIKVWRNDK-FMKSMQT-HKGSVFAVFLEGKWLFTGGWDKT---VSVQELAG 493 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~-~~~~~~~-h~~~v~~~~~~~~~l~sgs~dg~---v~iwd~~~ 493 (538)
. . ......|+|||++++..+.+ ..|.+||... ....+.. +...-.++++||++|+.++.++. +.++++.+
T Consensus 330 ~-~-~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 330 G-S-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred C-C-CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 1 1 12236899999998876643 3577888543 2233322 11222345679999999998764 67788866
Q ss_pred CeeE
Q 009274 494 DEFE 497 (538)
Q Consensus 494 ~~~~ 497 (538)
....
T Consensus 408 ~~~~ 411 (429)
T PRK03629 408 RFKA 411 (429)
T ss_pred CCeE
Confidence 5543
|
|
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-11 Score=107.36 Aligned_cols=101 Identities=19% Similarity=0.362 Sum_probs=68.3
Q ss_pred ccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh-heeeccccccCcchhhc
Q 009274 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNIACL 112 (538)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~~~~ 112 (538)
.-=|.-|.|||.+ .....-..+.+.|||||||+||+|+.|. ||+....+ --..+.+++.+ +..+
T Consensus 198 e~Ct~pyRAPELf------------~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q--~s~P 263 (302)
T KOG2345|consen 198 ERCTIPYRAPELF------------NVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQ--ISIP 263 (302)
T ss_pred HhCCCcccCchhe------------ecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccc--cccC
Confidence 4568899999988 1223467789999999999999999999 99975443 11112222221 1011
Q ss_pred chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
...+ ..+ .+.+++..||..+|.+||...++...+..+
T Consensus 264 ~~~~--------yse--------~l~~lik~mlqvdP~qRP~i~~ll~~~d~L 300 (302)
T KOG2345|consen 264 NSSR--------YSE--------ALHQLIKSMLQVDPNQRPTIPELLSKLDDL 300 (302)
T ss_pred CCCC--------ccH--------HHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence 1111 111 167899999999999999998887766554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.1e-09 Score=101.08 Aligned_cols=263 Identities=14% Similarity=0.074 Sum_probs=152.6
Q ss_pred CCEE-EEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCc
Q 009274 262 GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 262 ~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (538)
++++ ++-..++.|.+.|..+.+.+..+......-..+.|+|++. ++++++.||.|.++|+.+.+....++.-..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---- 79 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGGN---- 79 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SSE----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCCC----
Confidence 3444 4556789999999999999999987654434566777555 566677899999999998765444433211
Q ss_pred eeeeEEEEeecCCEEEEee-CCCcEEEEECCCCceeEEecCC-------CCCeEEEEEe--CC-EEEEEecCCcEEEEEC
Q 009274 341 RYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSGH-------KSAVSTLAVC--NG-VLYSGSRDGTIRLWSL 409 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~ 409 (538)
....++++||+++++++ .++.+.++|.++.++++.+... ...+.++..+ .. ++++--..+.|.+.|.
T Consensus 80 --~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 80 --PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp --EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred --cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 22458899999888775 5899999999999999887532 3456677666 33 4444455588888898
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCCcce--eee----ccccceE-----------EEEE
Q 009274 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKFM--KSM----QTHKGSV-----------FAVF 471 (538)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~----~~h~~~v-----------~~~~ 471 (538)
.+.+.+............. ..++|++++++++ ..++.|-++|..+.. ..+ ..|..+. +...
T Consensus 158 ~d~~~~~~~~i~~g~~~~D-~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHD-GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp TTSSCEEEEEEE--TTEEE-EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred ccccccceeeecccccccc-cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 7765543322222222333 6899999987765 456788899965432 221 1233333 3333
Q ss_pred eCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEE----ECCCeEEEEEcC
Q 009274 472 LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVG----CADRTVKVYYYG 537 (538)
Q Consensus 472 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg----~~dg~v~vw~~~ 537 (538)
-.+...++.-....+.+||....+........+ ........|++. +.+. ...+.|.++|..
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G-----~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG-----GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS-----SS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCC-----CcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 233333333333456678888877766665432 234555566665 5554 456889999875
|
... |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-11 Score=117.45 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=69.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |++........ .....||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 139 ~~~~l~Dfg~~~~~~~~~~---~~~~~g~~~y~aPE~~------~~---------~~~~~~~DiwslG~~l~~l~~g~~P 200 (285)
T cd05630 139 GHIRISDLGLAVHVPEGQT---IKGRVGTVGYMAPEVV------KN---------ERYTFSPDWWALGCLLYEMIAGQSP 200 (285)
T ss_pred CCEEEeeccceeecCCCcc---ccCCCCCccccChHHH------cC---------CCCCCccccHHHHHHHHHHHhCCCC
Confidence 356777 45554443321 2346899999999999 33 56788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|....... ........ ...............+.+++.+||..+|..||+.
T Consensus 201 f~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~ 250 (285)
T cd05630 201 FQQRKKKI--------------KREEVERL---VKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGC 250 (285)
T ss_pred CCCCCccc--------------hHHHHHhh---hhhhhhhcCccCCHHHHHHHHHHhhcCHHHccCC
Confidence 97642210 00000000 0000111111222347889999999999999983
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-12 Score=121.23 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=73.2
Q ss_pred eeeeecccc--ccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCVG--SRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+.+++ +...... .......|++.|||||.+ .+ ..+++++|||||||++|+|++|+ |
T Consensus 153 ~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~s~Gvil~~l~~g~~p 215 (296)
T cd06654 153 GSVKLTDFGFCAQITPEQ--SKRSTMVGTPYWMAPEVV------TR---------KAYGPKVDIWSLGIMAIEMIEGEPP 215 (296)
T ss_pred CCEEECccccchhccccc--cccCcccCCccccCHHHH------cC---------CCCCccchHHHHHHHHHHHHhCCCC
Confidence 467888554 4443332 123457899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....+........ ... ..... . .......+.+++.+||..+|..||++.++.+
T Consensus 216 f~~~~~~~~~~~~~--------~~~-~~~~~--~-------~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~ 269 (296)
T cd06654 216 YLNENPLRALYLIA--------TNG-TPELQ--N-------PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (296)
T ss_pred CCCCCHHHhHHHHh--------cCC-CCCCC--C-------ccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence 97654431110000 000 00000 0 0011123778999999999999999887765
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-11 Score=115.45 Aligned_cols=115 Identities=20% Similarity=0.143 Sum_probs=73.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+...+.. ...+..|+..|||||++ .+ ..++.++||||||+++|+|++ |.
T Consensus 139 ~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~~~g~~ 202 (260)
T cd05070 139 LVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAA------LY---------GRFTIKSDVWSFGILLTELVTKGRV 202 (260)
T ss_pred ceEEeCCceeeeeccCcccc-cccCCCCCccccChHHH------hc---------CCCcchhhhHHHHHHHHHHHhcCCC
Confidence 457787 556555443321 12245677899999988 32 557789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.......+. .+. ....+ .........+.+++.+|+..+|.+||+..++...+.
T Consensus 203 p~~~~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 258 (260)
T cd05070 203 PYPGMNNREVLEQVE---------RGYRM------------PCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLE 258 (260)
T ss_pred CCCCCCHHHHHHHHH---------cCCCC------------CCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHh
Confidence 99764333111 000 00000 000111234788999999999999999888776554
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.3e-12 Score=118.23 Aligned_cols=115 Identities=20% Similarity=0.229 Sum_probs=72.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+.............+++.|||||++ .+ ..+++++|||||||++|+|++ |.
T Consensus 156 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~~~~~ 220 (277)
T cd05062 156 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL------KD---------GVFTTYSDVWSFGVVLWEIATLAEQ 220 (277)
T ss_pred CCEEECCCCCccccCCcceeecCCCCccCHhhcChhHh------hc---------CCcCchhHHHHHHHHHHHHHcCCCC
Confidence 456777 555655433221111234668899999998 33 557789999999999999999 67
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||......... .+. ..... .........+.+++.+||..+|.+||+..++.+.+
T Consensus 221 p~~~~~~~~~~~~~~----------~~~~~-----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l 275 (277)
T cd05062 221 PYQGMSNEQVLRFVM----------EGGLL-----------DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI 275 (277)
T ss_pred CCCCCCHHHHHHHHH----------cCCcC-----------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHh
Confidence 98765433111 000 00000 00011223478899999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-08 Score=95.64 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=163.1
Q ss_pred eEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
...+..+......-..+.++ ++++++++.||.|.++|+.+++.+.+++.... ..++++++++..++++...++.+.+
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeE
Confidence 33455566554443456677 89999999999999999999999999986544 5789999988877777788999999
Q ss_pred EEccCCCCCcceeeecccC---CceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeE-EecCCCCCeEEEEEe--C
Q 009274 320 WSFSFPLGHEPLKKWNEEK---DWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSC-TMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~--~ 392 (538)
+|.++.+....+....... ......+.. ++... ++++--+.+.|.+.|....+.+. .............|+ +
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred eccccccceeecccccccccccCCCceeEEe-cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence 9998766555443322111 112222322 45555 44554555888888977654332 222234566778888 3
Q ss_pred CEEEE-EecCCcEEEEECCCCceeEEEecCC---CCceEE--------EEEEcCCCCEEEEEeCCCcEEEEeCC--ccee
Q 009274 393 GVLYS-GSRDGTIRLWSLSDHSLLTVLEEDS---SGAVSS--------VLSLTAVQHTLVVSHESGSIKVWRND--KFMK 458 (538)
Q Consensus 393 ~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~ 458 (538)
++++. ...++.|-++|..+++.+..+.... +..... +......+...++.-....+.+||.. +.++
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 45544 5667899999999988776654321 111111 01112222222222222344455533 4666
Q ss_pred eeccccceEE-EEEeCCCEEEEE----eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE--EEEEE-CCCe
Q 009274 459 SMQTHKGSVF-AVFLEGKWLFTG----GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGC-ADRT 530 (538)
Q Consensus 459 ~~~~h~~~v~-~~~~~~~~l~sg----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~sg~-~dg~ 530 (538)
++....+.+. ..+|+++++.+. ...+.|.++|.++.+......... ....+..-+.++|. +++.- .+|.
T Consensus 264 ~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~---~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 264 TIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP---GKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH---T--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC---CCcEeccEECCCCCEEEEEEecCCCE
Confidence 7766655543 346799999988 445899999999987654443221 11233444445665 44443 3448
Q ss_pred EEEEEcCC
Q 009274 531 VKVYYYGK 538 (538)
Q Consensus 531 v~vw~~~~ 538 (538)
|.+||-.+
T Consensus 341 i~v~D~~T 348 (369)
T PF02239_consen 341 IVVYDAKT 348 (369)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99998653
|
... |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-11 Score=116.53 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=76.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++.+.+...........+++.|||||++ .+ ..+++++|||||||++|+|++ |+
T Consensus 149 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~------~~---------~~~~~~~Di~slG~il~el~~~g~~ 213 (272)
T cd05075 149 MNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESL------AD---------RVYTTKSDVWSFGVTMWEIATRGQT 213 (272)
T ss_pred CCEEECCCCcccccCcccceecCCcccCCcccCCHHHc------cC---------CCcChHHHHHHHHHHHHHHHcCCCC
Confidence 456777 566666543321111234578899999998 33 557789999999999999999 77
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.. . ... .........+.+++.+||+.+|++||++.++.+.+.++
T Consensus 214 p~~~~~~~~~~~~~~~--~-------~~~------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~ 271 (272)
T cd05075 214 PYPGVENSEIYDYLRQ--G-------NRL------------KQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred CCCCCCHHHHHHHHHc--C-------CCC------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 99764333111 0000 0 000 00011122478899999999999999999988876653
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-12 Score=119.07 Aligned_cols=111 Identities=20% Similarity=0.342 Sum_probs=72.0
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.+ +++..... ........|++.|||||++ .+ ..+++++|+||||+++|+|++|. |
T Consensus 137 ~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~aPE~~------~~---------~~~~~~~Dv~slG~i~~~l~~g~~p 199 (255)
T cd08219 137 GKVKLGDFGSARLLTSP--GAYACTYVGTPYYVPPEIW------EN---------MPYNNKSDIWSLGCILYELCTLKHP 199 (255)
T ss_pred CcEEEcccCcceeeccc--ccccccccCCccccCHHHH------cc---------CCcCchhhhhhhchhheehhhccCC
Confidence 3467774 44444322 1123468899999999998 43 45778999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+.. .. ....+ . .....+.+++.+||..+|.+||+..++..
T Consensus 200 ~~~~~~~~~~~~~~~-~~-----~~~~~----~-----------~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 251 (255)
T cd08219 200 FQANSWKNLILKVCQ-GS-----YKPLP----S-----------HYSYELRSLIKQMFKRNPRSRPSATTILS 251 (255)
T ss_pred CCCCCHHHHHHHHhc-CC-----CCCCC----c-----------ccCHHHHHHHHHHHhCCcccCCCHHHHhh
Confidence 9865433111 0000 00 00000 0 01113667999999999999999887654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-11 Score=116.50 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-p 88 (538)
-+|+. |+++.+.............+++.|||||++ .+ ..+++++|||||||++|||++ |. |
T Consensus 151 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~------~~---------~~~~~~~Dv~SlG~il~el~~~g~~p 215 (273)
T cd05035 151 TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL------AD---------RVYTSKSDVWAFGVTMWEIATRGQTP 215 (273)
T ss_pred eEEECCccceeeccccccccccccccCCccccCHhhc------cc---------CCCCcccchHHHHHHHHHHHhCCCCC
Confidence 46777 566665543321111123457899999998 33 557789999999999999999 77 8
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
|.+.....+. .+. ... .. .........+.+++.+||..+|.+||+..++.+.+.++
T Consensus 216 ~~~~~~~~~~~~~~-~~~-----~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 216 YPGVENHEIYDYLR-HGN-----RL---------------KQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred CCCCCHHHHHHHHH-cCC-----CC---------------CCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 8764333111 000 000 00 00011223478899999999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-12 Score=112.03 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=71.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.-|+- |++.|+-+- ++ -+.-.|-|+|||||.+- + .-+-+|+-++||||||++||||.||+ |
T Consensus 229 GniKlCDFGIsGrlvdS-kA--htrsAGC~~YMaPERid---------p---~~~~kYDiRaDVWSlGITlveLaTg~yP 293 (391)
T KOG0983|consen 229 GNIKLCDFGISGRLVDS-KA--HTRSAGCAAYMAPERID---------P---PDKPKYDIRADVWSLGITLVELATGQYP 293 (391)
T ss_pred CCEEeecccccceeecc-cc--cccccCCccccCccccC---------C---CCCCccchhhhhhhhccchhhhhcccCC
Confidence 345565 777665533 22 34578999999999881 1 11467888999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccc-hHHHHHhhhhccCCCCCcchhhH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFV-SLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
|.+-... ...+...+.+ .|..++. ...|. ...+++..||.+++..||.-..+
T Consensus 294 y~~c~td---------------Fe~ltkvln~-ePP~L~~--~~gFSp~F~~fv~~CL~kd~r~RP~Y~~L 346 (391)
T KOG0983|consen 294 YKGCKTD---------------FEVLTKVLNE-EPPLLPG--HMGFSPDFQSFVKDCLTKDHRKRPKYNKL 346 (391)
T ss_pred CCCCCcc---------------HHHHHHHHhc-CCCCCCc--ccCcCHHHHHHHHHHhhcCcccCcchHHH
Confidence 9984333 0000000010 1100000 01132 36778899999999999985443
|
|
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-11 Score=120.18 Aligned_cols=64 Identities=23% Similarity=0.418 Sum_probs=49.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+.... ....+||+.|||||++ .| ..++.++|+|||||++|+|++|+ |
T Consensus 141 ~~~kL~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~il~~l~~g~~p 201 (333)
T cd06650 141 GEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVEMAIGRYP 201 (333)
T ss_pred CCEEEeeCCcchhhhhhc----cccCCCCccccCHHHh------cC---------CCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 457887 5565554332 2357899999999999 44 45778999999999999999999 9
Q ss_pred cchhhh
Q 009274 89 FTKELI 94 (538)
Q Consensus 89 f~~~~~ 94 (538)
|.....
T Consensus 202 ~~~~~~ 207 (333)
T cd06650 202 IPPPDA 207 (333)
T ss_pred CCCcch
Confidence 986543
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-12 Score=123.47 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=62.9
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhhee-eccccccCcch
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIR-CVSTKASDDNI 109 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~-~~~~~~~~~~~ 109 (538)
.....||+.|||||++ .+ ..++.++|||||||+||+|++|+ ||......... .+.
T Consensus 187 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~-------- 243 (350)
T cd05573 187 ANSTVGTPDYIAPEVL------RG---------TPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKII-------- 243 (350)
T ss_pred ccccccCccccCHHHH------cC---------CCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHh--------
Confidence 3457899999999999 44 46789999999999999999999 99875433111 000
Q ss_pred hhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc-hhhHHH
Q 009274 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL-LTNVWK 160 (538)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~-~~~~~~ 160 (538)
. +.. ....+ ........+.+++.+||. +|.+|++ +.++..
T Consensus 244 -~------~~~-~~~~p--~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~ 284 (350)
T cd05573 244 -N------WKE-SLRFP--PDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKS 284 (350)
T ss_pred -c------cCC-cccCC--CCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhc
Confidence 0 000 00000 000012347789999997 9999999 666554
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-11 Score=118.73 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=74.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh--cC
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI--GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt--g~ 87 (538)
..+|+. |+++.+...+.........+++.|||||++ .+ ..++.++|||||||++|||++ |.
T Consensus 167 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~~l~el~~~~~~ 231 (296)
T cd05051 167 YTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESV------LL---------GKFTTKSDVWAFGVTLWEILTLCRE 231 (296)
T ss_pred CceEEccccceeecccCcceeecCcCCCCceecCHHHh------hc---------CCCCccchhhhhHHHHHHHHhcCCC
Confidence 456777 566665544322223356788999999998 32 467899999999999999998 55
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||.......+. ... .. ..................++.+++.+||+.+|.+||++.++.+.+
T Consensus 232 ~p~~~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L 294 (296)
T cd05051 232 QPYEHLTDQQVIENAG---------HF-----FRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFL 294 (296)
T ss_pred CCCCCcChHHHHHHHH---------hc-----cccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHh
Confidence 88754333111 000 00 000000000000011123488899999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-11 Score=117.27 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=77.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+...|++ |+++.+...+.........+++.|||||++ .+ ..++.++|||||||++|+|++ |.
T Consensus 168 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~~g~ 232 (293)
T cd05053 168 DHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL------FD---------RVYTHQSDVWSFGVLLWEIFTLGG 232 (293)
T ss_pred CCeEEeCccccccccccccceeccCCCCCCccccCHHHh------cc---------CCcCcccceeehhhHHHHHhcCCC
Confidence 3457888 555655443221112234567889999998 32 457789999999999999998 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+.. .... .............+.+++.+|+..+|.+||++.++.+.+..++
T Consensus 233 ~p~~~~~~~~~~~-----------------~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~ 292 (293)
T cd05053 233 SPYPGIPVEELFK-----------------LLKE---GYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML 292 (293)
T ss_pred CCCCCCCHHHHHH-----------------HHHc---CCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence 997653331110 0000 0000001112234778999999999999999999998877653
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-11 Score=110.00 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=80.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
|-+-|+. |+|++-... ..+.+.|=||.|.|||++ ...+|+..||+|||||++|-||+|.
T Consensus 200 na~lKLtDfGFAK~t~~~---~~L~TPc~TPyYvaPevl---------------g~eKydkscdmwSlgVimYIlLCGyP 261 (400)
T KOG0604|consen 200 NAPLKLTDFGFAKETQEP---GDLMTPCFTPYYVAPEVL---------------GPEKYDKSCDMWSLGVIMYILLCGYP 261 (400)
T ss_pred CcceEecccccccccCCC---ccccCCcccccccCHHHh---------------CchhcCCCCCccchhHHHHHhhcCCC
Confidence 4567888 788776632 227789999999999998 3467889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||....-..|- .....=.....+..+.++...+.+. ..++++++|..+|.+|.+..++..
T Consensus 262 PFYS~hg~ais-----pgMk~rI~~gqy~FP~pEWs~VSe~--------aKdlIR~LLkt~PteRlTI~~~m~ 321 (400)
T KOG0604|consen 262 PFYSNHGLAIS-----PGMKRRIRTGQYEFPEPEWSCVSEA--------AKDLIRKLLKTEPTERLTIEEVMD 321 (400)
T ss_pred cccccCCccCC-----hhHHhHhhccCccCCChhHhHHHHH--------HHHHHHHHhcCCchhheeHHHhhc
Confidence 99864221111 0000000112222222333333333 667999999999999999887765
|
|
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-11 Score=116.83 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=75.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++.+.............+++.|||||++ .+ ..++.++|||||||++|+|++ |.
T Consensus 177 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwslGvil~el~t~g~ 241 (302)
T cd05055 177 GKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESI------FN---------CVYTFESDVWSYGILLWEIFSLGS 241 (302)
T ss_pred CCeEEECCCcccccccCCCceeecCCCCcccccCCHhhh------cc---------CCCCcHhHHHHHHHHHHHHHhCCC
Confidence 3467887 455544433221112235678999999998 33 557789999999999999998 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHH-HHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||......... ....... ...........+.+++.+||..+|++||+..++...+.++
T Consensus 242 ~p~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~ 301 (302)
T cd05055 242 NPYPGMPVDSKF--------------------YKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred CCcCCCCchHHH--------------------HHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence 98754222000 0000000 0000001123478899999999999999999988876653
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-08 Score=102.40 Aligned_cols=214 Identities=10% Similarity=0.069 Sum_probs=133.6
Q ss_pred CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc--CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEe
Q 009274 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD--SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (538)
..|.+||.+ +...+.+..|...+.+.+|+|++..++++.. .+..|++||+.++... .+..... ......++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g-----~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG-----MTFAPRFS 254 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC-----cccCcEEC
Confidence 378889975 4555667778889999999998776655543 3468999999765432 1211111 11234789
Q ss_pred ecCCEEE-EeeCCCc--EEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec-CC--cEEEEECCCCceeEEEecC
Q 009274 350 TSGRYLY-TGSGDRT--IKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR-DG--TIRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 350 ~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~ 421 (538)
|||+.|+ +.+.++. |++||+.+++. ..+..+........|+ ++.++..+. +| .|+++|+.+++... +...
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~ 332 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFG 332 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecC
Confidence 9998665 5555554 78889887765 4455566666778898 446665553 33 58888987665433 3222
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCC---CcEEEEeCCc-ceeeecc-ccceEEEEEeCCCEEEEEeCC------CeEEEEe
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHES---GSIKVWRNDK-FMKSMQT-HKGSVFAVFLEGKWLFTGGWD------KTVSVQE 490 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~-~~~~~~~-h~~~v~~~~~~~~~l~sgs~d------g~v~iwd 490 (538)
.+... ...|+|+|+.|+..+.+ ..|.+||... ....+.. +...-.++++||+.|+..+.+ ..++++|
T Consensus 333 -~~~~~-~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 333 -GGRYS-TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred -CCccc-CeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 22222 25799999999877643 3577788532 2232221 111222345589988776543 2578888
Q ss_pred cCCCee
Q 009274 491 LAGDEF 496 (538)
Q Consensus 491 ~~~~~~ 496 (538)
+.++..
T Consensus 411 l~g~~~ 416 (435)
T PRK05137 411 LTGRNE 416 (435)
T ss_pred CCCCce
Confidence 877654
|
|
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-11 Score=117.63 Aligned_cols=119 Identities=14% Similarity=0.214 Sum_probs=79.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++.+.............+++.|||||++ .+ ..++.++||||||++||+|++ |.
T Consensus 174 ~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~~g~~ 238 (304)
T cd05101 174 NVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEAL------FD---------RVYTHQSDVWSFGVLMWEIFTLGGS 238 (304)
T ss_pred CcEEECCCccceecccccccccccCCCCCceeeCchhh------cc---------CCCCchhhHHHHHHHHHHHHcCCCC
Confidence 457787 666666544322223345678899999998 33 457789999999999999999 67
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. .+... . .. .........+.+++.+||..+|.+||+..++.+.+.++.
T Consensus 239 p~~~~~~~~~~~~~~~~---------~--------~~----~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~ 297 (304)
T cd05101 239 PYPGIPVEELFKLLKEG---------H--------RM----DKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRIL 297 (304)
T ss_pred CcccCCHHHHHHHHHcC---------C--------cC----CCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHH
Confidence 88765444211 00000 0 00 000112234778999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-12 Score=117.63 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=76.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++.+...... ......|+..|||||++ .+ ..++.++|||||||++|+|+| |.
T Consensus 138 ~~~~~L~dfg~~~~~~~~~~~-~~~~~~~~~~y~~PE~~------~~---------~~~~~~~DvwslG~~l~ellt~g~ 201 (262)
T cd05071 138 NLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAA------LY---------GRFTIKSDVWSFGILLTELTTKGR 201 (262)
T ss_pred CCcEEeccCCceeeccccccc-cccCCcccceecCHhHh------cc---------CCCCchhhHHHHHHHHHHHHcCCC
Confidence 3457887 556655543321 12245678899999988 33 567889999999999999999 77
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.. ....+. .. .....+.+++.+|++.+|.+||+..++...+...
T Consensus 202 ~p~~~~~~~~~~~~~~~---------~~~~~~----~~--------~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~ 260 (262)
T cd05071 202 VPYPGMVNREVLDQVER---------GYRMPC----PP--------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 260 (262)
T ss_pred CCCCCCChHHHHHHHhc---------CCCCCC----cc--------ccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence 99765443111 0000 000000 00 1112377899999999999999998888776553
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-12 Score=123.98 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=52.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+...... .....+||+.|||||++.... ....++.++|||||||+||+|++|+
T Consensus 178 ~~~ikL~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~l~~~~-----------~~~~~~~~~DiwSlGvilyell~G~~ 245 (371)
T cd05622 178 SGHLKLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEVLKSQG-----------GDGYYGRECDWWSVGVFLYEMLVGDT 245 (371)
T ss_pred CCCEEEEeCCceeEcCcCCcc-cccCcccCccccCHHHHhccC-----------CCccCCCccceeehhHHHHHHHhCCC
Confidence 3567888 666666543221 133578999999999992111 1134778999999999999999999
Q ss_pred ccchhhhh
Q 009274 88 QFTKELID 95 (538)
Q Consensus 88 pf~~~~~~ 95 (538)
||.+.+..
T Consensus 246 Pf~~~~~~ 253 (371)
T cd05622 246 PFYADSLV 253 (371)
T ss_pred CCCCCCHH
Confidence 99876443
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-12 Score=120.79 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=72.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... .....||+.|+|||++ .+ .....++.++|||||||++|+|++|+ |
T Consensus 145 ~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~------~~~~~~~~~~Di~slG~il~el~~g~~p 209 (288)
T cd06616 145 GNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERI------DP------SARDGYDVRSDVWSLGITLYEVATGKFP 209 (288)
T ss_pred CcEEEeecchhHHhccCCc---cccccCccCccCHHHh------cc------ccccCCcchhhhhHHHHHHHHHHhCCCC
Confidence 457777 55655443221 2346899999999998 32 00135778999999999999999999 9
Q ss_pred cchhhhh--heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID--YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|...... .+.... .... +.............+.+++.+||..+|++||+..++..
T Consensus 210 ~~~~~~~~~~~~~~~----------~~~~-------~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~ 266 (288)
T cd06616 210 YPKWNSVFDQLTQVV----------KGDP-------PILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLE 266 (288)
T ss_pred chhcchHHHHHhhhc----------CCCC-------CcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9764311 100000 0000 00000000111224778999999999999999887665
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-11 Score=116.55 Aligned_cols=120 Identities=20% Similarity=0.344 Sum_probs=75.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... ......|++.|||||++ .+ ..++.++|+||||+++|+|++|. |
T Consensus 143 ~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~ape~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~p 205 (267)
T cd08229 143 GVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERI------HE---------NGYNFKSDIWSLGCLLYEMAALQSP 205 (267)
T ss_pred CCEEECcchhhhccccCCc--ccccccCCcCccCHHHh------cC---------CCccchhhHHHHHHHHHHHHhCCCC
Confidence 346777 44444433321 23457899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
|.+....... ....+.....++... ......+.+++.+|+..+|++||+..++.+.+.++
T Consensus 206 ~~~~~~~~~~------~~~~~~~~~~~~~~~-----------~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 206 FYGDKMNLYS------LCKKIEQCDYPPLPS-----------DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred cccccchHHH------HhhhhhcCCCCCCCc-----------ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 9764332000 000000000000000 01122477899999999999999999888766554
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-12 Score=119.68 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=76.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+-+|+. |+++...............+++.|||||++ .+ ..++.++|||||||++|||++ |.
T Consensus 146 ~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~------~~---------~~~~~~~Di~slG~~l~el~t~g~~ 210 (279)
T cd05109 146 NHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESI------LH---------RRFTHQSDVWSYGVTVWELMTFGAK 210 (279)
T ss_pred CcEEECCCCceeecccccceeecCCCccchhhCCHHHh------cc---------CCCCchhHHHHHHHHHHHHHcCCCC
Confidence 347888 566665533222112234567899999998 33 557789999999999999998 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
||.......+..... . ..... ........+.+++.+||..+|++||+..++.+.+..+..
T Consensus 211 p~~~~~~~~~~~~~~--~------~~~~~------------~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~ 270 (279)
T cd05109 211 PYDGIPAREIPDLLE--K------GERLP------------QPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMAR 270 (279)
T ss_pred CCCCCCHHHHHHHHH--C------CCcCC------------CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 987543321110000 0 00000 000112236789999999999999999999887776653
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-11 Score=115.30 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=74.6
Q ss_pred eeeeeeccccccccccchhhh-hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 11 KSVAKVGCVGSRICDKEVGLF-LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..+|+.+++........... .....+++.|||||++ .+ ..++.++|||||||++|||++ |+
T Consensus 143 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~ell~~g~~ 207 (266)
T cd05064 143 DLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAI------QY---------HHFSSASDVWSFGIVMWEVMSYGER 207 (266)
T ss_pred CCcEEECCCcccccccccchhcccCCCCceeecCHHHH------hh---------CCccchhHHHHHHHHHHHHhcCCCC
Confidence 346778766533222211111 1134567899999998 33 567889999999999999775 99
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .++ . ....+ ........+.+++.+|++.+|.+||+..++.+.+.++
T Consensus 208 p~~~~~~~~~~~~~~---~------~~~~~------------~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 208 PYWDMSGQDVIKAVE---D------GFRLP------------APRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred CcCcCCHHHHHHHHH---C------CCCCC------------CCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 99765433111 000 0 00000 0011122477899999999999999999988766553
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-12 Score=135.28 Aligned_cols=95 Identities=23% Similarity=0.241 Sum_probs=65.6
Q ss_pred hhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhh
Q 009274 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (538)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (538)
..++||+.|||||++ .| ..+++++|||||||+||||+||+ ||.+.....+.... +
T Consensus 538 ~~~vGT~~Y~APE~l------~~---------~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~~~~~i---------l 593 (669)
T cd05610 538 ERILGTPDYLAPELL------LG---------KPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNI---------L 593 (669)
T ss_pred CceeeCccccCHHHc------CC---------CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---------H
Confidence 357999999999999 44 56789999999999999999999 99876444211000 0
Q ss_pred cchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
...+. +.. . .......+.+++.+||..+|.+||++.++.+
T Consensus 594 ~~~~~-~p~----~----~~~~~~~~~~~l~~lL~~dP~~R~ta~e~l~ 633 (669)
T cd05610 594 NRDIP-WPE----G----EEKLSVNAQNAIEILLTMDPTKRAGLKELKQ 633 (669)
T ss_pred hcCCC-CCc----c----cccCCHHHHHHHHHHcccChhHCcCHHHHHh
Confidence 00000 000 0 0011223677899999999999999888765
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-11 Score=117.59 Aligned_cols=123 Identities=12% Similarity=0.150 Sum_probs=80.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+.............+++.|||||++ .+ ..++.++|||||||+||||++ |+
T Consensus 146 ~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~------~~---------~~~~~~~Di~slGv~l~el~t~g~~ 210 (316)
T cd05108 146 QHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESI------LH---------RIYTHQSDVWSYGVTVWELMTFGSK 210 (316)
T ss_pred CcEEEccccccccccCCCcceeccCCccceeecChHHh------cc---------CCCCchhhhHHHHHHHHHHHcCCCC
Confidence 357888 667766544332112234557889999998 33 567789999999999999998 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
||.+.....+..... .. ... .........+.+++.+|+..+|..||+..++...+.++..
T Consensus 211 p~~~~~~~~~~~~~~--~~-----~~~-------------~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~ 270 (316)
T cd05108 211 PYDGIPASEISSILE--KG-----ERL-------------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 270 (316)
T ss_pred CCCCCCHHHHHHHHh--CC-----CCC-------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence 997653331110000 00 000 0001122347789999999999999999999988877764
Q ss_pred CC
Q 009274 168 KP 169 (538)
Q Consensus 168 ~~ 169 (538)
.+
T Consensus 271 ~~ 272 (316)
T cd05108 271 DP 272 (316)
T ss_pred CC
Confidence 43
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=116.11 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=74.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+...+.........||+.|+|||++ .+ ..+++++|||||||++|+|+| |.
T Consensus 156 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~t~g~~ 220 (277)
T cd05032 156 LTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL------KD---------GVFTTKSDVWSFGVVLWEMATLAEQ 220 (277)
T ss_pred CCEEECCcccchhhccCcccccCCCCCccccccCHHHH------hc---------CCCCcccchHHHHHHHHHhhccCCC
Confidence 457887 555655433221112346788999999998 32 557789999999999999998 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||.+.....+. .+. ... .. .. .......+.+++.+||..+|++||+..++...+
T Consensus 221 p~~~~~~~~~~~~~~-~~~-----~~-----------~~----~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l 275 (277)
T cd05032 221 PYQGLSNEEVLKFVI-DGG-----HL-----------DL----PENCPDKLLELMRMCWQYNPKMRPTFLEIVSSL 275 (277)
T ss_pred CCccCCHHHHHHHHh-cCC-----CC-----------CC----CCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHh
Confidence 99765444211 000 000 00 00 001122477899999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-11 Score=114.38 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=74.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++..... .....++..|||||++ ++ ..++.++|||||||++|+|++ |+
T Consensus 138 ~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~i~~~l~~~g~ 197 (256)
T cd05082 138 DNVAKVSDFGLTKEASST-----QDTGKLPVKWTAPEAL------RE---------KKFSTKSDVWSFGILLWEIYSFGR 197 (256)
T ss_pred CCcEEecCCccceecccc-----CCCCccceeecCHHHH------cc---------CCCCchhhhHHHHHHHHHHHhCCC
Confidence 3467888 455544432 2245667899999998 33 457789999999999999998 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .+. .. . ...........+.+++.+|+..+|++||+..++.+.+.+
T Consensus 198 ~p~~~~~~~~~~~~~~--~~------~-------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 255 (256)
T cd05082 198 VPYPRIPLKDVVPRVE--KG------Y-------------KMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEH 255 (256)
T ss_pred CCCCCCCHHHHHHHHh--cC------C-------------CCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence 98764333111 000 00 0 000001122347789999999999999999988876653
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-11 Score=115.52 Aligned_cols=116 Identities=15% Similarity=0.200 Sum_probs=73.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++....... ....+.|++.|+|||++ .+. ......++.++|+|||||++|+|++|. |
T Consensus 148 ~~~~l~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~------~~~----~~~~~~~~~~~Dv~slGv~l~el~~g~~p 215 (272)
T cd06637 148 AEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVI------ACD----ENPDATYDFKSDLWSLGITAIEMAEGAPP 215 (272)
T ss_pred CCEEEccCCCceecccccc--cCCcccccccccCHhHh------ccc----cCcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 55555443221 13458899999999998 220 001245778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh--hcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK--FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .. ........ .......+.+++.+||..+|.+||+..++.+
T Consensus 216 ~~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 216 LCDMHPMRAL----------------FL-----IPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred ccccCHHHHH----------------HH-----HhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence 9754333100 00 00000000 0011124778999999999999999877654
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-12 Score=117.66 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhh
Q 009274 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (538)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~ 96 (538)
|||=.+...+. .+.-+||++|||||++ . ++.|+...|-|||||+||||+.|+ ||...-..
T Consensus 332 GLAvei~~g~~---~~~rvGT~GYMAPEvl------~---------ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeK- 392 (591)
T KOG0986|consen 332 GLAVEIPEGKP---IRGRVGTVGYMAPEVL------Q---------NEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEK- 392 (591)
T ss_pred ceEEecCCCCc---cccccCcccccCHHHH------c---------CCcccCCccHHHHHhHHHHHHcccCchhhhhhh-
Confidence 78877776642 3345999999999999 3 367899999999999999999999 99864222
Q ss_pred eeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccc-hHHHHHhhhhccCCCCCcchh
Q 009274 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFV-SLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~p~~r~~~~ 156 (538)
.++.. +.+. +.+.+. ..+..|. +...+....|+++|.+|-...
T Consensus 393 -------vk~eE--vdrr-------~~~~~~-ey~~kFS~eakslc~~LL~Kdp~~RLGcr 436 (591)
T KOG0986|consen 393 -------VKREE--VDRR-------TLEDPE-EYSDKFSEEAKSLCEGLLTKDPEKRLGCR 436 (591)
T ss_pred -------hhHHH--HHHH-------Hhcchh-hcccccCHHHHHHHHHHHccCHHHhccCC
Confidence 00000 0000 000000 1112232 255677779999999997754
|
|
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=114.69 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=75.1
Q ss_pred eeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 12 SVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
..+|+. |+++.+....... ..+.-.+++.|||||++ .+ ..++.++|+|||||++|||++ |.
T Consensus 132 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~t~g~ 196 (257)
T cd05116 132 HYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECM------NY---------YKFSSKSDVWSFGVLMWEAFSYGQ 196 (257)
T ss_pred CeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHh------cc---------CCcCchhHHHHHHHHHHHHHhCCC
Confidence 457887 5566554332210 01223457899999998 32 456789999999999999998 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .+. . .. .++ .......++.+++.+|+..+|+.||+..++...+..
T Consensus 197 ~p~~~~~~~~~~~~i~---~------~~--------~~~----~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~ 254 (257)
T cd05116 197 KPYKGMKGNEVTQMIE---S------GE--------RME----CPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRN 254 (257)
T ss_pred CCCCCCCHHHHHHHHH---C------CC--------CCC----CCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence 99765333111 000 0 00 000 001123358889999999999999999988876554
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-11 Score=118.34 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh--cC
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI--GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt--g~ 87 (538)
..+|+. |+++...............+++.|||||++ .+ ..++.++|+|||||++|+|++ |.
T Consensus 166 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwSlG~~l~el~~~~~~ 230 (295)
T cd05097 166 YTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESI------LL---------GKFTTASDVWAFGVTLWEMFTLCKE 230 (295)
T ss_pred CcEEecccccccccccCcceeccCcCcCceeecChhhh------cc---------CCcCchhhHHHHHHHHHHHHHcCCC
Confidence 357888 455554433222112345678899999998 33 567899999999999999998 55
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||...+...+. .........................+.+++.+|++.+|++||+..++.+.+.
T Consensus 231 ~p~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 231 QPYSLLSDEQVI-------------ENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred CCCcccChHHHH-------------HHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 88764333111 0000000000000000001112235889999999999999999988876543
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-08 Score=91.55 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=139.4
Q ss_pred CCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC----ce----------EEEEecCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 252 RDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF----SH----------VHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 252 ~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~----~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
...|+|++|- +..|+.|... -|.+|..... .. +...++| .+|+++.|.+++..++-++-.|
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 4679999997 6778888755 5999986421 11 1222345 7899999999877665555568
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~ 392 (538)
..|.|||.+++........- ........++||+++|++++-|+..++|+..+...........+.|..-.|+ +
T Consensus 218 ssi~iWdpdtg~~~pL~~~g-----lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcG 292 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKG-----LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCG 292 (445)
T ss_pred ceEEEEcCCCCCcccccccC-----CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCC
Confidence 89999999987665444111 1223467899999999999999999999654432222222234588888998 4
Q ss_pred C-EEEEEecCCcEEEEECCCCce-------------eEEEec---CCC----CceEEEEEEcCCCCEEEEEeCCC-----
Q 009274 393 G-VLYSGSRDGTIRLWSLSDHSL-------------LTVLEE---DSS----GAVSSVLSLTAVQHTLVVSHESG----- 446 (538)
Q Consensus 393 ~-~l~s~s~dg~i~iwd~~~~~~-------------~~~~~~---~~~----~~~~~~~~~~~~~~~l~~~~~dg----- 446 (538)
. +|++++..-.++-........ +..+.. ... +.....++|.|.|.++++....+
T Consensus 293 sfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 293 SFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL 372 (445)
T ss_pred CEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh
Confidence 4 555555544443222211100 000000 000 11223479999999999876543
Q ss_pred ---cEEEEeCCc-ceeee------ccccceEEEEEe---CCCEEEEEeCCCeEEEEec
Q 009274 447 ---SIKVWRNDK-FMKSM------QTHKGSVFAVFL---EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 447 ---~i~iwd~~~-~~~~~------~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~ 491 (538)
.|.+||+++ +...+ .+......++.+ ++.+|..+=..|.+.-|++
T Consensus 373 ~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 373 CKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 356677554 22222 122223334444 5556666656677766665
|
|
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-11 Score=117.14 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=76.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+.............+++.|||||++ .+ ..++.++|+|||||++|+|++ |.
T Consensus 177 ~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~~l~el~~~g~~ 241 (307)
T cd05098 177 NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL------FD---------RIYTHQSDVWSFGVLLWEIFTLGGS 241 (307)
T ss_pred CcEEECCCcccccccccchhhccccCCCccceeChHHh------cc---------CCCCcHHHHHHHHHHHHHHHcCCCC
Confidence 457887 455554432211112223456899999998 43 457789999999999999999 77
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+.. ...... ...........+.+++.+||..+|.+||+..++.+.+..+.
T Consensus 242 p~~~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~ 300 (307)
T cd05098 242 PYPGVPVEELFK-----------------LLKEGH---RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 300 (307)
T ss_pred CCCcCCHHHHHH-----------------HHHcCC---CCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence 887654331110 000000 00000112234778999999999999999999998888765
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-10 Score=113.45 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=134.7
Q ss_pred CCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCC
Q 009274 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS 383 (538)
Q Consensus 304 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 383 (538)
.+..++.+..+..+.+||.........+...... ......+...+++.-++++|+.-+.|.+|+....+.-..+.+|.+
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceE-EEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 4456678888899999998754322221111000 001112234455555999999999999999874444446899999
Q ss_pred CeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe-CCcceeee
Q 009274 384 AVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR-NDKFMKSM 460 (538)
Q Consensus 384 ~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~ 460 (538)
.+.++.++ +.++++.|+|+++++|++.+.+........|...+.. +++.|+ .+++++.|-+.++|+ ..+.+..+
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~-~~~~~n--~i~t~gedctcrvW~~~~~~l~~y 253 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA-CCFLPN--RIITVGEDCTCRVWGVNGTQLEVY 253 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE-EEeccc--eeEEeccceEEEEEecccceehhh
Confidence 99999997 6699999999999999999988776333334455554 467776 899999999999997 44555677
Q ss_pred ccccc-eEEEEEe--CCCEEEEEeCCCeEEEEecCCC
Q 009274 461 QTHKG-SVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 461 ~~h~~-~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
..|.+ .+..+.. +...++|++.||.+++||+.+.
T Consensus 254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 88765 4566654 6778999999999999998643
|
|
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-11 Score=122.18 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=45.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
..+|+. |+++.............++||+.|||||++ .| ..++.++|||||||+||||++|.
T Consensus 297 ~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~------~~---------~~~~~~sDvwSlGviL~El~~g~ 359 (461)
T PHA03211 297 EDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVL------AG---------DPYTPSVDIWSAGLVIFEAAVHT 359 (461)
T ss_pred CCEEEcccCCceecccccccccccccCCCcCCcCHHHH------cC---------CCCCchHHHHHHHHHHHHHHHcC
Confidence 457888 566655433222223457899999999999 44 56789999999999999999987
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-09 Score=102.37 Aligned_cols=233 Identities=17% Similarity=0.142 Sum_probs=147.0
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
.+...-+.+..+|++..++++|..--.|++||+.... -.+..+.........-++-|-..++.-..|.+|-+...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 3667778999999999999999999999999987432 11222222122222222222223333344555544321
Q ss_pred CCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCc
Q 009274 370 LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS 447 (538)
Q Consensus 370 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 447 (538)
.|.. ..++ -...-.+++++ .--|++++....|+-+++..|..+..+..... ...++.+++...+|++|+.+|.
T Consensus 124 -~G~h-y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 124 -YGRH-YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred -cCee-eeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecCccceEEecccCce
Confidence 1111 0111 11233456666 23456666667899999999998888876532 2334688999999999999999
Q ss_pred EEEEeCCc--ceee------eccccc-----eEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCce
Q 009274 448 IKVWRNDK--FMKS------MQTHKG-----SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVI 512 (538)
Q Consensus 448 i~iwd~~~--~~~~------~~~h~~-----~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 512 (538)
|..||.+. .+.. +..|.+ .|+++.| +|-.+++|+.+|.|.|||++..+......|...+ .+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~----pi 274 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL----PI 274 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc----ce
Confidence 99999552 2222 222333 4899999 4789999999999999999998876655555433 34
Q ss_pred EEEEEe--C-CEEEEEECCCeEEEEEc
Q 009274 513 TALLYW--Q-GKLFVGCADRTVKVYYY 536 (538)
Q Consensus 513 ~~~~~~--~-~~l~sg~~dg~v~vw~~ 536 (538)
..+.|. + +.-++......++|||=
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWDE 301 (703)
T ss_pred eeecccccCCCceEEecchHHhhhccc
Confidence 444443 2 23455555668889974
|
|
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-11 Score=114.20 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+...+.+ ......++..|||||++ .+ ..++.++||||||+++|+|+| |+
T Consensus 139 ~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~Pe~~------~~---------~~~~~~~Di~slG~~l~el~t~g~~ 202 (260)
T cd05069 139 LVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAA------LY---------GRFTIKSDVWSFGILLTELVTKGRV 202 (260)
T ss_pred CeEEECCCccceEccCCccc-ccCCCccchhhCCHHHh------cc---------CCcChHHHHHHHHHHHHHHHhCCCC
Confidence 457887 555555433221 12235678899999988 33 557789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .+. ....+. ........+.+++.+||..+|.+||+..++.+.+..
T Consensus 203 p~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 203 PYPGMVNREVLEQVE---------RGYRMP------------CPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred CCCCCCHHHHHHHHH---------cCCCCC------------CCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 99875433111 000 000000 000112237889999999999999999888776653
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-11 Score=116.63 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=48.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... ......||+.|||||++ .+ ...++.++|||||||+||+|++|.
T Consensus 139 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~ 202 (303)
T cd07869 139 TGELKLADFGLARAKSVPSH--TYSNEVVTLWYRPPDVL------LG--------STEYSTCLDMWGVGCIFVEMIQGVA 202 (303)
T ss_pred CCCEEECCCCcceeccCCCc--cCCCCcccCCCCChHHH------cC--------CCCCCcHHHHHHHHHHHHHHHhCCC
Confidence 4567888 44544332221 24467899999999998 32 134677899999999999999999
Q ss_pred ccchh
Q 009274 88 QFTKE 92 (538)
Q Consensus 88 pf~~~ 92 (538)
||.+.
T Consensus 203 pf~~~ 207 (303)
T cd07869 203 AFPGM 207 (303)
T ss_pred CCCCC
Confidence 99763
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-11 Score=120.41 Aligned_cols=62 Identities=19% Similarity=0.460 Sum_probs=48.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++..... .+..+||+.|||||++ .+ ...++.++|||||||+||+|++|+ |
T Consensus 155 ~~~kl~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~p 215 (343)
T cd07878 155 CELRILDFGLARQADDE-----MTGYVATRWYRAPEIM------LN--------WMHYNQTVDIWSVGCIMAELLKGKAL 215 (343)
T ss_pred CCEEEcCCccceecCCC-----cCCccccccccCchHh------cC--------CccCCchhhhHhHHHHHHHHHHCCCC
Confidence 457888 566665543 3467899999999998 32 135678999999999999999999 9
Q ss_pred cchh
Q 009274 89 FTKE 92 (538)
Q Consensus 89 f~~~ 92 (538)
|.+.
T Consensus 216 f~~~ 219 (343)
T cd07878 216 FPGN 219 (343)
T ss_pred CCCC
Confidence 9764
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-11 Score=114.90 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=74.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+..... .....||+.|+|||++ .+ ...++.++|||||||++|+|++|. |
T Consensus 136 ~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slGv~l~el~~~~~p 198 (282)
T cd07831 136 DILKLADFGSCRGIYSKPP---YTEYISTRWYRAPECL------LT--------DGYYGPKMDIWAVGCVFFEILSLFPL 198 (282)
T ss_pred CCeEEEecccccccccCCC---cCCCCCCcccCChhHh------hc--------CCCCCcchhHHHHHHHHHHHHcCCcC
Confidence 678888 55665543321 3457899999999987 22 134678999999999999999999 9
Q ss_pred cchhhhhhe-eeccccccCcchhhcchhhHHHHHHH--------------HHHHhhhcCccchHHHHHhhhhccCCCCCc
Q 009274 89 FTKELIDYI-RCVSTKASDDNIACLGMYMAWMEKVT--------------YLLENKFGSEFVSLQLMFCQCLNFDPGCRP 153 (538)
Q Consensus 89 f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~ 153 (538)
|.+.+.... ..+... .......+..... .............+.+++.+||..+|.+||
T Consensus 199 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~ 271 (282)
T cd07831 199 FPGTNELDQIAKIHDV-------LGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERI 271 (282)
T ss_pred CCCCCHHHHHHHHHHH-------cCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCccccc
Confidence 976543211 100000 0000000000000 000000111233588899999999999999
Q ss_pred chhhHHH
Q 009274 154 LLTNVWK 160 (538)
Q Consensus 154 ~~~~~~~ 160 (538)
++.++.+
T Consensus 272 ~~~~~l~ 278 (282)
T cd07831 272 TAKQALR 278 (282)
T ss_pred CHHHHhh
Confidence 9877654
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.9e-12 Score=120.32 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=76.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++.+...+..-......+++.|||||++ .+ ..++.++|||||||++|+|++ |.
T Consensus 171 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwslG~~l~el~~~g~~ 235 (314)
T cd05099 171 NVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEAL------FD---------RVYTHQSDVWSFGILMWEIFTLGGS 235 (314)
T ss_pred CcEEEccccccccccccccccccccCCCCccccCHHHH------cc---------CCcCccchhhHHHHHHHHHHhCCCC
Confidence 456887 566655433211112223456789999998 33 557789999999999999999 77
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. .+... . .+ .........+.+++.+||..+|.+||+..++...+.++.
T Consensus 236 p~~~~~~~~~~~~~~~~-~----------------~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~ 294 (314)
T cd05099 236 PYPGIPVEELFKLLREG-H----------------RM----DKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVL 294 (314)
T ss_pred CCCCCCHHHHHHHHHcC-C----------------CC----CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence 99765433111 00000 0 00 000111224778999999999999999999888877764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-11 Score=114.39 Aligned_cols=135 Identities=20% Similarity=0.313 Sum_probs=88.1
Q ss_pred EEeeccceeeeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhh
Q 009274 2 ILVMGRRVTKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACI 79 (538)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~ 79 (538)
||++| +-+-|+| ||||.+..++ | .|+.+-|-+|.|||++ +. .+.|+.+.|+|++|||
T Consensus 141 iLi~~----~~~iKiaDFGLARev~Skp-P--YTeYVSTRWYRAPEvL---Lr-----------s~~Ys~pvD~wA~GcI 199 (538)
T KOG0661|consen 141 ILISG----NDVIKIADFGLAREVRSKP-P--YTEYVSTRWYRAPEVL---LR-----------SGYYSSPVDMWAVGCI 199 (538)
T ss_pred eEecc----cceeEecccccccccccCC-C--cchhhhcccccchHHh---hh-----------ccccCCchHHHHHHHH
Confidence 78888 4456899 9999999886 4 8899999999999999 22 3889999999999999
Q ss_pred hhhhhhcC-ccchhhhh-hee--e--ccccccCcchhhcchhhHHHHH----HHH----HHHhhhcCccchHHHHHhhhh
Q 009274 80 LLSLLIGE-QFTKELID-YIR--C--VSTKASDDNIACLGMYMAWMEK----VTY----LLENKFGSEFVSLQLMFCQCL 145 (538)
Q Consensus 80 l~~lltg~-pf~~~~~~-~~~--~--~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~l~~~~~~~l 145 (538)
++|+.+=+ =|++.+.- .|. | +-.+... .|..-..+... .|+ -...-.+....+..+++.++|
T Consensus 200 ~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~----~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll 275 (538)
T KOG0661|consen 200 MAELYSLRPLFPGASEIDQIYKICEVLGTPDKD----SWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLL 275 (538)
T ss_pred HHHHHHhcccCCCCcHHHHHHHHHHHhCCCccc----cchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHh
Confidence 99999999 67664322 222 1 0000000 00000000000 000 000111223344788999999
Q ss_pred ccCCCCCcchhhHHHH
Q 009274 146 NFDPGCRPLLTNVWKC 161 (538)
Q Consensus 146 ~~~p~~r~~~~~~~~~ 161 (538)
++||++||++.++.+.
T Consensus 276 ~WDP~kRpTA~~al~~ 291 (538)
T KOG0661|consen 276 AWDPDKRPTASQALQH 291 (538)
T ss_pred cCCCccCccHHHHhcC
Confidence 9999999998876653
|
|
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-12 Score=121.74 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=73.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+...... ......||+.|||||++...... ....++.++|||||||+||+|++|+ |
T Consensus 139 ~~~kL~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~---------~~~~~~~~~DiwslG~il~el~~g~~P 208 (330)
T cd05601 139 GHIKLADFGSAARLTANKMV-NSKLPVGTPDYIAPEVLTTMNGD---------GKGTYGVECDWWSLGVIAYEMIYGRSP 208 (330)
T ss_pred CCEEeccCCCCeECCCCCce-eeecccCCccccCHHHhcccccc---------ccCCCCCcceeecccceeeeeccCCCC
Confidence 467888 666666543322 23456899999999998211111 1345778999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .+. .... ... .+ ........+.+++.+||. +|.+||+..++..
T Consensus 209 f~~~~~~~~~~~i~--~~~~---~~~-----------~~--~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~ 262 (330)
T cd05601 209 FHEGTSAKTYNNIM--NFQR---FLK-----------FP--EDPKVSSDFLDLIQSLLC-GQKERLGYEGLCC 262 (330)
T ss_pred CCCCCHHHHHHHHH--cCCC---ccC-----------CC--CCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence 9865433111 000 0000 000 00 001112236778888997 9999999876543
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-09 Score=92.52 Aligned_cols=146 Identities=15% Similarity=0.199 Sum_probs=94.6
Q ss_pred EEEeecCCEEEEeeC----------CCcEEEEECCC-CceeEEec-CCCCCeEEEEEe--CCEE--EEEecCCcEEEEEC
Q 009274 346 HALTTSGRYLYTGSG----------DRTIKAWSLLD-GTLSCTMS-GHKSAVSTLAVC--NGVL--YSGSRDGTIRLWSL 409 (538)
Q Consensus 346 ~~~~~~~~~l~sg~~----------dg~i~iwd~~~-~~~~~~~~-~h~~~v~~l~~~--~~~l--~s~s~dg~i~iwd~ 409 (538)
+.++++|++|++-.. -+...+|.++. ...+..+. ...++|.+++|+ ++.+ +.|..++.|.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 356666764443322 12344454422 23344443 245579999999 3444 33556789999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC---CcEEEEeCCcceeeeccccceEEEEEe--CCCEEEEEeC--
Q 009274 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES---GSIKVWRNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGW-- 482 (538)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~-- 482 (538)
+ ++.+..+.. .... .+.|+|+|+++++++.+ |.+.+||.++.......+...+..+.| +|++|++++.
T Consensus 91 ~-~~~i~~~~~---~~~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 91 K-GKKIFSFGT---QPRN-TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred c-ccEeEeecC---CCce-EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 6 666666643 2223 36999999999998754 669999987644443333344556655 9999999874
Q ss_pred ----CCeEEEEecCCCee
Q 009274 483 ----DKTVSVQELAGDEF 496 (538)
Q Consensus 483 ----dg~v~iwd~~~~~~ 496 (538)
|+.++||+..+..+
T Consensus 166 r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ceeccccEEEEEecCeEe
Confidence 78899999976654
|
|
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-11 Score=113.82 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=75.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++...............+++.|||||++ .+ ..+++++||||||+++|+|++ |.
T Consensus 143 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~------~~---------~~~~~~~Dv~slG~~l~~l~~~g~~ 207 (266)
T cd05033 143 LVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAI------AY---------RKFTSASDVWSFGIVMWEVMSYGER 207 (266)
T ss_pred CCEEECccchhhcccccccceeccCCCCCccccChhhh------cc---------CCCccccchHHHHHHHHHHHccCCC
Confidence 456777 455655422222112234567899999998 33 457789999999999999998 98
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+. . ....+ ........+.+++.+|++.+|++||+..++.+.+.++
T Consensus 208 p~~~~~~~~~~~~~~---~-----~~~~~-------------~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 208 PYWDMSNQDVIKAVE---D-----GYRLP-------------PPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred CCCCCCHHHHHHHHH---c-----CCCCC-------------CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 99654333111 000 0 00000 0011223478899999999999999999998877654
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.5e-12 Score=117.13 Aligned_cols=108 Identities=18% Similarity=0.354 Sum_probs=69.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC--c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE--Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~--p 88 (538)
+.|+. |++....+. ..+.|++.|||||++ .+ ...++.++|||||||++|+|++|. |
T Consensus 146 ~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~~l~~g~~~~ 205 (258)
T cd05078 146 FIKLSDPGISITVLPK------EILLERIPWVPPECI------EN--------PQNLSLAADKWSFGTTLWEIFSGGDKP 205 (258)
T ss_pred eEEecccccccccCCc------hhccccCCccCchhc------cC--------CCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence 45666 444444332 247899999999998 32 134678999999999999999995 6
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
|....+.... .........+ ......+.+++.+||+.+|++||+..++.+.+
T Consensus 206 ~~~~~~~~~~------------------~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 206 LSALDSQKKL------------------QFYEDRHQLP----APKWTELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred hhhccHHHHH------------------HHHHccccCC----CCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 6554332000 0000000000 11223478899999999999999998887643
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-11 Score=129.90 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=66.4
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhhc
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (538)
.++||+.|||||++ .| ..++.++|||||||++|||+||+ ||.......+. ..
T Consensus 190 ~~vGT~~YmAPE~l------~g---------~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~------------~~ 242 (932)
T PRK13184 190 KIVGTPDYMAPERL------LG---------VPASESTDIYALGVILYQMLTLSFPYRRKKGRKIS------------YR 242 (932)
T ss_pred CCCCCCCCCCHHHh------cC---------CCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhh------------hh
Confidence 36899999999998 44 56788999999999999999999 99764333111 00
Q ss_pred chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch-hhHHHHHHHhh
Q 009274 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL-TNVWKCIRELI 166 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~-~~~~~~l~~l~ 166 (538)
........ . .........+.+++.+||+.+|.+|++. .++.+.+...+
T Consensus 243 ~~i~~P~~-~-----~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~l 291 (932)
T PRK13184 243 DVILSPIE-V-----APYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHL 291 (932)
T ss_pred hhccChhh-c-----cccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 00000000 0 0001122347789999999999999875 45656666654
|
|
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-11 Score=115.79 Aligned_cols=116 Identities=19% Similarity=0.339 Sum_probs=75.2
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++....... ......|++.|||||++ .+ ..++.++|+||||+++|+|++|+ ||
T Consensus 144 ~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~g~~p~ 206 (267)
T cd08228 144 VVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERI------HE---------NGYNFKSDIWSLGCLLYEMAALQSPF 206 (267)
T ss_pred CEEECccccceeccchhH--HHhcCCCCccccChhhh------cc---------CCCCchhhHHHHHHHHHHHhcCCCCC
Confidence 45666 44555543322 13457899999999998 32 44678999999999999999999 98
Q ss_pred chhhhh--hee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 90 TKELID--YIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 90 ~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
...... .+. .+. ....++..... ....+.+++.+|+..+|++||+..++.+.+.++
T Consensus 207 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~-----------~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~ 265 (267)
T cd08228 207 YGDKMNLFSLCQKIE---------QCDYPPLPTEH-----------YSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM 265 (267)
T ss_pred ccccccHHHHHHHHh---------cCCCCCCChhh-----------cCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence 654222 000 000 00000000000 112377899999999999999999998877664
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-08 Score=102.58 Aligned_cols=212 Identities=15% Similarity=0.144 Sum_probs=132.0
Q ss_pred CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcC--CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEe
Q 009274 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (538)
..|.+||... ...+.+..+...+.+.+|+|++..++++... +..|++||+.++... .+..... ......++
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g-----~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRG-----INGAPSFS 256 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCC-----CccCceEC
Confidence 3689999854 4455566677889999999987766555433 346999999765432 1111111 11234889
Q ss_pred ecCCEEE-EeeCCC--cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe-cCCc--EEEEECCCCceeEEEecC
Q 009274 350 TSGRYLY-TGSGDR--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS-RDGT--IRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 350 ~~~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~ 421 (538)
|+|+.++ +.+.+| .|++||+.+++.. .+..+.......+|+ ++.++.++ .++. |+++|+.+++...... .
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~ 334 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-Q 334 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-C
Confidence 9998665 445555 5999999887653 455555556678898 44666555 3444 7777777766433222 1
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCC---cEEEEeCCc-ceeeeccccceE--EEEEeCCCEEEEEeCC---CeEEEEecC
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHESG---SIKVWRNDK-FMKSMQTHKGSV--FAVFLEGKWLFTGGWD---KTVSVQELA 492 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~-~~~~~~~h~~~v--~~~~~~~~~l~sgs~d---g~v~iwd~~ 492 (538)
. . .....+|+|+|+.++..+.++ .|.+||... ....+. +.... .++++||++++..+.+ +.+.++++.
T Consensus 335 g-~-~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 335 G-N-YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred C-C-CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1 1 122368999999998765443 588999543 222332 22122 2445599988777653 457888886
Q ss_pred CCe
Q 009274 493 GDE 495 (538)
Q Consensus 493 ~~~ 495 (538)
+..
T Consensus 412 g~~ 414 (433)
T PRK04922 412 GRV 414 (433)
T ss_pred CCc
Confidence 654
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-11 Score=108.23 Aligned_cols=64 Identities=23% Similarity=0.553 Sum_probs=54.7
Q ss_pred eeeeeec--ccccccc-ccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 11 KSVAKVG--CVGSRIC-DKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
+++-|+. |+||.+. +.+. -|+.+-|-+|.|||.+ .| ..+|+...||||+||++.||++|+
T Consensus 137 ~gvvKLCDFGFAR~L~~pgd~---YTDYVATRWYRaPELL------vG--------DtqYG~pVDiWAiGCv~aEl~~G~ 199 (396)
T KOG0593|consen 137 NGVVKLCDFGFARTLSAPGDN---YTDYVATRWYRAPELL------VG--------DTQYGKPVDIWAIGCVFAELLTGE 199 (396)
T ss_pred CCcEEeccchhhHhhcCCcch---hhhhhhhhhccChhhh------cc--------cCcCCCcccchhhhHHHHHHhcCC
Confidence 5788998 8999998 4443 8899999999999999 44 468899999999999999999999
Q ss_pred -ccch
Q 009274 88 -QFTK 91 (538)
Q Consensus 88 -pf~~ 91 (538)
-|++
T Consensus 200 pL~PG 204 (396)
T KOG0593|consen 200 PLWPG 204 (396)
T ss_pred cCCCC
Confidence 4554
|
|
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-11 Score=112.10 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=75.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+.............+++.|+|||++ .+ ..++.++||||||+++|+|++ |.
T Consensus 142 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~~g~~ 206 (262)
T cd00192 142 LVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESL------KD---------GIFTSKSDVWSFGVLLWEIFTLGAT 206 (262)
T ss_pred CcEEEcccccccccccccccccccCCCcCccccCHHHh------cc---------CCcchhhccHHHHHHHHHHHhcCCC
Confidence 557887 455666544322223457889999999998 33 467789999999999999999 57
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||.......+. .+... . .. .........+.+++.+||..+|.+||++.++.+.+
T Consensus 207 p~~~~~~~~~~~~~~~~-~-----~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l 261 (262)
T cd00192 207 PYPGLSNEEVLEYLRKG-Y-----RL---------------PKPEYCPDELYELMLSCWQLDPEDRPTFSELVERL 261 (262)
T ss_pred CCCCCCHHHHHHHHHcC-C-----CC---------------CCCccCChHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 99875333111 00000 0 00 00001122477899999999999999998887643
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-11 Score=114.87 Aligned_cols=115 Identities=21% Similarity=0.199 Sum_probs=70.7
Q ss_pred eeeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+++ +++.....+.........+.+.|+|||.+ ++ ..++.++||||||+++|||++ |+
T Consensus 139 ~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~------~~---------~~~~~ksDVysfG~~l~ei~~~~~ 203 (259)
T PF07714_consen 139 NGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVL------KD---------GEYTKKSDVYSFGMLLYEILTLGK 203 (259)
T ss_dssp TTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHH------HH---------SEESHHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccccccccccccccccccccccccc------cc---------cccccccccccccccccccccccc
Confidence 46789984 45555222222223457788999999998 32 447799999999999999999 67
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||.......+. +.+....... .......+.+++.+|++.+|.+||+..++.+.
T Consensus 204 ~p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~ 258 (259)
T PF07714_consen 204 FPFSDYDNEEII---------------------EKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQE 258 (259)
T ss_dssp GTTTTSCHHHHH---------------------HHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH
T ss_pred cccccccccccc---------------------ccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhc
Confidence 98765333111 0000000000 01112237789999999999999999888764
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-11 Score=114.52 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=77.8
Q ss_pred eeeeec--cccccccccchhhhh-hhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFL-SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~-~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
...|+. |+++........... ....++..|||||++ .+ ..+++++||||||+++|+|+||.
T Consensus 144 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~------~~---------~~~~~~~Di~slG~~l~el~tg~~ 208 (283)
T cd05080 144 RLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECL------KE---------NKFSYASDVWSFGVTLYELLTHCD 208 (283)
T ss_pred CcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHh------cc---------cCCCcccccHHHHHHHHHHHhCCC
Confidence 467887 566665543321111 224567789999998 33 45778999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||..........+...... .....+........... .......+.+++.+|++.+|.+||+..++...+..+
T Consensus 209 p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~ 281 (283)
T cd05080 209 SKQSPPKKFEEMIGPKQGQ------MTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281 (283)
T ss_pred CCCCCcchhhhhhcccccc------cchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence 9865432210000000000 00000000000000000 011234588999999999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-11 Score=116.22 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=74.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh--cC
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI--GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt--g~ 87 (538)
..+|+. |+++.+.............+++.|||||+. .+ +.++.++|+|||||+||||++ |.
T Consensus 167 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~------~~---------~~~~~~~DiwSlG~~l~el~~~~~~ 231 (296)
T cd05095 167 YTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESI------LL---------GKFTTASDVWAFGVTLWEILTLCKE 231 (296)
T ss_pred CCEEeccCcccccccCCcceeccCcCcCccccCCHHHH------hc---------CCccchhhhhHHHHHHHHHHHhCCC
Confidence 456777 556655433211112235567899999987 33 567889999999999999998 56
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.......+. .........................+.+++.+||..+|.+||++.++.+.+.
T Consensus 232 ~p~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 232 QPYSQLSDEQVI-------------ENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred CCccccChHHHH-------------HHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 88765433111 0000000000000000000112234788999999999999999998877553
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-09 Score=104.25 Aligned_cols=211 Identities=15% Similarity=0.118 Sum_probs=132.6
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCC---CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC--cEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFD---KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG--GIF 318 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~ 318 (538)
..+..|...+.+.+|+ ++.|+..+.+ ..|.+||+.+++... +..+.+...+..|+|++..++++.+.+| .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677789999998 8888887743 469999998876543 3344455568899998888877777666 588
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-CCc--EEEEECCCCceeEEecCCCCCeEEEEEe--CC
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRT--IKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG 393 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 393 (538)
+||+.++.... ...+.. .....++++||+.++..+. +|. |+++|+.+++... +..+.......+|+ ++
T Consensus 276 ~~d~~~g~~~~----lt~~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 276 VMDLGSRQLTR----LTNHFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGK 348 (433)
T ss_pred EEECCCCCeEE----CccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCC
Confidence 99987654221 111111 1123478999998877664 444 7777877765433 22233444567888 45
Q ss_pred EEEEEecCC---cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC---CcEEEEeCC-cceeeeccccce
Q 009274 394 VLYSGSRDG---TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES---GSIKVWRND-KFMKSMQTHKGS 466 (538)
Q Consensus 394 ~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~-~~~~~~~~h~~~ 466 (538)
.++..+.++ .|.+||+.+++.. .+.... ... ...|+|||++++..+.+ +.+.+++.. .....+..+.+.
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~--~~~-~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~ 424 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS--LDE-SPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGE 424 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECCCCC--CCC-CceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCC
Confidence 666654433 6999999887754 333221 112 25899999988876653 356667753 334444434333
Q ss_pred EE
Q 009274 467 VF 468 (538)
Q Consensus 467 v~ 468 (538)
+.
T Consensus 425 ~~ 426 (433)
T PRK04922 425 VR 426 (433)
T ss_pred CC
Confidence 33
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-08 Score=89.67 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=142.3
Q ss_pred CCCcEEEEeCCCCceEEEEecCC--cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEE
Q 009274 270 FDKSIHVWSLKDFSHVHTFKGHD--HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA 347 (538)
Q Consensus 270 ~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (538)
.+|+|..||..+|+.+....... ....+... ++++ .+++++.++.+..||..+++............. .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-------~ 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-------A 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-------G
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccc-------e
Confidence 37899999999999999886411 22221122 2234 556668999999999988764433333111111 1
Q ss_pred EeecCCEEEEeeCCCcEEEEECCCCceeEEe-cCCC-----CCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 009274 348 LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM-SGHK-----SAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 348 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~-----~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 421 (538)
...++..+++++.++.++.+|..+|+.++.. .... .......+.++.++.+..++.|..+|+++|+.+......
T Consensus 72 ~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 72 PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 2344667777788899999999999999984 3221 122334445889999999999999999999998888764
Q ss_pred CCCce---------EEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeeccccceEEE-EEeCCCEEEEEeCCCeEEEEec
Q 009274 422 SSGAV---------SSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFA-VFLEGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 422 ~~~~~---------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~-~~~~~~~l~sgs~dg~v~iwd~ 491 (538)
..... ... ....++ .++.++.++.+..+|..+....+......... ...++..|+.++.++.+..||+
T Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGS-PVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp TT-SS--EEEETTEEEE-EECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred CCCCCcceeeecccccc-eEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 32211 111 222234 77777778764444866543323322333444 4558888888889999999999
Q ss_pred CCCeeEee
Q 009274 492 AGDEFEED 499 (538)
Q Consensus 492 ~~~~~~~~ 499 (538)
++++..+.
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 99987653
|
... |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-11 Score=119.08 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=75.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++...... ........||+.|||||++ .| ...++.++|||||||++|||++|+
T Consensus 139 ~~~~kL~Dfg~a~~~~~~~-~~~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~ 203 (372)
T cd07853 139 NCVLKICDFGLARVEEPDE-SKHMTQEVVTQYYRAPEIL------MG--------SRHYTSAVDIWSVGCIFAELLGRRI 203 (372)
T ss_pred CCCEEeccccceeecccCc-cccCCCCCcCCCcCCHHHH------cC--------CCCCCcHHHHHhHHHHHHHHHcCCC
Confidence 3567888 5565544332 1224457899999999998 33 234678999999999999999999
Q ss_pred ccchhhhhhee-ecc-ccccCcchhhc-chhhHHHHHHHHHHH---------hhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIR-CVS-TKASDDNIACL-GMYMAWMEKVTYLLE---------NKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.+..+.... .+. ...... ...+ .........+...+. .........+.+++.+||..+|.+||++
T Consensus 204 pf~~~~~~~~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~ 282 (372)
T cd07853 204 LFQAQSPIQQLDLITDLLGTPS-LEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISA 282 (372)
T ss_pred CCCCCCHHHHHHHHHHHcCCCC-HHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCH
Confidence 99875443111 000 000000 0000 000000000000000 0001112347789999999999999998
Q ss_pred hhHHH
Q 009274 156 TNVWK 160 (538)
Q Consensus 156 ~~~~~ 160 (538)
.++.+
T Consensus 283 ~e~l~ 287 (372)
T cd07853 283 ADALA 287 (372)
T ss_pred HHHhc
Confidence 87654
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-11 Score=110.46 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=79.4
Q ss_pred eec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccch
Q 009274 15 KVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (538)
Q Consensus 15 ~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~ 91 (538)
|+. ||||-....+..-++|+.+-|-+|.|||++ .. ...|+.+.||||+||||.|||+|+ =|.+
T Consensus 165 KI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPEll------l~--------~~~Yt~aiDiWSvGCI~AEmL~gkplFpG 230 (359)
T KOG0660|consen 165 KICDFGLARYLDKFFEDGFMTEYVATRWYRAPELL------LN--------SSEYTKAIDIWSVGCILAEMLTGKPLFPG 230 (359)
T ss_pred EeccccceeeccccCcccchhcceeeeeecCHHHH------hc--------cccccchhhhhhhhHHHHHHHcCCCCCCC
Confidence 777 999999754455568999999999999998 11 256889999999999999999999 6666
Q ss_pred hhhh----heee-ccccccCcchhhcchhhHHHHHHHHHH---Hh----hhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 92 ELID----YIRC-VSTKASDDNIACLGMYMAWMEKVTYLL---EN----KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 92 ~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
...- .|.. +-++.... +.... ....+..+...+ .. ..+...+..-+++.++|.++|.+|+++++..
T Consensus 231 ~d~v~Ql~lI~~~lGtP~~e~-l~~i~-s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL 308 (359)
T KOG0660|consen 231 KDYVHQLQLILELLGTPSEED-LQKIR-SEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEAL 308 (359)
T ss_pred CchHHHHHHHHHhcCCCCHHH-HHHhc-cHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHh
Confidence 3222 1111 00000000 00000 000011111111 00 1112223356788999999999999988765
Q ss_pred H
Q 009274 160 K 160 (538)
Q Consensus 160 ~ 160 (538)
.
T Consensus 309 ~ 309 (359)
T KOG0660|consen 309 A 309 (359)
T ss_pred c
Confidence 4
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.9e-09 Score=93.05 Aligned_cols=241 Identities=15% Similarity=0.272 Sum_probs=152.6
Q ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc-----eEEEEecCC------------cCeEEEEEecCC-CCEEEEE
Q 009274 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-----HVHTFKGHD------------HKVMAVVYVDED-QPLCISG 311 (538)
Q Consensus 252 ~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~-~~~l~s~ 311 (538)
.+-|.++.|. |++|+||..+|.|.++.-+... ....++.|. ..|..+.|.+++ ...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678899998 9999999999999999643222 233444454 468889998654 4567778
Q ss_pred cCCCcEEEEEccCCCCCc---------------c--eee---------------ecccCCceeeeEEEEeecCCEEEEee
Q 009274 312 DSGGGIFVWSFSFPLGHE---------------P--LKK---------------WNEEKDWRYSGIHALTTSGRYLYTGS 359 (538)
Q Consensus 312 ~~dg~i~vwd~~~~~~~~---------------~--~~~---------------~~~~~~~~~~~~~~~~~~~~~l~sg~ 359 (538)
+.|.+|++|.+....... . +.. +...+..+.. ..++..|+..++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN-SIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN-SISVNSDKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee-eeeecCccceEeec-
Confidence 899999999886432221 0 000 0011111111 12444455566665
Q ss_pred CCCcEEEEECCCCce---eEEecCCC-----CCeEEEEEe---CCEEEEEecCCcEEEEECCCCcee----EEEecCCCC
Q 009274 360 GDRTIKAWSLLDGTL---SCTMSGHK-----SAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLL----TVLEEDSSG 424 (538)
Q Consensus 360 ~dg~i~iwd~~~~~~---~~~~~~h~-----~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~ 424 (538)
+|=.|.+|++.--.. +..++.+. .-|++-.|+ -+.++-.+..|+|++-|++...+- ..+.....+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 567899999863221 22233332 357788888 458888888999999999954321 111111000
Q ss_pred ----------ceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccc------------eE---EEEEe--CC
Q 009274 425 ----------AVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKG------------SV---FAVFL--EG 474 (538)
Q Consensus 425 ----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~------------~v---~~~~~--~~ 474 (538)
...+-+.|+++|+++++-+. -+|++||.. +++.+++.|.. .| ..++| ++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 01122689999999988654 489999953 46666666642 22 23456 55
Q ss_pred CEEEEEeCCCeEEEEecCCCe
Q 009274 475 KWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~~~~~ 495 (538)
.+++||+....++++++..+.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 599999999999999976543
|
|
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-11 Score=118.12 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=77.3
Q ss_pred eeeeeecccc--ccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVGCVG--SRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
.++-|++.+| +.+.+.. +|+|||.|||||+| .-. -.|.|+-+.||||||+++.||.--+
T Consensus 162 ~g~VKLaDFGSAsi~~PAn------sFvGTPywMAPEVI------LAM------DEGqYdgkvDvWSLGITCIELAERkP 223 (948)
T KOG0577|consen 162 PGLVKLADFGSASIMAPAN------SFVGTPYWMAPEVI------LAM------DEGQYDGKVDVWSLGITCIELAERKP 223 (948)
T ss_pred CCeeeeccccchhhcCchh------cccCCccccchhHh------eec------cccccCCccceeeccchhhhhhhcCC
Confidence 4677888554 4555442 69999999999999 221 1478999999999999999999988
Q ss_pred ccchh-hhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 QFTKE-LIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 pf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|+-.. ....+. +|.-...+....+..+..+. .++..||.+-|..||+++++.+.
T Consensus 224 PlFnMNAMSALY---------HIAQNesPtLqs~eWS~~F~-----------~Fvd~CLqKipqeRptse~ll~H 278 (948)
T KOG0577|consen 224 PLFNMNAMSALY---------HIAQNESPTLQSNEWSDYFR-----------NFVDSCLQKIPQERPTSEELLKH 278 (948)
T ss_pred CccCchHHHHHH---------HHHhcCCCCCCCchhHHHHH-----------HHHHHHHhhCcccCCcHHHHhhc
Confidence 64433 222222 01122222222344444444 48888999999999999987764
|
|
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-11 Score=121.25 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=51.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+...... .....+||+.|||||++.... ....++.++|+|||||+||+|++|+ |
T Consensus 179 ~~~kL~DFG~a~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~-----------~~~~~~~~~DiwSlG~ilyell~G~~P 246 (370)
T cd05621 179 GHLKLADFGTCMKMDETGMV-RCDTAVGTPDYISPEVLKSQG-----------GDGYYGRECDWWSVGVFLFEMLVGDTP 246 (370)
T ss_pred CCEEEEecccceecccCCce-ecccCCCCcccCCHHHHhccC-----------CCCCCCcccCEEeehHHHHHHHhCCCC
Confidence 567888 566665433211 123678999999999992111 1134778999999999999999999 9
Q ss_pred cchhhhh
Q 009274 89 FTKELID 95 (538)
Q Consensus 89 f~~~~~~ 95 (538)
|.+.+..
T Consensus 247 f~~~~~~ 253 (370)
T cd05621 247 FYADSLV 253 (370)
T ss_pred CCCCCHH
Confidence 9876443
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-11 Score=116.92 Aligned_cols=112 Identities=19% Similarity=0.296 Sum_probs=72.5
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+.+ +++.+...... .....|++.|||||++ .+ ..++.++|+|||||++|+|+||+ |
T Consensus 138 ~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~el~tg~~p 200 (277)
T cd06642 138 GDVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVI------KQ---------SAYDFKADIWSLGITAIELAKGEPP 200 (277)
T ss_pred CCEEEccccccccccCcchh--hhcccCcccccCHHHh------Cc---------CCCchhhhHHHHHHHHHHHHhCCCC
Confidence 4577874 45555433221 2346899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....+....... . ... .+.. ......++.+++.+||..+|++||++.++..
T Consensus 201 ~~~~~~~~~~~~~---~-----~~~-~~~~-----------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06642 201 NSDLHPMRVLFLI---P-----KNS-PPTL-----------EGQYSKPFKEFVEACLNKDPRFRPTAKELLK 252 (277)
T ss_pred CcccchhhHHhhh---h-----cCC-CCCC-----------CcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence 8754333111000 0 000 0000 0011223778999999999999999888765
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-11 Score=116.50 Aligned_cols=117 Identities=19% Similarity=0.341 Sum_probs=73.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+.+.. .+..+||+.|+|||++ .+ ..++.++|+|||||++|+|++|+
T Consensus 131 ~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~~l~~l~~g~~ 191 (279)
T cd06619 131 RGQVKLCDFGVSTQLVNSI----AKTYVGTNAYMAPERI------SG---------EQYGIHSDVWSLGISFMELALGRF 191 (279)
T ss_pred CCCEEEeeCCcceeccccc----ccCCCCChhhcCceee------cC---------CCCCCcchHHHHHHHHHHHHhCCC
Confidence 3457888 4555544332 3457999999999998 33 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh--cCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF--GSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||........ .. ................. ......+.+++.+||..+|.+||+..++.+
T Consensus 192 pf~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~ 252 (279)
T cd06619 192 PYPQIQKNQG-------------SL-MPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMD 252 (279)
T ss_pred Cchhhccccc-------------cc-chHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 9976322200 00 00000000000000000 112234788999999999999999877654
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-11 Score=116.43 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=73.6
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.+ +++.+..... ......|+..|+|||++ .+ ..++.++|+|||||++|+|+||. |
T Consensus 138 ~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~apE~~------~~---------~~~~~~~Dv~slG~il~el~tg~~p 200 (277)
T cd06640 138 GDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVI------QQ---------SAYDSKADIWSLGITAIELAKGEPP 200 (277)
T ss_pred CCEEEcccccceeccCCcc--ccccccCcccccCHhHh------cc---------CCCccHHHHHHHHHHHHHHHHCCCC
Confidence 3467774 4555543322 13346799999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|....+....... . ... ++...+ ..+ .++.+++.+||..+|.+||+..++..+
T Consensus 201 ~~~~~~~~~~~~~---~-----~~~-~~~~~~---~~~--------~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06640 201 NSDMHPMRVLFLI---P-----KNN-PPTLTG---EFS--------KPFKEFIDACLNKDPSFRPTAKELLKH 253 (277)
T ss_pred CCCcChHhHhhhh---h-----cCC-CCCCch---hhh--------HHHHHHHHHHcccCcccCcCHHHHHhC
Confidence 9875444211000 0 000 000001 011 237789999999999999998887653
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=121.71 Aligned_cols=224 Identities=13% Similarity=0.183 Sum_probs=155.5
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
.+-..|.++.-+|... +.++|+.||.+++|....+......+.... ....-..++.+|+.+..+..||.+.+|.+
T Consensus 2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred cccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCc----chhhhhhhcccCCceeeeccCCceeeccc
Confidence 3445677777677555 558999999999999887655444333222 12223467788999999999999999998
Q ss_pred CCCceeEEecCCCCCeEEEEEeCCEEEEEe---cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 370 LDGTLSCTMSGHKSAVSTLAVCNGVLYSGS---RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 370 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
. .++....+.|.....++.|-+..+++++ .++.+.+||..-.....-+...|.+.. +++++-|..+.|++|+.+|
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga-T~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA-TVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred C-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCc-eEEEEcCcceEEEecCCcC
Confidence 6 6777778889999999999887777764 578899999754322222222233333 3479999999999999999
Q ss_pred cEEEEeCCc--ceeeeccccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCc-----eEEEEEeC
Q 009274 447 SIKVWRNDK--FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSV-----ITALLYWQ 519 (538)
Q Consensus 447 ~i~iwd~~~--~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 519 (538)
.|++||.++ ..+.++. +. ...++++|+..|.++||++.............. +... ...-.-..
T Consensus 2359 ~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~a--k~gfFr~~g~Q~~v~~~ 2428 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHA--KQGFFRNIGMQINVGQC 2428 (2439)
T ss_pred cEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhc--ccchhhhcCceeeeccC
Confidence 999999764 3333333 33 677999999999999999988755443333221 1111 11111236
Q ss_pred CEEEEEECCCe
Q 009274 520 GKLFVGCADRT 530 (538)
Q Consensus 520 ~~l~sg~~dg~ 530 (538)
++|++|+.||+
T Consensus 2429 nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2429 NRIFSCGADGT 2439 (2439)
T ss_pred ceEEEecCCCC
Confidence 78999999874
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-11 Score=120.97 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=40.8
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID 95 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~ 95 (538)
..+||+.|||||++ .+ ..++.++|||||||+||||+||+ ||...++.
T Consensus 195 ~~~gt~~Y~APE~~------~~---------~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~ 242 (360)
T cd05627 195 STVGTPDYIAPEVF------MQ---------TGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ 242 (360)
T ss_pred ccCCCccccCHHHH------cC---------CCCCCcceeccccceeeecccCCCCCCCCCHH
Confidence 46899999999998 43 56788999999999999999999 99876544
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-12 Score=115.95 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=64.8
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchh
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (538)
...++||-+|+|||++ +| ...+.+.|-|+||+.|||||.|. ||-+.+....+. |++
T Consensus 292 SnSFVGThEYlAPEvI------~G---------~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~--------NIv 348 (459)
T KOG0610|consen 292 SNSFVGTHEYLAPEVI------RG---------EGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLR--------NIV 348 (459)
T ss_pred ccccccccccccceee------ec---------CCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHH--------HHh
Confidence 3369999999999999 76 55678999999999999999999 999976553331 111
Q ss_pred hcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
...+ .. |.. +.....+.++|++.|.++|.+|....
T Consensus 349 ~~~l-~F-----p~~-----~~vs~~akDLIr~LLvKdP~kRlg~~ 383 (459)
T KOG0610|consen 349 GQPL-KF-----PEE-----PEVSSAAKDLIRKLLVKDPSKRLGSK 383 (459)
T ss_pred cCCC-cC-----CCC-----CcchhHHHHHHHHHhccChhhhhccc
Confidence 1100 00 000 01122378899999999999998843
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-08 Score=100.62 Aligned_cols=212 Identities=9% Similarity=0.101 Sum_probs=126.0
Q ss_pred CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC--CcEEEEEccCCCCCcceeeecccCCceeeeEEEEe
Q 009274 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (538)
..|.++|. ++.....+..+...+.+.+|+|++..++++...+ ..|.+||+.++... .+..... ......++
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g-----~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKG-----SNSAPAWS 248 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCC-----CccceEEC
Confidence 35777776 3455555667788899999999887665555433 45999999866432 1211111 11245899
Q ss_pred ecCCEEE-EeeCCCcEEEEE--CCCCceeEEecCCCCCeEEEEEe--CCEEEEEe-cCCcEEEEEC--CCCceeEEEecC
Q 009274 350 TSGRYLY-TGSGDRTIKAWS--LLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS-RDGTIRLWSL--SDHSLLTVLEED 421 (538)
Q Consensus 350 ~~~~~l~-sg~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~--~~~~~~~~~~~~ 421 (538)
|||+.|+ +.+.+|...+|. +.++. ...+..+........|+ +..++..+ .++...+|.+ .+++.. .+...
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~ 326 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT 326 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC
Confidence 9999776 567777766654 44444 44555555556778898 44565544 3566666654 444432 22221
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCC---cEEEEeCCc-ceeeeccc-cceEEEEEeCCCEEEEEeCCC---eEEEEecCC
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHESG---SIKVWRNDK-FMKSMQTH-KGSVFAVFLEGKWLFTGGWDK---TVSVQELAG 493 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~-~~~~~~~h-~~~v~~~~~~~~~l~sgs~dg---~v~iwd~~~ 493 (538)
... .....|+|+|++++..+.++ .|.+||... ....+..+ ...-.++++||+.|+.++.++ .+.+.++.+
T Consensus 327 -g~~-~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 327 -GSY-NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred -CCC-cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 111 12258999999998777654 589999543 22333221 122234455999888877654 355556644
Q ss_pred C
Q 009274 494 D 494 (538)
Q Consensus 494 ~ 494 (538)
.
T Consensus 405 ~ 405 (427)
T PRK02889 405 R 405 (427)
T ss_pred C
Confidence 3
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-11 Score=113.95 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=44.5
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhhee
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIR 98 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~ 98 (538)
++++||||.|||||++ +-..|+...|-||+||+|||||.|+ ||++++...+.
T Consensus 507 TkTFCGTPdYiAPEIi---------------~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF 559 (683)
T KOG0696|consen 507 TKTFCGTPDYIAPEII---------------AYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELF 559 (683)
T ss_pred eeeecCCCcccccceE---------------EecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence 6789999999999998 2246778899999999999999999 99998666333
|
|
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-11 Score=116.36 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=77.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.+.............+++.|||||++ .+ ..++.++|||||||+||+|++ |.
T Consensus 171 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~~g~~ 235 (334)
T cd05100 171 NVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL------FD---------RVYTHQSDVWSFGVLLWEIFTLGGS 235 (334)
T ss_pred CcEEECCcccceecccccccccccCCCcCceEcCHHHh------cc---------CCcCchhhhHHHHHHHHHHHhcCCC
Confidence 457887 566655443221112234556789999998 33 457789999999999999999 77
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. .+... . .+ .........+.+++.+|+..+|.+||+..++...+.++.
T Consensus 236 p~~~~~~~~~~~~~~~~-~----------------~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~ 294 (334)
T cd05100 236 PYPGIPVEELFKLLKEG-H----------------RM----DKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL 294 (334)
T ss_pred CCCCCCHHHHHHHHHcC-C----------------CC----CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence 99765433111 00000 0 00 000011224778999999999999999999999888765
Q ss_pred c
Q 009274 167 I 167 (538)
Q Consensus 167 ~ 167 (538)
.
T Consensus 295 ~ 295 (334)
T cd05100 295 T 295 (334)
T ss_pred h
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-11 Score=115.90 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=70.1
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
-.|+. |+++.+..... ......||+.|||||++... ....++.++|+|||||++|+|++|. ||
T Consensus 144 ~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~------------~~~~~~~~~DvwSlG~il~~l~~~~~p~ 209 (267)
T cd06645 144 HVKLADFGVSAQITATIA--KRKSFIGTPYWMAPEVAAVE------------RKGGYNQLCDIWAVGITAIELAELQPPM 209 (267)
T ss_pred CEEECcceeeeEccCccc--ccccccCcccccChhhhccc------------cCCCCCchhhhHHHHHHHHHHhcCCCCc
Confidence 35666 55555443221 13457899999999998111 1245778999999999999999999 88
Q ss_pred chhhhhh-eeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDY-IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
....+.. +..... .. .. +..... . ......+.+++.+||+.+|++||+..++..
T Consensus 210 ~~~~~~~~~~~~~~-~~-----~~--~~~~~~-~--------~~~~~~~~~li~~~l~~~P~~R~~~~~ll~ 264 (267)
T cd06645 210 FDLHPMRALFLMTK-SN-----FQ--PPKLKD-K--------MKWSNSFHHFVKMALTKNPKKRPTAEKLLQ 264 (267)
T ss_pred ccccchhhHHhhhc-cC-----CC--CCcccc-c--------CCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence 6543221 110000 00 00 000000 0 001123678999999999999999876543
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-11 Score=113.06 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=64.7
Q ss_pred cccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-ccchhhhhheeeccccccCcchhhcc
Q 009274 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLG 113 (538)
Q Consensus 36 ~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~ 113 (538)
..++.|||||++ .+ ..++.++|||||||++|+|++ |. ||.........
T Consensus 172 ~~~~~y~apE~~------~~---------~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~--------------- 221 (270)
T cd05047 172 RLPVRWMAIESL------NY---------SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY--------------- 221 (270)
T ss_pred CCccccCChHHH------cc---------CCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHH---------------
Confidence 346789999998 22 457789999999999999997 88 99764332111
Q ss_pred hhhHHHHHHHHHHH-hhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 114 MYMAWMEKVTYLLE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
...+.... .........+.+++.+|+..+|.+||+..++...+.+++
T Consensus 222 ------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~ 269 (270)
T cd05047 222 ------EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 269 (270)
T ss_pred ------HHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence 00000000 000011224778999999999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-11 Score=121.32 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=78.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
...+|+. |+++.+.............|++.|||||++ .+ ..++.++|||||||+||||++ |.
T Consensus 275 ~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslGvil~e~l~~g~ 339 (401)
T cd05107 275 GKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESI------FN---------NLYTTLSDVWSFGILLWEIFTLGG 339 (401)
T ss_pred CCEEEEEecCcceecccccccccCCCcCCCCceeChHHh------cC---------CCCCcHhHHHHHHHHHHHHHHcCC
Confidence 3568887 666654433221112346789999999998 33 456789999999999999998 77
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||......... . ..+..-..... ......+.+++.+|+..+|.+||...++.+.+.++
T Consensus 340 ~P~~~~~~~~~~-------------~-------~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~ 399 (401)
T cd05107 340 TPYPELPMNEQF-------------Y-------NAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL 399 (401)
T ss_pred CCCCCCCchHHH-------------H-------HHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 98753222000 0 00000000000 01123478899999999999999999999888765
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 400 ~ 400 (401)
T cd05107 400 L 400 (401)
T ss_pred h
Confidence 4
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-11 Score=114.93 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=74.2
Q ss_pred eeeeec--cccccccccchhhhhh-hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLS-DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~-~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
...|+. |+++.+.......... ...|+..|+|||++ .+ ..++.++|||||||++|+|++ |+
T Consensus 134 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~------~~---------~~~~~~~Di~slG~~l~el~t~g~ 198 (257)
T cd05040 134 DKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESL------RT---------RTFSHASDVWMFGVTLWEMFTYGE 198 (257)
T ss_pred CEEEeccccccccccccccceecccCCCCCceecCHHHh------cc---------cCcCchhhhHHHHHHHHHHHhCCC
Confidence 456777 4566554432211111 35788999999998 33 457789999999999999999 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||...+...+. .+.. .. ... .........+.+++.+|+..+|.+||+..++.+.+
T Consensus 199 ~p~~~~~~~~~~~~~~~-~~------~~~-------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l 255 (257)
T cd05040 199 EPWAGLSGSQILKKIDK-EG------ERL-------------ERPEACPQDIYNVMLQCWAHNPADRPTFAALREFL 255 (257)
T ss_pred CCCCCCCHHHHHHHHHh-cC------CcC-------------CCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHh
Confidence 99654333111 0000 00 000 00001123477899999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-11 Score=113.06 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=78.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++.+.............+++.|||||.+ .+ ..++.++|+|||||++|||++ |+
T Consensus 145 ~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~------~~---------~~~~~~~Di~slG~~l~el~~~g~ 209 (279)
T cd05057 145 PQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESI------LH---------RIYTHKSDVWSYGVTVWELMTFGA 209 (279)
T ss_pred CCeEEECCCcccccccCcccceecCCCcccccccCHHHh------hc---------CCcCchhhHHHHHHHHHHHhcCCC
Confidence 3467888 556666544332212234456789999988 22 557789999999999999999 99
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+...... .. ...........+.+++.+|+..+|+.||+..++.+.+.++.
T Consensus 210 ~p~~~~~~~~~~~~~~~--------~~------------~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~ 269 (279)
T cd05057 210 KPYEGIPAVEIPDLLEK--------GE------------RLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMA 269 (279)
T ss_pred CCCCCCCHHHHHHHHhC--------CC------------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 9987544311100000 00 00000112234678899999999999999999988888765
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-11 Score=115.38 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=72.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++++..... ......|++.|||||++ .+ .....++.++|+|||||++|+|++|+ |
T Consensus 143 ~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~------~~------~~~~~~~~~~Dvws~G~il~el~~g~~p 208 (267)
T cd06646 143 GDVKLADFGVAAKITATIA--KRKSFIGTPYWMAPEVA------AV------EKNGGYNQLCDIWAVGITAIELAELQPP 208 (267)
T ss_pred CCEEECcCccceeeccccc--ccCccccCccccCHhHc------cc------ccCCCCcchhhHHHHHHHHHHHHhCCCC
Confidence 457887 55565543211 12357899999999998 21 01234567899999999999999999 9
Q ss_pred cchhhhhh-eeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDY-IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....+.. ...+. +. ...+ +.+.. . ......+.+++.+||..+|++||+..++.+
T Consensus 209 ~~~~~~~~~~~~~~-~~------~~~~-~~~~~-~--------~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 264 (267)
T cd06646 209 MFDLHPMRALFLMS-KS------NFQP-PKLKD-K--------TKWSSTFHNFVKISLTKNPKKRPTAERLLT 264 (267)
T ss_pred ccccchhhhheeee-cC------CCCC-CCCcc-c--------cccCHHHHHHHHHHhhCChhhCcCHHHHhc
Confidence 86543331 11000 00 0000 00000 0 011124778999999999999999877654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-09 Score=108.86 Aligned_cols=192 Identities=19% Similarity=0.288 Sum_probs=141.0
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeE-EEE-E-ecCCCCEEEEEcCCCcEEEEEccCCCC
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVM-AVV-Y-VDEDQPLCISGDSGGGIFVWSFSFPLG 327 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~-~-~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (538)
+.|....+. ...++.++.++.+.+||...+.....+........ +.. + ....+-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 444443333 88899999999999999988776666553322211 111 1 122556788999999999999872222
Q ss_pred CcceeeecccCCceeeeEEE--EeecCCEEEEeeCCCcEEEEECCCCceeE-EecCCCCCeEEEEEeCCEEEEEecCCcE
Q 009274 328 HEPLKKWNEEKDWRYSGIHA--LTTSGRYLYTGSGDRTIKAWSLLDGTLSC-TMSGHKSAVSTLAVCNGVLYSGSRDGTI 404 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~l~s~s~dg~i 404 (538)
+. ....|.+ .+.. ++.||+++++.|+|.++++|++.+.+... ..-+|+..|..+.+.++.+++++.|.+.
T Consensus 168 --p~-~l~GHeG----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctc 240 (967)
T KOG0974|consen 168 --PI-RLKGHEG----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTC 240 (967)
T ss_pred --cc-eecccCC----ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEE
Confidence 21 2233333 2333 44589999999999999999999988766 6678999999999998899999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 009274 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 453 (538)
++|+.. ++.+..+..|....+.. +..+++...+++++.|+.+++||.
T Consensus 241 rvW~~~-~~~l~~y~~h~g~~iw~-~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYDEHSGKGIWK-IAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEecc-cceehhhhhhhhcceeE-EEEcCCceEEEeeccCcchhhhhh
Confidence 999764 44555676665555555 588888999999999999999983
|
|
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-11 Score=111.56 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=74.5
Q ss_pred eeeeec--cccccccccchhhhhh--hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLS--DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~--~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
...|+. |+++.+...... ... ...++..|+|||.+ .+ ..++.++||||||+++|+|++ |
T Consensus 132 ~~~kl~df~~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~~~~~g 195 (257)
T cd05060 132 HQAKISDFGMSRALGAGSDY-YRATTAGRWPLKWYAPECI------NY---------GKFSSKSDVWSYGVTLWEAFSYG 195 (257)
T ss_pred CcEEeccccccceeecCCcc-cccccCccccccccCHHHh------cC---------CCCCccchHHHHHHHHHHHHcCC
Confidence 346777 556655433221 111 12345789999998 33 567889999999999999998 8
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
. ||.......+. .+. . .. ...........+.+++.+|+..+|++||+..++...+..
T Consensus 196 ~~p~~~~~~~~~~~~~~---~------~~------------~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~ 254 (257)
T cd05060 196 AKPYGEMKGAEVIAMLE---S------GE------------RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRR 254 (257)
T ss_pred CCCcccCCHHHHHHHHH---c------CC------------cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 8 99765333111 000 0 00 000011122347789999999999999999998887665
Q ss_pred h
Q 009274 165 L 165 (538)
Q Consensus 165 l 165 (538)
.
T Consensus 255 ~ 255 (257)
T cd05060 255 D 255 (257)
T ss_pred c
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-11 Score=111.70 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=74.3
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-p 88 (538)
..|+. |+++.+.+.. ....+..+++.|+|||++ .+ ..++.++||||||+++|+|++ |+ |
T Consensus 142 ~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~PE~~------~~---------~~~~~~~DiwslG~~l~~l~~~g~~p 204 (261)
T cd05148 142 VCKVADFGLARLIKEDV--YLSSDKKIPYKWTAPEAA------SH---------GTFSTKSDVWSFGILLYEMFTYGQVP 204 (261)
T ss_pred eEEEccccchhhcCCcc--ccccCCCCceEecCHHHH------cc---------CCCCchhhHHHHHHHHHHHHcCCCCC
Confidence 56777 4555554331 123355678899999998 22 456789999999999999999 78 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
|.......+... ... . ............+.+++.+||..+|.+||+..++.+.+..
T Consensus 205 ~~~~~~~~~~~~----------~~~------~----~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 205 YPGMNNHEVYDQ----------ITA------G----YRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred CCcCCHHHHHHH----------HHh------C----CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 976543311100 000 0 0000001122347789999999999999999998876643
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-11 Score=112.44 Aligned_cols=94 Identities=18% Similarity=0.327 Sum_probs=64.1
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchh
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (538)
.....|++.|||||++ .+ ..++.++|+||||+++|+|++|+ ||.......+.
T Consensus 159 ~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~------------ 211 (257)
T cd08223 159 ASTLIGTPYYMSPELF------SN---------KPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLV------------ 211 (257)
T ss_pred cccccCCcCccChhHh------cC---------CCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHH------------
Confidence 4467899999999998 33 56778999999999999999999 99865333111
Q ss_pred hcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
. .......+..+ ......+.+++.+|++.+|.+||++.++.+
T Consensus 212 -~---~~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 253 (257)
T cd08223 212 -Y---RIIEGKLPPMP----KDYSPELGELIATMLSKRPEKRPSVKSILR 253 (257)
T ss_pred -H---HHHhcCCCCCc----cccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0 00000000000 011224778999999999999999777654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-11 Score=112.58 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=75.8
Q ss_pred eeeeec--cccccccccchh--hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 12 SVAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
+.+|+. |+++.+.+.... .......+++.|||||++ .+ ..++.++|||||||++|||++|.
T Consensus 135 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~~~ 199 (262)
T cd05058 135 FTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESL------QT---------QKFTTKSDVWSFGVLLWELMTRG 199 (262)
T ss_pred CcEEECCccccccccCCcceeecccccCcCCccccChhHh------cc---------CccchHHHHHHHHHHHHHHHcCC
Confidence 457888 566655433210 001245678899999998 33 45678999999999999999964
Q ss_pred --ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 --QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 --pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .+. ....+. ........+.+++.+||..+|.+||+..++...+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~ 258 (262)
T cd05058 200 APPYPDVDSFDITVYLL---------QGRRLL------------QPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQ 258 (262)
T ss_pred CCCCCCCCHHHHHHHHh---------cCCCCC------------CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHH
Confidence 67654332111 000 000000 000112247789999999999999999999988777
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
++
T Consensus 259 ~~ 260 (262)
T cd05058 259 IF 260 (262)
T ss_pred Hh
Confidence 54
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-11 Score=118.94 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=67.2
Q ss_pred hhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh-heeeccccccCcchh
Q 009274 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNIA 110 (538)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~~ 110 (538)
-+|.|||.|||||+.+=+.-+ ...|++++||||||++|.||.-+. |-...++. +++.+.
T Consensus 188 DsFIGTPYWMAPEVvmCET~K----------D~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKia--------- 248 (1187)
T KOG0579|consen 188 DSFIGTPYWMAPEVVMCETFK----------DQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIA--------- 248 (1187)
T ss_pred ccccCCcccccchheeecccc----------CCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHh---------
Confidence 369999999999987322111 267899999999999999999999 55554444 222111
Q ss_pred hcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
...++....+ ..+...+.+++.+||.++|..||+++++.+
T Consensus 249 KSePPTLlqP----------S~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~ 288 (1187)
T KOG0579|consen 249 KSEPPTLLQP----------SHWSRSFSDFLKRCLVKNPRNRPPAAQLLK 288 (1187)
T ss_pred hcCCCcccCc----------chhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence 1122211111 122234778999999999999999987765
|
|
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-11 Score=112.82 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=71.0
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.++ ++...... .......||+.|||||++..... ....+++++|||||||+||+|++|. |
T Consensus 150 ~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Dv~slG~il~~l~~g~~p 217 (275)
T cd06608 150 AEVKLVDFGVSAQLDSTL--GRRNTFIGTPYWMAPEVIACDEQ----------PDASYDARSDVWSLGITAIELADGKPP 217 (275)
T ss_pred CeEEECCCccceecccch--hhhcCccccccccCHhHhccccc----------ccCCccccccHHHhHHHHHHHHhCCCC
Confidence 44677744 44333221 11345789999999999822111 1245678999999999999999999 9
Q ss_pred cchhhhhh-eeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDY-IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....... +..+. ......... +. .....+.+++.+||..+|++||+..++..
T Consensus 218 ~~~~~~~~~~~~~~----------~~~~~~~~~--~~-------~~~~~~~~li~~~l~~dp~~Rpt~~~ll~ 271 (275)
T cd06608 218 LCDMHPMRALFKIP----------RNPPPTLKS--PE-------NWSKKFNDFISECLIKNYEQRPFMEELLE 271 (275)
T ss_pred ccccchHHHHHHhh----------ccCCCCCCc--hh-------hcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 97543221 11000 000000000 00 01123678999999999999999877654
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-11 Score=117.16 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=73.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++....... ......||+.|+|||++ .+ ...++.++|||||||++|+|+||+ |
T Consensus 141 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~tg~~p 204 (309)
T cd07872 141 GELKLADFGLARAKSVPTK--TYSNEVVTLWYRPPDVL------LG--------SSEYSTQIDMWGVGCIFFEMASGRPL 204 (309)
T ss_pred CCEEECccccceecCCCcc--ccccccccccccCCHHH------hC--------CCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 467888 44544332221 24457899999999998 32 235678999999999999999999 9
Q ss_pred cchhhhhheee--ccccccCcchhhcchhhHHHHHH-HHHH-------HhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 89 FTKELIDYIRC--VSTKASDDNIACLGMYMAWMEKV-TYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 89 f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
|.+.+...... ...-.... -..+.......... ...+ ....+.....+.+++.+||..+|.+||++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~ 283 (309)
T cd07872 205 FPGSTVEDELHLIFRLLGTPT-EETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEA 283 (309)
T ss_pred CCCCChHHHHHHHHHHhCCCC-HHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHH
Confidence 97654321110 00000000 00000000000000 0000 00001112346789999999999999998877
Q ss_pred HH
Q 009274 159 WK 160 (538)
Q Consensus 159 ~~ 160 (538)
.+
T Consensus 284 l~ 285 (309)
T cd07872 284 MK 285 (309)
T ss_pred hc
Confidence 65
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.4e-11 Score=113.09 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=80.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+.++||+ ||||.+.+.+=+ ...+-.==.-|.|||.+ ..++++.+||||||||+||||.| |+
T Consensus 339 ~~~vKIsDFGLAr~~~d~~Y~-~~~~~kfPIkWtAPEa~---------------~~~~FS~kSDVWSFGVlL~E~fT~G~ 402 (468)
T KOG0197|consen 339 DLVVKISDFGLARLIGDDEYT-ASEGGKFPIKWTAPEAL---------------NYGKFSSKSDVWSFGVLLWELFTYGR 402 (468)
T ss_pred CceEEEcccccccccCCCcee-ecCCCCCCceecCHHHH---------------hhCCcccccceeehhhhHHHHhccCC
Confidence 3589999 999977766532 12222223579999999 34678899999999999999999 88
Q ss_pred -ccchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
|+.+.+.. ++..++ ++.. ++ +......++-++...|+..+|++||+-..+...+..+
T Consensus 403 ~py~~msn~ev~~~le-----------------~GyR--lp--~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~ 461 (468)
T KOG0197|consen 403 VPYPGMSNEEVLELLE-----------------RGYR--LP--RPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDF 461 (468)
T ss_pred CCCCCCCHHHHHHHHh-----------------ccCc--CC--CCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHh
Confidence 99886444 111111 0000 00 1112334477788889999999999988777766655
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 462 ~ 462 (468)
T KOG0197|consen 462 F 462 (468)
T ss_pred h
Confidence 4
|
|
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-11 Score=112.39 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=71.8
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+.++ ++........ ......++..|||||++ .+ ..++.++|+||||++||+|++ |+
T Consensus 137 ~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~s~G~~l~el~~~g~~ 200 (256)
T cd05114 137 GVVKVSDFGMTRYVLDDEYT-SSSGAKFPVKWSPPEVF------NF---------SKYSSKSDVWSFGVLMWEVFTEGKM 200 (256)
T ss_pred CeEEECCCCCccccCCCcee-ccCCCCCchhhCChhhc------cc---------CccchhhhhHHHHHHHHHHHcCCCC
Confidence 46788854 4544322211 12234567789999998 33 456789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||.......+. .+.. . ..+ .........+.+++.+|++.+|.+||++.++.+.
T Consensus 201 p~~~~~~~~~~~~i~~--~------~~~-------------~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~ 254 (256)
T cd05114 201 PFEKKSNYEVVEMISR--G------FRL-------------YRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRA 254 (256)
T ss_pred CCCCCCHHHHHHHHHC--C------CCC-------------CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence 99765433111 0000 0 000 0000112237789999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-11 Score=113.89 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=76.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++.+.............+++.|||||++ .+ ..++.++|+|||||++|||++ |.
T Consensus 156 ~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~------~~---------~~~~~~~DvwslG~~l~el~~~~~~ 220 (288)
T cd05061 156 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL------KD---------GVFTTSSDMWSFGVVLWEITSLAEQ 220 (288)
T ss_pred CcEEECcCCccccccccccccccCCCcccccccCHHHh------cc---------CCCChHhHHHHHHHHHHHHHhCCCC
Confidence 457887 455654433221112234568899999998 33 567889999999999999999 67
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+........ .+ .........+.+++.+||..+|.+||+..++.+.+....
T Consensus 221 p~~~~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~ 279 (288)
T cd05061 221 PYQGLSNEQVLKFVMDGG----------------YL----DQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 279 (288)
T ss_pred CCCCCCHHHHHHHHHcCC----------------CC----CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence 997643331110000000 00 000112235888999999999999999999888777654
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.8e-11 Score=111.15 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=73.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++.....+.. ......+++.|+|||++ .+ ..++.++||||||+++|+|++ |+
T Consensus 139 ~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~pe~~------~~---------~~~~~~~Di~slG~~l~el~~~g~~ 202 (260)
T cd05067 139 LCCKIADFGLARLIEDNEYT-AREGAKFPIKWTAPEAI------NY---------GTFTIKSDVWSFGILLTEIVTYGRI 202 (260)
T ss_pred CCEEEccCcceeecCCCCcc-cccCCcccccccCHHHh------cc---------CCcCcccchHHHHHHHHHHHhCCCC
Confidence 346776 445544422111 12245678899999998 33 556789999999999999999 89
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.+.....+. .+. . .... .........+.+++.+||..+|++||+..++...+.
T Consensus 203 p~~~~~~~~~~~~~~---~-----~~~~-------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 258 (260)
T cd05067 203 PYPGMTNPEVIQNLE---R-----GYRM-------------PRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLE 258 (260)
T ss_pred CCCCCChHHHHHHHH---c-----CCCC-------------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhh
Confidence 99765333111 000 0 0000 000011224788999999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-11 Score=113.84 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=65.0
Q ss_pred cccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-ccchhhhhheeeccccccCcchhhcchh
Q 009274 38 SNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGMY 115 (538)
Q Consensus 38 ~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (538)
+..|||||++ .+ ..++.++|||||||++|+|++ |. ||.......+.
T Consensus 181 ~~~y~aPE~~------~~---------~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~----------------- 228 (297)
T cd05089 181 PVRWMAIESL------NY---------SVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELY----------------- 228 (297)
T ss_pred CccccCchhh------cc---------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHH-----------------
Confidence 5679999998 32 457789999999999999998 98 99765443111
Q ss_pred hHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 116 MAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
........... ......+.+++.+||..+|.+||+..++.+.+..++.
T Consensus 229 ----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~ 277 (297)
T cd05089 229 ----EKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLE 277 (297)
T ss_pred ----HHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 00000000000 0112347789999999999999999999887777653
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-11 Score=111.95 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=70.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++...+...........+++.|||||++ .+ +.++.++|||||||++|+|++ |.
T Consensus 131 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~e~~~~~~~ 195 (252)
T cd05084 131 NVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEAL------NY---------GRYSSESDVWSFGILLWEAFSLGAV 195 (252)
T ss_pred CcEEECccccCcccccccccccCCCCCCceeecCchhh------cC---------CCCChHHHHHHHHHHHHHHHhCCCC
Confidence 457887 455554432111001111235679999998 33 567889999999999999998 77
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||......... .+. . ..... ........+.+++.+||..+|++||+..++.+.+
T Consensus 196 p~~~~~~~~~~~~~~---~------~~~~~------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l 250 (252)
T cd05084 196 PYANLSNQQTREAIE---Q------GVRLP------------CPELCPDAVYRLMERCWEYDPGQRPSFSTVHQEL 250 (252)
T ss_pred CccccCHHHHHHHHH---c------CCCCC------------CcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence 88754333111 000 0 00000 0001122477899999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-11 Score=113.56 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=72.2
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+.. +++...... ....+||+.|||||++ .+ ..++.++|||||||++|+|+||+ |
T Consensus 141 ~~~~l~d~gl~~~~~~~~----~~~~~~~~~~~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~tg~~p 201 (284)
T cd06620 141 GQIKLCDFGVSGELINSI----ADTFVGTSTYMSPERI------QG---------GKYTVKSDVWSLGISIIELALGKFP 201 (284)
T ss_pred CcEEEccCCcccchhhhc----cCccccCcccCCHHHH------cc---------CCCCccchHHHHHHHHHHHHhCCCC
Confidence 3467774 444443221 2247899999999998 33 46778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC--ccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS--EFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ... .............. ....... ....+.+++.+||..+|++||++.++.+
T Consensus 202 ~~~~~~~~~~------~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~ 265 (284)
T cd06620 202 FAFSNIDDDG------QDD---PMGILDLLQQIVQE-PPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCA 265 (284)
T ss_pred Ccccchhhhh------hhh---hhHHHHHHHHHhhc-cCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 9864332000 000 00000000000000 0000000 1224788999999999999999987765
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-11 Score=110.96 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=74.4
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+.+ +++.+...... ......++..|+|||++ .+ ..++.++|+|||||++|+|+| |+
T Consensus 139 ~~~~l~d~~~~~~~~~~~~~-~~~~~~~~~~y~~PE~~------~~---------~~~~~~~Di~slG~~l~~l~t~g~~ 202 (260)
T cd05073 139 LVCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEAI------NF---------GSFTIKSDVWSFGILLMEIVTYGRI 202 (260)
T ss_pred CcEEECCCcceeeccCCCcc-cccCCcccccccCHhHh------cc---------CCcCccccchHHHHHHHHHHhcCCC
Confidence 4577874 45555433221 12235677889999998 33 457789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .++ +. ... .........+.+++.+|+..+|++||+..++...+..
T Consensus 203 p~~~~~~~~~~~~~~--~~-------~~~------------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 203 PYPGMSNPEVIRALE--RG-------YRM------------PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred CCCCCCHHHHHHHHh--CC-------CCC------------CCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 99765333111 000 00 000 0001112247789999999999999999888776653
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-11 Score=122.11 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=40.7
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID 95 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~ 95 (538)
.++||+.|||||++ .+ ..++.++|||||||+||+|++|+ ||......
T Consensus 203 ~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~ 250 (376)
T cd05598 203 SLVGTPNYIAPEVL------LR---------TGYTQLCDWWSVGVILYEMLVGQPPFLADTPA 250 (376)
T ss_pred ccCCCccccCHHHH------cC---------CCCCcceeeeeccceeeehhhCCCCCCCCCHH
Confidence 57899999999999 43 55778999999999999999999 99876543
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-11 Score=113.79 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=72.7
Q ss_pred eeeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++..|+.+ +++.+.............+++.|||||++ .+ ..++.++|||||||++|+|++ |.
T Consensus 166 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~el~~~~~ 230 (288)
T cd05050 166 NMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESI------FY---------NRYTTESDVWAYGVVLWEIFSYGM 230 (288)
T ss_pred CCceEECccccceecccCccccccCCCccChhhcCHHHH------hc---------CCCCchhHHHHHHHHHHHHHhCCC
Confidence 34578874 44443322111112234567889999998 33 567889999999999999998 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.+.....+. .+. . ..... ........+.+++.+||..+|.+||++.++.+.+.
T Consensus 231 ~p~~~~~~~~~~~~~~---~--------------~~~~~----~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~ 287 (288)
T cd05050 231 QPYYGMAHEEVIYYVR---D--------------GNVLS----CPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQ 287 (288)
T ss_pred CCCCCCCHHHHHHHHh---c--------------CCCCC----CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence 99765433111 000 0 00000 00011234788999999999999999988876543
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-11 Score=112.22 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=71.4
Q ss_pred eeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+-.|+. |++++........ ......|++.|+|||++ .+ ..++.++||||||+++|+|++|+
T Consensus 141 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~ 205 (263)
T cd06625 141 GNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVI------SG---------EGYGRKADVWSVGCTVVEMLTEKP 205 (263)
T ss_pred CCEEEeecccceeccccccccccccCCCcCccccCccee------cc---------CCCCchhhhHHHHHHHHHHHhCCC
Confidence 346777 4555443322110 01347799999999998 43 44778999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||......... ... ...... .........+.+++.+||.++|.+||+..++..
T Consensus 206 p~~~~~~~~~~~~~~---------~~~~~~-----------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 259 (263)
T cd06625 206 PWAEFEAMAAIFKIA---------TQPTNP-----------QLPSHVSPDARNFLRRTFVENAKKRPSAEELLR 259 (263)
T ss_pred CccccchHHHHHHHh---------ccCCCC-----------CCCccCCHHHHHHHHHHhhcCcccCCCHHHHhh
Confidence 99764332111 000 000000 000011224778999999999999999877654
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-11 Score=114.01 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=77.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+.+|+. |+++.+.............+++.|||||++ .+ ..++.++|||||||++|||++ |.
T Consensus 146 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~------~~---------~~~~~~~DiwslG~~l~el~t~g~~ 210 (303)
T cd05110 146 NHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECI------HY---------RKFTHQSDVWSYGVTIWELMTFGGK 210 (303)
T ss_pred CceEEccccccccccCcccccccCCCccccccCCHHHh------cc---------CCCChHHHHHHHHHHHHHHHhCCCC
Confidence 457888 566665543322112245668899999998 33 557789999999999999998 77
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+..+.. . ...+. ........+.+++.+|+..+|++||+..++.+.++.+.
T Consensus 211 p~~~~~~~~~~~~~~--~------~~~~~------------~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~ 269 (303)
T cd05110 211 PYDGIPTREIPDLLE--K------GERLP------------QPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMA 269 (303)
T ss_pred CCCCCCHHHHHHHHH--C------CCCCC------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 997643321110000 0 00000 00111234678999999999999999999888877764
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-08 Score=98.23 Aligned_cols=197 Identities=8% Similarity=0.019 Sum_probs=129.2
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeC---CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCc--EE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSF---DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG--IF 318 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~ 318 (538)
..+..|...+.+.+|+ |+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|++..++++.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 4466788899999999 788887764 468999999887653 455566778899999988888778877766 66
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-CC--cEEEEECCCCceeEEecCCCCCeEEEEEe--CC
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DR--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG 393 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 393 (538)
+||+.++... ....+.. ......++|||+.++..+. +| .|+++|+.+++.. .+..+...+....|+ ++
T Consensus 274 ~~d~~~~~~~----~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 274 TMDLRSGTTT----RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGD 346 (435)
T ss_pred EEECCCCceE----EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCC
Confidence 6677654321 1111111 1223588999998877664 33 6888898766543 343345556778888 45
Q ss_pred EEEEEecC---CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Q 009274 394 VLYSGSRD---GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES------GSIKVWRND 454 (538)
Q Consensus 394 ~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 454 (538)
.|+..+.+ ..|.+||+.++.. ..+.... . .....|+|||+.|+..+.+ ..+.++|..
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~--~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF--L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCce-EeccCCC--C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 66665543 3688899865543 3333221 1 2236899999988776543 246666643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-08 Score=90.28 Aligned_cols=148 Identities=11% Similarity=0.175 Sum_probs=98.5
Q ss_pred EEEEEecCCCCEEEEEcC---------CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEE--eeCCCcE
Q 009274 296 MAVVYVDEDQPLCISGDS---------GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT--GSGDRTI 364 (538)
Q Consensus 296 ~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--g~~dg~i 364 (538)
..+.|++++..+++.... -|...+|.++..... ......... ....-.+++|+++.+++ |..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~l~~~-~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIELKKE-GPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceeeccCC-CceEEEEECcCCCEEEEEEccCCccc
Confidence 356677777766665551 134556666433221 122111111 11234588899987654 4467899
Q ss_pred EEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec---CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE
Q 009274 365 KAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR---DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439 (538)
Q Consensus 365 ~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 439 (538)
.+||++ ++.+..+. ...++.+.|+ ++++++++. .|.|.+||.++.+.+...... . ...+.|+|+|+++
T Consensus 86 ~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~--~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--D--ATDVEWSPDGRYL 158 (194)
T ss_pred EEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--c--EEEEEEcCCCCEE
Confidence 999996 66666664 5678899999 568888764 466999999988887776532 2 3447999999999
Q ss_pred EEEeC------CCcEEEEeC
Q 009274 440 VVSHE------SGSIKVWRN 453 (538)
Q Consensus 440 ~~~~~------dg~i~iwd~ 453 (538)
+++.. |+.++||+.
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEeccceeccccEEEEEe
Confidence 99875 688889983
|
|
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-11 Score=119.58 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=40.8
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID 95 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~ 95 (538)
..+||+.|||||++ .+ ..++.++|||||||+||||++|+ ||.+.+..
T Consensus 195 ~~~Gt~~Y~aPE~~------~~---------~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~ 242 (363)
T cd05628 195 STVGTPDYIAPEVF------MQ---------TGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ 242 (363)
T ss_pred cccCCccccCHHHH------cC---------CCCCCchhhhhhHHHHHHHHhCCCCCCCCCHH
Confidence 57899999999999 43 56788999999999999999999 99875444
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-11 Score=110.89 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=72.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|++ |+++...+.... ......++..|||||++ .+ ..++.++|+||||+++|+|++ |+
T Consensus 136 ~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~y~~Pe~~------~~---------~~~~~~~Di~slG~il~~l~~~g~ 199 (256)
T cd05059 136 DNVVKVSDFGLARYVLDDQYT-SSQGTKFPVKWAPPEVF------DY---------SRFSSKSDVWSFGVLMWEVFSEGK 199 (256)
T ss_pred CCcEEECCcccceeccccccc-ccCCCCCCccccCHHHh------cc---------CCCCchhhHHHHHHHHHHHhccCC
Confidence 4568888 455555443221 11223345689999998 33 567789999999999999999 77
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||.......+. ........... ......+.+++.+||..+|++||+..++.+.
T Consensus 200 ~p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~ 254 (256)
T cd05059 200 MPYERFSNSEVV---------------------ESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQ 254 (256)
T ss_pred CCCCCCCHHHHH---------------------HHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence 99764333111 00000000000 1122347889999999999999998887664
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-11 Score=115.35 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=71.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+...... .....|++.|||||++ .+ ..++.++|+|||||++|+|++|+ |
T Consensus 154 ~~~kL~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~el~~g~~p 216 (297)
T cd06659 154 GRVKLSDFGFCAQISKDVPK--RKSLVGTPYWMAPEVI------SR---------TPYGTEVDIWSLGIMVIEMVDGEPP 216 (297)
T ss_pred CcEEEeechhHhhccccccc--ccceecCccccCHHHH------cc---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 456777 444444322111 2357899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... . ......+ ............+.+++.+||..+|.+||+..++.+
T Consensus 217 ~~~~~~~~~~-------------~----~~~~~~~-~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~ 270 (297)
T cd06659 217 YFSDSPVQAM-------------K----RLRDSPP-PKLKNAHKISPVLRDFLERMLTREPQERATAQELLD 270 (297)
T ss_pred CCCCCHHHHH-------------H----HHhccCC-CCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence 9754332100 0 0000000 000000111223778999999999999999887665
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-11 Score=111.01 Aligned_cols=113 Identities=18% Similarity=0.253 Sum_probs=75.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-+|+. |+++...+.+ ..+...|++.|+|||++ .+ ..++.++|+||||+++|+|++|+ |
T Consensus 151 ~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~Pe~~------~~---------~~~~~~~Dv~slG~ll~~l~~g~~p 212 (269)
T cd08528 151 DKVTITDFGLAKQKQPES---KLTSVVGTILYSCPEIV------KN---------EPYGEKADVWAFGCILYQMCTLQPP 212 (269)
T ss_pred CcEEEecccceeeccccc---ccccccCcccCcChhhh------cC---------CCCchHHHHHHHHHHHHHHHhCCCc
Confidence 347888 4555555443 24568899999999998 33 45778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
|......... ..... ....+... .....+.+++.+|+..+|++||+..++...+
T Consensus 213 ~~~~~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~ 267 (269)
T cd08528 213 FYSTNMLSLA-----------------TKIVE---AVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMI 267 (269)
T ss_pred ccccCHHHHH-----------------HHHhh---ccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHh
Confidence 9765333111 00000 00000000 1123488899999999999999998887654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-11 Score=113.70 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=63.9
Q ss_pred hhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhh
Q 009274 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (538)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (538)
...+|++.|+|||++... ......++.++|+|||||++|+|++|. ||....+...... .
T Consensus 179 ~~~~~~~~y~aPE~l~~~----------~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~----------~ 238 (282)
T cd06636 179 NTFIGTPYWMAPEVIACD----------ENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFL----------I 238 (282)
T ss_pred CcccccccccCHhhcCcc----------cCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhh----------H
Confidence 357899999999998111 011345778999999999999999999 9976533311100 0
Q ss_pred cchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
..... +..........+.+++.+||..+|.+||++.++.+
T Consensus 239 ~~~~~---------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~ 278 (282)
T cd06636 239 PRNPP---------PKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK 278 (282)
T ss_pred hhCCC---------CCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence 00000 00000011224788999999999999999877653
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-11 Score=113.31 Aligned_cols=113 Identities=14% Similarity=0.207 Sum_probs=71.5
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.+ ++..+..... ......|++.|+|||++ .+ ..++.++||||||+++|+|++|+ |
T Consensus 136 ~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~------~~---------~~~~~~~Di~s~G~il~~l~~g~~p 198 (256)
T cd06612 136 GQAKLADFGVSGQLTDTMA--KRNTVIGTPFWMAPEVI------QE---------IGYNNKADIWSLGITAIEMAEGKPP 198 (256)
T ss_pred CcEEEcccccchhcccCcc--ccccccCCccccCHHHH------hc---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 4577884 4454443221 13346799999999998 43 45678999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ... . ........ ... ....+.+++.+|+..+|++||++.++..
T Consensus 199 ~~~~~~~~~~~~~~---------~-~~~~~~~~-~~~--------~~~~~~~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 199 YSDIHPMRAIFMIP---------N-KPPPTLSD-PEK--------WSPEFNDFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred CCCcchhhhhhhhc---------c-CCCCCCCc-hhh--------cCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence 9765433111 000 0 00000000 000 1113678999999999999999877653
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-11 Score=112.03 Aligned_cols=117 Identities=20% Similarity=0.374 Sum_probs=74.7
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+.+ +++.+..... ......|++.|+|||++ .+ ..++.++|+|||||++|+|++|. |
T Consensus 143 ~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~apE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 205 (267)
T cd08224 143 GVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERI------HE---------NGYNFKSDIWSLGCLLYEMAALQSP 205 (267)
T ss_pred CcEEEeccceeeeccCCCc--ccceecCCccccCHHHh------cc---------CCCCchhcHHHHHHHHHHHHHCCCC
Confidence 3456764 4444433221 13357899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhh--ee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 89 FTKELIDY--IR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 89 f~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
|....... +. .+. .. ...+.+ .. .....+.+++.+||..+|++||+..++.+.+.++
T Consensus 206 ~~~~~~~~~~~~~~~~---~~----~~~~~~--~~-----------~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~ 265 (267)
T cd08224 206 FYGDKMNLYSLCKKIE---KC----DYPPLP--AD-----------HYSEELRDLVSRCINPDPEKRPDISYVLQVAKEM 265 (267)
T ss_pred cccCCccHHHHHhhhh---cC----CCCCCC--hh-----------hcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence 96543220 00 000 00 000000 00 0112377899999999999999999888876654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-11 Score=109.98 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=72.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
...|+. |+++........ ......+++.|+|||++ .+ ..++.++||||||+++|+|++ |.
T Consensus 130 ~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~ll~~~~~~g~~ 193 (250)
T cd05085 130 NVLKISDFGMSRQEDDGIYS-SSGLKQIPIKWTAPEAL------NY---------GRYSSESDVWSYGILLWETFSLGVC 193 (250)
T ss_pred CeEEECCCccceeccccccc-cCCCCCCcccccCHHHh------cc---------CCCCchhHHHHHHHHHHHHhcCCCC
Confidence 346787 555554432211 01123556789999998 33 567789999999999999999 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||......... .......... .......+.+++.+|++.+|.+||+..++.+.+
T Consensus 194 p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l 248 (250)
T cd05085 194 PYPGMTNQQAR---------------------EQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKEL 248 (250)
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHh
Confidence 99765333111 0000000000 001123478899999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-11 Score=111.16 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=73.8
Q ss_pred eeeeec--cccccccccchhhh-hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 12 SVAKVG--CVGSRICDKEVGLF-LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
..+|+. |+++.......... .....+++.|||||++ .+ ..++.++|||||||++|||++ |+
T Consensus 144 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~------~~---------~~~~~~~Dv~slG~il~ell~~g~ 208 (268)
T cd05063 144 LECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAI------AY---------RKFTSASDVWSFGIVMWEVMSFGE 208 (268)
T ss_pred CcEEECCCccceecccccccceeccCCCcCceecCHHHh------hc---------CCcChHhHHHHHHHHHHHHHhCCC
Confidence 357777 55554443221111 1123345689999998 32 456789999999999999998 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.. ....+ ........+.+++.+|+..+|+.||+..++...+.++
T Consensus 209 ~p~~~~~~~~~~~~i~~---------~~~~~------------~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 209 RPYWDMSNHEVMKAIND---------GFRLP------------APMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred CCCCcCCHHHHHHHHhc---------CCCCC------------CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 99765433111 0000 00000 0001122377899999999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-11 Score=109.75 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=67.0
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchh-------hhhheeecccc
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKE-------LIDYIRCVSTK 103 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~-------~~~~~~~~~~~ 103 (538)
+.+.+||..|||||+..-...+ .-.|+.+||.||||||||-||.|. ||.+. +.... |.
T Consensus 243 L~tPvGSAEfMAPEVVd~fv~q----------A~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~-Cr--- 308 (463)
T KOG0607|consen 243 LLTPVGSAEFMAPEVVDVFVDQ----------ATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEV-CR--- 308 (463)
T ss_pred ccCcccchhhcchhHHhhhccc----------cccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCc-cH---
Confidence 5579999999999998333222 367889999999999999999999 99762 11100 00
Q ss_pred ccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 104 ASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
......+..+++.-.+.|+..+.....+..+++...|-.++.+|-+++.+.
T Consensus 309 -----~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vl 359 (463)
T KOG0607|consen 309 -----VCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVL 359 (463)
T ss_pred -----HHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhcc
Confidence 000011112222222233333333333366788888888888887766543
|
|
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-11 Score=114.72 Aligned_cols=114 Identities=12% Similarity=0.189 Sum_probs=72.2
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.++ ++.+..... ......|++.|||||++ .+ ..++.++|+||||+++|||++|. |
T Consensus 155 ~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slGvil~el~~g~~p 217 (292)
T cd06658 155 GRIKLSDFGFCAQVSKEVP--KRKSLVGTPYWMAPEVI------SR---------LPYGTEVDIWSLGIMVIEMIDGEPP 217 (292)
T ss_pred CCEEEccCcchhhcccccc--cCceeecCccccCHHHH------cc---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 46788854 444332211 13457899999999998 32 45778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .......+..... .......+.+++.+|+..+|.+||++.++.+
T Consensus 218 ~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~ 271 (292)
T cd06658 218 YFNEPPLQAM-----------------RRIRDNLPPRVKD-SHKVSSVLRGFLDLMLVREPSQRATAQELLQ 271 (292)
T ss_pred CCCCCHHHHH-----------------HHHHhcCCCcccc-ccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 9764333110 0000000000000 0011123778999999999999999887765
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-11 Score=110.83 Aligned_cols=110 Identities=22% Similarity=0.361 Sum_probs=72.6
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
+.|+. |+++....... .....|++.|||||++ .+ ...+.++|+||||+++|+|++|+ ||
T Consensus 140 ~~~l~d~~~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~~l~~l~~~~~~~ 201 (256)
T cd08220 140 VVKIGDFGISKILSSKSK---AYTVVGTPCYISPELC------EG---------KPYNQKSDIWALGCVLYELASLKRAF 201 (256)
T ss_pred EEEEccCCCceecCCCcc---ccccccCCcccCchhc------cC---------CCCCcccchHHHHHHHHHHHhCCCCc
Confidence 56777 44555443321 2347899999999998 33 45678999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.......... .................+.+++.+||..+|++||+..++..
T Consensus 202 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 202 EAANLPALVL--------------------KIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred ccCchHHHHH--------------------HHHhcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 8754431110 00000000000112234788999999999999999887654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-11 Score=113.07 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=72.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |++++...... ....+.||+.|||||++..... ....++.++|+|||||++|+|++|. |
T Consensus 140 ~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Dv~slGvil~el~~g~~p 207 (282)
T cd06643 140 GDIKLADFGVSAKNTRTIQ--RRDSFIGTPYWMAPEVVMCETS----------KDRPYDYKADVWSLGITLIEMAQIEPP 207 (282)
T ss_pred CCEEEcccccccccccccc--ccccccccccccCHhhccccCC----------CCCCCCccchhhhHHHHHHHHccCCCC
Confidence 446777 45555432211 1345789999999999821110 1234667999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .+. +.. .+ ... ........+.+++.+||+.+|++||+..++.+
T Consensus 208 ~~~~~~~~~~~~~~-~~~--------~~--------~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 261 (282)
T cd06643 208 HHELNPMRVLLKIA-KSE--------PP--------TLA--QPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ 261 (282)
T ss_pred ccccCHHHHHHHHh-hcC--------CC--------CCC--CccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9765433111 000 000 00 000 00001124778999999999999999877654
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-11 Score=112.04 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=75.1
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-p 88 (538)
-.|+. |+++.+.............+++.||+||++ .+ ..++.++|||||||++|+|++ |+ |
T Consensus 151 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~------~~---------~~~~~~sDi~slG~il~el~~~g~~p 215 (273)
T cd05074 151 TVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESL------AD---------NVYTTHSDVWAFGVTMWEIMTRGQTP 215 (273)
T ss_pred CEEECcccccccccCCcceecCCCccCchhhcCHhHH------hc---------CccchhhhhHHHHHHHHHHhhCCCCC
Confidence 45777 556655433211112245677899999998 32 456789999999999999999 77 8
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
|.......+.....+.. ... ........+.+++.+||+.+|+.||+..++...+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~ 272 (273)
T cd05074 216 YAGVENSEIYNYLIKGN-----RLK---------------QPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI 272 (273)
T ss_pred CCCCCHHHHHHHHHcCC-----cCC---------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 87654331110000000 000 0011223478899999999999999999998877654
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-11 Score=119.87 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=40.4
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID 95 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~ 95 (538)
.++||+.|||||++ .+ ..++.++|||||||+||||+||+ ||......
T Consensus 207 ~~~gt~~Y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~ 254 (381)
T cd05626 207 SLVGTPNYIAPEVL------LR---------KGYTQLCDWWSVGVILFEMLVGQPPFLAPTPT 254 (381)
T ss_pred cccCCccccCHHHH------cC---------CCCCCccceeehhhHHHHHHhCCCCCcCCCHH
Confidence 57899999999999 33 45788999999999999999999 99875443
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-11 Score=114.03 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=45.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... ......|++.|+|||++ .| ...++.++|||||||++|+|+||. |
T Consensus 136 ~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~tg~~p 199 (284)
T cd07839 136 GELKLADFGLARAFGIPVR--CYSAEVVTLWYRPPDVL------FG--------AKLYSTSIDMWSAGCIFAELANAGRP 199 (284)
T ss_pred CcEEECccchhhccCCCCC--CcCCCccccCCcChHHH------hC--------CcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 456777 45554443221 13457889999999998 33 133578999999999999999999 7
Q ss_pred cc
Q 009274 89 FT 90 (538)
Q Consensus 89 f~ 90 (538)
|.
T Consensus 200 ~~ 201 (284)
T cd07839 200 LF 201 (284)
T ss_pred Cc
Confidence 53
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-11 Score=112.58 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=68.6
Q ss_pred eeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
-.|+.+ +++.+... ....|++.|||||++ .+ ..+++++|+||||+++|+|++|+ ||
T Consensus 148 ~~~l~dfg~~~~~~~~------~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~il~~l~~g~~p~ 206 (267)
T PHA03390 148 RIYLCDYGLCKIIGTP------SCYDGTLDYFSPEKI------KG---------HNYDVSFDWWAVGVLTYELLTGKHPF 206 (267)
T ss_pred eEEEecCccceecCCC------ccCCCCCcccChhhh------cC---------CCCCchhhHHHHHHHHHHHHHCCCCC
Confidence 467774 44544322 246799999999999 33 45678999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch-hhHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL-TNVW 159 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~-~~~~ 159 (538)
.......+. ...+.... .............+.+++.+||+.+|.+|++. .++.
T Consensus 207 ~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l 260 (267)
T PHA03390 207 KEDEDEELD----------------LESLLKRQ-QKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEII 260 (267)
T ss_pred CCCCcchhh----------------HHHHHHhh-cccCCcccccCHHHHHHHHHHhccChhhCCchHHHHh
Confidence 754322110 00000000 00000011122347889999999999999974 5544
|
|
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.7e-11 Score=111.43 Aligned_cols=111 Identities=21% Similarity=0.322 Sum_probs=72.6
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+.. ++..+.... .+.....|++.|||||++ .+ ..++.++|+||||+++|+|++|. |
T Consensus 147 ~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~pE~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~p 209 (265)
T cd08217 147 NNVKLGDFGLAKILGHDS--SFAKTYVGTPYYMSPEQL------NH---------MSYDEKSDIWSLGCLIYELCALSPP 209 (265)
T ss_pred CCEEEecccccccccCCc--ccccccccCCCccChhhh------cC---------CCCCchhHHHHHHHHHHHHHHCCCc
Confidence 4567774 444444332 223457899999999998 33 45778999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+. . ....... ......+.+++.+||..+|.+||+..++.+
T Consensus 210 ~~~~~~~~~~~~~~---~-------~~~~~~~-----------~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~ 261 (265)
T cd08217 210 FTARNQLQLASKIK---E-------GKFRRIP-----------YRYSSELNEVIKSMLNVDPDKRPSTEELLQ 261 (265)
T ss_pred ccCcCHHHHHHHHh---c-------CCCCCCc-----------cccCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 9875433111 000 0 0000000 011123778999999999999999888764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-11 Score=112.12 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=72.0
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++.+..... ......||+.|||||++..... ....++.++|+|||||++|+|++|+ ||
T Consensus 162 ~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Dv~slGvi~~el~~g~~p~ 229 (286)
T cd06638 162 GVKLVDFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQ----------LDSTYDARCDVWSLGITAIELGDGDPPL 229 (286)
T ss_pred CEEEccCCceeecccCCC--ccccccCCCcccChhhhchhhh----------ccccccchhhhhhHHHHHHHHhcCCCCC
Confidence 46777 45555443221 1335689999999999822111 1244678999999999999999999 98
Q ss_pred chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
......... ... ..... .... .......+.+++.+||+.+|++||++.++.+
T Consensus 230 ~~~~~~~~~~~~~---------~~~~~--------~~~~--~~~~~~~~~~li~~~l~~~p~~Rps~~ell~ 282 (286)
T cd06638 230 ADLHPMRALFKIP---------RNPPP--------TLHQ--PELWSNEFNDFIRKCLTKDYEKRPTVSDLLQ 282 (286)
T ss_pred CCCchhHHHhhcc---------ccCCC--------cccC--CCCcCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 765433111 000 00000 0000 0001123778999999999999999887654
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-11 Score=115.57 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=73.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++....... ......+++.|||||++ .+ ...++.++|||||||++|+|+||+ |
T Consensus 141 ~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~------~~--------~~~~~~~~Dv~slG~~l~el~tg~~~ 204 (301)
T cd07873 141 GELKLADFGLARAKSIPTK--TYSNEVVTLWYRPPDIL------LG--------STDYSTQIDMWGVGCIFYEMSTGRPL 204 (301)
T ss_pred CcEEECcCcchhccCCCCC--cccccceeecccCcHHH------hC--------CCCCccHHHHHHHHHHHHHHHhCCCC
Confidence 457887 44444332211 24457889999999998 32 134667999999999999999999 9
Q ss_pred cchhhhhhee-e----ccccccCcchhhcchhhHHHH--------HHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIR-C----VSTKASDDNIACLGMYMAWME--------KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|...+..... . +...... .+.......+ .....+....+.....+.+++.+||..+|.+||++
T Consensus 205 f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~ 280 (301)
T cd07873 205 FPGSTVEEQLHFIFRILGTPTEE----TWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISA 280 (301)
T ss_pred CCCCCHHHHHHHHHHHcCCCChh----hchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCH
Confidence 9865433111 0 0000000 0000000000 00000001111222347889999999999999998
Q ss_pred hhHHH
Q 009274 156 TNVWK 160 (538)
Q Consensus 156 ~~~~~ 160 (538)
.++.+
T Consensus 281 ~eil~ 285 (301)
T cd07873 281 EEAMK 285 (301)
T ss_pred HHHhc
Confidence 87665
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-11 Score=118.91 Aligned_cols=100 Identities=20% Similarity=0.202 Sum_probs=68.8
Q ss_pred cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh-
Q 009274 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID- 95 (538)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~- 95 (538)
|.++..++. +.+.+=|..|.|||++ ++ -.|+++||+||||++||+||+|+ ||......
T Consensus 461 G~a~~~~~~-----~~tp~~t~~y~APEvl------~~---------~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ 520 (612)
T KOG0603|consen 461 GFWSELERS-----CDTPALTLQYVAPEVL------AI---------QEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGI 520 (612)
T ss_pred chhhhCchh-----hcccchhhcccChhhh------cc---------CCCCcchhhHHHHHHHHHHHhCCCccccCCchH
Confidence 555666554 3346678999999999 32 56889999999999999999999 99764222
Q ss_pred heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.|.+ ...++ ...+.+++ +..+++.++|..+|.+|+.+.++..
T Consensus 521 ei~~-----------~i~~~-~~s~~vS~-----------~AKdLl~~LL~~dP~~Rl~~~~i~~ 562 (612)
T KOG0603|consen 521 EIHT-----------RIQMP-KFSECVSD-----------EAKDLLQQLLQVDPALRLGADEIGA 562 (612)
T ss_pred HHHH-----------hhcCC-ccccccCH-----------HHHHHHHHhccCChhhCcChhhhcc
Confidence 1110 00111 11122222 2567999999999999999987765
|
|
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-11 Score=112.66 Aligned_cols=113 Identities=15% Similarity=0.208 Sum_probs=72.0
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.+ +++.+..... ......|++.|||||.+ .+ ..++.++|+|||||++|+|++|+ |
T Consensus 152 ~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slGvil~~lltg~~p 214 (296)
T cd06655 152 GSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVV------TR---------KAYGPKVDIWSLGIMAIEMVEGEPP 214 (296)
T ss_pred CCEEEccCccchhcccccc--cCCCcCCCccccCcchh------cC---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 4567774 4454443321 13457899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....+.... .+. ... ...+ .........+.+++.+||..+|.+||+..++..
T Consensus 215 f~~~~~~~~~~~~~---------~~~-~~~~---------~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~ 268 (296)
T cd06655 215 YLNENPLRALYLIA---------TNG-TPEL---------QNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ 268 (296)
T ss_pred CCCCCHHHHHHHHH---------hcC-Cccc---------CCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 9875433100 000 000 0000 000011123677999999999999999887665
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-11 Score=111.16 Aligned_cols=93 Identities=18% Similarity=0.378 Sum_probs=62.5
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-ccchhhhhheeeccccccCcchhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (538)
...|++.|||||++ .+ ...++.++|||||||+||+|++ |+ ||..........+
T Consensus 167 ~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~----------- 221 (262)
T cd05077 167 ECVERIPWIAPECV------ED--------SKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERF----------- 221 (262)
T ss_pred cccccccccChhhh------cC--------CCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHH-----------
Confidence 46799999999988 21 2456789999999999999984 77 8876433211000
Q ss_pred cchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
... . ..........+.+++.+||..+|.+||...++.+.+
T Consensus 222 ------~~~-~----~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 222 ------YEG-Q----CMLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred ------Hhc-C----ccCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 000 0 000000112377899999999999999999887754
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-11 Score=113.82 Aligned_cols=132 Identities=13% Similarity=0.094 Sum_probs=73.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++..+.... ......|++.|||||++ .+ ...++.++|+|||||++|+|+||+
T Consensus 137 ~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Dv~slG~il~~l~tg~~ 200 (285)
T cd07861 137 KGVIKLADFGLARAFGIPVR--VYTHEVVTLWYRAPEVL------LG--------SPRYSTPVDIWSIGTIFAEMATKKP 200 (285)
T ss_pred CCcEEECcccceeecCCCcc--cccCCcccccccChHHh------cC--------CCCcCcHHHHHHHHHHHHHHHHCCC
Confidence 3457888 44554432211 13346889999999998 33 134578899999999999999999
Q ss_pred ccchhhhhh-ee-ecc-ccccCcchhhcchhh---HHHHHHHHH----HHhhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 88 QFTKELIDY-IR-CVS-TKASDDNIACLGMYM---AWMEKVTYL----LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 88 pf~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
||.+..... +. .++ ...... ..+.... ......+.. ..........++.+++.+||..+|.+||++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ 278 (285)
T cd07861 201 LFHGDSEIDQLFRIFRILGTPTE--DVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKK 278 (285)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCh--hhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHH
Confidence 997643220 00 000 000000 0000000 000000000 00001112334778999999999999999877
Q ss_pred HHH
Q 009274 158 VWK 160 (538)
Q Consensus 158 ~~~ 160 (538)
+..
T Consensus 279 ll~ 281 (285)
T cd07861 279 ALN 281 (285)
T ss_pred Hhc
Confidence 654
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-08 Score=98.18 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=119.8
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCC---CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFD---KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
+..+.+.+.+.+|+ |+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|++..++++.+.+|...+|.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 45677889999999 7888877643 359999999887543 33344566789999988888778888988777766
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-CCcEEEEE--CCCCceeEEecCCCCCeEEEEEe--CCEEEE
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWS--LLDGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (538)
+..... ......+.. ......+++||+.++..+. +|...+|. +.+++... +..+.......+|+ +++++.
T Consensus 270 d~~~~~--~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 270 NADGSG--LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred ECCCCC--cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEE
Confidence 532111 122211111 1122479999997776554 45555664 44444322 22222334456787 557776
Q ss_pred EecCC---cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 398 GSRDG---TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 398 ~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
.+.++ .|.+||+.+++... +.... .. ....|+|||+.|+.++.++
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~-lt~~~--~~-~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTA-LTDTT--RD-ESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEE-ccCCC--Cc-cCceECCCCCEEEEEEecC
Confidence 66554 69999998887543 32221 11 2258999999988877544
|
|
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-11 Score=112.02 Aligned_cols=113 Identities=13% Similarity=0.206 Sum_probs=71.6
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.++ ++.+..... ......|++.|||||++ .+ ..++.++|+|||||++|+|++|+ |
T Consensus 152 ~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slGv~l~ell~g~~p 214 (285)
T cd06648 152 GRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEVI------SR---------LPYGTEVDIWSLGIMVIEMVDGEPP 214 (285)
T ss_pred CcEEEcccccchhhccCCc--ccccccCCccccCHHHh------cC---------CCCCCcccHHHHHHHHHHHHhCCCC
Confidence 45677744 444332211 13346799999999998 33 45778999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|....+.... .+. ........ ........+.+++.+||..+|++||+..++.+
T Consensus 215 ~~~~~~~~~~~~~~----------~~~~~~~~---------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 215 YFNEPPLQAMKRIR----------DNLPPKLK---------NLHKVSPRLRSFLDRMLVRDPAQRATAAELLN 268 (285)
T ss_pred CcCCCHHHHHHHHH----------hcCCCCCc---------ccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence 9764333111 000 00000000 00001234788999999999999999877654
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-11 Score=119.62 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=40.2
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID 95 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~ 95 (538)
..+||+.|||||++ .+ ..++.++|||||||++|+|++|. ||...+..
T Consensus 198 ~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~ 245 (364)
T cd05599 198 STVGTPDYIAPEVF------LQ---------TGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQ 245 (364)
T ss_pred ccccCccccCHHHH------cC---------CCCCCeeeeecchhHHHHhhcCCCCCCCCCHH
Confidence 46899999999998 33 56789999999999999999999 99876443
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-11 Score=110.16 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhh-hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 12 SVAKVG--CVGSRICDKEVGLF-LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
..+|+. |+++.......... .+.-.+++.|||||++ .+ ..++.++|||||||++|+|++ |.
T Consensus 132 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~~g~ 196 (257)
T cd05115 132 HYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECI------NF---------RKFSSRSDVWSYGITMWEAFSYGQ 196 (257)
T ss_pred CcEEeccCCccccccCCccceeccCCCCCCcccCCHHHH------cc---------CCCCchhhHHHHHHHHHHHhcCCC
Confidence 467887 56655443322100 1123346899999998 32 457789999999999999997 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+..... . ... .........++.+++.+|+..+|++||+..++.+.+...
T Consensus 197 ~p~~~~~~~~~~~~~~--~------~~~------------~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~ 255 (257)
T cd05115 197 KPYKKMKGPEVMSFIE--Q------GKR------------LDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred CCcCcCCHHHHHHHHH--C------CCC------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence 997653331110000 0 000 000012234578899999999999999999988776653
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.4e-11 Score=110.28 Aligned_cols=111 Identities=20% Similarity=0.341 Sum_probs=71.7
Q ss_pred eeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+.+ ++....+... ......|++.|+|||++ .+ ..++.++|+||||+++|+|++|. ||
T Consensus 140 ~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~ape~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~p~ 202 (257)
T cd08225 140 VAKLGDFGIARQLNDSME--LAYTCVGTPYYLSPEIC------QN---------RPYNNKTDIWSLGCVLYELCTLKHPF 202 (257)
T ss_pred eEEecccccchhccCCcc--cccccCCCccccCHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 457774 4555443321 13346799999999998 32 56778999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
............ . ....+ .........+.+++.+|+..+|++||+..++.+
T Consensus 203 ~~~~~~~~~~~~---------~-------~~~~~----~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 203 EGNNLHQLVLKI---------C-------QGYFA----PISPNFSRDLRSLISQLFKVSPRDRPSITSILK 253 (257)
T ss_pred CCccHHHHHHHH---------h-------cccCC----CCCCCCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence 765433111000 0 00000 000111224788999999999999999887654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-11 Score=113.62 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=73.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++........ .....+++.|+|||++ .+ ...++.++|+||||+++|+|++|.
T Consensus 147 ~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~~~aPE~~------~~--------~~~~~~~~Di~slG~~l~~l~~g~~ 210 (295)
T cd07837 147 KGLLKIADLGLGRAFSIPVKS--YTHEIVTLWYRAPEVL------LG--------STHYSTPVDIWSVGCIFAEMSRKQP 210 (295)
T ss_pred CCeEEEeecccceecCCCccc--cCCcccccCCCChHHh------hC--------CCCCCchHHHHHHHHHHHHHHcCCC
Confidence 4578888 555554332211 2235789999999998 22 134678999999999999999999
Q ss_pred ccchhhhhh-ee-eccccccCcchhhcch--hhHHH---HHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDY-IR-CVSTKASDDNIACLGM--YMAWM---EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~-~~-~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+... +. ....-........... ..... ...+..+....+.....+.+++.+||..+|.+||++.++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~ 290 (295)
T cd07837 211 LFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT 290 (295)
T ss_pred CCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 997643321 10 0000000000000000 00000 00000011111122334788999999999999999876643
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-10 Score=110.42 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=73.0
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+.++ ++....... .....|++.|+|||++ .+ ..++.++|+|||||++|+|++|. |
T Consensus 144 ~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~PE~~------~~---------~~~~~~~Di~s~G~~l~~l~~~~~~ 205 (287)
T cd07838 144 GQVKIADFGLARIYSFEMA---LTSVVVTLWYRAPEVL------LQ---------SSYATPVDMWSVGCIFAELFRRRPL 205 (287)
T ss_pred CCEEEeccCcceeccCCcc---cccccccccccChHHh------cc---------CCCCCcchhhhHHHHHHHHHhCCCc
Confidence 56788854 444433221 3356789999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhhee-e----ccccccCcchh----------hcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCc
Q 009274 89 FTKELIDYIR-C----VSTKASDDNIA----------CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP 153 (538)
Q Consensus 89 f~~~~~~~~~-~----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~ 153 (538)
|...+..... . ...... .... ............+.+ ...+.+++.+||+.+|.+||
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~li~~~l~~dp~~Rp 276 (287)
T cd07838 206 FRGTSEADQLDKIFDVIGLPSE-EEWPRNVSLPRSSFPSYTPRSFKSFVPEI--------CEEGLDLLKKMLTFNPHKRI 276 (287)
T ss_pred ccCCChHHHHHHHHHHcCCCCh-HhcCCCcccchhhcccccccchhhhhhhh--------hHHHHHHHHHHhccCCccCC
Confidence 8765432110 0 000000 0000 000000011111111 22367899999999999999
Q ss_pred chhhHHH
Q 009274 154 LLTNVWK 160 (538)
Q Consensus 154 ~~~~~~~ 160 (538)
++.++..
T Consensus 277 ~~~~il~ 283 (287)
T cd07838 277 SAFEALQ 283 (287)
T ss_pred CHHHHhc
Confidence 9887654
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-11 Score=120.77 Aligned_cols=47 Identities=26% Similarity=0.425 Sum_probs=40.5
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID 95 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~ 95 (538)
.++||+.|||||++ .+ ..++.++|||||||+||||++|+ ||...++.
T Consensus 207 ~~~gt~~Y~aPE~~------~~---------~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~ 254 (382)
T cd05625 207 SLVGTPNYIAPEVL------LR---------TGYTQLCDWWSVGVILYEMLVGQPPFLAQTPL 254 (382)
T ss_pred ccccCcccCCHHHh------cC---------CCCCCeeeEEechHHHHHHHhCCCCCCCCCHH
Confidence 57899999999999 33 56789999999999999999999 99875443
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-11 Score=116.70 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=77.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++............+..+++.|||||++ .+ ..++.++||||||+++|+|++ |.
T Consensus 215 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~~g~ 279 (343)
T cd05103 215 NNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI------FD---------RVYTIQSDVWSFGVLLWEIFSLGA 279 (343)
T ss_pred CCcEEEEecccccccccCcchhhcCCCCCCcceECcHHh------cC---------CCCCchhhHHHHHHHHHHHHHCCC
Confidence 3567888 566655333221112235677899999998 33 457789999999999999997 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||......... .. .... ......+ .....+.+++.+|++.+|.+||+..++.+.+..+
T Consensus 280 ~p~~~~~~~~~~-------------~~---~~~~----~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~ 339 (343)
T cd05103 280 SPYPGVKIDEEF-------------CR---RLKE----GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 339 (343)
T ss_pred CCCCCccccHHH-------------HH---HHhc----cCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 98754221000 00 0000 0000000 1112467889999999999999999999988877
Q ss_pred hc
Q 009274 166 II 167 (538)
Q Consensus 166 ~~ 167 (538)
.+
T Consensus 340 ~~ 341 (343)
T cd05103 340 LQ 341 (343)
T ss_pred Hh
Confidence 53
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-11 Score=112.24 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=66.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+. |+++...... .....||+.|||||++ .+ ...++.++|||||||+||+|++|. |
T Consensus 134 ~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~~l~~l~~g~~p 195 (279)
T cd05633 134 GHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVL------QK--------GTAYDSSADWFSLGCMLFKLLRGHSP 195 (279)
T ss_pred CCEEEccCCcceeccccC----ccCcCCCcCccCHHHh------cC--------CCCCCchhhhHHHHHHHHHHHhCCCC
Confidence 457777 5555554332 2246899999999998 21 134678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|......... ....................+.+++.+||..+|.+|++
T Consensus 196 f~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~ 243 (279)
T cd05633 196 FRQHKTKDKH------------------EIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLG 243 (279)
T ss_pred cCCCCCcCHH------------------HHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcC
Confidence 9754222000 00000000000000011224778999999999999996
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=112.12 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=64.6
Q ss_pred cccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-ccchhhhhheeeccccccCcchhhcc
Q 009274 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLG 113 (538)
Q Consensus 36 ~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~ 113 (538)
.+++.|||||++ .+ ..++.++|||||||+||+|+| |. ||.........
T Consensus 184 ~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~--------------- 233 (303)
T cd05088 184 RLPVRWMAIESL------NY---------SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY--------------- 233 (303)
T ss_pred CCcccccCHHHH------hc---------cCCcccccchhhhhHHHHHHhcCCCCcccCChHHHH---------------
Confidence 346789999998 22 446789999999999999998 88 99764333111
Q ss_pred hhhHHHHHHHHHHHh-hhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 114 MYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
...+..... ........+.+++.+||..+|++||++.++...+..++
T Consensus 234 ------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~ 281 (303)
T cd05088 234 ------EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 281 (303)
T ss_pred ------HHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 000000000 00112234778999999999999999998887776654
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-10 Score=109.11 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=62.2
Q ss_pred cccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-ccchhhhhhee-eccccccCcchhhc
Q 009274 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIR-CVSTKASDDNIACL 112 (538)
Q Consensus 36 ~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-pf~~~~~~~~~-~~~~~~~~~~~~~~ 112 (538)
.++..|+|||++ .+ ..++.++|+|||||++|+|+| |. ||......... .+. .. .
T Consensus 156 ~~~~~y~~PE~~------~~---------~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~--~~------~ 212 (251)
T cd05041 156 QIPIKWTAPEAL------NY---------GRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIE--SG------Y 212 (251)
T ss_pred cceeccCChHhh------cc---------CCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHh--cC------C
Confidence 346779999998 33 557889999999999999999 67 98765433111 000 00 0
Q ss_pred chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
... ........+.+++.+||..+|++||++.++.+.+.
T Consensus 213 ~~~-------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 213 RMP-------------APQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred CCC-------------CCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 000 00011234788999999999999999988877553
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-11 Score=112.31 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=70.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+++...............|++.|||||++...... .....++.++|+|||||++|||++ |+
T Consensus 137 ~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~--------~~~~~~~~~~DiwslG~~l~el~~~g~~ 208 (269)
T cd05087 137 LTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGN--------LLVVDQTKESNVWSLGVTIWELFELGSQ 208 (269)
T ss_pred CcEEECCccccccccCcceeecCCCcCCcccccCHhHhcccccc--------ccccCCCccchhHHHHHHHHHHHhCCCC
Confidence 356777 455444332221112346789999999998211000 001245789999999999999996 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||............ ..+.....+..... .....+.+++.+|+ .+|++||+..++++.+
T Consensus 209 p~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l 267 (269)
T cd05087 209 PYRHLSDEQVLTYT----------------VREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLL 267 (269)
T ss_pred CCCCCChHHHHHHH----------------hhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHh
Confidence 99754333111000 00000000000000 11123566888888 6899999999988643
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=110.01 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=62.1
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhh-heeeccccccCcchhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNIAC 111 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~~~ 111 (538)
.+.|++.|+|||++ .+ ..++.++|+|||||++|+|++|. ||...... .+..
T Consensus 171 ~~~~~~~y~~pe~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~------------ 223 (267)
T cd06628 171 SLQGSVFWMAPEVV------KQ---------TSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFK------------ 223 (267)
T ss_pred ccCCCcCccChhHh------cc---------CCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHH------------
Confidence 46799999999998 33 45678999999999999999999 99764222 1000
Q ss_pred cchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 112 LGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.........+ .....+.+++.+||..+|.+||+..++.+
T Consensus 224 ----------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 224 ----------IGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred ----------HhccCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence 0000000000 11223778999999999999999877654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.9e-11 Score=111.58 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=70.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+. |+++.... ...+.|++.|+|||++ .+ ..++.++||||||++||+|++|. |
T Consensus 134 ~~~~l~dfg~~~~~~~------~~~~~~~~~y~~pe~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~p 192 (260)
T cd05611 134 GHLKLTDFGLSRNGLE------NKKFVGTPDYLAPETI------LG---------VGDDKMSDWWSLGCVIFEFLFGYPP 192 (260)
T ss_pred CcEEEeecccceeccc------cccCCCCcCccChhhh------cC---------CCCcchhhhHHHHHHHHHHHHCCCC
Confidence 346676 44444332 2247899999999998 43 34678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|.......+.. .........+..........+.+++.+||..+|+.||++..+.+.
T Consensus 193 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~ 248 (260)
T cd05611 193 FHAETPDAVFD-----------------NILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEI 248 (260)
T ss_pred CCCCCHHHHHH-----------------HHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHH
Confidence 97654431110 000000000000000112347789999999999999987655443
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-11 Score=112.53 Aligned_cols=120 Identities=18% Similarity=0.295 Sum_probs=71.5
Q ss_pred eeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 12 SVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
...|+. |++..+.+..... ....++|++.|||||++ .. ....+.++|+|||||++|+|++|+
T Consensus 139 ~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~------~~--------~~~~~~~~Dv~slG~i~~~l~~g~ 204 (267)
T cd06610 139 GSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVM------EQ--------VHGYDFKADIWSFGITAIELATGA 204 (267)
T ss_pred CCEEEcccchHHHhccCccccccccccccCChhhcChHHH------cc--------ccCcCcccchHhHhHHHHHHHhCC
Confidence 346666 4444444332221 12357899999999998 22 124678999999999999999999
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||............ ....+........ .......+.+++.+||..+|++||+..++..
T Consensus 205 ~p~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 205 APYSKYPPMKVLMLT---------LQNDPPSLETGAD------YKKYSKSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred CCccccChhhhHHHH---------hcCCCCCcCCccc------cccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 99765433111000 0000000000000 0011123678999999999999999777654
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.8e-11 Score=109.78 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=71.5
Q ss_pred eeeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+.++ ++........ ......++..|+|||++ .+ ..++.++|+||||+++|+|++ |.
T Consensus 136 ~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~~~aPe~~------~~---------~~~~~~~Dv~slG~~l~el~~~g~ 199 (256)
T cd05112 136 NQVVKVSDFGMTRFVLDDQYT-SSTGTKFPVKWSSPEVF------SF---------SKYSSKSDVWSFGVLMWEVFSEGK 199 (256)
T ss_pred CCeEEECCCcceeecccCccc-ccCCCccchhhcCHhHh------cc---------CCcChHHHHHHHHHHHHHHHcCCC
Confidence 346788855 4444322111 12234567899999998 33 557789999999999999998 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||.......+. .+.. ... ... .......+.+++.+||+.+|++||++.++.+.
T Consensus 200 ~p~~~~~~~~~~~~~~~-~~~----~~~----------------~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~ 254 (256)
T cd05112 200 TPYENRSNSEVVETINA-GFR----LYK----------------PRLASQSVYELMQHCWKERPEDRPSFSLLLHQ 254 (256)
T ss_pred CCCCcCCHHHHHHHHhC-CCC----CCC----------------CCCCCHHHHHHHHHHcccChhhCCCHHHHHHh
Confidence 99765333111 0000 000 000 00011237789999999999999998887664
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-11 Score=114.00 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=71.6
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+-.|+.+ +++........ ......++..|||||++ .+ ..++.++||||||+++|+|+| |+
T Consensus 140 ~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~t~g~~ 203 (261)
T cd05068 140 NICKVADFGLARVIKEDIYE-AREGAKFPIKWTAPEAA------LY---------NRFSIKSDVWSFGILLTEIVTYGRM 203 (261)
T ss_pred CCEEECCcceEEEccCCccc-ccCCCcCceeccCcccc------cc---------CCCCchhhHHHHHHHHHHHHhcCCC
Confidence 3467774 45555422111 01122334689999998 33 457789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.+.....+. .+. . .... .........+.+++.+|+..+|.+||...++...+.
T Consensus 204 p~~~~~~~~~~~~~~---~-----~~~~-------------~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~ 259 (261)
T cd05068 204 PYPGMTNAEVLQQVD---Q-----GYRM-------------PCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLE 259 (261)
T ss_pred CCCCCCHHHHHHHHH---c-----CCCC-------------CCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHh
Confidence 99875443211 000 0 0000 000111234778999999999999999998877554
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-11 Score=116.94 Aligned_cols=64 Identities=19% Similarity=0.394 Sum_probs=48.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++..... .....||+.|||||++ .+ ...++.++|+|||||+||+|++|+
T Consensus 153 ~~~~kL~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Dv~slGvil~el~~g~~ 213 (342)
T cd07879 153 DCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVI------LN--------WMHYNQTVDIWSVGCIMAEMLTGKT 213 (342)
T ss_pred CCCEEEeeCCCCcCCCCC-----CCCceeeecccChhhh------cC--------ccccCchHHHHHHHHHHHHHHhCCC
Confidence 3568888 455554322 3467899999999998 32 134678999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||.+..
T Consensus 214 pf~~~~ 219 (342)
T cd07879 214 LFKGKD 219 (342)
T ss_pred CCCCCC
Confidence 998754
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-11 Score=112.38 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=72.1
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.++ ++....... ......|++.|+|||++ .+ ...+.++|+||||+++|+|++|+ |
T Consensus 138 ~~~kl~d~~~~~~~~~~~~--~~~~~~~~~~y~ape~~------~~---------~~~~~~~Dv~slG~i~~~l~~g~~~ 200 (256)
T cd08221 138 GLIKLGDFGISKILGSEYS--MAETVVGTPYYMSPELC------QG---------VKYNFKSDIWALGCVLYELLTLKRT 200 (256)
T ss_pred CCEEECcCcceEEcccccc--cccccCCCccccCHhhc------CC---------CCCCCcchhHHHHHHHHHHHHCCCC
Confidence 44678744 444433221 23467899999999998 43 34678999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+. ...... ........+.+++.+||..+|++||++.++.+
T Consensus 201 ~~~~~~~~~~~~~~----------~~~~~~-----------~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~ 252 (256)
T cd08221 201 FDATNPLNLVVKIV----------QGNYTP-----------VVSVYSSELISLVHSLLQQDPEKRPTADEVLD 252 (256)
T ss_pred CCCCCHHHHHHHHH----------cCCCCC-----------CccccCHHHHHHHHHHcccCcccCCCHHHHhh
Confidence 9775443111 000 000000 00111223778999999999999999887654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.4e-08 Score=98.26 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=124.1
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCC---CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC--cEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFD---KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG--GIF 318 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~ 318 (538)
..+..+...+.+.+|+ |++++.++.+ ..|++||+.+++... +..+.+.+.+++|+|++..++++.+.++ .|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3455566778888998 8888877654 479999998876543 3345566778999998887777776655 588
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC-C--cEEEEECCCCceeEEecCCCCCeEEEEEe--CC
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD-R--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG 393 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 393 (538)
+||+.++..... ..... ......++++++.|+..+.. + .|+++|+.+++.. .+..+...+..+.|+ ++
T Consensus 262 ~~d~~~~~~~~l----~~~~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 262 VMDLDGKQLTRL----TNGPG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGD 334 (417)
T ss_pred EEECCCCCEEEC----CCCCC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCC
Confidence 888876532211 11111 11123678899987766543 3 6888888776643 344455666778888 45
Q ss_pred EEEEEecCC---cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 394 VLYSGSRDG---TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 394 ~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
+++.++.++ .|.+||+.++... .+..... .. ...|+|+++.|+..+.++
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~--~~-~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDGGGER-VLTDTGL--DE-SPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEEEEEccCCceEEEEEeCCCCCeE-EccCCCC--CC-CceECCCCCEEEEEEeCC
Confidence 777777765 7899999876543 2222111 11 247899999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-11 Score=114.43 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=64.6
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhhc
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (538)
...|++.|+|||++ .+ ..++.++|+|||||+||+|++|. ||.+.....+.
T Consensus 175 ~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~-------------- 225 (305)
T cd05609 175 QVCGTPEYIAPEVI------LR---------QGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELF-------------- 225 (305)
T ss_pred CCccCccccCchhc------cC---------CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--------------
Confidence 46799999999998 22 45678999999999999999999 99865443111
Q ss_pred chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
. .........+.. .......+.+++.+||+.+|++||+.+.+.+.+..
T Consensus 226 ~---~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 226 G---QVISDDIEWPEG-DEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred H---HHHhcccCCCCc-cccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence 0 000000000000 00112237889999999999999997665554444
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-10 Score=109.40 Aligned_cols=113 Identities=17% Similarity=0.237 Sum_probs=74.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++...... ....++..|+|||++ .+ ..++.++|+||||+++|+|++ |+
T Consensus 138 ~~~~~l~d~g~~~~~~~~~-----~~~~~~~~~~ape~~------~~---------~~~~~~~Di~slG~il~~l~~~g~ 197 (256)
T cd05039 138 DLVAKVSDFGLAKEASQGQ-----DSGKLPVKWTAPEAL------RE---------KKFSTKSDVWSFGILLWEIYSFGR 197 (256)
T ss_pred CCCEEEccccccccccccc-----ccCCCcccccCchhh------cC---------CcCCcHHHHHHHHHHHHHHHhcCC
Confidence 3467888 4556654321 134567789999998 33 567789999999999999998 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .+... .. .. .+ ......+.+++.+||..+|.+||+..++...+..
T Consensus 198 ~p~~~~~~~~~~~~~~~~--------~~-~~-----~~-------~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 255 (256)
T cd05039 198 VPYPRIPLKDVVPHVEKG--------YR-ME-----AP-------EGCPPEVYKVMKDCWELDPAKRPTFKQLREQLAL 255 (256)
T ss_pred CCCCCCCHHHHHHHHhcC--------CC-CC-----Cc-------cCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence 99765444211 00000 00 00 00 0112247789999999999999999988876653
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-10 Score=109.64 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=71.2
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+.. +++...+.... ......|+..|+|||++ .+ ..++.++|||||||+||+|++ |.
T Consensus 137 ~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~~pe~~------~~---------~~~~~~~Di~slG~~l~~l~~~g~~ 200 (256)
T cd05113 137 GCVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVL------LY---------SKFSSKSDVWAFGVLMWEVYSLGKM 200 (256)
T ss_pred CCEEECCCccceecCCCcee-ecCCCccChhhCCHHHH------hc---------CcccchhHHHHHHHHHHHHhcCCCC
Confidence 4678884 55554433211 01123466789999998 33 457789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||.......+. .+. +. .. . .........+.+++.+||..+|.+||+..++...
T Consensus 201 p~~~~~~~~~~~~~~--~~-----~~-~-------------~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~ 254 (256)
T cd05113 201 PYERFNNSETVEKVS--QG-----LR-L-------------YRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSS 254 (256)
T ss_pred CcCcCCHHHHHHHHh--cC-----CC-C-------------CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence 99764332111 000 00 00 0 0000112247789999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-11 Score=111.98 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=70.1
Q ss_pred eeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccc
Q 009274 14 AKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 14 ~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~ 90 (538)
.|+.+ ++..+..... ....+.|++.|+|||++ .+ ..+..++.++|+|||||++|+|+||. ||.
T Consensus 140 ~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~Pe~~------~~------~~~~~~~~~~Di~slG~~l~~~~tg~~p~~ 205 (262)
T cd06613 140 VKLADFGVSAQLTATIA--KRKSFIGTPYWMAPEVA------AV------ERKGGYDGKCDIWALGITAIELAELQPPMF 205 (262)
T ss_pred EEECccccchhhhhhhh--ccccccCCccccCchhh------cc------cccCCcCchhhhHHHHHHHHHHHhCCCCCC
Confidence 56774 4444432211 13457899999999998 32 00125678999999999999999999 997
Q ss_pred hhhhhhee-eccccccCcchhhcc-hhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 91 KELIDYIR-CVSTKASDDNIACLG-MYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
........ ... ... .+..... ....+ ..+.+++.+||..+|..||+..++..
T Consensus 206 ~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~--------~~~~~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 206 DLHPMRALFLIS---------KSNFPPPKLKD-KEKWS--------PVFHDFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred CCCHHHHHHHHH---------hccCCCccccc-hhhhh--------HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 65433111 000 000 0000000 01111 13778999999999999999877643
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=91.91 Aligned_cols=240 Identities=17% Similarity=0.230 Sum_probs=158.9
Q ss_pred eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC-CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC
Q 009274 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF-PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (538)
Q Consensus 284 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 362 (538)
.+..+++|.+.|++....|..+ -+++.+.|.++++|--+. ++.-..+..... ....+.+.......|++|-..|
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP----~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMP----SPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCC----CCceEeeeeccceEEEEEEecc
Confidence 4566788988888888777544 458999999999995433 222222222211 2223455666677999999999
Q ss_pred cEEEEECC----CCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 009274 363 TIKAWSLL----DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (538)
Q Consensus 363 ~i~iwd~~----~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (538)
++.-+.+. .....+....|...|..+-|+ ...+++.+.|..+.---.+.+..+........... +.+. -
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~---~~~d--~ 165 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASA---LQFD--A 165 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCC---Ccee--e
Confidence 99988664 344556667899999999999 66999999998776555555544332221111000 0111 1
Q ss_pred CEEEEEeCCCcEEEEe----CCcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCC
Q 009274 437 HTLVVSHESGSIKVWR----NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGS 510 (538)
Q Consensus 437 ~~l~~~~~dg~i~iwd----~~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 510 (538)
.+...|...|.|..-. .-.++.++.+|.+.+.+++| ..+.|.+|..|..+.+||+-..+........ +..
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g----h~~ 241 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG----HND 241 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc----chh
Confidence 1556666777776654 23578889999999999999 4568999999999999999876543322211 111
Q ss_pred ceEEEEEe--CCEEEEEECCCeEEEEEcC
Q 009274 511 VITALLYW--QGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 511 ~~~~~~~~--~~~l~sg~~dg~v~vw~~~ 537 (538)
.+..+..- -.++++++.||.|.+|+++
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 22222222 3469999999999999986
|
|
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-10 Score=109.99 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=76.4
Q ss_pred eeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+.+|++ |+++.+...... .......|+..|+|||++ .+ ..+++++|||||||++|+|+|+.
T Consensus 146 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~------~~---------~~~~~~~Di~slG~il~ellt~~~ 210 (284)
T cd05079 146 HQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECL------IQ---------SKFYIASDVWSFGVTLYELLTYCD 210 (284)
T ss_pred CCEEECCCccccccccCccceeecCCCCCCccccCHHHh------cc---------CCCCccccchhhhhhhhhhhcCCC
Confidence 457887 566665443221 112356788899999998 33 56778999999999999999988
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHH-HHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
|+............ ... ............... ...........+.+++.+||+.+|++||+..++.+.+..+
T Consensus 211 ~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 211 SESSPMTLFLKMIG-PTH-----GQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred CCccccchhhhhcc-ccc-----ccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 55432111000000 000 000000000000000 0000111223588999999999999999999988876653
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-10 Score=111.37 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=71.1
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++.+..... ......|++.|||||++ .+. ......++.++|||||||++|+|++|+ ||
T Consensus 166 ~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~~----~~~~~~~~~~~Di~slGvi~~el~~g~~p~ 233 (291)
T cd06639 166 GVKLVDFGVSAQLTSTRL--RRNTSVGTPFWMAPEVI------ACE----QQYDYSYDARCDVWSLGITAIELGDGDPPL 233 (291)
T ss_pred CEEEeecccchhcccccc--cccCccCCccccChhhh------cCC----CCcccccCCccchHHHHHHHHHHhhCCCCC
Confidence 46787 45555443211 12347899999999998 220 001124678999999999999999999 99
Q ss_pred chhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
...... .+..+. ... ..... ........+.+++.+||..+|++||+..++..
T Consensus 234 ~~~~~~~~~~~~~---------~~~-~~~~~---------~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~ 286 (291)
T cd06639 234 FDMHPVKTLFKIP---------RNP-PPTLL---------HPEKWCRSFNHFISQCLIKDFEARPSVTHLLE 286 (291)
T ss_pred CCCcHHHHHHHHh---------cCC-CCCCC---------cccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 765332 111000 000 00000 00011123778999999999999999887654
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-10 Score=119.60 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=49.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+.+.... .....+||+.|||||++ .+ ..++.++|||||||+||||++|.
T Consensus 303 ~~~vkL~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvil~ell~~~~ 366 (501)
T PHA03210 303 DGKIVLGDFGTAMPFEKEREA-FDYGWVGTVATNSPEIL------AG---------DGYCEITDIWSCGLILLDMLSHDF 366 (501)
T ss_pred CCCEEEEeCCCceecCccccc-ccccccCCcCCCCchhh------cC---------CCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3467888 677776654322 23458999999999999 44 55788999999999999999998
Q ss_pred -ccc
Q 009274 88 -QFT 90 (538)
Q Consensus 88 -pf~ 90 (538)
||.
T Consensus 367 ~p~~ 370 (501)
T PHA03210 367 CPIG 370 (501)
T ss_pred CCcc
Confidence 554
|
|
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-10 Score=109.94 Aligned_cols=116 Identities=16% Similarity=0.297 Sum_probs=70.6
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+.+ +++.+..... ......|++.|+|||++ .+ ....++.++|+||||+++|+|++|+ |
T Consensus 146 ~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~------~~-------~~~~~~~~~Dv~slGvvl~~l~~g~~p 210 (268)
T cd06624 146 GVVKISDFGTSKRLAGINP--CTETFTGTLQYMAPEVI------DK-------GPRGYGAPADIWSLGCTIVEMATGKPP 210 (268)
T ss_pred CeEEEecchhheecccCCC--ccccCCCCccccChhhh------cc-------ccccCCchhhhHHHHHHHHHHHhCCCC
Confidence 3567874 4444432221 13456799999999998 22 1123678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .... ......+..+ ......+.+++.+||..+|.+||++.++..
T Consensus 211 ~~~~~~~~~~------------~~~~--~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 211 FIELGEPQAA------------MFKV--GMFKIHPEIP----ESLSAEAKNFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred CccccChhhh------------Hhhh--hhhccCCCCC----cccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence 8653221000 0000 0000000000 011223778999999999999999887654
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-10 Score=114.61 Aligned_cols=63 Identities=19% Similarity=0.425 Sum_probs=48.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....||+.|+|||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 155 ~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~~l~~l~~g~~p 216 (353)
T cd07850 155 CTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMIRGTVL 216 (353)
T ss_pred CCEEEccCccceeCCCCCC---CCCCcccccccCHHHH------hC---------CCCCCchhhHhHHHHHHHHHHCCCC
Confidence 457888 55666544321 3457899999999998 33 45778999999999999999999 9
Q ss_pred cchh
Q 009274 89 FTKE 92 (538)
Q Consensus 89 f~~~ 92 (538)
|...
T Consensus 217 f~~~ 220 (353)
T cd07850 217 FPGT 220 (353)
T ss_pred CCCC
Confidence 9764
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 538 | ||||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-07 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-11 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 7e-09 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-11 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-11 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-11 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-11 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-11 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 6e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-10 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-08 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 9e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-08 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 9e-08 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 6e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-10 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-10 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 3e-09 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-09 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-09 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 5e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 5e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 9e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 9e-07 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 4e-06 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 4e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 4e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 6e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 7e-04 |
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 538 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.98 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.81 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.78 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.78 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.77 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.76 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.76 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.76 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.75 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.75 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.75 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.75 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.74 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.74 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.74 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.73 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.73 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.73 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.73 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.73 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.73 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.73 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.73 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.72 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.72 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.72 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.72 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.72 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.72 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.71 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.69 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.66 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.66 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.65 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.62 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.61 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.61 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.61 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.6 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.6 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.58 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.58 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.57 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.57 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.57 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.57 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.56 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.54 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.53 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.53 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.52 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.51 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.51 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.5 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.5 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.49 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.49 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.48 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.48 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.48 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.47 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.47 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.47 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.47 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.46 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.46 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.46 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.46 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.45 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.45 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.45 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.45 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.44 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.44 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.44 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.44 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.44 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.43 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.43 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.43 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.43 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.43 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.43 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.42 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.42 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.42 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.41 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.41 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.41 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.41 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.41 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.41 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.41 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.4 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.4 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.4 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.4 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.4 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.4 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.4 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.4 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.39 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.39 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.39 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.39 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.38 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.38 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.38 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.38 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.38 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.38 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.38 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.38 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.38 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.38 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.38 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.38 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.37 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.37 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.37 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.37 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.37 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.37 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.37 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.37 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.37 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.36 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.36 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.36 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.36 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.36 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.36 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.36 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.36 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.36 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.36 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.36 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.36 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.36 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.36 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.36 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.35 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.35 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.35 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.35 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.35 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.35 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.35 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.35 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.35 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.35 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.34 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.34 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.34 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.34 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.34 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.34 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.34 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.34 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.34 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.34 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.34 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.33 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.33 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.33 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.33 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.33 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.33 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.33 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.33 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.33 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.33 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.33 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.32 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.32 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.32 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.32 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.32 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.32 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.32 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.32 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.32 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.32 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.32 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.32 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.32 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.31 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.31 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.31 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.31 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.31 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.31 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.31 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.31 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.31 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.31 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.31 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.31 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.31 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.31 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.31 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.3 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.3 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.3 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.3 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.3 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.3 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.3 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.3 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.3 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.3 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.3 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.3 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.29 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.29 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.29 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.29 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.29 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.29 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.29 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.29 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.29 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.29 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.29 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.28 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.28 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.28 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.28 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.28 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.28 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.28 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.28 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.28 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.28 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.28 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.28 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.28 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.28 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.27 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.27 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.27 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.27 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.27 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.27 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.27 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.27 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.26 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.26 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.26 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.26 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.26 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.26 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.26 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.26 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.26 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.26 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.26 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.26 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.25 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.25 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.25 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.25 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.25 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.25 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.24 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.24 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.24 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.24 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.24 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.24 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.24 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.23 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.23 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.23 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.23 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.23 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.23 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.23 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.23 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.23 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.23 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.23 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.23 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.23 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.23 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.23 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.22 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.22 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.22 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.22 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.22 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.22 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.21 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.21 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.2 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.2 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.2 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.2 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.2 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.2 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.19 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.19 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.18 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.18 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.18 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.18 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.17 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.15 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.14 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.14 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.14 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.13 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.1 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.09 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.09 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.09 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.07 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.07 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.06 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.06 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.05 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.03 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.03 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.98 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.97 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.95 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.94 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.89 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.87 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.87 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.87 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.86 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.86 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.86 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.83 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.79 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.78 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.77 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.77 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.76 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.75 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.75 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 98.75 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.68 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.67 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.67 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.62 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.61 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.59 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.57 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.51 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 98.46 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.46 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=320.63 Aligned_cols=278 Identities=23% Similarity=0.338 Sum_probs=235.2
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+.+|.++|++++|+ ++++++|+.||+|++||+.+++....+++|.+.|.+++|+|+ +.++++|+.|++|++||+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETT
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Confidence 4578999999999999 899999999999999999999999999999999999999985 5588999999999999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecC
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d 401 (538)
+.... ..+..+.. .....+++|+++++++|+.|++|++||+++++++..+.+|...|.++.++ +.++++|+.|
T Consensus 181 ~~~~~---~~~~~h~~--~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 181 GFECI---RTMHGHDH--NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp SSCEE---ECCCCCSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcee---EEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 65432 22333322 23456888999999999999999999999999999999999999999999 5599999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCC--cceee
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV--------------------QHTLVVSHESGSIKVWRND--KFMKS 459 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~--~~~~~ 459 (538)
++|++||+++++....+..+. ..+. +++|+|+ +.++++|+.|+.|++||.. .++..
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h~-~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~ 333 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREHR-HVVE-CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 (410)
T ss_dssp SCEEEEETTTCCEEEEECCCS-SCEE-EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCceeeEecCCC-ceEE-EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 999999999999888887653 3444 4688886 6789999999999999965 46778
Q ss_pred eccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CC-EEEEEECCCeEEEEE
Q 009274 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QG-KLFVGCADRTVKVYY 535 (538)
Q Consensus 460 ~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~sg~~dg~v~vw~ 535 (538)
+.+|...|.++.+ ++++|++|+.||.|++||+.+++....... +...+.++.+. ++ .|++|+.||+|++|+
T Consensus 334 ~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-----HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-----CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC-----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 8999999999987 889999999999999999988776544432 33355666554 44 588999999999998
Q ss_pred c
Q 009274 536 Y 536 (538)
Q Consensus 536 ~ 536 (538)
+
T Consensus 409 ~ 409 (410)
T 1vyh_C 409 C 409 (410)
T ss_dssp -
T ss_pred C
Confidence 6
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=305.64 Aligned_cols=286 Identities=20% Similarity=0.323 Sum_probs=236.9
Q ss_pred cCCeEEEEEeecCCCcEEEEEEc------CCEEEEEeCCCcEEEEeCCCCce--EEEEecCCcCeEEEEEecCCCCEEEE
Q 009274 239 SKGNVKFKDLQGHRDCVTGLAVG------GGFLFSSSFDKSIHVWSLKDFSH--VHTFKGHDHKVMAVVYVDEDQPLCIS 310 (538)
Q Consensus 239 ~~~~~~i~~l~~h~~~V~~l~~~------~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s 310 (538)
..-.+.+..+++|.++|++++|+ +++|+||+.|++|++||+.+++. ...+.+|...|.+++|+++ ..++++
T Consensus 19 ~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s 97 (321)
T 3ow8_A 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAAS 97 (321)
T ss_dssp --CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEE
T ss_pred hhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-CCEEEE
Confidence 33455567788999999999996 46899999999999999987654 4568899999999999885 458899
Q ss_pred EcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEE
Q 009274 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390 (538)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 390 (538)
++.|++|++||+.+++....+. .+.. .....+++|++++|++|+.||.|++||+++++....+..|...|.+++|
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~---~~~~--~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSID---AGPV--DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEE---CCTT--CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred EeCCCcEEEEECCCCCEEEEEe---CCCc--cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence 9999999999998765433322 2211 1224689999999999999999999999999999999999999999999
Q ss_pred e--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccce
Q 009274 391 C--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGS 466 (538)
Q Consensus 391 ~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~ 466 (538)
+ +++|++|+.|+.|++||+++++.+..+..+.. .+.. ++|+|++++|++|+.|+.|++||.+ +....+.+|...
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~-l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM-PIRS-LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CCCE-EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC-ceeE-EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence 9 56999999999999999999999988876643 3333 7999999999999999999999964 467788999999
Q ss_pred EEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEEcC
Q 009274 467 VFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 467 v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~~~ 537 (538)
|.+++| ++++|++++.|++|++||+.+++....... +...+..+.+ +++ .|++++.||.|++||..
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-----CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999987 899999999999999999999887665432 3334555555 444 58999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=299.36 Aligned_cols=281 Identities=18% Similarity=0.280 Sum_probs=228.6
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
...+.+|.+.|++++|+ +++|++|+.||+|++||+++++.+..+..|..+|.+++|+|+ +.++++|+.|++|++||+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-CCEEEEECCCCEEEEEEC
Confidence 35689999999999999 899999999999999999999999999999999999999995 558899999999999999
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEeC---CEEEEE
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVCN---GVLYSG 398 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~---~~l~s~ 398 (538)
.++.... .+..+.. ....++++|+++++++|+.|++|++||++++ .....+.+|...|.+++|++ .+|++|
T Consensus 85 ~~~~~~~---~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 85 NTGEKVV---DFEAHPD--YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp TTCCEEE---EEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEE---EEeCCCC--cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 8765433 3333332 2335688899999999999999999999887 45667899999999999983 489999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC--CCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-- 472 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~-- 472 (538)
+.|++|++||++++.....+..++...+.. +.+.| ++.+|++|+.|++|++||.+ +++..+.+|...|.++.+
T Consensus 160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCEEE-EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCCccceeccCCcCcEEE-EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 999999999999888777776555444443 46655 78899999999999999965 567889999999999887
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE-EeCCE--EEEEECCCeEEEEEcC
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL-YWQGK--LFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--l~sg~~dg~v~vw~~~ 537 (538)
++.+|++|+.||+|++||+.+.+....... +...+.++. ++++. +++++.|..+.+|++.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~ 301 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNV-----GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECC-----SSSSEEEEEECTTCGGGCEEEEETTEEEEEECC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccC-----CCccEEEEEECCCCCceEEEEecCCceEEEEec
Confidence 888999999999999999999887665543 222344444 55542 3444445557888775
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=299.92 Aligned_cols=281 Identities=16% Similarity=0.266 Sum_probs=229.6
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
....+.+|.++|++++|+ +++|++|+.||+|++||+.+++.+..+..|...|.+++|+|+ +.++++|+.|+.|++||
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEE
Confidence 356799999999999999 899999999999999999999999999999999999999995 55889999999999999
Q ss_pred ccCCCCCcc-eeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 009274 322 FSFPLGHEP-LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (538)
Q Consensus 322 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (538)
+.+...... ......+.. ......+++++ .+++++.|++|++||+++++.+..+.+|.+.|.+++|+ +.++++|
T Consensus 126 ~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTG--YLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSS--CEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCc--cEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 987543222 222333332 22234556655 58999999999999999999999999999999999999 4599999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeec--cccceEEEEEe--
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQ--THKGSVFAVFL-- 472 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~--~h~~~v~~~~~-- 472 (538)
+.|++|++||+++++....+..+. ..+.. ++|+|++++|++|+.||+|++||.+. ....+. .+...|.+++|
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~-~~v~~-v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHE-SDINA-ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred eCCCcEEEEECCCCeeEEEEcCCc-CCEEE-EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 999999999999999988887664 34444 79999999999999999999999764 333333 23357888877
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEE
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYY 535 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~ 535 (538)
++++|++|+.||.|++||+.+.+....... +...+.++.+ +++ .|++|+.||.|++||
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEECCCCeEEEEEcccCcEeeEeec-----CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999988776554432 3345566555 455 488999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=300.52 Aligned_cols=279 Identities=17% Similarity=0.185 Sum_probs=217.1
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC-----------CCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK-----------DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~-----------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 315 (538)
..|...|.+++|+ |++|++++ |+++++||.. ..........|...|.+++|+|+ ..+++|+.||
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEETTS
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEECCC
Confidence 3577889999999 88888777 7788888732 11111222346678999999985 3678999999
Q ss_pred cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C-
Q 009274 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N- 392 (538)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~- 392 (538)
+|++||+.+++...........+. .....+++++++++|++|+.|++|++||+++++++..+.+|.+.|++++|+ +
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~-~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHD-DIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred EEEEEeccCCCceeEeeccccCCC-CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 999999998766544443222222 223356889999999999999999999999999999999999999999998 2
Q ss_pred CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEE
Q 009274 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFA 469 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~ 469 (538)
.++++|+.|++|++||+++++....+...........++++| +++++++|+.||.|++||.+ +++..+.+|...|.+
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~ 262 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE
T ss_pred CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE
Confidence 478999999999999999999988876554444445578887 46789999999999999954 578889999999999
Q ss_pred EEe--CC-CEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC--EEEEEECCCeEEEEEcC
Q 009274 470 VFL--EG-KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG--KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 470 ~~~--~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~l~sg~~dg~v~vw~~~ 537 (538)
++| ++ ++|++|+.|++|++||+.++++..... |...+..+.| +++ .|++|+.||+|++|++.
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~------H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA------HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC------CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 987 55 589999999999999999988654332 3345666655 444 35689999999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=306.51 Aligned_cols=291 Identities=21% Similarity=0.292 Sum_probs=227.6
Q ss_pred CeEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 241 ~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
.......+.+|.+.|++++|+ +++|+||+.||+|++||+.+++....++.|...|.+++|+|+ +.++++|+.|+.++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~ 133 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACS 133 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEE
Confidence 344667899999999999999 899999999999999999999999999999999999999995 55789999999999
Q ss_pred EEEccCCCCC----cceeeecccCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCceeEEe-----cCCCCCeEEE
Q 009274 319 VWSFSFPLGH----EPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTM-----SGHKSAVSTL 388 (538)
Q Consensus 319 vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l 388 (538)
+||+.+.... ........+... . ....+.++ +..|++|+.|++|++||+++++.+..+ .+|...|.++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~-v-~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGY-A-SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSC-C-CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcc-e-EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 9999754321 122222233221 1 12345554 457999999999999999999988877 6799999999
Q ss_pred EEe---CCEEEEEecCCcEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeecc
Q 009274 389 AVC---NGVLYSGSRDGTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT 462 (538)
Q Consensus 389 ~~~---~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~ 462 (538)
+|+ ++++++|+.|++|++||++. ++.+..+..|. ..+.. ++|+|++++|++|+.||+|++||.++ .+..+..
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~-~~v~~-v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE-GDINS-VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS-SCCCE-EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC-CCeEE-EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 996 46999999999999999984 56677776653 44444 69999999999999999999999664 4444443
Q ss_pred cc-------ceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeE
Q 009274 463 HK-------GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTV 531 (538)
Q Consensus 463 h~-------~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v 531 (538)
+. ..|.+++| +|++|++|+.||.|++||+..++........... +...+.++.+ +++ .|++|+.||.|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCE
Confidence 32 23666665 8999999999999999999888765544322111 3334455444 555 58889999999
Q ss_pred EEEEcC
Q 009274 532 KVYYYG 537 (538)
Q Consensus 532 ~vw~~~ 537 (538)
++|+++
T Consensus 369 ~iW~~~ 374 (380)
T 3iz6_a 369 KIWAFS 374 (380)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999986
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=295.40 Aligned_cols=282 Identities=20% Similarity=0.245 Sum_probs=230.1
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
....+.+|.+.|++++|+ +++|+||+.||+|++||..+++....+..|...|.+++|+|+ +.++++|+.|+.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEE
Confidence 356799999999999999 899999999999999999999999999999999999999995 55889999999999999
Q ss_pred ccCCCCCc---ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe----CCE
Q 009274 322 FSFPLGHE---PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC----NGV 394 (538)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~ 394 (538)
+....... .......+. ......+++++++.+++|+.|++|++||+++++++..+.+|...|.+++++ +++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHT--NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccC--CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 87543221 122222222 223356788899999999999999999999999999999999999999997 359
Q ss_pred EEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeecc--ccceEEEE
Q 009274 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT--HKGSVFAV 470 (538)
Q Consensus 395 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--h~~~v~~~ 470 (538)
+++|+.|++|++||+++++++..+..|. ..+.. ++|+|++++|++|+.|++|++||.+. ....+.. +...+.++
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~-~~v~~-v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHE-SDVNS-VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCC-CCeEE-EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence 9999999999999999999988887664 34444 69999999999999999999999764 3333333 33467777
Q ss_pred Ee--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEE
Q 009274 471 FL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYY 535 (538)
Q Consensus 471 ~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~ 535 (538)
.| ++++|++|+.|+.|++||+.+++....... +...+.++.+ +++ .|++|+.||+|++|+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC-----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 76 899999999999999999988765544322 3345555555 455 488999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=290.08 Aligned_cols=284 Identities=21% Similarity=0.363 Sum_probs=232.4
Q ss_pred eEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
......+.+|.+.|++++|+ +++|++|+.||.|++||+.+++....+.+|...|.+++|+|+ +.++++++.|+.|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEE
Confidence 34567899999999999999 899999999999999999999999999999999999999995 568899999999999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEE
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (538)
||+.++.... .+..+.. .....+++++++++++|+.|+.|++||+++++.+..+..|..+|.+++|+ +.++++
T Consensus 92 wd~~~~~~~~---~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 92 WDVSSGKCLK---TLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp EETTTCCEEE---EEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCcEEE---EEcCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 9998765333 2333322 23356788999999999999999999999999999999999999999999 559999
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEE----EE
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFA----VF 471 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~----~~ 471 (538)
++.|+.|++||+++++.+..+...+...+. .++++|+++++++++.||.|++||..+ ....+.+|.....+ ..
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCCCEE-EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCCceE-EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 999999999999999988877655444444 479999999999999999999999654 56677777654322 23
Q ss_pred e-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEE-EEEeCC-EEEEEE--CCCeEEEEEcC
Q 009274 472 L-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA-LLYWQG-KLFVGC--ADRTVKVYYYG 537 (538)
Q Consensus 472 ~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~l~sg~--~dg~v~vw~~~ 537 (538)
+ ++.+|++|+.||.|++||+.+++....... +...+.. .+.+++ .+++++ .|+.|++|+..
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-----HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECC-----CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhc-----cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2 788999999999999999999887655432 2234444 444554 466676 69999999964
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=291.65 Aligned_cols=288 Identities=20% Similarity=0.256 Sum_probs=217.1
Q ss_pred EEEEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCC--ceEEEE-ec-CCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDF--SHVHTF-KG-HDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
.+..+.+|.++|++++|++++|++|+.|++|++||+.++ +....+ .+ |...|.+++|+|+ +.++++|+.|++|++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~i 84 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEE
Confidence 567899999999999999779999999999999999875 455666 44 9999999999995 468899999999999
Q ss_pred EEccCCCC----CcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC----CceeEEecCCCCCeEEEEEe
Q 009274 320 WSFSFPLG----HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD----GTLSCTMSGHKSAVSTLAVC 391 (538)
Q Consensus 320 wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~ 391 (538)
||+..... ......+..+.. ....++++|++++|++|+.|++|++||++. .+++..+.+|...|.+++|+
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHEN--EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEcccCcCccccceeEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 99864321 122233333322 233568889999999999999999999943 24677889999999999999
Q ss_pred --CCEEEEEecCCcEEEEECCCC--ceeEEEecCCCCceEEEEEEcCC--CCEEEEEeCCCcEEEEeCCc----------
Q 009274 392 --NGVLYSGSRDGTIRLWSLSDH--SLLTVLEEDSSGAVSSVLSLTAV--QHTLVVSHESGSIKVWRNDK---------- 455 (538)
Q Consensus 392 --~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~---------- 455 (538)
+.+|++|+.|++|++||..++ +++..+..| ...+.. +.|+|+ +..|++|+.|++|++||...
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~-~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWS-SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEE-EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEE-EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 559999999999999999876 466666665 344444 689998 67899999999999999542
Q ss_pred ceeeecc-ccceEEEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCC-ceEEEEE-e--CC-EEEEEECC
Q 009274 456 FMKSMQT-HKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGS-VITALLY-W--QG-KLFVGCAD 528 (538)
Q Consensus 456 ~~~~~~~-h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~-~l~sg~~d 528 (538)
....+.. |...|.+++| ++.+|++++.||.|++||..+++.......... +.. .+.++.+ + ++ .|++|+.|
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~--h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC--HGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT--TTTSCEEEEEEC-----CCEEEEETT
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc--cccceEEEEEEecCCCceEEEEecCC
Confidence 2334444 8999999998 567899999999999999987743222111111 222 4555554 3 33 58899999
Q ss_pred CeEEEEEcCC
Q 009274 529 RTVKVYYYGK 538 (538)
Q Consensus 529 g~v~vw~~~~ 538 (538)
|.|++|++.+
T Consensus 319 g~v~~W~~~~ 328 (330)
T 2hes_X 319 GIVNFWSLEK 328 (330)
T ss_dssp SEEEEEEC--
T ss_pred CcEEEEEecc
Confidence 9999999863
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=299.46 Aligned_cols=281 Identities=17% Similarity=0.196 Sum_probs=218.0
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeC------CCcEEEEeCCCCce----EEEEecCCcCeEEEEEecCCCCEEEEEcCCC
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSF------DKSIHVWSLKDFSH----VHTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~------dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 315 (538)
..+|.+.|++++|+ |++|++|+. |++|++|+..++.. .....+|...|.+++|+|++ .+++++.||
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--GILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTS
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--CEEEEECCC
Confidence 35799999999999 999999997 78899999877643 33445789999999999964 356788899
Q ss_pred cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---C
Q 009274 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---N 392 (538)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~ 392 (538)
+|++||+.+++...........+. .....++++|++++|++|+.|+.|++||+++++.+..+.+|...|++++|+ +
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHD-DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp CEEEC--------CCCCEEECCCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred EEEEeeccccceeEEEeeccCCCC-CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 999999987765433332221111 223456889999999999999999999999999999999999999999998 2
Q ss_pred CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCC-CCEEEEEeCCCcEEEEeCC--cceeeeccccceEEE
Q 009274 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFA 469 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~ 469 (538)
.++++++.|++|++||+++++....+...........++|+|+ +.++++|+.|+.|++||.+ +....+.+|...|.+
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence 4899999999999999999988776654433334445789987 5689999999999999965 467888999999999
Q ss_pred EEe--CC-CEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e-CC-EEEEEECCCeEEEEEcC
Q 009274 470 VFL--EG-KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W-QG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 470 ~~~--~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~l~sg~~dg~v~vw~~~ 537 (538)
++| ++ ++|++|+.||+|+|||+++++...... +...+..+.| | ++ .|++|+.||+|++|++.
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~------H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS------HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC------CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 987 54 689999999999999999988765543 3345666665 3 44 68899999999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=304.18 Aligned_cols=265 Identities=23% Similarity=0.404 Sum_probs=232.5
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
..+.++.+.+.+..+++++.++.+++|+ +.+|.+.|++++|+ +++|++|+.|++|++||+.+++.+..+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 4688899999999999999999999998 56899999999998 899999999999999999999999999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
.+|...|.+++|+|+ +.++++|+.|++|++||+.++... ..+..+.. ......++++++++++|+.|++|++||
T Consensus 189 ~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~---~~~~~h~~--~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCV---KTFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEE---EEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEE---EEEeCCCc--cEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 999999999999995 457899999999999999876543 33333332 223457788999999999999999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEeC----------------------CEEEEEecCCcEEEEECCCCceeEEEecCCCCce
Q 009274 369 LLDGTLSCTMSGHKSAVSTLAVCN----------------------GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426 (538)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~~----------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 426 (538)
++++++...+.+|...|.+++|++ .++++|+.|++|++||+++++++..+..|. ..+
T Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~-~~v 341 (410)
T 1vyh_C 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWV 341 (410)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCE
T ss_pred CCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC-CcE
Confidence 999999999999999999999973 379999999999999999999998888763 444
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 427 SSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
.. ++|+|++++|++|+.||.|++||.. ++...+.+|...|.+++| ++.+|++|+.||+|++|+++
T Consensus 342 ~~-v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 342 RG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EE-EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EE-EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 44 6999999999999999999999954 567889999999999988 78899999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=288.62 Aligned_cols=264 Identities=20% Similarity=0.324 Sum_probs=226.9
Q ss_pred ccceeeeecc----CcceeEEeecCCeEEEEE-----------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC
Q 009274 220 ADIDQARAAG----GVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF 282 (538)
Q Consensus 220 ~~~~~~~~~~----~~~~~~~~~~~~~~~i~~-----------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~ 282 (538)
..|..+.+.+ ++..+++++.++.+++|+ +.+|...|.+++++ +.++++++.|++|++||+.++
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~ 112 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG 112 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3466666654 356789999999999886 46899999999999 889999999999999999999
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 362 (538)
+.+..+..|...+.+++|+|++ .++++++.||.|++||+.++.....+. .+. ......+++|++++|++|+.||
T Consensus 113 ~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~---~~~--~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 113 KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLD---TRG--KFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEE---CSS--SCEEEEEECTTSSEEEEEETTS
T ss_pred CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEec---CCC--ceEEEEEECCCCCEEEEEcCCC
Confidence 9999999999999999999954 578999999999999998765432222 221 2234568899999999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (538)
.|++||+++++.+..+.+|..+|.+++|+ +.+|++|+.|++|++||+++++....+..+. ..+.. ++|+|++.+|+
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~-~~~sp~~~~l~ 264 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-SWVLN-VAFCPDDTHFV 264 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS-SCEEE-EEECTTSSEEE
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC-CceEE-EEECCCCCEEE
Confidence 99999999999999999999999999999 5599999999999999999999988887664 44444 79999999999
Q ss_pred EEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 441 VSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 441 ~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
+++.|++|++||.. +++..+.+|...|.+++| ++++|++++.||.|++||.
T Consensus 265 s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999954 577888999999999988 8899999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=287.65 Aligned_cols=283 Identities=22% Similarity=0.358 Sum_probs=222.9
Q ss_pred EEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC-----CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC
Q 009274 244 KFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 315 (538)
....|.+|.++|++++|+ +++|+||+.|++|++||+.+ +.++..+++|...|.+++|+|+ +.++++|+.|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDK 87 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-CCEEEEEeCCC
Confidence 445799999999999998 47999999999999999863 3457789999999999999985 56889999999
Q ss_pred cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC---
Q 009274 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--- 392 (538)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--- 392 (538)
+|++||+.+++. +..+..+.. ....++++++++++++|+.|++|++||++ ++.+..+.+|...|.++.+.+
T Consensus 88 ~v~~wd~~~~~~---~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 88 TLRLWDVATGET---YQRFVGHKS--DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEEEETTTTEE---EEEEECCSS--CEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--
T ss_pred EEEEEECCCCCe---eEEEccCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCC
Confidence 999999987643 333333332 22345778889999999999999999986 567788899999999999973
Q ss_pred -----CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccc
Q 009274 393 -----GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKG 465 (538)
Q Consensus 393 -----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~ 465 (538)
..+++++.|+.|++||+++++....+..|. ..+.. ++++|++++|++|+.||.|++||... .+..+.. ..
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-~~v~~-~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~ 238 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINT-LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QD 238 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCC-SCEEE-EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CS
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCC-CcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CC
Confidence 279999999999999999998888887653 44444 79999999999999999999999654 4555554 46
Q ss_pred eEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCc---ccCCCceE-EEEEeCCE-EEEEECCCeEEEEEcC
Q 009274 466 SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGA---IPCGSVIT-ALLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 466 ~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
.|.+++| ++.+|++++.+ .+++|++.............. ..+...+. ..+.+++. |++|+.||.|++|++.
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 7888877 88888888754 599999988765544332211 11222344 44455654 8889999999999975
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=308.61 Aligned_cols=310 Identities=15% Similarity=0.208 Sum_probs=243.9
Q ss_pred CccceeeeeccCcc-eeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 219 GADIDQARAAGGVK-DLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 219 ~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
...+..+.+.+++. .++++..++.+++|+ +.+|.+.|++++|+ +++|++|+.|++|++||+.+++.+.
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 44678888888876 589999999999986 56899999999999 8999999999999999999999988
Q ss_pred EEe-------cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee
Q 009274 287 TFK-------GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359 (538)
Q Consensus 287 ~~~-------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 359 (538)
.+. +|.+.|.+++|+|+ +.++++++.|++|++||+.+++....+..... .......+.++++.+++++
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTR----IEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSS----GGGCEEEEEECSSCEEEEE
T ss_pred eeccccccccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCC----ccceeEEEEEcCCEEEEEe
Confidence 884 79999999999995 45789999999999999987654333322111 1112334556888999999
Q ss_pred CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCC---------------
Q 009274 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS--------------- 422 (538)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------------- 422 (538)
.|+.+++||..+++....+.+|...|++++|+ +++|++++.|++|++||+.+++....+...+
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 99999999999998888899999999999999 5599999999999999998765433210000
Q ss_pred ----------------------------------------C-------------------------CceEEEEEEcCCCC
Q 009274 423 ----------------------------------------S-------------------------GAVSSVLSLTAVQH 437 (538)
Q Consensus 423 ----------------------------------------~-------------------------~~~~~~~~~~~~~~ 437 (538)
. .....+++++|+++
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0 01123468999999
Q ss_pred EEEEEeCCCcEEEEeCCcc----eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCC-CeeEeeeecCCcccCCC
Q 009274 438 TLVVSHESGSIKVWRNDKF----MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG-DEFEEDVIPTGAIPCGS 510 (538)
Q Consensus 438 ~l~~~~~dg~i~iwd~~~~----~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~ 510 (538)
+|++|+.|++|++||.... ... .+|...|.+++| ++++|++++.|++|++||+.+ .+....... ..+..
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~---~~H~~ 537 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW---TFHTA 537 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC---CCCSS
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee---eeccc
Confidence 9999999999999996432 233 679999999987 999999999999999999987 443221011 11334
Q ss_pred ceEEEEE-eCC-EEEEEECCCeEEEEEcC
Q 009274 511 VITALLY-WQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 511 ~~~~~~~-~~~-~l~sg~~dg~v~vw~~~ 537 (538)
.+.++.+ +++ .|++|+.|++|++|++.
T Consensus 538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 538 KVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 4555555 555 48899999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=286.70 Aligned_cols=264 Identities=17% Similarity=0.286 Sum_probs=226.2
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC----ce
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----SH 284 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~ 284 (538)
..+..+.+++++..++++..++.+++|+ +..|...|.+++|+ ++++++|+.|+.|++||+.+. +.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 3578888999999999999999999997 46799999999999 899999999999999999865 45
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcE
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 364 (538)
...+.+|.+.|.++.|++++ .+++++.|++|++||+.++... ..+..+.. .....+++|+++++++|+.|+.|
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~---~~~~~h~~--~v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT---TTFTGHTG--DVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp EEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE---EEECCCSS--CEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE---EEEcCCCC--ceEEEEECCCCCEEEEEeCCCcE
Confidence 67788999999999998754 4789999999999999875432 33333332 22355788899999999999999
Q ss_pred EEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 009274 365 KAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 365 ~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
++||+++++++..+.+|...|++++|+ +++|++|+.|++|++||+++++.+..+...........++|+|+++++++|
T Consensus 209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 999999999999999999999999999 569999999999999999999887777543322234447999999999999
Q ss_pred eCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
+.||.|++||.. +....+.+|...|.++++ ++.+|++|+.||.|++||
T Consensus 289 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999954 567788999999999987 889999999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=287.10 Aligned_cols=291 Identities=18% Similarity=0.229 Sum_probs=223.3
Q ss_pred CeEEEEEeecCCC-cEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE--E-EecCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 241 GNVKFKDLQGHRD-CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH--T-FKGHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 241 ~~~~i~~l~~h~~-~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~--~-~~~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
....+..+.+|.+ .|++++|+ +++|++|+.|++|+|||+.+++... . ..+|...|.+++|+|+ +.+|++|+.|
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D 82 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLASASFD 82 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-SSEEEEEETT
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-CCEEEEEECC
Confidence 3456778999988 99999999 8999999999999999998876432 2 2579999999999995 5588999999
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc---eeEEecCCCCCeEEEEEe
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT---LSCTMSGHKSAVSTLAVC 391 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~ 391 (538)
+++++||+..... ..+..+..+.. ....++++|++++|++|+.|++|++||++++. ++..+.+|...|.+++|+
T Consensus 83 ~~v~iw~~~~~~~-~~~~~~~~h~~--~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 83 ATTCIWKKNQDDF-ECVTTLEGHEN--EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp SCEEEEEECCC-E-EEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred CcEEEEEccCCCe-EEEEEccCCCC--CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 9999999875431 12233333332 23356888999999999999999999998763 456778999999999999
Q ss_pred --CCEEEEEecCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc------------
Q 009274 392 --NGVLYSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------------ 455 (538)
Q Consensus 392 --~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------ 455 (538)
+.+|++++.|++|++||.++++. ...+..| ...+.. ++|+|++++|++|+.|++|++||...
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~-l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWS-LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEE-EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEE-EEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 55999999999999999988764 3455554 344444 79999999999999999999998421
Q ss_pred -----ceeeecc-ccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeE-----eeeecCCcccCCCceEEEEEe-C--
Q 009274 456 -----FMKSMQT-HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFE-----EDVIPTGAIPCGSVITALLYW-Q-- 519 (538)
Q Consensus 456 -----~~~~~~~-h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~-- 519 (538)
++..+.+ |...|.+++| ++..|++++.|+.|++|+....... ....+... .+...+.++.|. +
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ-AHSQDVNCVAWNPKEP 316 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT-SSSSCEEEEEECSSST
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc-cccCcEeEeEEeCCCc
Confidence 1233444 8889999988 7889999999999999998754310 01111111 134456666664 4
Q ss_pred CEEEEEECCCeEEEEEcCC
Q 009274 520 GKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 520 ~~l~sg~~dg~v~vw~~~~ 538 (538)
..|++|+.||.|++|++.+
T Consensus 317 ~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp TEEEEEETTSCEEEEEECC
T ss_pred eEEEEcCCCCcEEEEEecC
Confidence 3688999999999999853
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=295.00 Aligned_cols=297 Identities=22% Similarity=0.327 Sum_probs=248.4
Q ss_pred ccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEE
Q 009274 228 AGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 298 (538)
..++..++++..++.+++|+ +.+|.+.|++++|+++++++|+.||+|++||+.+++.+..+.+|...|.++
T Consensus 126 ~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 205 (445)
T 2ovr_B 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 205 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE
Confidence 34578899999999999887 468999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe
Q 009274 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378 (538)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 378 (538)
.|+ +..+++|+.||.|++||+.+++....+ ..+. ..+.++.++++++++|+.||.|++||+++++.+..+
T Consensus 206 ~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~----~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 206 HLH---EKRVVSGSRDATLRVWDIETGQCLHVL---MGHV----AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp EEE---TTEEEEEETTSEEEEEESSSCCEEEEE---ECCS----SCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred Eec---CCEEEEEeCCCEEEEEECCCCcEEEEE---cCCc----ccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 995 357899999999999999876543322 2222 235567778999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cc
Q 009274 379 SGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KF 456 (538)
Q Consensus 379 ~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~ 456 (538)
.+|...|.++.|++.++++++.|+.|++||+++++.+..+..+.. .+. ++.++++++++|+.||.|++||.. +.
T Consensus 276 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~---~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTS---GMELKDNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CEE---EEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc-cEE---EEEEeCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999999888999999999999999999999988876533 332 344567899999999999999954 45
Q ss_pred eeeecc---ccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCE-EEEEECCCe-
Q 009274 457 MKSMQT---HKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGK-LFVGCADRT- 530 (538)
Q Consensus 457 ~~~~~~---h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-l~sg~~dg~- 530 (538)
...+.. |...|.++.+++++|++|+.||.|++||+.+++............+...+..+.++ ++. +++|+.||+
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC
Confidence 666765 88999999999999999999999999999998876665332222345566666665 555 677999997
Q ss_pred ---EEEEEcCC
Q 009274 531 ---VKVYYYGK 538 (538)
Q Consensus 531 ---v~vw~~~~ 538 (538)
|.+||++.
T Consensus 432 ~~~l~v~df~~ 442 (445)
T 2ovr_B 432 ETKLLVLDFDV 442 (445)
T ss_dssp CCEEEEEECCC
T ss_pred ccEEEEEECCC
Confidence 99999863
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-35 Score=306.75 Aligned_cols=302 Identities=17% Similarity=0.190 Sum_probs=238.4
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC--ceEEEE
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SHVHTF 288 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~ 288 (538)
+..+.++++++.++++. ++.+.+|+ +.+|.+.|++++|+ |++|++|+.|++|+|||+.++ .....+
T Consensus 21 ~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 44566777788887776 45777776 56899999999999 999999999999999999754 345678
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCC----CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCc
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSG----GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRT 363 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~ 363 (538)
.+|.+.|.+++|+|++. .+++++.+ +.|++||.. .... .+..+.. ....++|+|++. .|++|+.|++
T Consensus 100 ~~~~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v~~wd~~--~~~~---~l~gh~~--~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTG--TSNG---NLTGQAR--AMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp ECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTC--CBCB---CCCCCSS--CEEEEEECSSSSCEEEEEETTSC
T ss_pred cccCCceEEEEECCCCC-EEEEEECCCCceeEEEEeeCC--CCcc---eecCCCC--CceEEEECCCCCeEEEEEeCCCe
Confidence 89999999999999766 44555543 467788743 2222 2223322 233567888876 6999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEec------CCCCceEEEEEEcCC
Q 009274 364 IKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE------DSSGAVSSVLSLTAV 435 (538)
Q Consensus 364 i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 435 (538)
|++||..+++....+.+|...|++++|+ +.+|++|+.|++|++||+.+++....+.. .|.+.+.. ++|+|+
T Consensus 172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~-v~~spd 250 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG-LTWSPD 250 (611)
T ss_dssp EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE-EEECTT
T ss_pred EEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEE-EEECCC
Confidence 9999999999999999999999999999 55999999999999999999998888742 34555555 699999
Q ss_pred CCEEEEEeCCCcEEEEeCCc--ce-------------------------------------------eeeccccceEEEE
Q 009274 436 QHTLVVSHESGSIKVWRNDK--FM-------------------------------------------KSMQTHKGSVFAV 470 (538)
Q Consensus 436 ~~~l~~~~~dg~i~iwd~~~--~~-------------------------------------------~~~~~h~~~v~~~ 470 (538)
+++|++++.|++|++||..+ .. ..+.+|...|.++
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l 330 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL 330 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence 99999999999999999643 11 2345788999999
Q ss_pred Ee--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCEEEEEECCCeEEEEEcC
Q 009274 471 FL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 471 ~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~v~vw~~~ 537 (538)
++ ++++|++++.|++|++||+.+++........ +...+..+.+ +++.+++++.|+.+++|+..
T Consensus 331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~----h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 331 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDV----HATMITGIKTTSKGDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCS----CSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeecccC----CcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence 87 8999999999999999999988764432111 3334555554 57789999999999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=286.52 Aligned_cols=277 Identities=20% Similarity=0.296 Sum_probs=219.8
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCc------------------CeEEEEEecCCCC
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH------------------KVMAVVYVDEDQP 306 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~~~~~~ 306 (538)
...+|.+.|+|++|+ |++|++|+ |+++++|++.+++.+..+..|.. .|.+++|+|+ +.
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~ 136 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GK 136 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SS
T ss_pred EecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-CC
Confidence 344799999999999 88999876 78999999999999888876542 4899999995 45
Q ss_pred EEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeE
Q 009274 307 LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386 (538)
Q Consensus 307 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 386 (538)
++++|+.|+.|++||+.+++. ...+..+.. .....++++++++|++|+.|++|++||+++++....+. +...+.
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~ 210 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKI---VMILQGHEQ--DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVT 210 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEE---EEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred EEEEEcCCCeEEEEECCCCcE---EEEEccCCC--CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcE
Confidence 789999999999999986533 233333332 22345788899999999999999999999999888776 567899
Q ss_pred EEEEe---CCEEEEEecCCcEEEEECCCCceeEEEec------CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--
Q 009274 387 TLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEE------DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-- 455 (538)
Q Consensus 387 ~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 455 (538)
+++|+ +.++++|+.|+.|++||+++++.+..+.. .+...+.. ++|+|++++|++|+.|+.|++||...
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS-VVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE-EEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE-EEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 99998 35999999999999999999988777631 23344444 79999999999999999999999643
Q ss_pred ------------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe---
Q 009274 456 ------------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--- 518 (538)
Q Consensus 456 ------------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 518 (538)
+...+.+|...|.++++ ++.+|++|+.||.|++||+.+++....... +...+..+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----HRNSVISVAVANGS 364 (393)
T ss_dssp -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSC
T ss_pred CcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----CCCCEEEEEecCCc
Confidence 34567789999999987 889999999999999999998876554432 23345555543
Q ss_pred ----C-CEEEEEECCCeEEEEEcC
Q 009274 519 ----Q-GKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 519 ----~-~~l~sg~~dg~v~vw~~~ 537 (538)
+ ..|++|+.||+|++|++.
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CcCCCCCEEEEECCCCcEEECccc
Confidence 2 358899999999999974
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=271.98 Aligned_cols=280 Identities=21% Similarity=0.316 Sum_probs=234.6
Q ss_pred CeEEEEEeecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 241 GNVKFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 241 ~~~~i~~l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
+...+..+.+|.+.|++++|. +++|++|+.||.|++||+.+++....+..|...|.+++|+|+ +.++++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeEEE
Confidence 445678899999999999998 999999999999999999999999999999999999999995 568899999999999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEE
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLY 396 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~ 396 (538)
|++..............+.. .+.++.++++++++++.||.|++|| .++.+..+..|...+.++.|. +++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQG----NVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EETTCCTTSCC-CEECCCSS----CEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEeeecCCCCcccchhhccc----CEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 99987665555555544433 3566777899999999999999999 778888899999999999997 56999
Q ss_pred EEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--
Q 009274 397 SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-- 472 (538)
Q Consensus 397 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~-- 472 (538)
+++.|+.|++|| ..+....+...+...+.. ++++|++. +++++.||.|++||.+ +.+..+..|...|.++.+
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 235 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRH-LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP 235 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEE-EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEE-EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec
Confidence 999999999999 456666676645555554 68999988 9999999999999954 577888899999999988
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEE-EEeCCEEEEEECCCeEEEEEcC
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++ .|++++.||.|++||+.+++........ ...+..+ +.+++.+++++.||.|++|++.
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLP-----AISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTCCEEEEEECS-----SSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred CC-CEEEEecCCEEEEEECCCCceeEEEecc-----CceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 55 6999999999999999998876655432 2234444 4457789999999999999986
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=283.49 Aligned_cols=267 Identities=18% Similarity=0.170 Sum_probs=209.4
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEE-----e---------------ecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeC
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKD-----L---------------QGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSL 279 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-----l---------------~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~ 279 (538)
.+..+.+++++..++++. +..+++|+ + ..|...|++++|+ ++.+++|+.||+|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEec
Confidence 367788888888887766 44444443 1 1245789999999 889999999999999999
Q ss_pred CCCceEEE----EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-E
Q 009274 280 KDFSHVHT----FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-Y 354 (538)
Q Consensus 280 ~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 354 (538)
++++.+.. +.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.+++. +..+..+.. .....++++++. +
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd~~~~~~---~~~~~~h~~--~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWDLAQQVV---LSSYRAHAA--QVTCVAASPHKDSV 184 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE---EEEECCCSS--CEEEEEECSSCTTE
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcE---EEEEcCcCC--ceEEEEecCCCCCc
Confidence 98876544 4489999999999995 55889999999999999987643 333433332 223457777775 8
Q ss_pred EEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEE
Q 009274 355 LYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429 (538)
Q Consensus 355 l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 429 (538)
+++|+.|++|++||+++++....+. .|...+.+++|+ +.++++|+.|++|++||+++++++..+..|. ..+..
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~-~~v~~- 262 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS-QCVTG- 262 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS-SCEEE-
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC-CCEEE-
Confidence 8999999999999999999888774 456679999998 3488999999999999999999999998764 44444
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEeCCc-ceeeeccccceEEEEEe--CC-CEEEEEeCCCeEEEEecCCCee
Q 009274 430 LSLTAVQ-HTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EG-KWLFTGGWDKTVSVQELAGDEF 496 (538)
Q Consensus 430 ~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~--~~-~~l~sgs~dg~v~iwd~~~~~~ 496 (538)
++|+|++ ++|++|+.|++|++||... .+..+.+|.+.|.+++| ++ .+|+++|.||+|++|++.+...
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 6999997 5799999999999999653 45567899999999987 55 4788999999999999987653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=276.81 Aligned_cols=287 Identities=20% Similarity=0.338 Sum_probs=222.2
Q ss_pred EEEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCcCeEEEEEecCCCCEEEEEcCC
Q 009274 243 VKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFS-----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
....+|+||.++|++++|+ +++|+|||.|++|+|||+.+.+ +...+++|...|.+++|+|+ +.++++++.|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d 107 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWD 107 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-CCEEEEEccc
Confidence 3445799999999999998 5799999999999999987643 56788999999999999985 5588999999
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEe--
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL-SCTMSGHKSAVSTLAVC-- 391 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~-- 391 (538)
+.|++|+............ .. .......++++++++++|+.|+.+++||...... .....+|...+.+++|+
T Consensus 108 ~~i~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVG---HT--KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp SEEEEEETTTTEEEEEEEC---CS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred ccceEEeecccceeeeecC---CC--CceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 9999999875432222211 11 2233457788889999999999999999876654 34457899999999998
Q ss_pred --CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceE
Q 009274 392 --NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSV 467 (538)
Q Consensus 392 --~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v 467 (538)
..++++++.|+.|++||+++++.+..+..+. ..+.+ ++|+|++++|++|+.||.|++||... .+..+.. ...+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~-~~v~~-~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v 259 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNT-VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDII 259 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEE-EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCC-CcEEE-EEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceE
Confidence 2378999999999999999999988887663 44444 69999999999999999999999664 4444544 4578
Q ss_pred EEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCC----cccCCCceEEEEE-eCC-EEEEEECCCeEEEEEcCC
Q 009274 468 FAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG----AIPCGSVITALLY-WQG-KLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 468 ~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~~~~ 538 (538)
.++.+ .+..+++++.|+.|++||+++........... ...+...+.++.+ +++ .|++|+.||.|+|||+.+
T Consensus 260 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 260 NALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 88877 45567777889999999999887654443211 1123345565555 454 588999999999999853
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=285.86 Aligned_cols=280 Identities=20% Similarity=0.324 Sum_probs=229.0
Q ss_pred EEEEeecCCCc-EEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 244 KFKDLQGHRDC-VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 244 ~i~~l~~h~~~-V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
....+.+|.+. ++++.++++++++|+.||+|++||+.+++.+..+.+|.+.|.+++|++++ ++++|+.||+|++||+
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEET
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEEC
Confidence 34578999888 57888889999999999999999999999999999999999999998755 8899999999999999
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEe--ecCCEEEEeeCCCcEEEEECCCCce-----------------------eEE
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALT--TSGRYLYTGSGDRTIKAWSLLDGTL-----------------------SCT 377 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~i~iwd~~~~~~-----------------------~~~ 377 (538)
.++.. ...+..+.. .....+++ ++++++++|+.||.|++||+++++. +..
T Consensus 191 ~~~~~---~~~~~~h~~--~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 191 KKGCC---THVFEGHNS--TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp TTTEE---EEEECCCSS--CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred CCCcE---EEEECCCCC--ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 87643 333333332 12234555 4667999999999999999987652 456
Q ss_pred ecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Cc
Q 009274 378 MSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DK 455 (538)
Q Consensus 378 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~ 455 (538)
+.+|...|.++..+++++++++.|+.|++||+++++.+..+..+. ..+.. ++++|+++++++|+.||.|++||. ++
T Consensus 266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~-~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYS-TIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEE-EEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 788999999998889999999999999999999999998887653 34444 799999999999999999999995 45
Q ss_pred ceeeeccccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEE
Q 009274 456 FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVY 534 (538)
Q Consensus 456 ~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw 534 (538)
.+..+.+|...|.++.+++++|++++.||.|++||+.+........+.. ......+.+++. +++|+ ||.|++|
T Consensus 344 ~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~-dg~i~iw 417 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN-----LSAITTFYVSDNILVSGS-ENQFNIY 417 (464)
T ss_dssp EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTT-----CCCEEEEEECSSEEEEEE-TTEEEEE
T ss_pred EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCC-----CccEEEEEeCCCEEEEec-CCeEEEE
Confidence 7788899999999999999999999999999999999877554443221 122334455555 55555 9999999
Q ss_pred EcCC
Q 009274 535 YYGK 538 (538)
Q Consensus 535 ~~~~ 538 (538)
|+.+
T Consensus 418 d~~~ 421 (464)
T 3v7d_B 418 NLRS 421 (464)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9853
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=277.91 Aligned_cols=282 Identities=19% Similarity=0.311 Sum_probs=212.8
Q ss_pred EEEEeecCCCcEEEEEE-----c---CCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCcCeEEEEEecCCCCEE
Q 009274 244 KFKDLQGHRDCVTGLAV-----G---GGFLFSSSFDKSIHVWSLKDF-------SHVHTFKGHDHKVMAVVYVDEDQPLC 308 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~-----~---~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l 308 (538)
....+++|.+.|++++| + +++|+||+.|++|++||+.+. .....+.+|...|.+++|+|+ +.++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEE
Confidence 45679999999999999 3 789999999999999998743 456788999999999999984 5688
Q ss_pred EEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCe
Q 009274 309 ISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAV 385 (538)
Q Consensus 309 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v 385 (538)
++|+.|++|++||++++... ..+..+.. ....++++|++++|++|+.|++|++||+... ..... .+|...|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~---~~~~~h~~--~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTY---KRFVGHQS--EVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWV 165 (343)
T ss_dssp EEEETTSEEEEEETTSSCEE---EEEECCCS--CEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCE
T ss_pred EEEcCCCcEEEEECCCCcEE---EEEcCCCC--cEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCcee
Confidence 99999999999999876433 33333332 2335688999999999999999999999743 33333 3788999
Q ss_pred EEEEEeC------------CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 009274 386 STLAVCN------------GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (538)
Q Consensus 386 ~~l~~~~------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 453 (538)
.+++|++ .++++++.|+.|++||. +.+....+..+. ..+.. ++|+|++++|++|+.||.|++||.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~-~~v~~-~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE-SNVNH-LSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS-SCEEE-EEECTTSSEEEEEETTCEEEEEES
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc-ccceE-EEECCCCCEEEEEcCCCeEEEEEC
Confidence 9999982 58999999999999994 556666666553 44444 799999999999999999999997
Q ss_pred Cc---ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecC-C-------cccCCCceEEEEE-eC
Q 009274 454 DK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPT-G-------AIPCGSVITALLY-WQ 519 (538)
Q Consensus 454 ~~---~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~-~~ 519 (538)
.. ....+ .+...|.+++| ++.+++ ++.|+.|++||+.+.+........ . ...+...+.++.+ ++
T Consensus 243 ~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 243 LNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp SCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred CCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 32 22222 34556888887 666665 456888999999876543211111 0 0013334555555 45
Q ss_pred C-EEEEEECCCeEEEEEcC
Q 009274 520 G-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 520 ~-~l~sg~~dg~v~vw~~~ 537 (538)
+ .|++|+.||.|++|++.
T Consensus 321 g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SCCEEEEETTSEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEE
Confidence 4 48899999999999974
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=287.83 Aligned_cols=276 Identities=22% Similarity=0.331 Sum_probs=236.5
Q ss_pred EEeecCCCc-EEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 246 KDLQGHRDC-VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 246 ~~l~~h~~~-V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
..+.+|.+. ++|+.++++++++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.++++|+.||+|++||+.+
T Consensus 112 ~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp EEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT
T ss_pred EEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCc
Confidence 458899886 57888889999999999999999999999999999999999999996 45899999999999999987
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcE
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTI 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i 404 (538)
++.. .....+. ..+.++.++++.+++|+.||.|++||+++++.+..+.+|...|.+++++++++++|+.|+.|
T Consensus 189 ~~~~---~~~~~h~----~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 189 GECI---HTLYGHT----STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 261 (445)
T ss_dssp TEEE---EEECCCS----SCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred CcEE---EEECCCC----CcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEE
Confidence 6432 3333322 24667777899999999999999999999999999999999999999988899999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEeCCCEEEEEeC
Q 009274 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFLEGKWLFTGGW 482 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~~~~~l~sgs~ 482 (538)
++||+++++.+..+..+. ..+.. +.+ ++.++++++.||.|++||. .+....+.+|...+.++.++++++++|+.
T Consensus 262 ~iwd~~~~~~~~~~~~~~-~~v~~-~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 337 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHT-NRVYS-LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 337 (445)
T ss_dssp EEEEGGGTEEEEEECCCS-SCEEE-EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEET
T ss_pred EEEECCCCcEeEEecCCC-CceEE-EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeC
Confidence 999999999998887653 33333 455 8899999999999999995 45778889999999999999999999999
Q ss_pred CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 483 DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 483 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
||.|++||+.+++......... .+...+.++.+.+..+++|+.||.|++||+.
T Consensus 338 dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQGPN--KHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TSCEEEEETTTCCEEEEECSTT--SCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEccCC--CCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 9999999999887665544322 2455677888888889999999999999985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=296.24 Aligned_cols=299 Identities=23% Similarity=0.390 Sum_probs=245.1
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEE--------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD--------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
...+..+.+.+++..++++..++.+++|+ +.+|.+.|++++|+ ++++++++.|++|++||... +.+..+
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~ 340 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTL 340 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEE
Confidence 34577788889999999999999999886 56899999999998 89999999999999999764 567788
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
.+|...|.+++|+|++ .++++++.||.|++||... ..+.....+.. .....++++++++|++++.|+.|++||
T Consensus 341 ~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~----~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 341 TGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG----QLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTC----CEEEEEECCSS--CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCC----CEEEEecCCCC--CeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999999999854 5789999999999999642 22333333332 223458899999999999999999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 369 LLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
. +++.+..+.+|...|++++|+ +.+|++++.|++|++||. +++.+..+..+. ..+.. ++|+|++++|++++.|+
T Consensus 414 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~-~~v~~-~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 414 R-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVRG-VAFSPDGQTIASASDDK 489 (577)
T ss_dssp T-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS-SCEEE-EEECTTSCEEEEEETTS
T ss_pred C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC-CCEEE-EEEcCCCCEEEEEeCCC
Confidence 5 678888999999999999999 559999999999999996 567777777653 44444 79999999999999999
Q ss_pred cEEEEeC-CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE-EeCCE-
Q 009274 447 SIKVWRN-DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL-YWQGK- 521 (538)
Q Consensus 447 ~i~iwd~-~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 521 (538)
.|++||. ++....+.+|...|.+++| ++++|++++.||.|++||..+........ +...+..+. .+|+.
T Consensus 490 ~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~------h~~~v~~~~fs~dg~~ 563 (577)
T 2ymu_A 490 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVWGVAFSPDGQT 563 (577)
T ss_dssp EEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC------CSSCEEEEEECTTSSC
T ss_pred EEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC------CCCCEEEEEEcCCCCE
Confidence 9999994 4678889999999999987 89999999999999999976544332222 233455544 45654
Q ss_pred EEEEECCCeEEEEE
Q 009274 522 LFVGCADRTVKVYY 535 (538)
Q Consensus 522 l~sg~~dg~v~vw~ 535 (538)
|++++.||+|++||
T Consensus 564 l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 564 IASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEeCCCEEEEeC
Confidence 88999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=278.83 Aligned_cols=273 Identities=21% Similarity=0.226 Sum_probs=221.6
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe------------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC--c
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--S 283 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l------------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~--~ 283 (538)
..+..+.+++++..++++..++.+++|++ .+|.+.|++++|+ +++|++|+.|++|++||+.++ +
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE 96 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE
Confidence 35778889999999999999999999974 4799999999999 899999999999999998876 4
Q ss_pred eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 284 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
.+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.+......+.....+.. .....+++|++++|++|+.|++
T Consensus 97 ~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~ 173 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQELLASASYDDT 173 (345)
T ss_dssp EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS--CEEEEEECSSSSCEEEEETTSC
T ss_pred EEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC--CeEEEEECCCCCEEEEEeCCCc
Confidence 57889999999999999995 56889999999999999987654444444444332 2234678899999999999999
Q ss_pred EEEEECCCCc--eeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCC---------------ceeEEEecCCCC
Q 009274 364 IKAWSLLDGT--LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH---------------SLLTVLEEDSSG 424 (538)
Q Consensus 364 i~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~---------------~~~~~~~~~~~~ 424 (538)
|++||.++++ +...+.+|...|++++|+ +++|++|+.|++|++||.... +++..+...+..
T Consensus 174 i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 253 (345)
T 3fm0_A 174 VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR 253 (345)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS
T ss_pred EEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC
Confidence 9999998875 456789999999999999 559999999999999997432 223344443444
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc------c-----eeeeccccceEEEEEe--CC-CEEEEEeCCCeEEEEe
Q 009274 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------F-----MKSMQTHKGSVFAVFL--EG-KWLFTGGWDKTVSVQE 490 (538)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~-----~~~~~~h~~~v~~~~~--~~-~~l~sgs~dg~v~iwd 490 (538)
.+.. ++|++++..+++++.|+.|++|+... + .....+|...|.+++| ++ .+|++|+.||+|++|+
T Consensus 254 ~v~~-v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 254 TIYD-IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp CEEE-EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred cEEE-EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 5554 69999999999999999999998432 1 1223579999999998 44 5999999999999999
Q ss_pred cCCCee
Q 009274 491 LAGDEF 496 (538)
Q Consensus 491 ~~~~~~ 496 (538)
+.+.+.
T Consensus 333 ~~~~~~ 338 (345)
T 3fm0_A 333 YQRPEG 338 (345)
T ss_dssp ECC---
T ss_pred ecCCCC
Confidence 988764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=292.41 Aligned_cols=275 Identities=17% Similarity=0.307 Sum_probs=224.9
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc-----
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS----- 283 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~----- 283 (538)
..|..+.+++++..+++++.++.+++|+ +.+|...|.+++|+ +++|++|+.|+.|++||+.+..
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence 4588899999999999999999999997 56899999999999 9999999999999999986532
Q ss_pred --eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec-ccCCceeeeEEEEee-cCCEEEEee
Q 009274 284 --HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN-EEKDWRYSGIHALTT-SGRYLYTGS 359 (538)
Q Consensus 284 --~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~sg~ 359 (538)
....+.+|.+.|.++.|+|+++..+++|+.|++|++||+.++.....+.... ..+.... ...++.+ +++++++|+
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LSLSINSLNANMFISGS 225 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE-EEEEECSSSCCEEEEEE
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe-EEEEeecCCCCEEEEEE
Confidence 3456789999999999999888889999999999999998765433221111 1111111 1233433 778999999
Q ss_pred CCCcEEEEECC-CCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCC-----ceEEEEE
Q 009274 360 GDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG-----AVSSVLS 431 (538)
Q Consensus 360 ~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~ 431 (538)
.|++|++||++ .++.+..+.+|.+.|++++|+ +.+|++|+.|++|++||+++++.+..+..+... .....++
T Consensus 226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305 (380)
T ss_dssp TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence 99999999998 557888999999999999999 459999999999999999999988877653221 1123479
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC--cceeee----ccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 432 LTAVQHTLVVSHESGSIKVWRND--KFMKSM----QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 432 ~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~----~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
|+|+++++++|+.||.|++||.. +....+ .+|.+.|.++++ ++++|++|+.||+|++|++.+.+
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999954 344444 679999999887 89999999999999999998653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.46 Aligned_cols=265 Identities=17% Similarity=0.244 Sum_probs=224.2
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC------
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF------ 282 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~------ 282 (538)
..|.++.+.+++..+++++.++.+++|+ +..|...|.+++|+ +.++++|+.|+.+++|++...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 3588899999999999999999999997 45688899999999 999999999999999998643
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee--cCCEEEEeeC
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSG 360 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~ 360 (538)
.....+.+|...|.+++|+|++ ..+++++.|++|++||+++++.. ..+..+.. .....++++ ++++|++|+.
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~---~~~~~h~~--~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL---QSFHGHGA--DVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE---EEEECCSS--CEEEEEECCCSSCCEEEEEET
T ss_pred ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE---EEEcCCCC--CeEEEEEEeCCCCCEEEEEeC
Confidence 3456778899999999999854 57799999999999999876533 33333332 122345655 4679999999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 009274 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
||.|++||+++++++..+.+|...|++++|+ +++|++|+.|++|++||+++++.+..+..+........+.|+|++++
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence 9999999999999999999999999999998 56999999999999999999887776654433333445799999999
Q ss_pred EEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 439 LVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 439 l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
+++|+.|+.|++||.. +.+..+.+|...|.+++| ++++|++|+.||+|++|+
T Consensus 299 l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999954 567788899999999987 899999999999999996
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=289.67 Aligned_cols=272 Identities=18% Similarity=0.325 Sum_probs=226.9
Q ss_pred EeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 009274 247 DLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
...+|...|+|++++++++++|+.||+|++||+.+++....+.+|...|.+++| ++.++++|+.||+|++||+.++.
T Consensus 128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCC
T ss_pred cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCc
Confidence 345678899999999999999999999999999999999999999999999998 56689999999999999998765
Q ss_pred CCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCcee---EEecCCCCCeEEEEEeCCEEEEEecCCc
Q 009274 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS---CTMSGHKSAVSTLAVCNGVLYSGSRDGT 403 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~l~s~s~dg~ 403 (538)
... ....+ ...+.++..+++.+++|+.||.|++||+++++.. ..+.+|...|.++++.++++++|+.||.
T Consensus 205 ~~~---~~~~h----~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 277 (435)
T 1p22_A 205 MLN---TLIHH----CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 277 (435)
T ss_dssp EEE---EECCC----CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred EEE---EEcCC----CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCe
Confidence 433 22222 2346677778899999999999999999988765 6778999999999999999999999999
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEeCCCEEEEEe
Q 009274 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFLEGKWLFTGG 481 (538)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~~~~~l~sgs 481 (538)
|++||+++++.+..+..+.. .+.. +.+ +++++++|+.||.|++||.+ +.+..+.+|...|.++.+++++|++|+
T Consensus 278 i~vwd~~~~~~~~~~~~~~~-~v~~-~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKR-GIAC-LQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 353 (435)
T ss_dssp EEEEETTTCCEEEEEECCSS-CEEE-EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred EEEEECCcCcEEEEEcCCCC-cEEE-EEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEe
Confidence 99999999999999886643 3332 344 57899999999999999954 577889999999999999999999999
Q ss_pred CCCeEEEEecCCCe---------eEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 482 WDKTVSVQELAGDE---------FEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 482 ~dg~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.||.|++||+.+.. ....... +...+..+.+.+..|++|+.||.|++||+.
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVE-----HSGRVFRLQFDEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECC-----CSSCCCCEEECSSCEEECCSSSEEEEEC--
T ss_pred CCCcEEEEECCCCCCccccccchheeeccC-----CCCCeEEEEeCCCEEEEEeCCCEEEEEECC
Confidence 99999999986543 2222211 333455666667779999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=280.04 Aligned_cols=292 Identities=21% Similarity=0.361 Sum_probs=236.8
Q ss_pred CcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEE
Q 009274 230 GVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299 (538)
Q Consensus 230 ~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 299 (538)
++..++++..++.+++|+ +.+|.+.|++++|+ ++++++|+.||+|++||+++++.+..+.+|...|.+++
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 456888999999999887 56899999999999 66999999999999999999999999999999999999
Q ss_pred Eec-CCCCEEEEEcCCCcEEEEEccCCCCCcc--------------------eeeecccCCceeeeEEEEeecCCEEEEe
Q 009274 300 YVD-EDQPLCISGDSGGGIFVWSFSFPLGHEP--------------------LKKWNEEKDWRYSGIHALTTSGRYLYTG 358 (538)
Q Consensus 300 ~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~sg 358 (538)
|++ .++.++++|+.||+|++||+.+...... ...... +...+.+++++++++++|
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~ 286 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG----HMASVRTVSGHGNIVVSG 286 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC----CSSCEEEEEEETTEEEEE
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC----ccceEEEEcCCCCEEEEE
Confidence 996 3557899999999999999987653322 111112 233466789999999999
Q ss_pred eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 009274 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (538)
Q Consensus 359 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (538)
+.||.|++||+++++++..+.+|...|.+++|+ ++++++|+.|+.|++||+++++.+..+..+. ..+.. +.++ +
T Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~-~~~~--~ 362 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-ALVGL-LRLS--D 362 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEE-EEEC--S
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CcEEE-EEEc--C
Confidence 999999999999999999999999999999999 5599999999999999999999999988764 33333 4665 6
Q ss_pred CEEEEEeCCCcEEEEeCCcceeeecc---ccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceE
Q 009274 437 HTLVVSHESGSIKVWRNDKFMKSMQT---HKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVIT 513 (538)
Q Consensus 437 ~~l~~~~~dg~i~iwd~~~~~~~~~~---h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 513 (538)
+++++++.||.|++||..+....+.. +...+.++.++++++++|+ ||.|++||+.+++........ +...+.
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~----~~~~v~ 437 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK----DADQIW 437 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT----TCSEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc----CCCcEE
Confidence 89999999999999997765444433 2334556677999999999 899999999998876542222 345677
Q ss_pred EEEEeCCEEEE-EECCCeEEEE
Q 009274 514 ALLYWQGKLFV-GCADRTVKVY 534 (538)
Q Consensus 514 ~~~~~~~~l~s-g~~dg~v~vw 534 (538)
.+.++++.+++ ++.||.+.+|
T Consensus 438 ~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 438 SVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEETTEEEEEEEETTEEEEE
T ss_pred EEEecCCEEEEEEEeCCeEEEE
Confidence 77777777665 5667765544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=282.13 Aligned_cols=292 Identities=16% Similarity=0.214 Sum_probs=232.5
Q ss_pred EEEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCc------eEEEEecCCcCeEEEEEecC---CC---CEEEEEc
Q 009274 245 FKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS------HVHTFKGHDHKVMAVVYVDE---DQ---PLCISGD 312 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~---~~---~~l~s~~ 312 (538)
...+.+|.++|++++|+.++|++|+.||+|++||+.+++ .+..+.+|...|.+++|+|+ ++ .++++++
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 455889999999999999999999999999999999888 78899999999999999986 25 6889999
Q ss_pred CCCcEEEEEccCCCCCcc--eeeecccCC---ceeeeEEEEe----ecCCE-EEEeeCCCcEEEEECCC------CceeE
Q 009274 313 SGGGIFVWSFSFPLGHEP--LKKWNEEKD---WRYSGIHALT----TSGRY-LYTGSGDRTIKAWSLLD------GTLSC 376 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~----~~~~~-l~sg~~dg~i~iwd~~~------~~~~~ 376 (538)
.||.|++||+.+...... ......+.. .......+++ +++++ |++++.||.|++||+++ ++.+.
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence 999999999987664211 222322210 1233456788 88999 99999999999999998 66665
Q ss_pred -----Ee-------cCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEec---CC--CCceEEEEEEcCCCCE
Q 009274 377 -----TM-------SGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEE---DS--SGAVSSVLSLTAVQHT 438 (538)
Q Consensus 377 -----~~-------~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ 438 (538)
.+ ..|...|.+++|+ ++++++++.|+.|++||+++++.+..+.. +. ...+. .++|+|++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~-~i~~~~~~~~ 247 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSL 247 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTE
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc-eEEECCCCCE
Confidence 66 4489999999999 23999999999999999999998888876 30 23333 4799999999
Q ss_pred EEEEeCC---CcEEEEeCC--cceeeecc-------------ccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEe
Q 009274 439 LVVSHES---GSIKVWRND--KFMKSMQT-------------HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEE 498 (538)
Q Consensus 439 l~~~~~d---g~i~iwd~~--~~~~~~~~-------------h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~ 498 (538)
|++++.| |.|++||.. +.+..+.. |...|.++.| ++++|++++.||.|++||+.+++...
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 9999999 999999954 56777887 9999999987 79999999999999999999988766
Q ss_pred eeecCC-cccC---------------CCceEEEEE-eCC-----------EEEEEECCCeEEEEEcC
Q 009274 499 DVIPTG-AIPC---------------GSVITALLY-WQG-----------KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 499 ~~~~~~-~~~~---------------~~~~~~~~~-~~~-----------~l~sg~~dg~v~vw~~~ 537 (538)
...... ...+ ...+..+.+ +++ .|++|+.||.|++|++.
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 655110 0011 345555555 564 68899999999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=270.82 Aligned_cols=301 Identities=16% Similarity=0.260 Sum_probs=235.7
Q ss_pred ceeeeeccCcceeEEeecCC---------eEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc---eEEE
Q 009274 222 IDQARAAGGVKDLVNGLSKG---------NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---HVHT 287 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~---------~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~---~~~~ 287 (538)
+..+.+++++..++.+..++ ........+|.+.|++++|+ ++++++++ ||.|++||+.+++ ....
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 34455555555555444322 23334456899999999999 88999998 9999999998765 3344
Q ss_pred Ee--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEE
Q 009274 288 FK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (538)
Q Consensus 288 ~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 365 (538)
+. .|...|.+++|+|+ +.++++++.||.|++||+.++... .......+. ......+++++++++++++.||.|+
T Consensus 91 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSA--PACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp EECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--E-EEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcc-eeeecccCC--CceEEEEECCCCCEEEEEeCCCcEE
Confidence 44 79999999999995 557899999999999999876421 122222222 2233557888999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEe
Q 009274 366 AWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 366 iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (538)
+||+++++.+..+..|...|.+++|+ ++++++++.|+.|++||+++++.+..+... ..+. .++++|+++++++++
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~v~-~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIF-SLGYCPTGEWLAVGM 243 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEE-EEEECTTSSEEEEEE
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC--CceE-EEEECCCCCEEEEEc
Confidence 99999999999999999999999998 559999999999999999999888777542 3344 479999999999999
Q ss_pred CCCcEEEEeCCc-ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eC
Q 009274 444 ESGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQ 519 (538)
Q Consensus 444 ~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 519 (538)
.|+.|++||... ....+..|...+.++.+ ++++|++++.||.|++||+.+++......+ ...+..+.+ ++
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~------~~~v~~~~~s~~ 317 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE------SSSVLSCDISVD 317 (337)
T ss_dssp TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC------SSCEEEEEECTT
T ss_pred CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC------CCcEEEEEECCC
Confidence 999999999654 45567789999999987 799999999999999999998876644332 234555544 44
Q ss_pred C-EEEEEECCCeEEEEEc
Q 009274 520 G-KLFVGCADRTVKVYYY 536 (538)
Q Consensus 520 ~-~l~sg~~dg~v~vw~~ 536 (538)
+ .|++++.||.|++|++
T Consensus 318 ~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCeEEEEEE
Confidence 4 5888999999999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=271.10 Aligned_cols=264 Identities=22% Similarity=0.384 Sum_probs=216.3
Q ss_pred ccceeeeeccCc-ceeEEeecCCeEEEEE--------------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC
Q 009274 220 ADIDQARAAGGV-KDLVNGLSKGNVKFKD--------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF 282 (538)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~--------------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~ 282 (538)
..+..+.+.+++ ..++++..++.+++|+ +.+|...|++++|+ +++|++|+.|++|++||+.++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 346777777654 7889999999999985 46899999999998 899999999999999999999
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee------cCCEEE
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT------SGRYLY 356 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ 356 (538)
+.+..+.+|...|.+++|+|+ +.++++|+.|++|++||++.. .+.....+... .....+.| ++..++
T Consensus 98 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~~~----~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 98 ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDW--VSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETTSC----EEEEECCCSSC--EEEEEECCC------CCEEE
T ss_pred CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC----eEEEEeccCCc--EEEEEEccCCCCCCCccEEE
Confidence 999999999999999999984 568899999999999998632 23333333321 22334555 345899
Q ss_pred EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC
Q 009274 357 TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA 434 (538)
Q Consensus 357 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (538)
+++.|+.|++||+++++....+.+|...|.+++|+ +.+|++|+.|++|++||+++++.+..+..+ ..+. .++|+|
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~-~~~~sp 247 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVF-SLAFSP 247 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEE-EEEECS
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEE-EEEEcC
Confidence 99999999999999999999999999999999999 559999999999999999999998888754 2344 479999
Q ss_pred CCCEEEEEeCCCcEEEEeCCc--ceeee--------ccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC
Q 009274 435 VQHTLVVSHESGSIKVWRNDK--FMKSM--------QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 435 ~~~~l~~~~~dg~i~iwd~~~--~~~~~--------~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
++.++++++.+ .+++|+... ....+ ..|...+.+++| +|++|++|+.||.|++||+.+.
T Consensus 248 ~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 248 NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999988765 599998543 22222 235667888876 9999999999999999998653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=267.48 Aligned_cols=267 Identities=19% Similarity=0.295 Sum_probs=220.3
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
..+..+.+++++..++++..++.+++|++ .+|..+|.+++|+ +++|++|+.|++|++||+.+++.+..+
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 34788999999999999999999999984 5799999999998 899999999999999999999999999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAW 367 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iw 367 (538)
++|.+.|.+++|+|+ +.++++|+.|++|++||++++.. ....+..+.. .....+++| ++..|++|+.|++|++|
T Consensus 94 ~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~--~~~~~~~h~~--~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp ECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTE--EEEEECCCCS--CEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred eCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcc--hhhhhcccCC--cEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 999999999999995 45889999999999999986532 1222333322 233557777 56799999999999999
Q ss_pred ECCCCceeEEec-CCCCCeEEEEEe----CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 009274 368 SLLDGTLSCTMS-GHKSAVSTLAVC----NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 368 d~~~~~~~~~~~-~h~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
|++++.....+. +|...+..+.|. +.+|++|+.|++|++||+++++++..+..|.. .+.. ++|+|++.+|++|
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~-~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSF-AVFHPTLPIIISG 246 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEE-EEECSSSSEEEEE
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEE-EEECCCCCEEEEE
Confidence 998887766664 566889999997 34999999999999999999999999987743 3443 6899999999999
Q ss_pred eCCCcEEEEeCC--cceeeeccccceEEEEEe--CCC--EEEEEeCCCeEEEEecCCC
Q 009274 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~--~l~sgs~dg~v~iwd~~~~ 494 (538)
+.||+|++||.. +..+.+..|...+.++++ ++. ++++|+.| .+.+|++.+.
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred cCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 999999999954 577888899999999985 443 57777654 5778877653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=276.39 Aligned_cols=281 Identities=13% Similarity=0.157 Sum_probs=218.7
Q ss_pred EEEEeecCCCcEEEEEEc--C-CEEEEEeCCCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--G-GFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
....+.+|.+.|++++|+ + ++|++|+.||.|++||+.+++....+. +|...|.+++|+|+++.++++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 456789999999999999 5 799999999999999999988887776 69999999999997778999999999999
Q ss_pred EEEccCCCCCcceeeecccC-CceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-E
Q 009274 319 VWSFSFPLGHEPLKKWNEEK-DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-V 394 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~ 394 (538)
+||+... .......+. ........+++++++++++|+.|+.|++||+ +++.+..+.+|...|.+++|+ +. +
T Consensus 145 iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 145 LRDFSGS----VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEETTSC----EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEECCCC----ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 9999842 222222221 1122345688999999999999999999999 678888999999999999999 34 8
Q ss_pred EEEEecCCcEEEEECCC----CceeEEEecCCCCceEEEEEEcC-CCCEEEEEeCCCcEEEEeCCc--ceeeecccc---
Q 009274 395 LYSGSRDGTIRLWSLSD----HSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRNDK--FMKSMQTHK--- 464 (538)
Q Consensus 395 l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~--- 464 (538)
+++++.|+.|++||+++ +..+..+. +...+.. ++|+| ++++|++++.|+.|++||..+ ....+..|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~-~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNA-AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEE-EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEE-EEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 99999999999999998 55666663 3444444 79999 999999999999999999653 344444432
Q ss_pred --------------ceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEE-EEEeCCE-EEEEE
Q 009274 465 --------------GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA-LLYWQGK-LFVGC 526 (538)
Q Consensus 465 --------------~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~sg~ 526 (538)
..+..+.+ ++++ +|+.||.|++||+.+++......... +...+.+ .+.+++. |++|+
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~---~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN---AAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT---BCSCCCEEEECTTSSEEEEEE
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC---CCceEEEEEEecCccEEEEec
Confidence 22333433 6665 78899999999999888765554321 2345555 4445665 55665
Q ss_pred CCCeEEEEEcCC
Q 009274 527 ADRTVKVYYYGK 538 (538)
Q Consensus 527 ~dg~v~vw~~~~ 538 (538)
||.|++|++++
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=280.52 Aligned_cols=309 Identities=14% Similarity=0.141 Sum_probs=240.4
Q ss_pred eeeeeccCcceeEEeecCCeEEEEEeec-------CCCcEEEE-EEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCC
Q 009274 223 DQARAAGGVKDLVNGLSKGNVKFKDLQG-------HRDCVTGL-AVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD 292 (538)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~-------h~~~V~~l-~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 292 (538)
....+++++..++++..++.+.+|++.. +...+.++ .++ +++|++|+.||.|++||+.+++....+.+|.
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 139 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV 139 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc
Confidence 3567888899999999999999998642 11244444 555 8999999999999999999999988888999
Q ss_pred cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC
Q 009274 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG 372 (538)
Q Consensus 293 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 372 (538)
..|.+++|+|+ +.++++++.|+.|++||+.+++....+. .+.. .....++++++++|++|+.||.|++||++++
T Consensus 140 ~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~h~~--~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 140 SEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLI---GHRA--TVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp SCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEE---CCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred CccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEc---CCCC--cEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence 99999999995 4588999999999999998766544332 2222 2335578899999999999999999999999
Q ss_pred ceeEEecC---CCCCeEEEEE---------------------e--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCce
Q 009274 373 TLSCTMSG---HKSAVSTLAV---------------------C--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426 (538)
Q Consensus 373 ~~~~~~~~---h~~~v~~l~~---------------------~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 426 (538)
+.+..+.. |...|.++++ + ++++++|+.||.|++||+++++....+...+...+
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 293 (420)
T 3vl1_A 214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC 293 (420)
T ss_dssp EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCE
T ss_pred ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCc
Confidence 99988864 5556666666 3 34899999999999999999998888876555555
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEeCCc---ceeeecc-ccceEEEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeee
Q 009274 427 SSVLSLTAVQH-TLVVSHESGSIKVWRNDK---FMKSMQT-HKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 427 ~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~-h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 500 (538)
.. ++|+|++. ++++|+.||.|++||.++ ++..+.. |...+.++.+ ++++|++++.||.|++||+.........
T Consensus 294 ~~-~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 372 (420)
T 3vl1_A 294 NS-LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA 372 (420)
T ss_dssp EE-EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE
T ss_pred ee-EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc
Confidence 55 69999998 999999999999999654 3566666 6778888866 8889999999999999999764211111
Q ss_pred ecCC----c-ccCCCceEEEEEeCCE----EEEEECCCeEEEEEcCC
Q 009274 501 IPTG----A-IPCGSVITALLYWQGK----LFVGCADRTVKVYYYGK 538 (538)
Q Consensus 501 ~~~~----~-~~~~~~~~~~~~~~~~----l~sg~~dg~v~vw~~~~ 538 (538)
.... . .+...+....+.+++. +++++.+|.+.+|++++
T Consensus 373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 373 IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 0000 0 1122334444555554 99999999999999863
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=288.60 Aligned_cols=313 Identities=15% Similarity=0.184 Sum_probs=243.2
Q ss_pred ceeeeeccCcc-eeEEe----------ecCCeEEEEEee-----------cCCCcEEEEEEc--CCEEEEEeCCCcEEEE
Q 009274 222 IDQARAAGGVK-DLVNG----------LSKGNVKFKDLQ-----------GHRDCVTGLAVG--GGFLFSSSFDKSIHVW 277 (538)
Q Consensus 222 ~~~~~~~~~~~-~~~~~----------~~~~~~~i~~l~-----------~h~~~V~~l~~~--~~~l~s~s~dg~i~iw 277 (538)
+..+.+++++. .++++ ..++.+++|++. .|...|++++|+ +++|++|+.||.|++|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw 94 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence 34455566655 66666 678889999853 478899999998 8899999999999999
Q ss_pred eCCC----CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC------CCcceeeecccCCceeeeEEE
Q 009274 278 SLKD----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL------GHEPLKKWNEEKDWRYSGIHA 347 (538)
Q Consensus 278 d~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~ 347 (538)
|+.+ .+.+..+.+|...|.+++|+|+++.++++++.||.|++||+.+.. ..........+. ......+
T Consensus 95 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~ 172 (416)
T 2pm9_A 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV--DEVISLA 172 (416)
T ss_dssp CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS--CCCCEEE
T ss_pred ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC--CCeeEEE
Confidence 9987 458888999999999999999878899999999999999998765 222221112222 2233567
Q ss_pred Eeec-CCEEEEeeCCCcEEEEECCCCceeEEecCC------CCCeEEEEEe-C--CEEEEEecCC---cEEEEECCCC-c
Q 009274 348 LTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMSGH------KSAVSTLAVC-N--GVLYSGSRDG---TIRLWSLSDH-S 413 (538)
Q Consensus 348 ~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~-~--~~l~s~s~dg---~i~iwd~~~~-~ 413 (538)
++++ +.++++++.||.|++||+++++.+..+..| ...|.+++|+ + .++++++.|+ .|++||++++ +
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence 8888 679999999999999999999999888776 7899999999 2 3899999999 9999999987 5
Q ss_pred eeEEEe-cCCCCceEEEEEEcC-CCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CC-CEEEEEeCCCeE
Q 009274 414 LLTVLE-EDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EG-KWLFTGGWDKTV 486 (538)
Q Consensus 414 ~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~-~~l~sgs~dg~v 486 (538)
....+. .+ ...+.. ++|+| ++++|++++.||.|++||.. +.+..+..|...|.+++| ++ .+|++++.||.|
T Consensus 253 ~~~~~~~~~-~~~v~~-~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 253 PLQTLNQGH-QKGILS-LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp CSBCCCSCC-SSCEEE-EEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred CcEEeecCc-cCceeE-EEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 566565 33 444444 68999 99999999999999999954 577888899999999887 66 899999999999
Q ss_pred EEEecCCCeeEeeeec---------------------C---------CcccCCCce-EEEEEeCCE-EEEEECCCeEEEE
Q 009274 487 SVQELAGDEFEEDVIP---------------------T---------GAIPCGSVI-TALLYWQGK-LFVGCADRTVKVY 534 (538)
Q Consensus 487 ~iwd~~~~~~~~~~~~---------------------~---------~~~~~~~~~-~~~~~~~~~-l~sg~~dg~v~vw 534 (538)
++||+.+......... . ....+...+ ...+.++++ |++|+.||.|+||
T Consensus 331 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 331 EVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT 410 (416)
T ss_dssp EEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred EEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence 9999987653221100 0 000012233 445666877 5568889999999
Q ss_pred EcCC
Q 009274 535 YYGK 538 (538)
Q Consensus 535 ~~~~ 538 (538)
++.+
T Consensus 411 ~~~~ 414 (416)
T 2pm9_A 411 NPKI 414 (416)
T ss_dssp CCCC
T ss_pred Eecc
Confidence 9864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=284.58 Aligned_cols=300 Identities=22% Similarity=0.380 Sum_probs=246.0
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE--------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD--------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 289 (538)
..+..+.+.+++..++++..++.+++|+ +.+|...|++++|+ ++.+++++.|+.|++||. +++....+.
T Consensus 222 ~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~ 300 (577)
T 2ymu_A 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLT 300 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEe
Confidence 4567788888899999999999998885 56899999999998 889999999999999996 567888899
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
+|...|.+++|+|+ +.++++++.|+.|++||.... .+.....+.. .....+++|+++++++|+.|+.|++||.
T Consensus 301 ~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~~~~----~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 301 GHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQ----HLQTLTGHSS--SVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSC----EEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCC----eeEEEeCCCC--CEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 99999999999985 457899999999999997643 2222322222 2234688999999999999999999995
Q ss_pred CCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCc
Q 009274 370 LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS 447 (538)
Q Consensus 370 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 447 (538)
+++.+..+.+|...|.+++|+ +.+|++++.|+.|++||. +++.+..+..+. ..+.. ++|+|++++|++++.|+.
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~-~~v~~-~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVWG-VAFSPDDQTIASASDDKT 449 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS-SCEEE-EEECTTSSEEEEEETTSE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC-CCeEE-EEECCCCCEEEEEcCCCE
Confidence 678888999999999999999 459999999999999995 567777777653 44444 699999999999999999
Q ss_pred EEEEeC-CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE-E
Q 009274 448 IKVWRN-DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK-L 522 (538)
Q Consensus 448 i~iwd~-~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l 522 (538)
|++||. .+....+.+|...|.++++ ++++|++++.|+.|++||..+........ +...+..+.+ +++. |
T Consensus 450 v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~------h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC------CSSCEEEEEECTTSSCE
T ss_pred EEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC------CCCCEEEEEEcCCCCEE
Confidence 999994 4567888999999999887 89999999999999999976544333222 2334555544 5554 8
Q ss_pred EEEECCCeEEEEEcC
Q 009274 523 FVGCADRTVKVYYYG 537 (538)
Q Consensus 523 ~sg~~dg~v~vw~~~ 537 (538)
++++.||.|++||..
T Consensus 524 ~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 524 ASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEETTSEEEEECTT
T ss_pred EEEECcCEEEEEeCC
Confidence 899999999999963
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=269.05 Aligned_cols=266 Identities=19% Similarity=0.274 Sum_probs=202.7
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEe------------ec-CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC----
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL------------QG-HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD---- 281 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l------------~~-h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~---- 281 (538)
.+....+.++ .++++..++.+++|++ .+ |.+.|++++|+ +++|++|+.|++|++||+..
T Consensus 16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence 4666666655 8889999999998864 23 99999999999 89999999999999999843
Q ss_pred ---CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC-CCCcceeeecccCCceeeeEEEEeecCCEEEE
Q 009274 282 ---FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP-LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357 (538)
Q Consensus 282 ---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (538)
.+.+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+... .....+..+..+.. ....++++|++++|++
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ--DVKHVIWHPSEALLAS 170 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS--CEEEEEECSSSSEEEE
T ss_pred cccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC--ceEEEEECCCCCEEEE
Confidence 4567788999999999999995 568899999999999999543 22233333433332 2334578899999999
Q ss_pred eeCCCcEEEEECCCC--ceeEEecCCCCCeEEEEEeC----CEEEEEecCCcEEEEECCCC--------ceeEEEecCCC
Q 009274 358 GSGDRTIKAWSLLDG--TLSCTMSGHKSAVSTLAVCN----GVLYSGSRDGTIRLWSLSDH--------SLLTVLEEDSS 423 (538)
Q Consensus 358 g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~ 423 (538)
|+.|++|++||..++ +++..+.+|...|.+++|++ .+|++|+.|++|++||++++ .....+...+.
T Consensus 171 ~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 999999999998876 67888999999999999993 27999999999999999764 23334433344
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc----e-eeeccccc-eEEEEEe----CCCEEEEEeCCCeEEEEecCC
Q 009274 424 GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----M-KSMQTHKG-SVFAVFL----EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~-~~~~~h~~-~v~~~~~----~~~~l~sgs~dg~v~iwd~~~ 493 (538)
..+.. ++|++++ +|++++.||.|++||.... . ....+|.. .|.+++| ++++|++|+.||+|++||++.
T Consensus 251 ~~v~~-v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 251 RQVYN-VAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEE-EEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEE-EEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 55554 6888655 8999999999999995431 2 23356877 8988876 478999999999999999864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=264.31 Aligned_cols=267 Identities=17% Similarity=0.266 Sum_probs=225.3
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
..+..+.+.+++..++++..++.+++|+ +.+|...|.+++|+ +++|++|+.|+.|++||+.+++.+..+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 3578888999999999999999999987 46899999999999 899999999999999999999999999
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
++|...|.+++|+|+ +.++++|+.|+.|++||+++++.. ..+..+.. .....+++++++++++|+.||.|++||
T Consensus 104 ~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWD 177 (312)
T ss_dssp ECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEE---EEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEE---EEecCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 999999999999985 558899999999999999876433 22222222 233457888999999999999999999
Q ss_pred CCCCceeEEe-cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceE-EEEEEcCCCCEEEEEeC
Q 009274 369 LLDGTLSCTM-SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS-SVLSLTAVQHTLVVSHE 444 (538)
Q Consensus 369 ~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 444 (538)
+++++.+..+ ..+...+.+++|+ ++++++++.|+.|++||+++++.+..+..+...... ......+++.++++|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp TTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT
T ss_pred CCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC
Confidence 9999888776 4566789999999 559999999999999999999998888766443222 22234577899999999
Q ss_pred CCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEe--CCCeEEEEecC
Q 009274 445 SGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGG--WDKTVSVQELA 492 (538)
Q Consensus 445 dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs--~dg~v~iwd~~ 492 (538)
||.|++||.. +.+..+.+|...|.++++ +++++++++ .|++|++|+..
T Consensus 258 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999954 567889999999999887 889999987 69999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=275.06 Aligned_cols=307 Identities=17% Similarity=0.186 Sum_probs=245.1
Q ss_pred cceeeeeccCcc-eeEEeecCCeEEEEEe----e---------------c----------CCCcEEEEEEc--CCEEEEE
Q 009274 221 DIDQARAAGGVK-DLVNGLSKGNVKFKDL----Q---------------G----------HRDCVTGLAVG--GGFLFSS 268 (538)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~l----~---------------~----------h~~~V~~l~~~--~~~l~s~ 268 (538)
.+..+.+++++. .++++..++.+.+|++ . . |.+.|++++|+ +++|+++
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 467788888888 8999999999999988 2 1 57799999999 8999999
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCC---------
Q 009274 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD--------- 339 (538)
Q Consensus 269 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------- 339 (538)
+.||.|++|| .+++.+..+..|...|.+++|+|+ +.++++++.||.|++||+.++.....+........
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence 9999999999 678889999999999999999985 45778999999999999986543332222111100
Q ss_pred -ceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeE
Q 009274 340 -WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLT 416 (538)
Q Consensus 340 -~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 416 (538)
.......+++++ ..+++++.||.|++||+++++.+..+..|...|.+++|+ +++|++++.|+.|++||+++++.+.
T Consensus 205 ~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 283 (425)
T 1r5m_A 205 DGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283 (425)
T ss_dssp -CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE
T ss_pred CcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce
Confidence 000223466665 468899999999999999999999999999999999999 5599999999999999999999888
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
.+..+. ..+.. +.|+|++ ++++++.|+.|++||.. +....+..|...+.++.+ ++++|++++.||.|++||+.
T Consensus 284 ~~~~~~-~~i~~-~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 284 CFYGHS-QSIVS-ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EECCCS-SCEEE-EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred EecCCC-ccEEE-EEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 887653 34444 7999999 99999999999999964 467778889999999887 79999999999999999998
Q ss_pred CCe--------------------eEeeeecCCcccCCC-ceEEEEE-eCC-EEEEEECCCeEEEEEcC
Q 009274 493 GDE--------------------FEEDVIPTGAIPCGS-VITALLY-WQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 493 ~~~--------------------~~~~~~~~~~~~~~~-~~~~~~~-~~~-~l~sg~~dg~v~vw~~~ 537 (538)
+.+ ........ ... .+..+.+ +++ .|++++.||.|++|++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 361 KLNSKSRSLYGNRDGILNPLPIPLYASYQSS----QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHHC--------------CEECCEEEEECCT----TCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCccceeeeecccccccCcccchhhhhhcCc----ccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 765 33332221 121 4555555 455 58899999999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=274.15 Aligned_cols=264 Identities=19% Similarity=0.333 Sum_probs=213.2
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe---------ecCC------------------CcEEEEEEc--CCEEEEEeC
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHR------------------DCVTGLAVG--GGFLFSSSF 270 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~------------------~~V~~l~~~--~~~l~s~s~ 270 (538)
..+.++.+++++..++++. ++.+++|.+ .+|. ..|++++|+ +++|++|+.
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 3477888999988888875 566777763 2332 249999999 899999999
Q ss_pred CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee
Q 009274 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT 350 (538)
Q Consensus 271 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (538)
|++|++||+.+++.+..+.+|...|.+++|+|++ .++++++.|++|++||+.++.....+. .. ......++++
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~---~~v~~~~~~~ 216 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS---IE---DGVTTVAVSP 216 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE---CS---SCEEEEEECS
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE---cC---CCcEEEEEEC
Confidence 9999999999999999999999999999999965 577999999999999998754322221 11 1123457777
Q ss_pred -cCCEEEEeeCCCcEEEEECCCCceeEEe-------cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCc-------
Q 009274 351 -SGRYLYTGSGDRTIKAWSLLDGTLSCTM-------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS------- 413 (538)
Q Consensus 351 -~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~------- 413 (538)
+++++++|+.|+.|++||+++++.+..+ .+|...|.+++|+ +.+|++|+.|++|++||+++..
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 7889999999999999999999887776 5799999999999 5599999999999999997643
Q ss_pred -----eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEe--------CCCEEE
Q 009274 414 -----LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--------EGKWLF 478 (538)
Q Consensus 414 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--------~~~~l~ 478 (538)
+...+..| ...+.. +++++++.+|++|+.|+.|++||. ++.+..+.+|...|.++++ ++++|+
T Consensus 297 ~~~~~~~~~~~~h-~~~v~~-~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 297 PNSGTCEVTYIGH-KDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp ----CEEEEEECC-SSCEEE-EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred CCCCcceEEEecc-cCcEEE-EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence 33444444 344444 699999999999999999999995 4577888999999999986 367999
Q ss_pred EEeCCCeEEEEecCC
Q 009274 479 TGGWDKTVSVQELAG 493 (538)
Q Consensus 479 sgs~dg~v~iwd~~~ 493 (538)
+|+.||+|++|++..
T Consensus 375 sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 375 TGSGDCKARIWKYKK 389 (393)
T ss_dssp EEETTSEEEEEEEEE
T ss_pred EECCCCcEEECcccc
Confidence 999999999999854
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=265.42 Aligned_cols=265 Identities=17% Similarity=0.287 Sum_probs=207.8
Q ss_pred cceeeee-----cc-CcceeEEeecCCeEEEEEe----------------ecCCCcEEEEEEc--CCEEEEEeCCCcEEE
Q 009274 221 DIDQARA-----AG-GVKDLVNGLSKGNVKFKDL----------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHV 276 (538)
Q Consensus 221 ~~~~~~~-----~~-~~~~~~~~~~~~~~~i~~l----------------~~h~~~V~~l~~~--~~~l~s~s~dg~i~i 276 (538)
.+..+.+ .+ ++..++++..++.+++|++ .+|...|++++|+ +.++++|+.|++|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 3555655 44 6778999999999999874 5799999999998 889999999999999
Q ss_pred EeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecC----
Q 009274 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG---- 352 (538)
Q Consensus 277 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 352 (538)
||+.+++.+..+.+|...|.+++|+|++ .++++++.|++|++||+..... ........+. ......+++|++
T Consensus 103 wd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~--~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 103 WDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-FSSAEKENHS--DWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE-EECCTTTSCS--SCEEEEEECCCCCSCS
T ss_pred EECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce-eeeecccCCC--ceeeeeeecccccccc
Confidence 9999999999999999999999999954 5779999999999999863211 0000001111 223345666665
Q ss_pred ------CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCC-CceeEEEecCCC
Q 009274 353 ------RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD-HSLLTVLEEDSS 423 (538)
Q Consensus 353 ------~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~ 423 (538)
.++++++.|+.|++|| .+.+....+.+|...|.+++|+ +.+|++|+.|+.|++||+++ ......+...
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-- 255 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG-- 255 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS--
T ss_pred ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC--
Confidence 6899999999999999 4567778889999999999999 55999999999999999954 4444444332
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--cee--eec-----------cccceEEEEEe--CCCEEEEEeCCCeE
Q 009274 424 GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMK--SMQ-----------THKGSVFAVFL--EGKWLFTGGWDKTV 486 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~--~~~-----------~h~~~v~~~~~--~~~~l~sgs~dg~v 486 (538)
.. ...++|+|++.+++++ .|+.|++||... ... .+. +|...|.+++| ++++|++|+.||.|
T Consensus 256 ~~-v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 256 ST-INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp SC-EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred Cc-EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence 22 3447999999887655 578899999543 211 332 68888999887 89999999999999
Q ss_pred EEEecCCC
Q 009274 487 SVQELAGD 494 (538)
Q Consensus 487 ~iwd~~~~ 494 (538)
++|+++++
T Consensus 334 ~~w~~~~g 341 (343)
T 2xzm_R 334 RTFSFETS 341 (343)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 99998654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=274.78 Aligned_cols=268 Identities=16% Similarity=0.171 Sum_probs=209.0
Q ss_pred ccceeeeeccCcceeEEeec------CCeEEEEEe-------------ecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeC
Q 009274 220 ADIDQARAAGGVKDLVNGLS------KGNVKFKDL-------------QGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSL 279 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~~l-------------~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~ 279 (538)
..|..+.+++++..+++++. ++.+.+|.. .+|...|++++|+ .+.+++++.||+|+|||+
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~ 122 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEI 122 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeec
Confidence 45888999999999999986 566777652 4689999999999 778888999999999999
Q ss_pred CCCceE----EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-E
Q 009274 280 KDFSHV----HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-Y 354 (538)
Q Consensus 280 ~~~~~~----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 354 (538)
.+++.. ....+|...|.+++|+|+ +.++++|+.|++|++||++++... ..+..+.. ....++++++++ +
T Consensus 123 ~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~---~~~~~h~~--~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 123 LEKESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVL---KSYNAHSS--EVNCVAACPGKDTI 196 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEE---EEECCCSS--CEEEEEECTTCSSC
T ss_pred cccceeEEEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEE---EEEcCCCC--CEEEEEEccCCCce
Confidence 887654 234579999999999995 457899999999999999875433 33333332 223456777765 8
Q ss_pred EEEeeCCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEE
Q 009274 355 LYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429 (538)
Q Consensus 355 l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 429 (538)
+++++.||.|++||++++++...+ ..|...+.+++|+ +.+|++|+.|+.|++||+++++.+..+..+. ..+..
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~- 274 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS-QNITG- 274 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS-SCEEE-
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc-eeEEE-
Confidence 999999999999999998877655 4567789999998 3489999999999999999999998887664 34444
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEeCCc-ceeeeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCe
Q 009274 430 LSLTAVQ-HTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 430 ~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
++|+|++ ++|++|+.|++|++||... ......+|.+.|++++| ++++|++++.||+|++||+....
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 6999987 6799999999999999653 23344589999999986 68899999999999999997643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=263.35 Aligned_cols=281 Identities=16% Similarity=0.215 Sum_probs=228.6
Q ss_pred eEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
..+...+.+|.+.|++++|+ +++|++++.||.|++||+.+++.+..+.+|...|.+++|+|+ +.++++++.||.|++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKL 100 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEE
Confidence 44667799999999999999 899999999999999999999999999999999999999984 568899999999999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC-----CcEEEEECCCCc-----------eeEEecCCCC
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD-----RTIKAWSLLDGT-----------LSCTMSGHKS 383 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~i~iwd~~~~~-----------~~~~~~~h~~ 383 (538)
||+.+++....+. .. ......+++++++++++++.+ +.|++||+.+.. ....+..|..
T Consensus 101 wd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 101 WDVSNGQCVATWK---SP---VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EETTTCCEEEEEE---CS---SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EECCCCcEEEEee---cC---CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 9998765433332 11 223456889999999999999 999999997653 3445556666
Q ss_pred --CeEEEEEe--CCEEEEEecCCcEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--c
Q 009274 384 --AVSTLAVC--NGVLYSGSRDGTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--F 456 (538)
Q Consensus 384 --~v~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~ 456 (538)
.+.+++|+ ++++++++.||.|++||+++ ++.+..+..+ ...+.. ++|+|++++|++++.||.|++||... .
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISD-MQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeE-EEECCCCCEEEEecCCceEEEEECCCCce
Confidence 99999999 56999999999999999998 6777777665 344444 79999999999999999999999654 4
Q ss_pred eeeeccccceEEEEEe--CCCEEEEEeCCC--------------eEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eC
Q 009274 457 MKSMQTHKGSVFAVFL--EGKWLFTGGWDK--------------TVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQ 519 (538)
Q Consensus 457 ~~~~~~h~~~v~~~~~--~~~~l~sgs~dg--------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 519 (538)
...+. +...+.++.+ +++++++++.++ .+++||..+++....... +...+..+.+ ++
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-----HFGPLNTVAISPQ 326 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC-----CSSCEEEEEECTT
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec-----ccCcEEEEEECCC
Confidence 44444 6677877776 899999999998 899999998877655443 2334555555 44
Q ss_pred C-EEEEEECCCeEEEEEcC
Q 009274 520 G-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 520 ~-~l~sg~~dg~v~vw~~~ 537 (538)
+ .|++|+.||.|++|++.
T Consensus 327 ~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SSEEEEEETTSEEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECc
Confidence 4 58889999999999985
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=281.95 Aligned_cols=290 Identities=14% Similarity=0.176 Sum_probs=215.3
Q ss_pred EEEEEe-ecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC---Cc---eEEEEecCCcCeEEEEEecCCCCEEEEEc
Q 009274 243 VKFKDL-QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD---FS---HVHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (538)
Q Consensus 243 ~~i~~l-~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~---~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 312 (538)
..+..+ ++|.+.|++++|+ +++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+| ++.++++++
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s 130 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP-NFDAFAVSS 130 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT-TSSEEEEEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC-CCCEEEEEe
Confidence 456677 8999999999998 57999999999999999876 33 33444 4999999999998 556889999
Q ss_pred CCCcEEEEEcc---CCCCCccee-----eec--c--cCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC
Q 009274 313 SGGGIFVWSFS---FPLGHEPLK-----KWN--E--EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG 380 (538)
Q Consensus 313 ~dg~i~vwd~~---~~~~~~~~~-----~~~--~--~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 380 (538)
.||.|++||+. ++....... ... . ...........++++++++++|+.|+.|++||+++++.+..+.+
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 99999999995 332211111 111 0 11111111112456788999999999999999999999999988
Q ss_pred --CCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEc----CCCCEEEEEeCCCcEEEEe
Q 009274 381 --HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT----AVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 381 --h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~dg~i~iwd 452 (538)
|...|++++|+ +.+|++|+.||.|++||+++++.+..+...+...+.. ++++ +++.++++|+.||.|++||
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITH-VEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEE-EEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEE-EEeccccCCCccEEEEEcCCCcEEEEE
Confidence 89999999998 5699999999999999999999988886444444443 5444 5688999999999999999
Q ss_pred CCc--ceeeecc--------------------------ccceEEEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecC
Q 009274 453 NDK--FMKSMQT--------------------------HKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (538)
Q Consensus 453 ~~~--~~~~~~~--------------------------h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 503 (538)
..+ ....+.+ |...|.++++ ++++|++|+.||.|++||+.+++........
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 653 3333332 6666777777 7789999999999999999887644333321
Q ss_pred C--------------------------------cccCCCceEEEEEe-C--C-EEEEEECCCeEEEEE
Q 009274 504 G--------------------------------AIPCGSVITALLYW-Q--G-KLFVGCADRTVKVYY 535 (538)
Q Consensus 504 ~--------------------------------~~~~~~~~~~~~~~-~--~-~l~sg~~dg~v~vw~ 535 (538)
. ...+...+.++.+. + + .|++|+.||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0 00134455555443 3 3 588999999999995
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=290.23 Aligned_cols=284 Identities=24% Similarity=0.385 Sum_probs=217.0
Q ss_pred EEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC-----ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCc
Q 009274 245 FKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-----SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 316 (538)
...+++|.+.|++++|+ +++|+||+.|++|++||+.+. .....+.+|...|.+++|+|+ +.++++|+.||+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGE 453 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCc
Confidence 34689999999999998 579999999999999998753 456788999999999999985 568899999999
Q ss_pred EEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeEEEEEeC-
Q 009274 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVSTLAVCN- 392 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~- 392 (538)
|++||+.++... ..+..|.. ....+++++++++|++|+.|++|++||.......... .+|...|.+++|++
T Consensus 454 v~vwd~~~~~~~---~~~~~h~~--~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 454 LRLWDLAAGVST---RRFVGHTK--DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEETTTTEEE---EEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred EEEEECCCCcce---eEEeCCCC--CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 999999865433 33333332 2234578899999999999999999998654433322 46889999999982
Q ss_pred ---CEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceE
Q 009274 393 ---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSV 467 (538)
Q Consensus 393 ---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v 467 (538)
..+++++.|++|++||+++++....+..|. +.+.+ ++++|++++|++|+.||.|++||..+ .+..+. +...+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~-~~v~~-v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v 605 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT-GYVST-VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVI 605 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcE
Confidence 379999999999999999999888887663 44444 79999999999999999999999654 344444 34578
Q ss_pred EEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcc--------------cCCCceEEEEE-eCC-EEEEEECCC
Q 009274 468 FAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI--------------PCGSVITALLY-WQG-KLFVGCADR 529 (538)
Q Consensus 468 ~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~~-~l~sg~~dg 529 (538)
.++++ ++.++++++ |+.|++||+.++............ .....+..+.+ +++ .|++|+.||
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 88877 666666655 667999999998766544321110 01112444544 454 588999999
Q ss_pred eEEEEEcCC
Q 009274 530 TVKVYYYGK 538 (538)
Q Consensus 530 ~v~vw~~~~ 538 (538)
.|++|+++.
T Consensus 685 ~i~iW~i~~ 693 (694)
T 3dm0_A 685 VIRVWGIGR 693 (694)
T ss_dssp EEEEEEC--
T ss_pred eEEEEeccC
Confidence 999999863
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=274.35 Aligned_cols=258 Identities=24% Similarity=0.427 Sum_probs=219.9
Q ss_pred cCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEE
Q 009274 229 GGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 299 (538)
.++..++++..++.+++|+ +.+|.+.|++++|+++++++|+.||+|++||+.+++.+..+.+|...|.+++
T Consensus 141 ~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 220 (435)
T 1p22_A 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220 (435)
T ss_dssp CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence 3678899999999999987 4589999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec
Q 009274 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS 379 (538)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 379 (538)
|++ .++++|+.||.|++||+.++...........+.. .+.++.++++++++|+.||.|++||+++++.+..+.
T Consensus 221 ~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 221 FNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA----AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp CCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS----CEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC----cEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence 953 4889999999999999987665433333333332 356777799999999999999999999999999999
Q ss_pred CCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--c--
Q 009274 380 GHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--K-- 455 (538)
Q Consensus 380 ~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~-- 455 (538)
+|...|.++.++++++++|+.||.|++||+++++.+..+..+. ..+.. +++ ++.++++|+.||.|++||.. .
T Consensus 294 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~-~~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 369 (435)
T 1p22_A 294 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRC-IRF--DNKRIVSGAYDGKIKVWDLVAALDP 369 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEE-EEC--CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc-CcEEE-EEe--cCCEEEEEeCCCcEEEEECCCCCCc
Confidence 9999999999999999999999999999999999999888654 33333 344 88999999999999999943 1
Q ss_pred -------ceeeeccccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeE
Q 009274 456 -------FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFE 497 (538)
Q Consensus 456 -------~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~ 497 (538)
....+.+|.+.|.++++++++|++|+.||.|++||+.+....
T Consensus 370 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 370 RAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp TSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-------
T ss_pred cccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 577888999999999999999999999999999999876543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=280.04 Aligned_cols=283 Identities=12% Similarity=0.114 Sum_probs=207.1
Q ss_pred EeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceE--EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 247 DLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHV--HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
...+|...|+|++|+ +++||+|+.||+|+|||+.+++.. ..+.+|.+.|++++|+|.++.+|++|+.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 456799999999998 679999999999999999877654 445689999999999998888999999999999999
Q ss_pred ccCCCCCcceeeecc-cCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEE
Q 009274 322 FSFPLGHEPLKKWNE-EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYS 397 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s 397 (538)
+++.. ...... +.........++++++++|++|+.||.|++||++ ++.+..+.+|...|++++|+ +.++++
T Consensus 194 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 194 FKGNI----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp TTSCE----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred ccCCc----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEE
Confidence 97532 111111 1111223356888999999999999999999986 46677889999999999998 238889
Q ss_pred EecCCcEEEEECCCCceeEEEe--cCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccce------E
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLE--EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGS------V 467 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~------v 467 (538)
|+.|++|++||+++.+....+. ..|...+.. ++|+|++++|++++.||.|++||... ....+..|... +
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA-ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEE-CCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccc-eeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 9999999999999876544332 223444444 68999999999999999999999653 44444444321 1
Q ss_pred EEE--EeCCCEEEEEe------------CCCeEEEEecCCCeeEeeeecCCcccCCCceEEE-EEeCCEEEEEECCCeEE
Q 009274 468 FAV--FLEGKWLFTGG------------WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQGKLFVGCADRTVK 532 (538)
Q Consensus 468 ~~~--~~~~~~l~sgs------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~v~ 532 (538)
... .+++..+++++ .++.|++||..+++......... ...+.... +.+++.+++++.|+.|+
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~---~~~v~s~~~fspdg~~lasg~d~~i~ 424 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE---SSGISSLNEFNPMGDTLASAMGYHIL 424 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS---CCCCCCEEEECTTSSCEEEECSSEEE
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC---CCcEEEEEEECCCCCEEEEEcCCcEE
Confidence 111 22444444443 34679999999988765543221 22233333 45677766666799999
Q ss_pred EEEcCC
Q 009274 533 VYYYGK 538 (538)
Q Consensus 533 vw~~~~ 538 (538)
||++.+
T Consensus 425 iW~~~~ 430 (435)
T 4e54_B 425 IWSQQE 430 (435)
T ss_dssp ECCCC-
T ss_pred EEECCc
Confidence 999863
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=259.96 Aligned_cols=243 Identities=14% Similarity=0.230 Sum_probs=195.7
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC--CceEEEEecCCcCeEEEEEecC-CCCEEEEEcCCCcEEEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVW 320 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vw 320 (538)
..+.+|.+.|++++|+ +++|++|+.|++|+|||+.+ .+.+.++.+|.++|.+++|+++ ++.+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 3578999999999999 99999999999999999974 4678899999999999999864 46799999999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeec--CCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEeC----
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVCN---- 392 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~---- 392 (538)
|++++.... +.....+.. ....++++|+ +.+|++|+.|+.|++||++++. ....+.+|...|.+++|++
T Consensus 83 d~~~~~~~~-~~~~~~h~~--~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 83 KEENGRWSQ-IAVHAVHSA--SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EBSSSCBCC-CEEECCCSS--CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EcCCCceEE-EEEeecCCC--ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 998654221 222222222 2334577776 7899999999999999998763 2456788999999999984
Q ss_pred -----------CEEEEEecCCcEEEEECCCCc----eeEEEecCCCCceEEEEEEcCCC---CEEEEEeCCCcEEEEeCC
Q 009274 393 -----------GVLYSGSRDGTIRLWSLSDHS----LLTVLEEDSSGAVSSVLSLTAVQ---HTLVVSHESGSIKVWRND 454 (538)
Q Consensus 393 -----------~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~ 454 (538)
.+|++|+.|++|++||+++++ ....+..| ...+.. ++|+|++ .+|++++.|++|++||..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~-v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRD-VAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEE-EEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEE-EEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 389999999999999998876 44555554 444444 6999984 899999999999999965
Q ss_pred cc-----eeee--ccccceEEEEEe--CCCEEEEEeCCCeEEEEecCC
Q 009274 455 KF-----MKSM--QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 455 ~~-----~~~~--~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~ 493 (538)
.. ...+ ..|...|.+++| ++++|++++.||.|++|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 31 1233 467889998887 899999999999999999863
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=266.00 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=221.2
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
+..|.++|++++|+ +++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|+ +.++++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECC
Confidence 45699999999999 8899999999999999999987 88999999999999999994 5688999999999999997
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce---e-EEecCCCCCeEEEEEe--CCEEEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL---S-CTMSGHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~-~~~~~h~~~v~~l~~~--~~~l~s 397 (538)
+......... ..+. ......+++++++++++++.|+.|++||++.++. . .....|...|.+++|+ ++++++
T Consensus 83 ~~~~~~~~~~-~~~~--~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 83 GRTWKPTLVI-LRIN--RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TTEEEEEEEC-CCCS--SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCeeeeeEEe-ecCC--CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 6542222111 1111 2234567888999999999999999999988763 2 3336789999999999 559999
Q ss_pred EecCCcEEEEECC------------------CCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccce
Q 009274 398 GSRDGTIRLWSLS------------------DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFM 457 (538)
Q Consensus 398 ~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~ 457 (538)
++.|+.|++||++ .++.+..+..+ ...+.. ++|+|++++|++++.||.|++||. .+.+
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHG-VCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEE-EEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEE-EEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 9999999999954 56777777654 334444 799999999999999999999995 4577
Q ss_pred eeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCC--CeeEeeee--------------------------------
Q 009274 458 KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG--DEFEEDVI-------------------------------- 501 (538)
Q Consensus 458 ~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~--~~~~~~~~-------------------------------- 501 (538)
..+..|...+.++.+ ++.++++| .|+.|++|++.+ +.......
T Consensus 238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 888899999998877 77777777 999999999987 43211000
Q ss_pred --cCCcccCCCceEEEE-Ee-C----CEEEEEECCCeEEEEEcC
Q 009274 502 --PTGAIPCGSVITALL-YW-Q----GKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 502 --~~~~~~~~~~~~~~~-~~-~----~~l~sg~~dg~v~vw~~~ 537 (538)
......+...+.++. ++ + ..|++|+.||.|++|++.
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 000012444566664 53 5 479999999999999974
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=264.27 Aligned_cols=290 Identities=18% Similarity=0.240 Sum_probs=214.8
Q ss_pred eEEEEEeecCCCcEEEEEEc--CC-EEEEEeC---CCcEEEEeCCCCceEEEE-ecCCcCeEEEEEecCC--CCEEEEEc
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GG-FLFSSSF---DKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDED--QPLCISGD 312 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~-~l~s~s~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~--~~~l~s~~ 312 (538)
.+....+++|.+.|++++|+ ++ ++++|+. ||.|++||+.+++..... .+|...|.+++|+|++ +.++++++
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 34445678899999999999 54 5556665 999999999998876543 3799999999999974 67889999
Q ss_pred CCCcEEEEEccCCCCCcceeeecccCCceeeeEE-----EEeecCCEEEEeeCCCcEEEEECCCCc-eeEEecCCCC---
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH-----ALTTSGRYLYTGSGDRTIKAWSLLDGT-LSCTMSGHKS--- 383 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~--- 383 (538)
.||.|++||+.++.. ....+..+.. ....+. ++++++++|++|+.||.|++||+++++ .+..+..|.+
T Consensus 88 ~dg~i~iwd~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEM--PVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp TTSCEEEECTTSCSS--CSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred CCCeEEEEeCCCCCc--cEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 999999999987651 2233333332 122121 346789999999999999999999887 7777766554
Q ss_pred -CeEEEEE----e--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC---CCCEEEEEeCCCcEEEEeC
Q 009274 384 -AVSTLAV----C--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA---VQHTLVVSHESGSIKVWRN 453 (538)
Q Consensus 384 -~v~~l~~----~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~ 453 (538)
.+.+++| + +.++++++.|+.|++||+++++....... ...+. .+.|+| +++++++++.||.|++||.
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI--KNGVC-SLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEE-EEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC--CCceE-EEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8999984 4 56999999999999999999887555432 33444 479999 9999999999999999995
Q ss_pred Cc--ceeee-----ccccceEEEEEe--CCC-EEEEEeCCCeEEEEecCCCeeEee---------------eecCCcccC
Q 009274 454 DK--FMKSM-----QTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGDEFEED---------------VIPTGAIPC 508 (538)
Q Consensus 454 ~~--~~~~~-----~~h~~~v~~~~~--~~~-~l~sgs~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~ 508 (538)
+. ....+ .+|...|.++.+ +++ +|++++.||.|++||+........ ..... ..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ 320 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLS 320 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccC
Confidence 43 33333 489999999987 666 899999999999999975432110 00000 013
Q ss_pred CCceEEEEE-eCCE-EE-EEECCCeEEEEEcCC
Q 009274 509 GSVITALLY-WQGK-LF-VGCADRTVKVYYYGK 538 (538)
Q Consensus 509 ~~~~~~~~~-~~~~-l~-sg~~dg~v~vw~~~~ 538 (538)
...+..+.+ +++. |+ +|+.||.|++|++.+
T Consensus 321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 345555555 4544 66 799999999999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=276.16 Aligned_cols=238 Identities=13% Similarity=0.108 Sum_probs=184.5
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC--ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
++.|.++|++++|+ +++|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++ .++++++.|++|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcC
Confidence 44577899999999 899999999999999999988 7788899999999999999965 577999999999999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc---eeEEecC-CCCCeEEEEEe--CCEEEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT---LSCTMSG-HKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~-h~~~v~~l~~~--~~~l~s 397 (538)
++...........+.. .....++++++++|++|+.|+.|++||+++++ ....+.+ |...|.+++|+ +++|++
T Consensus 86 ~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNR--AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---CCCCEEECCCCSS--CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeeEecccCC--ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 7662233333333322 23355778899999999999999999999887 4677777 99999999999 459999
Q ss_pred EecCCcEEEEECCC------------------CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--c-
Q 009274 398 GSRDGTIRLWSLSD------------------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--F- 456 (538)
Q Consensus 398 ~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~- 456 (538)
++.|+.|++||++. ++.+..+ .+...+.. ++|+|++++|++++.||.|++||... .
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHA-VGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEE-EEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEE-EEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 99999999999963 3344444 33444444 79999999999999999999999543 3
Q ss_pred ---eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 457 ---MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 457 ---~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+..+.+|...|.+++| ++++|++|+.|+.+ +|+..
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 6788899999999877 88899988876666 66654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=270.40 Aligned_cols=284 Identities=13% Similarity=0.232 Sum_probs=215.6
Q ss_pred EeecCCCcEEEEEEc------CCEEEEEeCCCcEEEEeCCCCceEEEEec-----CCcCeEEEEEecCC---CCEEEEEc
Q 009274 247 DLQGHRDCVTGLAVG------GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-----HDHKVMAVVYVDED---QPLCISGD 312 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~---~~~l~s~~ 312 (538)
...+|.++|++++|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+. +.++++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 356899999999998 35577777788999999998888777764 55789999999974 35889999
Q ss_pred CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeEEE
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVSTL 388 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l 388 (538)
.||.|++||+.+++... .+..+. ......++++ +++++++|+.||.|++||+++++.+..+ .+|...|.++
T Consensus 93 ~dg~i~v~d~~~~~~~~---~~~~~~--~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIK---HYVGHG--NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEE---EEESCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred CCCEEEEEEchhceEee---eecCCC--CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence 99999999998764432 333222 2233457788 8889999999999999999999998888 7899999999
Q ss_pred EEe--CCEEEEEecCCcEEEEECCCCceeEEEec---------------------------CCCCceEEEEEEcCCCCEE
Q 009274 389 AVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE---------------------------DSSGAVSSVLSLTAVQHTL 439 (538)
Q Consensus 389 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~l 439 (538)
+|+ ++++++++.|+.|++||+++++....+.. .+...+.. +.++ ++++
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~--~~~l 244 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC-VRWL--GDLI 244 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE-EEEE--TTEE
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE-EEEc--CCEE
Confidence 999 56999999999999999998765433321 12333443 5666 7799
Q ss_pred EEEeCCCcEEEEeCCc----------------ceeeeccccceEEEEEe--C--CCEEEEEeCCCeEEEEecCCCeeEee
Q 009274 440 VVSHESGSIKVWRNDK----------------FMKSMQTHKGSVFAVFL--E--GKWLFTGGWDKTVSVQELAGDEFEED 499 (538)
Q Consensus 440 ~~~~~dg~i~iwd~~~----------------~~~~~~~h~~~v~~~~~--~--~~~l~sgs~dg~v~iwd~~~~~~~~~ 499 (538)
++++.||.|++||..+ .+..+..|...|.++.+ + +++|++|+.||.|++||+.+++....
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 9999999999999543 25566778888877754 7 99999999999999999998753210
Q ss_pred -eecCCcccCCCceEEEEEe-CC-EEEEEECCCeEEEEEcCC
Q 009274 500 -VIPTGAIPCGSVITALLYW-QG-KLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 500 -~~~~~~~~~~~~~~~~~~~-~~-~l~sg~~dg~v~vw~~~~ 538 (538)
........+...+..+.+. ++ .|++|+.||.|++||+.+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 0011111123456665554 44 588899999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=302.95 Aligned_cols=307 Identities=16% Similarity=0.233 Sum_probs=247.1
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEE
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT 287 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~ 287 (538)
...+..+.+++++..++++..++.+.+|+ +.+|.+.|++++|+ ++++++++.||+|++||+.+++.+..
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 45688899999999999999999999987 46899999999999 89999999999999999999999999
Q ss_pred EecCCcCeEEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEE
Q 009274 288 FKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (538)
Q Consensus 288 ~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~i 366 (538)
+.+|...|.+++|+|+ +..++++|+.||.|++||+.++.... ....+.. .....+++|+++++++|+.||.|++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~--~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTN--SVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSS--CEEEEEECSSTTEEEEEESSSEEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCC--CEEEEEEecCCCEEEEEECCCeEEE
Confidence 9999999999999986 45688999999999999998765332 2223322 2335688999999999999999999
Q ss_pred EECCCCceeEEe-------------------------------------------------------cCCCCCeEEEEEe
Q 009274 367 WSLLDGTLSCTM-------------------------------------------------------SGHKSAVSTLAVC 391 (538)
Q Consensus 367 wd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~l~~~ 391 (538)
||+++++....+ .+|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 998776543322 2677889999999
Q ss_pred --CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------------
Q 009274 392 --NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--------------- 454 (538)
Q Consensus 392 --~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------------- 454 (538)
+.++++++.|+.|++||+.++..+..+..+. ..+.. ++|+|+++++++++.||.|++||..
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~-v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHL-SWVHG-VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc-cceEE-EEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Confidence 5699999999999999999998888887653 34443 6888888888888888888888721
Q ss_pred ------------------------------------------------------------------cceeeeccccceEE
Q 009274 455 ------------------------------------------------------------------KFMKSMQTHKGSVF 468 (538)
Q Consensus 455 ------------------------------------------------------------------~~~~~~~~h~~~v~ 468 (538)
+....+.+|...|.
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~ 1007 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1007 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCC
T ss_pred EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceE
Confidence 12234456777887
Q ss_pred EEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 469 AVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 469 ~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++.| ++++|++++.||.|++||+.+++......+ ...+....+.+++.+++++.||.|++||+.
T Consensus 1008 ~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH-----QETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC-----SSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC-----CCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 7776 888999999999999999998876543222 222334445568889999999999999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=263.94 Aligned_cols=269 Identities=11% Similarity=0.134 Sum_probs=216.4
Q ss_pred ccceeeeecc----CcceeEEeecCCeEEEEEee--------------cCCCcEEEEEEc------CCEEEEEeCCCcEE
Q 009274 220 ADIDQARAAG----GVKDLVNGLSKGNVKFKDLQ--------------GHRDCVTGLAVG------GGFLFSSSFDKSIH 275 (538)
Q Consensus 220 ~~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~--------------~h~~~V~~l~~~------~~~l~s~s~dg~i~ 275 (538)
..+..+.+.+ +...++++..++.+.+|++. .|...|++++|+ +++|++|+.||.|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 3467777776 35567777777788888854 266889999998 24899999999999
Q ss_pred EEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEE
Q 009274 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355 (538)
Q Consensus 276 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 355 (538)
+||+.+++.+..+.+|...|.+++|+|+++.++++++.||.|++||+.+++....+.....+. ......+++++++++
T Consensus 99 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 99 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR--DEVLSADYDLLGEKI 176 (366)
T ss_dssp EECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS--SCEEEEEECTTSSEE
T ss_pred EEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc--CceeEEEECCCCCEE
Confidence 999999999999999999999999999777899999999999999998654333222112222 223356788899999
Q ss_pred EEeeCCCcEEEEECCCCceeEEec----------------------------CCCCCeEEEEEeCCEEEEEecCCcEEEE
Q 009274 356 YTGSGDRTIKAWSLLDGTLSCTMS----------------------------GHKSAVSTLAVCNGVLYSGSRDGTIRLW 407 (538)
Q Consensus 356 ~sg~~dg~i~iwd~~~~~~~~~~~----------------------------~h~~~v~~l~~~~~~l~s~s~dg~i~iw 407 (538)
++++.||.|++||+++++....+. +|...|.+++|+++++++++.|+.|++|
T Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCW 256 (366)
T ss_dssp EEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEE
T ss_pred EEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEE
Confidence 999999999999999876554433 3999999999998899999999999999
Q ss_pred ECCCCce--------------eEEEecCCCCceEEEEEEcCC--CCEEEEEeCCCcEEEEeCCc------ceeeeccc--
Q 009274 408 SLSDHSL--------------LTVLEEDSSGAVSSVLSLTAV--QHTLVVSHESGSIKVWRNDK------FMKSMQTH-- 463 (538)
Q Consensus 408 d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~------~~~~~~~h-- 463 (538)
|+++++. +..+..+.. .+.. ++++|+ +++|++|+.||.|++||... ....+..|
T Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 334 (366)
T 3k26_A 257 KPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWY-MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC 334 (366)
T ss_dssp EESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSC-CCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred eCCCccccccccccCCcchheeccccccCC-cEEE-EEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence 9988754 555555433 2332 578888 99999999999999999654 33467777
Q ss_pred cceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 464 KGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 464 ~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
...|.+++| ++++|++++.||.|++||+.
T Consensus 335 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 335 GAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 789999988 89999999999999999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-30 Score=251.62 Aligned_cols=271 Identities=17% Similarity=0.240 Sum_probs=231.4
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
..+..+.+++++..++++..++.+.+|+ +.+|.+.|++++|+ +++|++++.||.|++||+.+++.+..+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 4578888999999999999999999987 46799999999999 899999999999999999999999988
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCC-----CcEEEEEccCCCCCcceeeec--------ccCCceeeeEEEEeecCCEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSG-----GGIFVWSFSFPLGHEPLKKWN--------EEKDWRYSGIHALTTSGRYL 355 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l 355 (538)
. |...|.+++|+|++ .++++++.+ |.|++||+........+.... .+.........+++++++++
T Consensus 113 ~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp E-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEE
T ss_pred e-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEE
Confidence 8 88999999999955 577888888 999999998776543333221 22221244566888999999
Q ss_pred EEeeCCCcEEEEECCC-CceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 009274 356 YTGSGDRTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (538)
Q Consensus 356 ~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (538)
++++.||.|++||+++ ++.+..+..|...|.+++|+ +.+|++++.|+.|++||+++++.+..+... ..+. .+.+
T Consensus 191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~-~~~~ 267 (369)
T 3zwl_B 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD--CPLN-TAVI 267 (369)
T ss_dssp EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEE-EEEE
T ss_pred EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC--CCce-eEEe
Confidence 9999999999999998 78888999999999999998 559999999999999999999998888732 3333 4799
Q ss_pred cCCCCEEEEEeCCC--------------cEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC
Q 009274 433 TAVQHTLVVSHESG--------------SIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 433 ~~~~~~l~~~~~dg--------------~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
+|+++++++++.++ .+++||. .+....+.+|...|.++++ ++++|++++.||.|++|+++.+
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 99999999999988 8999995 4577788999999999988 8999999999999999999865
Q ss_pred e
Q 009274 495 E 495 (538)
Q Consensus 495 ~ 495 (538)
.
T Consensus 348 ~ 348 (369)
T 3zwl_B 348 Y 348 (369)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-31 Score=281.49 Aligned_cols=267 Identities=21% Similarity=0.348 Sum_probs=212.6
Q ss_pred CccceeeeeccCc-ceeEEeecCCeEEEEE--------------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC
Q 009274 219 GADIDQARAAGGV-KDLVNGLSKGNVKFKD--------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD 281 (538)
Q Consensus 219 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~--------------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~ 281 (538)
...|.++.+.+.+ ..+++++.++.+++|+ +.+|...|++++|+ +++|++|+.||+|++||+.+
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~ 461 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA 461 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 3456777776654 6788999999999996 45799999999999 89999999999999999999
Q ss_pred CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecC--CEEEEee
Q 009274 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG--RYLYTGS 359 (538)
Q Consensus 282 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sg~ 359 (538)
++....+.+|...|.+++|+|++. ++++|+.|++|++||...............+. ....+.++++++ ..+++|+
T Consensus 462 ~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 462 GVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHR--DWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCS--SCEEEEEECSCSSSCEEEEEE
T ss_pred CcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCC--CcEEEEEEeCCCCcceEEEEe
Confidence 999999999999999999999654 67999999999999975321111111111111 223456777776 5899999
Q ss_pred CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC
Q 009274 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH 437 (538)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (538)
.|++|++||+++++....+.+|.+.|++++|+ +++|++|+.|++|++||+++++.+..+..+ .. ...++|+|++.
T Consensus 539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~-v~~~~~sp~~~ 615 (694)
T 3dm0_A 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SV-IHALCFSPNRY 615 (694)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SC-EEEEEECSSSS
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--Cc-EEEEEEcCCCc
Confidence 99999999999999999999999999999999 569999999999999999999888776543 23 44479999998
Q ss_pred EEEEEeCCCcEEEEeCCc--ceeeeccc-------------------cceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 438 TLVVSHESGSIKVWRNDK--FMKSMQTH-------------------KGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 438 ~l~~~~~dg~i~iwd~~~--~~~~~~~h-------------------~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
++++++ ++.|++||... .+..+..+ ...+.+++| +|++|++|+.||.|++||+.
T Consensus 616 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 616 WLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 887766 55699999654 33333221 113566766 89999999999999999985
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=270.63 Aligned_cols=274 Identities=20% Similarity=0.268 Sum_probs=212.8
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
..+++++|+ +++|++++.||.|++||+.+++....+..| .+..+.+.+.++.++++|+.||.|++||+.++..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--- 131 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ--- 131 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE---
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce---
Confidence 344578888 899999999999999999887776666655 4455544444667889999999999999875432
Q ss_pred eeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEE
Q 009274 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd 408 (538)
......+. .....++++|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+ +++|++++.|+.|++||
T Consensus 132 ~~~~~~h~--~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 132 REIDQAHV--SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp EEETTSSS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eeeccccc--CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 22222222 223456788899999999999999999999999999999999999999999 55999999999999999
Q ss_pred CCCCceeEEEecCC--CCceEEE--------------------EEEcCCCCEEEEEeCCCcEEEEeCCc--ceeee-ccc
Q 009274 409 LSDHSLLTVLEEDS--SGAVSSV--------------------LSLTAVQHTLVVSHESGSIKVWRNDK--FMKSM-QTH 463 (538)
Q Consensus 409 ~~~~~~~~~~~~~~--~~~~~~~--------------------~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~-~~h 463 (538)
+++++.+..+..+. ...+..+ ++|+|+++++++|+.||.|++||.+. ....+ ..|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 289 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF 289 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTT
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccccc
Confidence 99999988887531 2222221 34578999999999999999999654 33333 458
Q ss_pred cceEEEEEe--CCC-EEEEEeCCCeEEEEecCCCee-EeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEcC
Q 009274 464 KGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGDEF-EEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 464 ~~~v~~~~~--~~~-~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
...|.++++ ++. +|++|+.||.|++||+.+++. ...... ++...+..++++++. |++++.||.|++|++.
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI----NEGTPINNVYFAAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE----STTSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc----cCCCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence 889999988 666 999999999999999988643 222221 134467777787664 7889999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=260.29 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=218.8
Q ss_pred EEEEeecCCCc--EEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEec-CCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 244 KFKDLQGHRDC--VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 244 ~i~~l~~h~~~--V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
++.+..+|.+. +.+++|+++.+++++.|+.|++||+.+++....+.. |...|.+++|+| ++.++++|+.||.|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEE
Confidence 34556677665 556788877788999999999999999999888876 889999999999 45688999999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEe--CCEEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (538)
|+.+++... .+..+. ..+.++.++++++++|+.||.|++||++ ....+..+.+|...|.+++|+ +.++++
T Consensus 162 d~~~~~~~~---~~~~~~----~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 162 DVESQTKLR---TMAGHQ----ARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp ETTTCCEEE---EECCCS----SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ECcCCeEEE---EecCCC----CceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 998764333 222222 2356777789999999999999999998 566788889999999999999 559999
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC-CEEEEEe--CCCcEEEEeCC--cceeeeccccceEEEEEe
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSH--ESGSIKVWRND--KFMKSMQTHKGSVFAVFL 472 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~ 472 (538)
|+.|+.|++||+++++.+..+..+. ..+.. ++|+|++ .++++++ .|+.|++||.. +....+. |...+.++.|
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~-~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~ 311 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHN-AAVKA-VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIW 311 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCS-SCCCE-EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred EeCCCeEEEccCCCCCccEEecCCc-ceEEE-EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEE
Confidence 9999999999999999888887653 33343 6899976 5666655 69999999954 3455554 5678888887
Q ss_pred --CCCEEEEE--eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEEEcC
Q 009274 473 --EGKWLFTG--GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 --~~~~l~sg--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~~~ 537 (538)
++++++++ +.||.|++||+.+++......... +...+....+.+++ .|++++.||.|++|++.
T Consensus 312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA--HDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC--CSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 88999984 489999999999876554432211 12233344444555 58889999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-30 Score=270.10 Aligned_cols=310 Identities=16% Similarity=0.160 Sum_probs=228.1
Q ss_pred CccceeeeeccCcc-eeEEeecCCeEEEEE---------eecCCC---cEEEEEEc---CCEEEEEeCCCcEEEEeCCCC
Q 009274 219 GADIDQARAAGGVK-DLVNGLSKGNVKFKD---------LQGHRD---CVTGLAVG---GGFLFSSSFDKSIHVWSLKDF 282 (538)
Q Consensus 219 ~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~---------l~~h~~---~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~ 282 (538)
...+..+.+.+++. .++++..++.+.+|+ +.+|.+ .|++++|+ ++++++++.||.|++||+.++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 44577888888887 788999999998887 457999 99999998 579999999999999999999
Q ss_pred ceEEEE-e---cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEe
Q 009274 283 SHVHTF-K---GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTG 358 (538)
Q Consensus 283 ~~~~~~-~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 358 (538)
+.+..+ . .|...|.+++|+ ++.++++++.||.|++||+.+++....+............ ...+ +++++++++
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~~ 315 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV-GVVA-TGNGRIISL 315 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE-EEEE-EETTEEEEE
T ss_pred CEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee-EEEe-CCCCeEEEE
Confidence 999999 6 899999999998 6678899999999999999876443333222111111111 2233 388899999
Q ss_pred eCCCcEEEEECCCCceeEEecCCCCCeEEEEE---------------------------------e-CCEEEEEecCC--
Q 009274 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV---------------------------------C-NGVLYSGSRDG-- 402 (538)
Q Consensus 359 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---------------------------------~-~~~l~s~s~dg-- 402 (538)
+.||.|++||+.+++.+..+.+|...|.+++| . ++.+++++.|+
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL 395 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEE
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCE
Confidence 99999999999988887777766655555544 2 23444444444
Q ss_pred ------------------------------------------------------------------------cEEEEECC
Q 009274 403 ------------------------------------------------------------------------TIRLWSLS 410 (538)
Q Consensus 403 ------------------------------------------------------------------------~i~iwd~~ 410 (538)
.|++||+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~ 475 (615)
T 1pgu_A 396 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 475 (615)
T ss_dssp EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred EEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECC
Confidence 44444444
Q ss_pred CCcee-EEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeecc-ccceEEEEEe------------CC
Q 009274 411 DHSLL-TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQT-HKGSVFAVFL------------EG 474 (538)
Q Consensus 411 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~-h~~~v~~~~~------------~~ 474 (538)
+++.. ..+. .+...+. .++|+|++++|++++.||.|++||.. +.+..+.+ |...|.+++| ++
T Consensus 476 ~~~~~~~~~~-~~~~~v~-~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 476 DLEVSFDLKT-PLRAKPS-YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp EEEEEEECSS-CCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred CccccccccC-CccCceE-EEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC
Confidence 33322 1111 2233333 47999999999999999999999964 45666777 9999999886 78
Q ss_pred CEEEEEeCCCeEEEEecCCC-eeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcCC
Q 009274 475 KWLFTGGWDKTVSVQELAGD-EFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~~ 538 (538)
++|++++.||.|++||+.++ +....... +...+....+.+++.|++++.||.|++|++++
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALNA----HKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETTS----STTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhhc----CccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 99999999999999999986 43332221 12334444555677788999999999999863
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=261.39 Aligned_cols=241 Identities=17% Similarity=0.228 Sum_probs=189.2
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCcCeEEEEEecC-CCCEEEEEcCCCcEEEEE
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd 321 (538)
.+.+|.++|++++|+ +++|++|+.|++|++||+.+++ .+..+++|.+.|.+++|+++ ++.+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 367999999999998 8999999999999999998775 46789999999999999864 467889999999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeec--CCEEEEeeCCCcEEEEECCCCce---eEEecCCCCCeEEEEEeC----
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTL---SCTMSGHKSAVSTLAVCN---- 392 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~---- 392 (538)
++++... ....+..+.. ....++++|+ +.+|++|+.|++|++||++++.. ...+.+|...|.+++|++
T Consensus 88 ~~~~~~~-~~~~~~~h~~--~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENGTWE-KSHEHAGHDS--SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSSCCC-EEEEECCCSS--CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred CCCCcce-EEEEccCCCC--ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9865322 2222222222 2234578887 67999999999999999987632 345678999999999983
Q ss_pred ---------------CEEEEEecCCcEEEEECCCC---ceeEEEecCCCCceEEEEEEcCCC----CEEEEEeCCCcEEE
Q 009274 393 ---------------GVLYSGSRDGTIRLWSLSDH---SLLTVLEEDSSGAVSSVLSLTAVQ----HTLVVSHESGSIKV 450 (538)
Q Consensus 393 ---------------~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i 450 (538)
.+|++|+.|++|++||++.. +....+..| ...+.. ++|+|++ ++|++++.|++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~-v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRD-VAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEE-EECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEE-EEecCCCCCCCceEEEEcCCCeEEE
Confidence 47999999999999999765 344555554 444444 6999986 89999999999999
Q ss_pred EeCCc------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 451 WRNDK------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 451 wd~~~------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
||... ....+..|...|.+++| ++++|++++.||+|++|+..
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99654 23456678899999987 89999999999999999976
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=255.30 Aligned_cols=271 Identities=15% Similarity=0.109 Sum_probs=220.6
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE-----------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 286 (538)
..+..+.+.+++..++++..++.+.+|+ +.+|...|++++|+ +++|++++.||.|++||+.+++...
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence 4477788888888888888888887776 45799999999999 8999999999999999998887655
Q ss_pred EE--ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcE
Q 009274 287 TF--KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (538)
Q Consensus 287 ~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 364 (538)
.+ ..|...|.+++|+|+ +.++++++.|+.|++||+................. ......+++++++++++|+.||.|
T Consensus 89 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-STVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp EEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-SCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC-CCeeEEEEcCCCCEEEEEcCCCCE
Confidence 44 578999999999985 46889999999999999987654322333322212 223456788899999999999999
Q ss_pred EEEEC------------------CCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 009274 365 KAWSL------------------LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424 (538)
Q Consensus 365 ~iwd~------------------~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 424 (538)
++||+ .+++.+..+.+|...|.+++|+ +++|++++.|+.|++||+++++.+..+..+. .
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~ 245 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET-L 245 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS-C
T ss_pred EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC-C
Confidence 99995 4678888898999999999998 5599999999999999999999998888663 3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ce----------------------------------------eee-c
Q 009274 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FM----------------------------------------KSM-Q 461 (538)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~----------------------------------------~~~-~ 461 (538)
.+. .++|+|++.++++| .|+.|++||... .. ..+ .
T Consensus 246 ~v~-~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
T 1k8k_C 246 PLL-AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 323 (372)
T ss_dssp CEE-EEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred CeE-EEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence 334 37999999988877 999999999544 10 223 4
Q ss_pred cccceEEEEEe---CC---CEEEEEeCCCeEEEEecCCCe
Q 009274 462 THKGSVFAVFL---EG---KWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 462 ~h~~~v~~~~~---~~---~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+|...|.++++ +| .+|++|+.||.|++||+.+.+
T Consensus 324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 89999999974 56 899999999999999997643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-30 Score=258.79 Aligned_cols=278 Identities=14% Similarity=0.193 Sum_probs=219.5
Q ss_pred EEEeecCCCcEEEEEEc--CC-EEEEEeCCCcEEEEeC----CCCc------eEEEEec----------CCcCeEEEEEe
Q 009274 245 FKDLQGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSL----KDFS------HVHTFKG----------HDHKVMAVVYV 301 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~-~l~s~s~dg~i~iwd~----~~~~------~~~~~~~----------h~~~v~~l~~~ 301 (538)
......|.++|++++|+ ++ +|++|+.||.|++||+ .+++ ....+.. |...|.+++|+
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 33345677999999999 77 9999999999999999 8888 5556655 68899999999
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCC
Q 009274 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH 381 (538)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 381 (538)
|+ +.++++++.||.|++||.. + .....+..+.. .....++++++++|++++.|+.|++||+.+++.+..+..+
T Consensus 118 ~~-~~~l~~~~~dg~i~i~~~~-~---~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 118 HD-GNSIVTGVENGELRLWNKT-G---ALLNVLNFHRA--PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp TT-SSEEEEEETTSCEEEEETT-S---CEEEEECCCCS--CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred CC-CCEEEEEeCCCeEEEEeCC-C---CeeeeccCCCc--cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 94 5688999999999999932 2 23333333322 2335578889999999999999999999999999998888
Q ss_pred CCC---------------eEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC
Q 009274 382 KSA---------------VSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (538)
Q Consensus 382 ~~~---------------v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 445 (538)
... +.+++|+ ++.+++++.|+.|++||+++++.+..+..+. ..+. .++++|++++|++++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH-GPIS-VLEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCS-SCEE-EEEEETTTTEEEEEETT
T ss_pred ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCC-CceE-EEEECCCCCEEEEEcCC
Confidence 776 9999999 7799999999999999999999888887653 3444 47999999999999999
Q ss_pred CcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC
Q 009274 446 GSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG 520 (538)
Q Consensus 446 g~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 520 (538)
|.|++||.. +....+..|...|.++.+ ++ ++++++.||.|++||+.+++....... +...+..+.+ +++
T Consensus 269 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----DGVPIFAGRISQDG 342 (425)
T ss_dssp SCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----TTCCEEEEEECTTS
T ss_pred CEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----CCccEEEEEEcCCC
Confidence 999999955 467778889999999987 56 999999999999999998886655543 2234555555 444
Q ss_pred -EEEEEECCCeEEEEEcC
Q 009274 521 -KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 521 -~l~sg~~dg~v~vw~~~ 537 (538)
.|++++.||.|++|++.
T Consensus 343 ~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp SEEEEEETTSCEEEEECH
T ss_pred CEEEEEECCCeEEEEECC
Confidence 58889999999999974
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-29 Score=246.77 Aligned_cols=267 Identities=20% Similarity=0.346 Sum_probs=215.6
Q ss_pred ccceeeeeccC-cceeEEeecCCeEEEEEe--------------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC
Q 009274 220 ADIDQARAAGG-VKDLVNGLSKGNVKFKDL--------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF 282 (538)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l--------------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~ 282 (538)
..|.++.+.++ +..+++++.|+.+++|++ .+|.+.|++++|+ +++|++++.|+.|++|+....
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~ 118 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence 45888888876 568889999999999974 5799999999999 899999999999999999999
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecC--CEEEEeeC
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG--RYLYTGSG 360 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sg~~ 360 (538)
........+...+....+++.+ .++++++.|+.+++||....... ......+. ......++++++ .++++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~~~~s~~~ 193 (340)
T 4aow_A 119 TTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY--TVQDESHS--EWVSCVRFSPNSSNPIIVSCGW 193 (340)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE--EECSSSCS--SCEEEEEECSCSSSCEEEEEET
T ss_pred ceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE--EEEecccc--CcccceEEccCCCCcEEEEEcC
Confidence 9999999999999999998754 56799999999999998643211 11111111 222344666654 48899999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 009274 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
|+.|++||+++++.+..+.+|.+.|++++|+ +++|++|+.|+.|++||+++.+.+..+..+. . ...++++|++.+
T Consensus 194 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--~-v~~~~~~~~~~~ 270 (340)
T 4aow_A 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD--I-INALCFSPNRYW 270 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS--C-EEEEEECSSSSE
T ss_pred CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc--e-EEeeecCCCCce
Confidence 9999999999999999999999999999999 5599999999999999999999988887643 2 344689998765
Q ss_pred EEEEeCCCcEEEEeCCc--cee---------eeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 439 LVVSHESGSIKVWRNDK--FMK---------SMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 439 l~~~~~dg~i~iwd~~~--~~~---------~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+ +++.|+.|++||... ... ....|...|++++| ++++|++|+.||.|++||++++.
T Consensus 271 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 271 L-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp E-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred e-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 4 566799999999653 222 23468889999987 89999999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=275.16 Aligned_cols=228 Identities=10% Similarity=0.066 Sum_probs=172.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceE----EEEecCCcCeEEEEEecC-----CCCEEEEEcCCCcEEEEEccCCCCCc---
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHV----HTFKGHDHKVMAVVYVDE-----DQPLCISGDSGGGIFVWSFSFPLGHE--- 329 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~--- 329 (538)
++.+++++.|++|+|||+.+++.. ..+..|.+.|.+++|+|+ +..+|++++.||+|++||+..+....
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 456777889999999999877642 456778899999999996 24699999999999999998664321
Q ss_pred -----ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc-eeEEecCCCCCeEEEE--Ee--C-CEEEEE
Q 009274 330 -----PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT-LSCTMSGHKSAVSTLA--VC--N-GVLYSG 398 (538)
Q Consensus 330 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~--~~--~-~~l~s~ 398 (538)
....+..+.. ....++++++ ..|++|+.||+|++||+++++ +...+.+|...|++++ |+ + .+|++|
T Consensus 253 ~~~~~p~~~l~~h~~--~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 253 KMCEKPSLTLSLADS--LITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp ECCCSCSEEECCTTT--CEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred eeecCceEEEEcCCC--CEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 1112222221 1223455543 589999999999999999764 4566889999999994 55 3 589999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCC-ceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--C
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSG-AVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--E 473 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~ 473 (538)
+.|++|++||+++++....+..+... .+.. ++|+|+++.+++++.|++|++||.+. ....+.+|.+.|++++| +
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~-v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVP-VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCC-EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccc-eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 99999999999998877666655332 2323 68999999999999999999999654 45778899999999987 8
Q ss_pred CCEEEEEeCCCeEEEEecCC
Q 009274 474 GKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 474 ~~~l~sgs~dg~v~iwd~~~ 493 (538)
+++|++|+.||+|++||+..
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCBCEEEETTTEEECCBSCS
T ss_pred CCeEEEEECCCEEEEEechH
Confidence 99999999999999999743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=282.41 Aligned_cols=281 Identities=17% Similarity=0.274 Sum_probs=233.5
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
...+.+|.+.|++++|+ +++|++++.||.|++||+.+++.+..+.+|...|.+++|+|+ +.++++++.||.|++||+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEET
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEEC
Confidence 45689999999999999 999999999999999999999999999999999999999995 457899999999999999
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEeC---CEEEEE
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVCN---GVLYSG 398 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~---~~l~s~ 398 (538)
.++.....+ ..+. ......+++|+++++++++.||.|++||+.++ .....+.+|...|.+++|++ +.++++
T Consensus 85 ~~~~~~~~~---~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 85 NTGEKVVDF---EAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp TTCCEEEEE---ECCS--SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEE---ecCC--CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 876543332 2222 22345688999999999999999999999887 67778889999999999984 489999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC--CCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-- 472 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~-- 472 (538)
+.||.|++||+++++....+..++...+.. ++++| ++.++++++.||.|++||.. +....+.+|...|.++.+
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCE-EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEE-EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 999999999999998888887765444444 68888 99999999999999999954 467788889999999887
Q ss_pred CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE-EeCCE--EEEEECCCeEEEEEcC
Q 009274 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL-YWQGK--LFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--l~sg~~dg~v~vw~~~ 537 (538)
++++|++++.||.|++||+.+++........ ...+..+. .+++. +++++.|+.+.+|++.
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-----LERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCS-----SSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecC-----CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 8899999999999999999988765554432 22444554 45654 5677778889999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-30 Score=279.23 Aligned_cols=189 Identities=12% Similarity=0.045 Sum_probs=155.7
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEe--------ecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL--------QGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGH 291 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l--------~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 291 (538)
.+.++.+++++..++++..++.+++|+. ..|..+|++++|+ +++|++++.|++|++||+.+++.+..+. |
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~ 97 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-V 97 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-C
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-C
Confidence 4788999999999999999999999963 2578899999999 8899999999999999999999998886 7
Q ss_pred CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee---------eecccCCceeeeEEEEeec-CCEEEEeeCC
Q 009274 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK---------KWNEEKDWRYSGIHALTTS-GRYLYTGSGD 361 (538)
Q Consensus 292 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~l~sg~~d 361 (538)
...|.+++|+|+ +.++++|+.||+|++||+.+.... ... ....+. .....++++|+ +..+++|+.|
T Consensus 98 ~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~--~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 98 PGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARL--SPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp SSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCC--CCCCEEEEETTEEEEEEEECSS
T ss_pred CCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCC--CCeEEEEEccCCCCEEEEEeCC
Confidence 789999999985 557899999999999999865431 110 011111 22334577774 4689999999
Q ss_pred CcEEEEECCCCceeEEecCC------------------CCCeEEEEEe--CCEEEEEecCCcEEEEECCCCcee
Q 009274 362 RTIKAWSLLDGTLSCTMSGH------------------KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL 415 (538)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h------------------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 415 (538)
|.| +||+++++++..+..| ...|++++|+ +.+|++|+.|++|++||+++++++
T Consensus 174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999 9999999988888765 5789999999 559999999999999999776543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-30 Score=250.63 Aligned_cols=268 Identities=16% Similarity=0.136 Sum_probs=215.0
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc---eEEEEecCCcCeEEEEEecCCCC-EEEEEcCCCcEEEEE
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---HVHTFKGHDHKVMAVVYVDEDQP-LCISGDSGGGIFVWS 321 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~dg~i~vwd 321 (538)
..+|.+.|++++|+ +++|++++.||.|++||+.+++ ....+..|...|.+++|+|+ +. ++++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEEE
Confidence 46899999999999 8999999999999999998877 35556689999999999996 56 789999999999999
Q ss_pred c-cCCCCCcceeeecc--cCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC---------CceeEEecCCCCCeEEEE
Q 009274 322 F-SFPLGHEPLKKWNE--EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD---------GTLSCTMSGHKSAVSTLA 389 (538)
Q Consensus 322 ~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~ 389 (538)
+ .+... ..... +. ......++++ ++.+++++.|+.|++||+++ ++++..+. |...|.+++
T Consensus 86 ~~~~~~~----~~~~~~~~~--~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 86 LIGSPSF----QALTNNEAN--LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp SSSSSSE----EECBSCCCC--SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred eccCCce----EeccccCCC--CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence 9 76532 22222 22 2223456777 89999999999999999988 77777776 899999999
Q ss_pred EeCCEEEEEecCCcEEEEECCC-Cce-eEEEecCCCCceEEEEEEcC-CCCEEEEEeCCCcEEEEeC--C------ccee
Q 009274 390 VCNGVLYSGSRDGTIRLWSLSD-HSL-LTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRN--D------KFMK 458 (538)
Q Consensus 390 ~~~~~l~s~s~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~--~------~~~~ 458 (538)
|+++.+++++.|+.|++||+++ +.. .......+...+. .++++| +++++++++.||.|++|+. . +...
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR-DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE-EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCcee-EEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9977799999999999999998 654 3333333344444 479999 9999999999999999984 3 5566
Q ss_pred eeccccc---------eEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEE
Q 009274 459 SMQTHKG---------SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGC 526 (538)
Q Consensus 459 ~~~~h~~---------~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~ 526 (538)
.+..|.. .|.++++ ++++|++++.||.|++||+.+++........ +...+..+. +++ .|++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~~~-~~~~~l~s~s 311 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF----NEDSVVKIA-CSDNILCLAT 311 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC----SSSEEEEEE-ECSSEEEEEE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc----cCCCceEec-CCCCeEEEEe
Confidence 7777765 8999887 8999999999999999999998865543321 144566666 655 588899
Q ss_pred CCCe
Q 009274 527 ADRT 530 (538)
Q Consensus 527 ~dg~ 530 (538)
.||.
T Consensus 312 ~Dg~ 315 (342)
T 1yfq_A 312 SDDT 315 (342)
T ss_dssp ECTH
T ss_pred cCCc
Confidence 9998
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-30 Score=255.37 Aligned_cols=271 Identities=17% Similarity=0.199 Sum_probs=220.1
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe---------------ecCCCcEEEEEEc-C--------CEEEEEeCCCcEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------------QGHRDCVTGLAVG-G--------GFLFSSSFDKSIH 275 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------------~~h~~~V~~l~~~-~--------~~l~s~s~dg~i~ 275 (538)
..+..+.+.+ ..++++..++.+++|++ .+|..+|++++|+ . ++|++++.||.|+
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred cCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 3466777766 78888899999988874 4688999999998 4 7999999999999
Q ss_pred EEeCCCCce-----EEEEecC-----CcCeEEEEEe----cCCCCEEEEEcCCCcEEEEEccC------CCCCccee--e
Q 009274 276 VWSLKDFSH-----VHTFKGH-----DHKVMAVVYV----DEDQPLCISGDSGGGIFVWSFSF------PLGHEPLK--K 333 (538)
Q Consensus 276 iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~--~ 333 (538)
+||+.+++. ...+..| ...|.+++|+ |++...+++++.||.|++||+.+ ........ .
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 174 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence 999998887 8889988 5999999999 75543289999999999999987 44433000 1
Q ss_pred ecc-----cCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC---C---CCCeEEEEEe--CCEEEEEec
Q 009274 334 WNE-----EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG---H---KSAVSTLAVC--NGVLYSGSR 400 (538)
Q Consensus 334 ~~~-----~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h---~~~v~~l~~~--~~~l~s~s~ 400 (538)
+.. ..........++++++ ++++++.||.|++||+++++.+..+.. | ...|.+++|+ +.+|++++.
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~ 253 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 253 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence 111 1111233456888999 999999999999999999999999998 9 9999999998 569999999
Q ss_pred C---CcEEEEECCCCceeEEEecC------------CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeec--
Q 009274 401 D---GTIRLWSLSDHSLLTVLEED------------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQ-- 461 (538)
Q Consensus 401 d---g~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~-- 461 (538)
| +.|++||+++++.+..+... +...+.. ++|+|++++|++++.||.|++||.. +.+..+.
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS-LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEE-EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecc
Confidence 9 99999999999998888761 2444444 7999999999999999999999964 4667777
Q ss_pred ----cc---------------cceEEEEEe--CC----------CEEEEEeCCCeEEEEecCCC
Q 009274 462 ----TH---------------KGSVFAVFL--EG----------KWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 462 ----~h---------------~~~v~~~~~--~~----------~~l~sgs~dg~v~iwd~~~~ 494 (538)
.| ...|.+++| ++ ++|++++.||.|++||+.++
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 77 899999987 66 69999999999999999775
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-29 Score=252.48 Aligned_cols=265 Identities=17% Similarity=0.318 Sum_probs=213.3
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEE-----------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceE
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV 285 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 285 (538)
+...+.+..+.+ ..++.+. ++.+++|+ +.+|.+.|++++|+ |++|++|+.||+|++||+++++.+
T Consensus 105 d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 105 DYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp CTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 334455555543 3455554 67777776 34788899999999 899999999999999999999999
Q ss_pred EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEE
Q 009274 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (538)
Q Consensus 286 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 365 (538)
..+.+|...+.++.+. +.++++|+.|+.+++||...... .+..+..+.. ......++++++++++++.|+.++
T Consensus 183 ~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~--~~~~~~~h~~--~~~~~~~~~~g~~l~s~~~D~~v~ 255 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH--HVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVN 255 (420)
T ss_dssp EEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC--EEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccce--eeEEeccccc--ceeeeeecCCCCeeeeeeccccce
Confidence 9999999999999884 46899999999999999875432 2233333332 233567888999999999999999
Q ss_pred EEECCCCc----eeEEecCCCCCeEEEEEe---CCEEEEE--ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 009274 366 AWSLLDGT----LSCTMSGHKSAVSTLAVC---NGVLYSG--SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (538)
Q Consensus 366 iwd~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (538)
+||..+++ .+.....|...|.+++|+ .++++++ +.|++|++||+++++....+..+. .+.. +.+++++
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~-~~~~~~~ 332 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCS-ILWSPHY 332 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEE-EEEETTT
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceee-eeecCCC
Confidence 99998765 355677899999999998 3466654 579999999999999988887653 2333 6889999
Q ss_pred CEEEEEe--CCCcEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 437 HTLVVSH--ESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 437 ~~l~~~~--~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+.+++++ .|+.|++||. .+++..+.+|.+.|++++| +|++|+||+.|++|++||+.+..
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9888765 6899999995 4578889999999999987 89999999999999999997654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-30 Score=256.00 Aligned_cols=281 Identities=17% Similarity=0.228 Sum_probs=212.9
Q ss_pred EEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEe-------------cCCcCeEEEEEecCCCCEEE
Q 009274 246 KDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFK-------------GHDHKVMAVVYVDEDQPLCI 309 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~l~~~~~~~~~l~ 309 (538)
..+.+|.+.|++++|+ +++|++|+.||.|++||+.+++....+. +|...|.+++|+|+++.+++
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 4578899999999997 7999999999999999999876655443 59999999999997888899
Q ss_pred EEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee---cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeE
Q 009274 310 SGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT---SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386 (538)
Q Consensus 310 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 386 (538)
+++.||.|++||+.++....... ... ......+.+ ++.++++++.|+.|++||+++++.+..+.+|...|.
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFN---FEE---TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE---CSS---CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred EEeCCCeEEEeeCCCCccceecc---CCC---ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 99999999999998754332222 111 122335555 445999999999999999999999999999999999
Q ss_pred EEEEe--CC-EEEEEecCCcEEEEECCCCc-eeEEEe--------------cCCCCceEEEEEEcCCCCEEEEEeCCCcE
Q 009274 387 TLAVC--NG-VLYSGSRDGTIRLWSLSDHS-LLTVLE--------------EDSSGAVSSVLSLTAVQHTLVVSHESGSI 448 (538)
Q Consensus 387 ~l~~~--~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 448 (538)
+++|+ +. ++++++.||.|++||++++. ....+. ..+...+. .++|+|++++|++++.||.|
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN-GLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE-EEEECTTSSEEEEEETTSCE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee-EEEEcCCCCEEEEecCCCeE
Confidence 99999 33 69999999999999998876 333331 12233444 47999999999999999999
Q ss_pred EEEeCCcce--eeeccc------cceEEEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e
Q 009274 449 KVWRNDKFM--KSMQTH------KGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W 518 (538)
Q Consensus 449 ~iwd~~~~~--~~~~~h------~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 518 (538)
++||..... ..+..+ ......... .+..+++++.|+.|++||+.+++....... +...+..+.+ +
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~s~ 344 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-----HYKTVDCCVFQS 344 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-----CSSCEEEEEEET
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-----CCCeEEEEEEcC
Confidence 999965422 222211 111122222 566777888899999999999887665542 2334555544 4
Q ss_pred CC-EEEEEECCCeEEEEEcCC
Q 009274 519 QG-KLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 519 ~~-~l~sg~~dg~v~vw~~~~ 538 (538)
++ .|++|+.||.|++|++.+
T Consensus 345 ~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 345 NFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp TTTEEEEEETTSCEEEEEECC
T ss_pred CCCEEEEECCCCeEEEEeCCC
Confidence 54 588999999999999863
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-30 Score=252.97 Aligned_cols=273 Identities=16% Similarity=0.262 Sum_probs=213.4
Q ss_pred ccceeeeeccCcceeE-Eeec---CCeEEEEEee----------cCCCcEEEEEEc-C----CEEEEEeCCCcEEEEeCC
Q 009274 220 ADIDQARAAGGVKDLV-NGLS---KGNVKFKDLQ----------GHRDCVTGLAVG-G----GFLFSSSFDKSIHVWSLK 280 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~l~----------~h~~~V~~l~~~-~----~~l~s~s~dg~i~iwd~~ 280 (538)
..+..+.+.+++..++ ++.. ++.+.+|++. +|.++|++++|+ . ++|++|+.||.|++||+.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 3477788888776555 4444 7888888753 688999999998 3 899999999999999999
Q ss_pred CCc-eEEEEecCCcCeEEEEEec-----CCCCEEEEEcCCCcEEEEEccCCC-CCcceeeecccCCceeeeEE---EEee
Q 009274 281 DFS-HVHTFKGHDHKVMAVVYVD-----EDQPLCISGDSGGGIFVWSFSFPL-GHEPLKKWNEEKDWRYSGIH---ALTT 350 (538)
Q Consensus 281 ~~~-~~~~~~~h~~~v~~l~~~~-----~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~ 350 (538)
+++ .+..+.+|...|.++.|.+ .++.++++++.||.|++||+.++. ....+.....+.......+. ++++
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence 988 8899999999999997753 356688999999999999998765 22222222222111121111 1568
Q ss_pred cCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC-----CEEEEEecCCcEEEEECCCCceeEEEe-----c
Q 009274 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN-----GVLYSGSRDGTIRLWSLSDHSLLTVLE-----E 420 (538)
Q Consensus 351 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~ 420 (538)
+++++++++.||.|++||+++++.... ..|...|.+++|++ +++++++.||.|++||+++++....+. .
T Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 179 EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred CCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 999999999999999999999887554 56889999999984 599999999999999998876654443 3
Q ss_pred CCCCceEEEEEEcCCCC-EEEEEeCCCcEEEEeCC---------------------cceeeeccccceEEEEEe--CCCE
Q 009274 421 DSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRND---------------------KFMKSMQTHKGSVFAVFL--EGKW 476 (538)
Q Consensus 421 ~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~---------------------~~~~~~~~h~~~v~~~~~--~~~~ 476 (538)
+ ...+.. +.|+|+++ ++++++.||.|++||.. +.+..+.+|...|.+++| ++++
T Consensus 258 ~-~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 335 (357)
T 3i2n_A 258 H-KSTVWQ-VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335 (357)
T ss_dssp C-SSCEEE-EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred C-cCCEEE-EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence 3 444444 69999998 89999999999999954 346678889999999987 7888
Q ss_pred EE-EEeCCCeEEEEecCCCe
Q 009274 477 LF-TGGWDKTVSVQELAGDE 495 (538)
Q Consensus 477 l~-sgs~dg~v~iwd~~~~~ 495 (538)
|+ +++.||.|++||+.+.+
T Consensus 336 l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEETTSEEEEEEECC--
T ss_pred EEEEecCCCcEEEEECCCcc
Confidence 87 89999999999998754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-29 Score=278.05 Aligned_cols=312 Identities=15% Similarity=0.165 Sum_probs=225.2
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEe--------------------ecCCCcEEEEEEc---CCEEEEEeCCCcEEEE
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL--------------------QGHRDCVTGLAVG---GGFLFSSSFDKSIHVW 277 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l--------------------~~h~~~V~~l~~~---~~~l~s~s~dg~i~iw 277 (538)
.+..+.+.+++..++++..++.+++|++ .+|.++|++++|+ +..+++|+.||.| +|
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lW 178 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TY 178 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EE
Confidence 4778889999999999999999999974 4588999999999 3689999999999 99
Q ss_pred eCCCCceEEEEecC------------------CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc---------
Q 009274 278 SLKDFSHVHTFKGH------------------DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP--------- 330 (538)
Q Consensus 278 d~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------- 330 (538)
|+.+++.+..+..| ...|.+++|+|+ +.++++|+.||+|++||+.+++....
T Consensus 179 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 179 SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp ETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred ECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 99999999888766 578999999996 56889999999999999976542110
Q ss_pred ----------------eee--ecc--cCC--ce-------------eee-------------------------------
Q 009274 331 ----------------LKK--WNE--EKD--WR-------------YSG------------------------------- 344 (538)
Q Consensus 331 ----------------~~~--~~~--~~~--~~-------------~~~------------------------------- 344 (538)
+.. +.. ... .. ...
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE
Confidence 000 000 000 00 000
Q ss_pred -------EEEE--e----------ecCCEEEEeeCCCcEEEEECCCCceeEE-------ecCCCCCeEEEEE--------
Q 009274 345 -------IHAL--T----------TSGRYLYTGSGDRTIKAWSLLDGTLSCT-------MSGHKSAVSTLAV-------- 390 (538)
Q Consensus 345 -------~~~~--~----------~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~l~~-------- 390 (538)
+..+ . .++..+++++.||.|++||+.++..... +..|...|+++++
T Consensus 338 ~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w 417 (902)
T 2oaj_A 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLW 417 (902)
T ss_dssp CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHH
T ss_pred ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHH
Confidence 0000 0 1223677778889999999877643322 2334455555544
Q ss_pred --------------------------e--CCEEEEEecCCcEEEEECCCCcee----EEEec------CCCCceEEEEEE
Q 009274 391 --------------------------C--NGVLYSGSRDGTIRLWSLSDHSLL----TVLEE------DSSGAVSSVLSL 432 (538)
Q Consensus 391 --------------------------~--~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~------~~~~~~~~~~~~ 432 (538)
+ +++|++|+.|++|++||+.++... ..... .+...+.+ ++|
T Consensus 418 ~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s-vaf 496 (902)
T 2oaj_A 418 LGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK-ISF 496 (902)
T ss_dssp HHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE-EEE
T ss_pred HHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE-EEe
Confidence 4 448999999999999999887531 11110 23344444 799
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCc-----------------------------------------------ceeeeccccc
Q 009274 433 TAVQHTLVVSHESGSIKVWRNDK-----------------------------------------------FMKSMQTHKG 465 (538)
Q Consensus 433 ~~~~~~l~~~~~dg~i~iwd~~~-----------------------------------------------~~~~~~~h~~ 465 (538)
+|++++|++|+.||+|++||... ++..+.+|.+
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 99999999999999999999432 2566788999
Q ss_pred eEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcc-cCCCceEEEEE------eCC----EEEEEECCCeEE
Q 009274 466 SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI-PCGSVITALLY------WQG----KLFVGCADRTVK 532 (538)
Q Consensus 466 ~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~----~l~sg~~dg~v~ 532 (538)
.|++++| +| +|++|+.|++|++||+++............. .+...+.++.| +|+ .|++|+.||+|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 9999987 88 9999999999999999888764321111110 13444555554 453 589999999999
Q ss_pred EEEc
Q 009274 533 VYYY 536 (538)
Q Consensus 533 vw~~ 536 (538)
+|++
T Consensus 656 ~wd~ 659 (902)
T 2oaj_A 656 TYKI 659 (902)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-30 Score=260.81 Aligned_cols=244 Identities=14% Similarity=0.197 Sum_probs=190.9
Q ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc-----------eEEEEecCC------------cCeEEEEEecCCC
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-----------HVHTFKGHD------------HKVMAVVYVDEDQ 305 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~~~~~ 305 (538)
|.+.|++++|+ +++|++|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999 8999999999999999998877 578899998 8899999999764
Q ss_pred -CEEEEEcCCCcEEEEEccCCCCCcc------------------------------------eeeecccCCceeeeEEEE
Q 009274 306 -PLCISGDSGGGIFVWSFSFPLGHEP------------------------------------LKKWNEEKDWRYSGIHAL 348 (538)
Q Consensus 306 -~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 348 (538)
.++++++.|++|++||+.+...... ...+...+. .....+++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~ 185 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT-YHINSISI 185 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-SCCCEEEE
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-cceEEEEE
Confidence 6889999999999999875321100 001111111 22335688
Q ss_pred eecCCEEEEeeCCCcEEEEECCC-CceeE-------EecCCCCCeEEEEEe--C-CEEEEEecCCcEEEEECCCCce---
Q 009274 349 TTSGRYLYTGSGDRTIKAWSLLD-GTLSC-------TMSGHKSAVSTLAVC--N-GVLYSGSRDGTIRLWSLSDHSL--- 414 (538)
Q Consensus 349 ~~~~~~l~sg~~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~l~~~--~-~~l~s~s~dg~i~iwd~~~~~~--- 414 (538)
++++++|++| .|+.|++||+++ ++... .+.+|...|++++|+ + .+|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 8999999998 799999999984 44444 356899999999999 3 6999999999999999999886
Q ss_pred -eEEEecCCC-----------CceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccceE------------
Q 009274 415 -LTVLEEDSS-----------GAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSV------------ 467 (538)
Q Consensus 415 -~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v------------ 467 (538)
...+..+.. ..+. .++|+|++++|++++. +.|++||.+ +++..+.+|...+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSIS-DVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEE-EEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeeEeccCCCccccccccccCceEE-EEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 677766532 1344 4799999999999999 999999964 4677777776422
Q ss_pred -----EEEEeCCCEEEEEeCCCeEEEEecCCCeeEe
Q 009274 468 -----FAVFLEGKWLFTGGWDKTVSVQELAGDEFEE 498 (538)
Q Consensus 468 -----~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~ 498 (538)
.++++++++|++|+.||.|++||+.+++...
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 2444599999999999999999999887654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-29 Score=254.04 Aligned_cols=259 Identities=17% Similarity=0.291 Sum_probs=211.7
Q ss_pred cceeEEeecCCeEEEEEee----------cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEE
Q 009274 231 VKDLVNGLSKGNVKFKDLQ----------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298 (538)
Q Consensus 231 ~~~~~~~~~~~~~~i~~l~----------~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 298 (538)
+..++++..++.+.+|++. .|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence 3557777788888888742 388999999998 8999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe
Q 009274 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378 (538)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 378 (538)
+|. +.++++++.||.|++||++.... .......+.. .....+++++++++++|+.|+.|++||+++++.+..+
T Consensus 183 ~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 255 (401)
T 4aez_A 183 SWN---RHVLSSGSRSGAIHHHDVRIANH--QIGTLQGHSS--EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255 (401)
T ss_dssp EEE---TTEEEEEETTSEEEEEETTSSSC--EEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred EEC---CCEEEEEcCCCCEEEEecccCcc--eeeEEcCCCC--CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence 994 45899999999999999985332 2233333322 2334578889999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeC---CEEEEEe--cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEe--CCCcEEEE
Q 009274 379 SGHKSAVSTLAVCN---GVLYSGS--RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH--ESGSIKVW 451 (538)
Q Consensus 379 ~~h~~~v~~l~~~~---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iw 451 (538)
..|...|.+++|++ .++++++ .|+.|++||+++++.+..+..+ ..+ ..++|+|+++++++++ .||.|++|
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v-~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQV-TSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCE-EEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcE-EEEEECCCCCeEEEEeecCCCcEEEE
Confidence 99999999999992 3777765 7999999999999998888643 334 4479999999999954 89999999
Q ss_pred eCCc--c--eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEee
Q 009274 452 RNDK--F--MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (538)
Q Consensus 452 d~~~--~--~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~ 499 (538)
|... . ...+.+|...|.++.+ ++++|++++.||.|++||+.+++....
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 9554 3 3346789999998887 899999999999999999998875443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=246.58 Aligned_cols=245 Identities=18% Similarity=0.221 Sum_probs=199.9
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC----ceEEEEecCCcCeEEEEEecC-CCCEEEEEcCCCcEEEE
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----SHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVW 320 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vw 320 (538)
+.+|.+.|++++|+ +++|++|+.||.|++||+.++ +....+.+|...|.+++|+|. ++.++++++.||.|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 68999999999998 899999999999999999876 467778899999999999986 47789999999999999
Q ss_pred EccCCCCCc------ceeeecccCCceeeeEEEEeec--CCEEEEeeCCCcEEEEECCCCceeEEec-------------
Q 009274 321 SFSFPLGHE------PLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMS------------- 379 (538)
Q Consensus 321 d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~------------- 379 (538)
|+.++.... .......+.. .....+++++ ++++++++.||.|++||+++++.+..+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKG--SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred ecCCCcccccccCcceeeeecccCC--ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 998764321 2233333222 2334578888 8999999999999999999887554432
Q ss_pred CCCCCeEEEEEe-----CCEEEEEecCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCC----CEEEEEeCCCcE
Q 009274 380 GHKSAVSTLAVC-----NGVLYSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQ----HTLVVSHESGSI 448 (538)
Q Consensus 380 ~h~~~v~~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i 448 (538)
.|...+.+++|+ ++++++++.|+.+.+|+...++. +..+..+ ...+.. ++|+|++ ++|++|+.||.|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~-~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-KSLIRS-ISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC-CSCEEE-EEECCCSSCSSEEEEEEETTSCE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC-CcceeE-EEECCCCCCcceEEEEEcCCCeE
Confidence 688899999997 45999999999998888887775 4444443 444444 7999998 899999999999
Q ss_pred EEEeCC------------------------------------------------cceeeeccccceEEEEEe--CCCEEE
Q 009274 449 KVWRND------------------------------------------------KFMKSMQTHKGSVFAVFL--EGKWLF 478 (538)
Q Consensus 449 ~iwd~~------------------------------------------------~~~~~~~~h~~~v~~~~~--~~~~l~ 478 (538)
++||.. +.+..+.+|...|.+++| ++++|+
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 999954 345567789999999988 899999
Q ss_pred EEeCCCeEEEEecCCCee
Q 009274 479 TGGWDKTVSVQELAGDEF 496 (538)
Q Consensus 479 sgs~dg~v~iwd~~~~~~ 496 (538)
+++.||.|++||+.+++.
T Consensus 323 s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEETTSCEEEEEECTTSC
T ss_pred EecCCCcEEEEecCcCcc
Confidence 999999999999987654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=259.02 Aligned_cols=265 Identities=12% Similarity=0.067 Sum_probs=199.3
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEe-----------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc---e
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---H 284 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l-----------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~---~ 284 (538)
.+.++.+++++..++++..++.+++|++ .+|.+.|++++|+ +++|++++.|++|++||+.+++ .
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 4667778888888888888888888764 4799999999999 8899999999999999999877 6
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcE
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 364 (538)
...+..|...|.+++|+|++ .++++++.|+.|++||+++.............+. ......+++|++++|++|+.|+.|
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR-STILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp EEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCC-SCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccC-CCeEEEEEcCCCCEEEEEeCCCEE
Confidence 77788899999999999954 5678999999999999987764333444443111 223355788899999999999999
Q ss_pred EEEECC------------------CCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCce----eEEEec
Q 009274 365 KAWSLL------------------DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSL----LTVLEE 420 (538)
Q Consensus 365 ~iwd~~------------------~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~ 420 (538)
++||++ .++++..+ +|...|.+++|+ +++|++++.|+.|++||+++++. +..+..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence 999985 34566666 899999999999 55999999999999999999887 666665
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-c---e----------------------------------eee--
Q 009274 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-F---M----------------------------------KSM-- 460 (538)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~---~----------------------------------~~~-- 460 (538)
+. ..+.. ++|+|++++|++|+.++.+ +|+... . . ..+
T Consensus 250 ~~-~~v~~-~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (377)
T 3dwl_C 250 SQ-LPLRS-LLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326 (377)
T ss_dssp SS-SCEEE-EEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred CC-CceEE-EEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence 53 33444 7999999999988766655 665321 0 0 001
Q ss_pred --------------ccccceEEEEEe---CCC---EEEEEeCCCeEEEEec
Q 009274 461 --------------QTHKGSVFAVFL---EGK---WLFTGGWDKTVSVQEL 491 (538)
Q Consensus 461 --------------~~h~~~v~~~~~---~~~---~l~sgs~dg~v~iwd~ 491 (538)
..|...|.++.+ ++. .|+|||.||.|++||+
T Consensus 327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 128999999975 333 7999999999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=245.41 Aligned_cols=276 Identities=17% Similarity=0.266 Sum_probs=219.1
Q ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
|.++|.+++|+ |++++++..++.+..|+...........+|...|.+++|+|+ +.++++++ ||.|++||+.++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCce
Confidence 45789999998 889988888888877776655555555689999999999985 45778888 999999999987665
Q ss_pred cceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEe--CCEEEEEecCCcE
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 404 (538)
..+...............+++++++++++++.||.|++||+++++ ....+..|...|.+++|+ ++++++++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 555544422222344466888999999999999999999999887 566778899999999999 5599999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEE
Q 009274 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTG 480 (538)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sg 480 (538)
++||+++++.+..+..+. ..+. .++++|+++++++++.||.|++||.++ ....+ .|...+.++.+ ++++++++
T Consensus 166 ~~~d~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHT-DGAS-CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp EEEETTTTEEEEEECCCS-SCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCCCCceeeeeeccc-CceE-EEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEE
Confidence 999999999888887653 3444 479999999999999999999999654 33333 46778888877 89999999
Q ss_pred eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEEcC
Q 009274 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 481 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~~~ 537 (538)
+.|+.|++||+.+.+...... +...+..+.+ +++ .+++++.||.|++|++.
T Consensus 243 ~~~~~i~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDKYQLHL------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ETTSCEEEEETTSSCEEEECC------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCCcEEEEECCCCCeEEEcC------CccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 999999999999887543322 2334555555 444 58889999999999985
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=251.14 Aligned_cols=276 Identities=9% Similarity=0.044 Sum_probs=200.9
Q ss_pred CcEEEEEEc--CCEEEEEeCCC-------cEEEEeCCCCce----------EEEEecCCcCeEEEEEecCCCCEEEEE--
Q 009274 253 DCVTGLAVG--GGFLFSSSFDK-------SIHVWSLKDFSH----------VHTFKGHDHKVMAVVYVDEDQPLCISG-- 311 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg-------~i~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~-- 311 (538)
-||+|++|+ +++|++|+.|. .|++|++..... ...+..|...|.++++.+ ..+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILVGCN 91 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEEECC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEEEEC
Confidence 589999999 88888887543 599999875432 124567888999988753 344544
Q ss_pred ---------cCCCcEEEEEccCCCCCcceee-e---cccCCceeeeEEEEeecCCEEEE--eeCCCcEEEEECCCCceeE
Q 009274 312 ---------DSGGGIFVWSFSFPLGHEPLKK-W---NEEKDWRYSGIHALTTSGRYLYT--GSGDRTIKAWSLLDGTLSC 376 (538)
Q Consensus 312 ---------~~dg~i~vwd~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~s--g~~dg~i~iwd~~~~~~~~ 376 (538)
+.|+++++|++........... . ..........+++|+|||+++++ ++.|++|++||+++++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 4578899999876543221111 1 11111123446799999998764 4578999999999999998
Q ss_pred EecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC----cEEE
Q 009274 377 TMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG----SIKV 450 (538)
Q Consensus 377 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i 450 (538)
.+. |...|.+++|+ +.++++++ ++.+++|+..+++.+..............++|+|+++++++++.|+ .++.
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 886 78889999999 44777776 5567788887877665443322233344579999999999999887 5788
Q ss_pred EeCCc------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE
Q 009274 451 WRNDK------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK 521 (538)
Q Consensus 451 wd~~~------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 521 (538)
|+... ....+.+|...|++++| +|++|++|+.|++|+|||+.+++........ |...+.++.| ||+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g----H~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA----HSFAITEVTISPDST 325 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS----SSSCEEEEEECTTSC
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc----ccCCEEEEEECCCCC
Confidence 88543 23456789999999887 9999999999999999999998876544321 3345555555 5665
Q ss_pred -EEEEECCCeEEEEEcC
Q 009274 522 -LFVGCADRTVKVYYYG 537 (538)
Q Consensus 522 -l~sg~~dg~v~vw~~~ 537 (538)
|++|+.|++|+||++.
T Consensus 326 ~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred EEEEEeCCCeEEEEEcC
Confidence 8889999999999984
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=249.39 Aligned_cols=279 Identities=13% Similarity=0.132 Sum_probs=215.5
Q ss_pred EEEEeecCCCcEEEEEEc-C----CEEEEEeCCCcEEEEeCCC-CceE-EEEecCCcCeEEEEEecCCCCEEEEEcCCCc
Q 009274 244 KFKDLQGHRDCVTGLAVG-G----GFLFSSSFDKSIHVWSLKD-FSHV-HTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~-~----~~l~s~s~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 316 (538)
.+..+.+|.+.|++++|+ . ++|++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+| ++.++++++.||.
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKT 109 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCc
Confidence 456789999999999999 3 7999999999999999987 5554 78889999999999999 5557899999999
Q ss_pred EEEEEccCCCCCcceeeecccCCceeeeEEEE--eecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCE
Q 009274 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL--TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGV 394 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 394 (538)
|++||+.+..... ...+.. .....++ +++++++++++.||.|++||+++++.+..+..|. .+.++.+.+..
T Consensus 110 v~iwd~~~~~~~~----~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ----IAQHDA--PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPM 182 (368)
T ss_dssp EEEEETTTTEEEE----EEECSS--CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTE
T ss_pred EEEEEcCCCCcee----eccccC--ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCe
Confidence 9999998654322 122222 2223455 6788899999999999999999999999888654 67888888889
Q ss_pred EEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE----EEEEeCCCcEEEEeCCc-----ceeeeccccc
Q 009274 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT----LVVSHESGSIKVWRNDK-----FMKSMQTHKG 465 (538)
Q Consensus 395 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~dg~i~iwd~~~-----~~~~~~~h~~ 465 (538)
+++++.++.+++||++..................++.+.++... +++++.||.|++||... ....+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 99999999999999988765444333222333344555554443 99999999999999653 4567777776
Q ss_pred ------------eEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE-EEEEECCC
Q 009274 466 ------------SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK-LFVGCADR 529 (538)
Q Consensus 466 ------------~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~sg~~dg 529 (538)
.|.++++ ++++|++++.||.|++||+.+++....... +...+..+.+ +++. |++|+.|+
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-----LDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-----CSSCEEEEEECTTSSCEEEEECCC
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-----CCCCceEEEECCCCCeEEEEeccc
Confidence 6998887 889999999999999999999877654432 3335555555 4554 88899888
Q ss_pred eEEEEE
Q 009274 530 TVKVYY 535 (538)
Q Consensus 530 ~v~vw~ 535 (538)
..+.|+
T Consensus 338 ~~~~~~ 343 (368)
T 3mmy_A 338 WSKGHE 343 (368)
T ss_dssp STTCGG
T ss_pred cccccc
Confidence 655544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=250.64 Aligned_cols=306 Identities=18% Similarity=0.175 Sum_probs=215.3
Q ss_pred Cccceeeeecc-CcceeEEeecCCeEEEEEee----------------------cCCCcEEEEEEc---CCEEEEEeCCC
Q 009274 219 GADIDQARAAG-GVKDLVNGLSKGNVKFKDLQ----------------------GHRDCVTGLAVG---GGFLFSSSFDK 272 (538)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~----------------------~h~~~V~~l~~~---~~~l~s~s~dg 272 (538)
...+.++.+.+ ++..++++..++.+.+|++. +|...|++++|+ +++|++++.||
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 34578888988 88999999999999999964 499999999998 57999999999
Q ss_pred cEEEEeCCCCceEEEEecCCcCeEEEEEecCC--CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee
Q 009274 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED--QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT 350 (538)
Q Consensus 273 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (538)
.|++||+.+++....+. +...+.++.|++.+ ..++++++.||.|++||+.++.....+. .+.. .....+++|
T Consensus 123 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~--~v~~~~~~~ 196 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---GHRQ--EILAVSWSP 196 (408)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---CCCS--CEEEEEECS
T ss_pred eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---CCCC--cEEEEEECC
Confidence 99999999999888877 78889999999854 3489999999999999998765443332 2222 233557888
Q ss_pred cCC-EEEEeeCCCcEEEEECCCCc-eeEEe---------------cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCC
Q 009274 351 SGR-YLYTGSGDRTIKAWSLLDGT-LSCTM---------------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD 411 (538)
Q Consensus 351 ~~~-~l~sg~~dg~i~iwd~~~~~-~~~~~---------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~ 411 (538)
+++ .+++|+.||.|++||++++. .+..+ ..|...|.+++|+ +++|++++.|+.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 888 69999999999999998765 33333 5788999999999 55999999999999999999
Q ss_pred CceeEEEecCC----CCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCC
Q 009274 412 HSLLTVLEEDS----SGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWD 483 (538)
Q Consensus 412 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~d 483 (538)
++......... ...... ......+..+++++.|+.|++||. .+.+..+.+|...|.++++ ++++|++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred Cccceecccccccccccccee-EEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 87654443211 111111 223344556777788999999995 4578888999999999887 89999999999
Q ss_pred CeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEEECCCeEEEEEcC
Q 009274 484 KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 484 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~v~vw~~~ 537 (538)
|.|++||+.+.+......... ........ ...+.+++.|+.+++|+..
T Consensus 356 g~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 356 CNILAWVPSLYEPVPDDDETT------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp SCEEEEEECC---------------------------------------------
T ss_pred CeEEEEeCCCCCccCCCCceE------eccccccccceeecccCccCceeecCCc
Confidence 999999999887543322111 11111111 3345668889999999863
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=238.70 Aligned_cols=269 Identities=17% Similarity=0.206 Sum_probs=202.5
Q ss_pred EEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 009274 255 VTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 255 V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
.++|+|+ +++|++| .|++|+|||+++++.+..++ +|...|.+++|+|+ +.++++|+.||+|++||+++++..
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~--- 102 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRL--- 102 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEE---
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeE---
Confidence 4679999 7777665 59999999999999988776 57788999999985 458899999999999999876533
Q ss_pred eeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEE
Q 009274 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd 408 (538)
.....+. ..+.++++++..+++|+.++.+++|+.... ..+..+.+|...+.++.+. +.++++++.|++|++||
T Consensus 103 ~~~~~h~----~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 103 RNMTSHS----ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp EEEECCS----SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEecCcc----ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 3333332 235678889999999999999999998875 4567788999999999998 66999999999999999
Q ss_pred CCCCceeE---EEecCCCCceEEEEEEcCCCC-EE--EEEeCCCcEEEEeCCc-ceeeeccccceEEEEEe--CCCEEEE
Q 009274 409 LSDHSLLT---VLEEDSSGAVSSVLSLTAVQH-TL--VVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFT 479 (538)
Q Consensus 409 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~l--~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~--~~~~l~s 479 (538)
+++++... .....+.+.+.. +.+++++. .+ ++++.++.|++||... .......+...+..+.+ +++.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFTQHQGAVKA-VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp SSCBTTBSCCSEEECCCCSCEEE-EEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccceeeecccCCceEE-EEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEE
Confidence 99876321 122222344444 56776654 33 4566789999999654 23333445666666655 7777766
Q ss_pred Ee--CCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEEcCC
Q 009274 480 GG--WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 480 gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~~~~ 538 (538)
++ .|+.|++||+.+++....+.. |...+.++.+ +++ .|++|+.||+|+|||+.+
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~g-----H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 54 799999999999887665542 3445666655 455 588999999999999853
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=260.22 Aligned_cols=276 Identities=16% Similarity=0.199 Sum_probs=216.2
Q ss_pred CcEEEEEEc--CC-EEEEE----------eCCCcEEEEeCCCCc---eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCc
Q 009274 253 DCVTGLAVG--GG-FLFSS----------SFDKSIHVWSLKDFS---HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (538)
Q Consensus 253 ~~V~~l~~~--~~-~l~s~----------s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 316 (538)
..|.+++|+ ++ ++++| +.|+.|++||+.+++ .+..+ .|...|.+++|+|++ .++++++.||.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN-KIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS-SCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC-CeEEEEccCCe
Confidence 468889998 54 89999 899999999998875 33333 588999999999855 46799999999
Q ss_pred EEEEEccCCCCCc-ceeeecccCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCc------eeEE---ecCCCCCe
Q 009274 317 IFVWSFSFPLGHE-PLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGT------LSCT---MSGHKSAV 385 (538)
Q Consensus 317 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~------~~~~---~~~h~~~v 385 (538)
|++||+.+..... .......+.. ....++++++ ++++++++.||.|++||+++++ .... +..|...|
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred EEEeecccccccccchhhccCCcc--ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999998733222 3333333332 2335678887 7899999999999999999876 3333 36799999
Q ss_pred EEEEEe-C--CEEEEEecCCcEEEEECCCCceeEEEecCC-----CCceEEEEEEcCCC-CEEEEEeCCC---cEEEEeC
Q 009274 386 STLAVC-N--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDS-----SGAVSSVLSLTAVQ-HTLVVSHESG---SIKVWRN 453 (538)
Q Consensus 386 ~~l~~~-~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~l~~~~~dg---~i~iwd~ 453 (538)
.+++|+ + .++++++.|+.|++||+++++.+..+..+. ...+ ..++|+|++ .++++++.|+ .|++||.
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL-SVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE-EEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce-EEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999 3 489999999999999999999888887653 3334 447999997 6899999998 9999996
Q ss_pred C---cceeeec-cccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC--EEEE
Q 009274 454 D---KFMKSMQ-THKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFV 524 (538)
Q Consensus 454 ~---~~~~~~~-~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s 524 (538)
+ .....+. +|...|.+++| ++++|++++.||.|++||+.+++........ ...+....+.+++ .+++
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR----GNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS----SSCCCCEEECTTCTTEEEE
T ss_pred CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC----CCceEEEEECCCCCCEEEE
Confidence 5 3566777 89999999987 7889999999999999999988766554432 2223334444554 6888
Q ss_pred EECCCeEEEEEcC
Q 009274 525 GCADRTVKVYYYG 537 (538)
Q Consensus 525 g~~dg~v~vw~~~ 537 (538)
++.||.|++|++.
T Consensus 324 ~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 324 ASFDNKIEVQTLQ 336 (416)
T ss_dssp CCSSSEEEEEESC
T ss_pred EecCCcEEEEEcc
Confidence 9999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=249.06 Aligned_cols=267 Identities=18% Similarity=0.266 Sum_probs=204.6
Q ss_pred cEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 254 CVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 254 ~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
..+.|+|+ ++.|++|. |++|+|||+.+++....+. +|...|++++|+|+ +.++++|+.||+|++||+.+++.
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~--- 181 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKR--- 181 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE---
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcE---
Confidence 35779999 77777765 9999999999999888775 57788999999995 55889999999999999987643
Q ss_pred eeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEE
Q 009274 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLW 407 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iw 407 (538)
+.....+. ..+.++++++..+++|+.|+.+++||.... ..+..+.+|...+..+.++ +.++++++.|+.+++|
T Consensus 182 ~~~~~~h~----~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 182 LRNMTSHS----ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp EEEECCCS----SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEeCCC----CceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 33333332 246688899999999999999999998864 4567789999999999999 6699999999999999
Q ss_pred ECCCCce----eEEEecCCCCceEEEEEEcCCC-CEEEEE--eCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCE
Q 009274 408 SLSDHSL----LTVLEEDSSGAVSSVLSLTAVQ-HTLVVS--HESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKW 476 (538)
Q Consensus 408 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~--~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~ 476 (538)
|..+++. +.....+ ...+.. ++|+|++ ..++++ +.|++|++||..+ ....+..|. .+.++.+ +++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~-~~~V~~-~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~ 334 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQH-QGAVKA-VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 334 (420)
T ss_dssp ESSCCSSCSCCSEEECCC-SSCEEE-EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTE
T ss_pred eeccccccceeeeeeccc-CCceee-eeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCe
Confidence 9988753 3333333 444444 5788765 555554 4799999999654 555555554 4555554 7888
Q ss_pred EEEEe--CCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEEcC
Q 009274 477 LFTGG--WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 477 l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~~~ 537 (538)
+++++ .|+.|++||+.+++....+.. |...+.++.+ +++ .|++|+.||+|++||+.
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~g-----H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 77765 789999999999887665432 3345555555 455 58999999999999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=263.51 Aligned_cols=283 Identities=17% Similarity=0.227 Sum_probs=227.6
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC----ceEEEEecCCcC-eEEEEEecC-CCCEEEEEcCCCcEEEE
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----SHVHTFKGHDHK-VMAVVYVDE-DQPLCISGDSGGGIFVW 320 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~-v~~l~~~~~-~~~~l~s~~~dg~i~vw 320 (538)
..|.+.|++++|+ +++|++++ |+.|++||+.++ +....+.+|... |.+++|+|. ++.++++++.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 4689999999999 88999998 889999999999 899999999999 999999982 34588999999999999
Q ss_pred EccCCCC-----CcceeeecccCCceeeeEEEEeecCCEEEEeeCC----CcEEEEECCCCceeEEecCCCCCeEEEEEe
Q 009274 321 SFSFPLG-----HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD----RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391 (538)
Q Consensus 321 d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 391 (538)
|+.++.. ......+..+. ......+++++++++++++.+ +.|++|| +++.+..+.+|...|.+++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLA--GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC
T ss_pred eCCCCcccccccccccchhhccc--ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC
Confidence 9974411 11222222222 223456889999999999988 6888888 677888999999999999999
Q ss_pred --CC-EEEEEecCCcEEEEECCCCceeEEEecCCCC--ceEEEEEEcCC-CCEEEEEeCCCcEEEEeCC--cceeee-c-
Q 009274 392 --NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG--AVSSVLSLTAV-QHTLVVSHESGSIKVWRND--KFMKSM-Q- 461 (538)
Q Consensus 392 --~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~--~~~~~~-~- 461 (538)
+. .+++++.|+.|++||+.+++.+..+..+... .+. .++|+|+ ++++++++.||.|++||.. +.+..+ .
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR-DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE-EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence 33 8999999999999999999998888765431 344 4799999 9999999999999999954 466667 5
Q ss_pred --cccceEEEEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 462 --THKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 462 --~h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.|...|.++.+ ++++|++++.||.|++||+.+++..................+.+..+..+++++.||.|++|++.
T Consensus 249 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 249 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred ccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 89999999998 89999999999999999999888766555432111122333333357779999999999999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=284.61 Aligned_cols=313 Identities=19% Similarity=0.249 Sum_probs=246.0
Q ss_pred CCccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCce
Q 009274 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSH 284 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~ 284 (538)
....+..+.+++++..++++..++.+.+|+ +.+|...|++++|+ +.++++|+.|+.|++||+.+++.
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 345678889999999999999999999997 46899999999997 45899999999999999999999
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceee-------------------------------
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK------------------------------- 333 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------------------- 333 (538)
+..+.+|.+.|.+++|+|+ +.++++++.||.|++||+.++.....+..
T Consensus 736 ~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 9999999999999999995 45889999999999999876532211110
Q ss_pred ---------eccc----------CCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C
Q 009274 334 ---------WNEE----------KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 334 ---------~~~~----------~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~ 392 (538)
+... .........+++++++++++++.||.|++||+.++..+..+.+|...|.+++|+ +
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 0000 001122345788999999999999999999999999999999999999999999 5
Q ss_pred CEEEEEecCCcEEEEECCC-------------------------------------------------------------
Q 009274 393 GVLYSGSRDGTIRLWSLSD------------------------------------------------------------- 411 (538)
Q Consensus 393 ~~l~s~s~dg~i~iwd~~~------------------------------------------------------------- 411 (538)
.++++++.|+.|++||+.+
T Consensus 895 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 974 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 974 (1249)
T ss_dssp SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS
T ss_pred CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC
Confidence 5899999999999998542
Q ss_pred ------------------CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeeccccceEEEEEe
Q 009274 412 ------------------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL 472 (538)
Q Consensus 412 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~~~~ 472 (538)
++....+..+ ...+.. ++|+|+++++++++.||.|++||..+ ....+..|...+.++.+
T Consensus 975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h-~~~v~~-l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A 975 YVAFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRH-IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL 1052 (1249)
T ss_dssp EEEEEETTSCCEEEETTTTSCEEECCCC-SSCCCC-EEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCceeeecccC-CCceEE-EEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEE
Confidence 1111222222 222333 68999999999999999999999654 33456689999999988
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEEEcC
Q 009274 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 -~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~~~ 537 (538)
.+..+++++.||.|++||+.+++........ ...+....+.+++ .+++++.||.|++|++.
T Consensus 1053 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1053 LQDSRLLSWSFDGTVKVWNVITGRIERDFTCH----QGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp CSSSEEEEEESSSEEEEEETTTTCCCEEEECC----SSCCCCEEECSSSSSCEEECCSSCCCEECSS
T ss_pred cCCCcEEEEECCCcEEEEECCCCceeEEEccc----CCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 6678999999999999999988765554322 2223334444555 48899999999999975
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=235.29 Aligned_cols=262 Identities=20% Similarity=0.289 Sum_probs=214.4
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe---------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC---ceE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHV 285 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~---~~~ 285 (538)
..+..+.+ +++..++++..++.+++|++ ..|...|++++|+ ++++++++.||.|++|++.+. +.+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 34777777 77888999999999999984 4689999999999 899999999999999998654 667
Q ss_pred EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcE
Q 009274 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTI 364 (538)
Q Consensus 286 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i 364 (538)
..+.+|...|.++.| ++.++++++.||.|++||. .........+.. ... ...+.+ +++.+++++.||.|
T Consensus 98 ~~~~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d~-----~~~~~~~~~~~~-~v~-~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF---QDGVVISGSWDKTAKVWKE-----GSLVYNLQAHNA-SVW-DAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp CEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEET-----TEEEEEEECCSS-CEE-EEEEEETTTTEEEEEETTSCE
T ss_pred cchhhcccCEEEEEe---cCCEEEEEeCCCCEEEEcC-----CcEEEecccCCC-cee-EEEEccCCCCEEEEEECCCCE
Confidence 888999999999999 3458899999999999992 122333333322 222 234445 88999999999999
Q ss_pred EEEECCCCceeEEecC-CCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 009274 365 KAWSLLDGTLSCTMSG-HKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 365 ~iwd~~~~~~~~~~~~-h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
++|| ..+....+.. |...+.+++|+ ++.+++++.|+.|++||+++++.+..+..+. ..+.. ++++|++ .++++
T Consensus 168 ~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~-~~~~~~~-~l~~~ 242 (313)
T 3odt_A 168 KLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYC-IKLLPNG-DIVSC 242 (313)
T ss_dssp EEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEE-EEECTTS-CEEEE
T ss_pred EEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCC-ceEEE-EEEecCC-CEEEE
Confidence 9999 5567777776 99999999999 6679999999999999999999999888654 44444 7999999 58899
Q ss_pred eCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEe
Q 009274 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEE 498 (538)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~ 498 (538)
+.||.|++||.. +....+..|...|.++.+ +++ +++++.||.|++||+.+++...
T Consensus 243 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 243 GEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp ETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred ecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 999999999954 567888899999999988 666 7789999999999999876543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=247.89 Aligned_cols=245 Identities=17% Similarity=0.242 Sum_probs=186.0
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC--CCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
+..+.+|.++|++++|+ +++|++|+.||.|++||+. +++.+..+.+|...|.+++|+++.
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------- 67 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---------------- 67 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG----------------
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC----------------
Confidence 45688999999999999 8999999999999999997 667788899999999999997632
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEe----CCE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVC----NGV 394 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~----~~~ 394 (538)
++++|++|+.||.|++||+.+++ .+..+..|...|.+++|+ +.+
T Consensus 68 ------------------------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 117 (379)
T 3jrp_A 68 ------------------------------FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL 117 (379)
T ss_dssp ------------------------------GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred ------------------------------CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE
Confidence 13345555555555555555554 566677899999999998 348
Q ss_pred EEEEecCCcEEEEECCCCcee--EEEecCCCCceEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCc----
Q 009274 395 LYSGSRDGTIRLWSLSDHSLL--TVLEEDSSGAVSSVLSLTA-------------VQHTLVVSHESGSIKVWRNDK---- 455 (538)
Q Consensus 395 l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~---- 455 (538)
+++++.|+.|++||++++... ..+..+ ...+.. +.|+| ++.++++++.||.|++||.+.
T Consensus 118 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 118 LLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEEETTSEEEEEECCTTSCCCEEEEECC-TTCEEE-EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred EEEecCCCcEEEEecCCCCceeeEEecCC-CCceEE-EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 999999999999999987433 333333 344444 68998 699999999999999999542
Q ss_pred --ceeeeccccceEEEEEe--C---CCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEE
Q 009274 456 --FMKSMQTHKGSVFAVFL--E---GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGC 526 (538)
Q Consensus 456 --~~~~~~~h~~~v~~~~~--~---~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~ 526 (538)
....+.+|...|.+++| + +++|++++.||.|++||+.++.............+...+..+.+ +++ .|++++
T Consensus 196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 44677889999999987 5 88999999999999999987642111111111113344555555 455 488899
Q ss_pred CCCeEEEEEcC
Q 009274 527 ADRTVKVYYYG 537 (538)
Q Consensus 527 ~dg~v~vw~~~ 537 (538)
.||.|++|++.
T Consensus 276 ~dg~i~iw~~~ 286 (379)
T 3jrp_A 276 GDNKVTLWKEN 286 (379)
T ss_dssp SSSSEEEEEEE
T ss_pred CCCcEEEEeCC
Confidence 99999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=266.62 Aligned_cols=267 Identities=19% Similarity=0.297 Sum_probs=220.7
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 289 (538)
.+..+.+++++..++++..++.+.+|+ +.+|.++|++++|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 477888889999999999999999887 45799999999999 8999999999999999999999999999
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEE
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd 368 (538)
+|.+.|.+++|+|++ .++++++.||.|++||+.++.. .......+. ......+++| +++.+++++.||.|++||
T Consensus 95 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~vwd 169 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA--LEQTFEGHE--HFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (814)
T ss_dssp CCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSE--EEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred cCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCce--EEEEEcCCC--CcEEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 999999999999955 4778999999999999986522 222222222 2233557788 788999999999999999
Q ss_pred CCCCceeEEecCCC-CCeEEEEEe----CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEe
Q 009274 369 LLDGTLSCTMSGHK-SAVSTLAVC----NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 369 ~~~~~~~~~~~~h~-~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (538)
+.+++....+..+. ..+.+++|+ +.++++++.||.|++||+++++.+..+..+. ..+. .++|+|+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~-~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVS-FAVFHPTLPIIISGS 247 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS-SCEE-EEEECSSSSEEEEEE
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC-CCEE-EEEEcCCCCEEEEEe
Confidence 99988887776655 889999997 3499999999999999999999988887653 3444 379999999999999
Q ss_pred CCCcEEEEeCC--cceeeeccccceEEEEEe--CCC-EEEEEeCCCeEEEEecCCC
Q 009274 444 ESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 444 ~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~-~l~sgs~dg~v~iwd~~~~ 494 (538)
.||.|++||.. +....+..|...+.++++ ++. .+++++.|+.+.+|++...
T Consensus 248 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 99999999954 567788889999999987 554 2344445777888987643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=252.29 Aligned_cols=267 Identities=14% Similarity=0.191 Sum_probs=210.0
Q ss_pred Cccceeeeecc-CcceeEEeecCCeEEEEEee--------------cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC-
Q 009274 219 GADIDQARAAG-GVKDLVNGLSKGNVKFKDLQ--------------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK- 280 (538)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~--------------~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~- 280 (538)
...+.++.+.+ ++..++++..++.+++|++. +|.++|++++|+ +++|++|+.||+|++||++
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 34688899999 88999999999999999853 589999999998 8999999999999999994
Q ss_pred --CCceEEEEec------------CCcCeEEEEEec-CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeE
Q 009274 281 --DFSHVHTFKG------------HDHKVMAVVYVD-EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI 345 (538)
Q Consensus 281 --~~~~~~~~~~------------h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 345 (538)
+++....+.. +...+.++.+.. .++.++++++.||.|++||+++......+. ..........
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~h~~~v~~ 219 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE---NSPRHGAVSS 219 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE---CCGGGCCEEE
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc---cCCCCCceEE
Confidence 5655554443 445566666431 356688999999999999998765433332 2111123345
Q ss_pred EEEeecCCEEEEeeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEeC------CEEEEEecCCcEEEEECCCCceeEEE
Q 009274 346 HALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHKSAVSTLAVCN------GVLYSGSRDGTIRLWSLSDHSLLTVL 418 (538)
Q Consensus 346 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~------~~l~s~s~dg~i~iwd~~~~~~~~~~ 418 (538)
+++++++++|++|+.||.|++||+++++++..+. .|...|.+++|++ .++++|+.|+.|++||+++++.+..+
T Consensus 220 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 220 ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 6788899999999999999999999999999886 7888999997762 28999999999999999999988888
Q ss_pred ecCC-------------------------CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeecc---------
Q 009274 419 EEDS-------------------------SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT--------- 462 (538)
Q Consensus 419 ~~~~-------------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--------- 462 (538)
..+. ...+.. ++++ ++++|++|+.||.|++||..+ ....+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 377 (437)
T 3gre_A 300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST-ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFI 377 (437)
T ss_dssp ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC-EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEE
T ss_pred EcCCCCCccceecccccccccceecccccCCceEE-EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEE
Confidence 7542 222333 5777 778999999999999999653 3333433
Q ss_pred ----------------------------ccceEEEEEe--C--CCEEEEEeCCCeEEEEe
Q 009274 463 ----------------------------HKGSVFAVFL--E--GKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 463 ----------------------------h~~~v~~~~~--~--~~~l~sgs~dg~v~iwd 490 (538)
|...|.++.+ + +.+|++|+.||.|++|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 378 PTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8889999887 4 66999999999999995
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-29 Score=245.30 Aligned_cols=262 Identities=16% Similarity=0.188 Sum_probs=206.6
Q ss_pred ccceeeeeccCc-ceeEEeecCCeEEEEEee-----------cCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCce
Q 009274 220 ADIDQARAAGGV-KDLVNGLSKGNVKFKDLQ-----------GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH 284 (538)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~-----------~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~ 284 (538)
..+.++.+.+++ ..++++..++.+++|++. +|.+.|++++|+ +++|++++.|+.|++||+.+ +.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 347788888887 899999999999999853 699999999998 48999999999999999986 56
Q ss_pred EEEEecCC---cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeC
Q 009274 285 VHTFKGHD---HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSG 360 (538)
Q Consensus 285 ~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~ 360 (538)
+..+..|. ..|.+++|+|+ +.++++++.|+.|++||++ + ..+..+..+.. ....++++++++ ++++|+.
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~-~---~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGLD-G---HEIFKEKLHKA--KVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEETT-S---CEEEEEECSSS--CEEEEEECSSCTTEEEEEET
T ss_pred eEEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEECC-C---CEEEEeccCCC--cEEEEEECCCCCCEEEEEeC
Confidence 66665544 88999999995 4588999999999999984 2 23333333332 233567888888 9999999
Q ss_pred CCcEEEEECCC----CceeEEecCCCCCeEEEEEeC---CEEEEEecCCcEEEEECCCCceeEEEecCCC------C---
Q 009274 361 DRTIKAWSLLD----GTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS------G--- 424 (538)
Q Consensus 361 dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~--- 424 (538)
|+.|++||+++ +..+..+ +|...|.+++|++ .+|++++.|+.|++||+++++....+..+.. .
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred CCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 99999999987 5566666 6999999999985 5999999999999999999887766654321 1
Q ss_pred ------ceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccceeeecc--ccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 425 ------AVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQT--HKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 425 ------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~--h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
.....+.++|++++ +++.||.|++||. ++.+..+.+ |...+.+++| ++++|++|+ ||.|++||++
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred EeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 11122466676666 7779999999995 456777776 4566666565 899999997 9999999987
Q ss_pred C
Q 009274 493 G 493 (538)
Q Consensus 493 ~ 493 (538)
+
T Consensus 382 ~ 382 (383)
T 3ei3_B 382 D 382 (383)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-28 Score=231.42 Aligned_cols=260 Identities=17% Similarity=0.296 Sum_probs=204.1
Q ss_pred eeeeeccCcceeEEeecCCeEEEEE-----------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 009274 223 DQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (538)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~-----------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 289 (538)
+.+..++++ .++++ .++.+++|+ +.+|...|++++|+ ++++++|+.||+|++||+++++.+..+.
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 334444433 34443 366677775 34688899999999 8999999999999999999999999999
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEEC
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~ 369 (538)
+|...+.++.+. +.++++++.++.+++|+...... .......+. .......+.++++++++++.|+.|++||+
T Consensus 107 ~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 107 SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH--HVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC--EEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred CccceEEEeecC---CCEEEEEecCCceEeeecCCCce--eEEEEcCcc--CceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 999999887764 45889999999999999875432 222222222 22335577888999999999999999999
Q ss_pred CCCce----eEEecCCCCCeEEEEEe---CCE--EEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 009274 370 LDGTL----SCTMSGHKSAVSTLAVC---NGV--LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 370 ~~~~~----~~~~~~h~~~v~~l~~~---~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (538)
++++. ......|.+.|.++++. +.. +++++.+++|++||.+............ .+. .+.++++++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~--~v~-~~~~~~~~~~~~ 256 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVC-SILWSPHYKELI 256 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS--CEE-EEEEETTTTEEE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee--eee-eeeecccccceE
Confidence 88653 34556788899999998 233 3566789999999999988776665432 233 368889988887
Q ss_pred EEe--CCCcEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC
Q 009274 441 VSH--ESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 441 ~~~--~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
+++ .|+.|++||. .+++..+.+|.+.|++++| ++++|+||+.||+|++||+.+.
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 765 7999999995 4678899999999999987 8999999999999999998754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=234.14 Aligned_cols=231 Identities=20% Similarity=0.280 Sum_probs=184.8
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe-----------ecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCc-
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFS- 283 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-----------~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~- 283 (538)
..+..+.+++++..++++..++.+++|++ .+|.++|++++|+ +++|+||+.|++|++||+.+++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 45778889999999999999999999974 5799999999996 6899999999999999998874
Q ss_pred -eEEEEecCCcCeEEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeec----------
Q 009274 284 -HVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS---------- 351 (538)
Q Consensus 284 -~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 351 (538)
.+..+.+|...|.+++|+|+. +.++++++.|++|++||+++...... .....+.. .....+++|+
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~--~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAI--GVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSS--CEEEEEECCCC---------
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccC--ccceEeecCCcccccccCCC
Confidence 567788999999999999863 67899999999999999986532211 22222221 1223456665
Q ss_pred ---CCEEEEeeCCCcEEEEECCCCc----eeEEecCCCCCeEEEEEeC-----CEEEEEecCCcEEEEECCCCce--e-E
Q 009274 352 ---GRYLYTGSGDRTIKAWSLLDGT----LSCTMSGHKSAVSTLAVCN-----GVLYSGSRDGTIRLWSLSDHSL--L-T 416 (538)
Q Consensus 352 ---~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~iwd~~~~~~--~-~ 416 (538)
+++|++|+.|++|++||+++++ ....+.+|...|.+++|++ .+|++++.|++|++||+++... . .
T Consensus 167 ~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~ 246 (297)
T 2pm7_B 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT 246 (297)
T ss_dssp ---CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE
T ss_pred CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee
Confidence 4699999999999999998776 5678899999999999993 4899999999999999987531 2 2
Q ss_pred EEe-cCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 009274 417 VLE-EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 417 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 454 (538)
.+. ..+...+. .++|+|++++|++++.||.|++|+..
T Consensus 247 ~~~~~~~~~~v~-~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 247 LLKEEKFPDVLW-RASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSSSCCSSCEE-EEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eeecccCCCcEE-EEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 221 12234444 47999999999999999999999854
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=260.12 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=193.0
Q ss_pred ceeEEeecCCeEEEEEe-------------ecCCCcEEEEEEc-C-------CEEEEEeCCCcEEEEeCCCCce------
Q 009274 232 KDLVNGLSKGNVKFKDL-------------QGHRDCVTGLAVG-G-------GFLFSSSFDKSIHVWSLKDFSH------ 284 (538)
Q Consensus 232 ~~~~~~~~~~~~~i~~l-------------~~h~~~V~~l~~~-~-------~~l~s~s~dg~i~iwd~~~~~~------ 284 (538)
..++++..++.+++|++ .+|.+.|++++|+ . ++||+++.||+|++||+.+++.
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 34566777888888875 3567889999998 2 5999999999999999986642
Q ss_pred -----EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeE-EEEeecC-CEEEE
Q 009274 285 -----VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI-HALTTSG-RYLYT 357 (538)
Q Consensus 285 -----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~s 357 (538)
...+.+|...|.+++|+++ ..|++|+.||+|++||++++.. ....+..+.. ....+ .++++++ ++|++
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~--~~~~~~~H~~-~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEV--PSFYDQVHDS-YILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSS--CSEEEECSSS-CEEEEEEECCTTSCCEEEE
T ss_pred eecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCC--ceEEeecccc-cEEEEEEEcCCCCCeEEEE
Confidence 3478899999999999874 3789999999999999986532 2222333333 23333 2456777 79999
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCC--CeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEc
Q 009274 358 GSGDRTIKAWSLLDGTLSCTMSGHKS--AVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT 433 (538)
Q Consensus 358 g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (538)
|+.|++|++||+++++++..+.+|.. .|.+++|+ +..+++++.|++|++||++++.++..+..| .+.+.. ++|+
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~s-va~S 406 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITA-IGVS 406 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEE-EECC
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-CCceEE-EEeC
Confidence 99999999999999888777777653 58899999 348999999999999999999988888775 445555 6999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCc----------------------------------------------ceeeeccccceE
Q 009274 434 AVQHTLVVSHESGSIKVWRNDK----------------------------------------------FMKSMQTHKGSV 467 (538)
Q Consensus 434 ~~~~~l~~~~~dg~i~iwd~~~----------------------------------------------~~~~~~~h~~~v 467 (538)
|++++|++|+.||+|++||... ....+.+|...|
T Consensus 407 p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V 486 (524)
T 2j04_B 407 RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINI 486 (524)
T ss_dssp SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSC
T ss_pred CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceE
Confidence 9999999999999999997311 011233466778
Q ss_pred EEEEe--C---CCEEEEEeCCCeEEEEecCCC
Q 009274 468 FAVFL--E---GKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 468 ~~~~~--~---~~~l~sgs~dg~v~iwd~~~~ 494 (538)
.+++| + +.++++|+.||.|+||++...
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 88887 4 349999999999999998765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=249.21 Aligned_cols=276 Identities=14% Similarity=0.205 Sum_probs=205.9
Q ss_pred EEEEEcCC---EEEEEeCCCcEEEEeCCCC----ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 256 TGLAVGGG---FLFSSSFDKSIHVWSLKDF----SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 256 ~~l~~~~~---~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
..++++.+ ++++++.||.|+||++.+. +.+..+.+|.+.|.+++|+|.++.++++|+.||+|++||+.++...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 34677743 3445788999999999654 2345678899999999999977789999999999999999876432
Q ss_pred ----cceeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe--CCEEEEEe
Q 009274 329 ----EPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC--NGVLYSGS 399 (538)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~~l~s~s 399 (538)
..+..+..+.. ....+++++++ +++++|+.||.|++||+++++.+..+ .+|...|.+++|+ +++|++++
T Consensus 118 ~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 118 LPLREPVITLEGHTK--RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp SCBCSCSEEEECCSS--CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred cccCCceEEecCCCC--eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 22333333332 23356788887 69999999999999999999999999 8899999999999 55999999
Q ss_pred cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE---eCCCcEEEEeCCcc---eeeec-cccceEEEEEe
Q 009274 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS---HESGSIKVWRNDKF---MKSMQ-THKGSVFAVFL 472 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~---~~~~~-~h~~~v~~~~~ 472 (538)
.|+.|++||+++++.+..+...+.+.....+.|+|+++++++| +.|+.|++||.+.. ..... .|...+.++.+
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999998888433333322336899999999999 79999999997642 22332 46677877766
Q ss_pred --CCCEEE-EEeCCCeEEEEecCCCe--eEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 473 --EGKWLF-TGGWDKTVSVQELAGDE--FEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 --~~~~l~-sgs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++++|+ +|+.||.|++||+.+++ ......+. +...+....+.+++.+++ +.++.+++|++.
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~-s~~~~~~~~~l~ 341 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEV-NKCEIARFYKLH 341 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCG-GGTEEEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccce-ecceeEEEEEcC
Confidence 788886 45579999999999876 22222221 122333444445655443 467799999974
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=240.05 Aligned_cols=231 Identities=23% Similarity=0.305 Sum_probs=182.6
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE-----------eecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCC--
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDF-- 282 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------l~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~-- 282 (538)
..+..+.+++++..++++..++.+++|+ +.+|.++|++++|+ +++|++|+.|++|++||++++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 4578888999999999999999998886 45899999999995 689999999999999999887
Q ss_pred ceEEEEecCCcCeEEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeec----------
Q 009274 283 SHVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS---------- 351 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 351 (538)
+....+.+|...|.+++|+|++ +.++++|+.|++|++||+..............+.. .....+++|+
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI--GCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS--CBCCCEECCCCCC------C
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC--CcceEEEccccCCccccccc
Confidence 4667788999999999999974 67889999999999999986432111111122211 1122355554
Q ss_pred -------CCEEEEeeCCCcEEEEECCCC---ceeEEecCCCCCeEEEEEeC------CEEEEEecCCcEEEEECCCCc--
Q 009274 352 -------GRYLYTGSGDRTIKAWSLLDG---TLSCTMSGHKSAVSTLAVCN------GVLYSGSRDGTIRLWSLSDHS-- 413 (538)
Q Consensus 352 -------~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~iwd~~~~~-- 413 (538)
+++|++|+.|++|++||++.. +++..+.+|...|.+++|++ .+|++|+.|++|++||+++..
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~ 251 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN 251 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc
Confidence 468999999999999999765 46778899999999999983 589999999999999997631
Q ss_pred --eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 009274 414 --LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 414 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 454 (538)
....+..+ ...+.. ++|+|++++|++++.|+.|++|+..
T Consensus 252 ~~~~~~~~~~-~~~v~~-v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 252 TWSPKLLHKF-NDVVWH-VSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCBCCEEEEC-SSCEEE-EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred chhhhhhhcC-CCcEEE-EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 12223333 344444 6999999999999999999999954
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=235.66 Aligned_cols=267 Identities=12% Similarity=0.111 Sum_probs=200.9
Q ss_pred CccceeeeeccCcceeEEeecC-------CeEEEEEe-------------------ecCCCcEEEEEEcCCEEEEEe---
Q 009274 219 GADIDQARAAGGVKDLVNGLSK-------GNVKFKDL-------------------QGHRDCVTGLAVGGGFLFSSS--- 269 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~l-------------------~~h~~~V~~l~~~~~~l~s~s--- 269 (538)
+.+|.++.+.+++..++++..+ +.+++|.+ .+|.+.|.+++++++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 4568889999999999988642 24778763 478889999999988888764
Q ss_pred --------CCCcEEEEeCCCCceEE----EE-----ecCCcCeEEEEEecCCCCEE-EEEcCCCcEEEEEccCCCCCcce
Q 009274 270 --------FDKSIHVWSLKDFSHVH----TF-----KGHDHKVMAVVYVDEDQPLC-ISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 270 --------~dg~i~iwd~~~~~~~~----~~-----~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
.|+.+++|++.+..... .. ..+...+.+++|+|++..++ ++++.|++|++||+.+......+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 46789999986543221 11 12445689999999887664 45668999999999876543332
Q ss_pred eeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE--ecCCCCCeEEEEEe--CCEEEEEecCC----c
Q 009274 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT--MSGHKSAVSTLAVC--NGVLYSGSRDG----T 403 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~--~~~l~s~s~dg----~ 403 (538)
. +.. ....++|+|+++++++++.+ .+.+|+..+++.+.. ..+|...|.+++|+ +.++++++.|+ .
T Consensus 174 ~----~~~--~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 174 E----TRG--EVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp E----CSS--CCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred C----CCC--ceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 2 111 12356899999999999865 567777777766543 45688899999999 45888998887 6
Q ss_pred EEEEECCCCcee----EEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceee-eccccceEEEEEe--CC
Q 009274 404 IRLWSLSDHSLL----TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKS-MQTHKGSVFAVFL--EG 474 (538)
Q Consensus 404 i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~-~~~h~~~v~~~~~--~~ 474 (538)
+++||+...... ..+..+ ...+. .++|+|+|++|++|+.|++|++||.. +++.. +.+|...|++++| ||
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~-~~~V~-~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNR-FKGIT-SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESS-CSCEE-EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred EeecccccceecceeeeeecCC-CCCeE-eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 889998776542 233333 33444 47999999999999999999999965 45665 4789999999987 99
Q ss_pred CEEEEEeCCCeEEEEecCCC
Q 009274 475 KWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~~~~ 494 (538)
++|++||.|++|+|||+..+
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-28 Score=244.61 Aligned_cols=253 Identities=14% Similarity=0.200 Sum_probs=204.4
Q ss_pred cCCeEEEEEeecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCC----------CceEEEEecCCcCeEEEEEecCCC
Q 009274 239 SKGNVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD----------FSHVHTFKGHDHKVMAVVYVDEDQ 305 (538)
Q Consensus 239 ~~~~~~i~~l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~ 305 (538)
..+.+.+....+|.+.|++++|+ +.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|++.
T Consensus 115 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 115 VCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp ---CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred CCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence 34556667788899999999998 46899999999999999976 678889999999999999999877
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCcc----eeeecccCCceeeeEEEEee-cCCEEEEeeCCCcEEEEECCCC---ceeEE
Q 009274 306 PLCISGDSGGGIFVWSFSFPLGHEP----LKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDG---TLSCT 377 (538)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~---~~~~~ 377 (538)
.++++|+.||.|++||+........ ...+..+.. ....+++++ ++.++++++.||.|++||++++ +.+..
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA--VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC--CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 7999999999999999987543221 222222221 223456777 5679999999999999999987 57778
Q ss_pred ecCCCCCeEEEEEe--CC-EEEEEecCCcEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 009274 378 MSGHKSAVSTLAVC--NG-VLYSGSRDGTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWR 452 (538)
Q Consensus 378 ~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd 452 (538)
+..|...|++++|+ +. ++++|+.||.|++||+++ ...+..+..+ ...+.. +.|+|+++ ++++++.||.|++||
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~-i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQ-VQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEE-EEECSSCTTEEEEEETTSCCEEEE
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEE-EEECCCCCCEEEEEeCCCcEEEEe
Confidence 88999999999999 33 799999999999999998 4567777765 344444 69999984 799999999999999
Q ss_pred CC----------------cceeeeccccceEEEEEe--CCC-EEEEEeCCCeEEEEecCCCe
Q 009274 453 ND----------------KFMKSMQTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 453 ~~----------------~~~~~~~~h~~~v~~~~~--~~~-~l~sgs~dg~v~iwd~~~~~ 495 (538)
+. +.+..+.+|...|.+++| ++. +|++++.||.|++|++....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 54 345666789999999988 666 99999999999999997543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-27 Score=227.80 Aligned_cols=262 Identities=14% Similarity=0.096 Sum_probs=213.8
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEEe------------ecCCCcEEEEEEc--CC-EEEEEeCCCcEEEEeC-CCC
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDL------------QGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSL-KDF 282 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l------------~~h~~~V~~l~~~--~~-~l~s~s~dg~i~iwd~-~~~ 282 (538)
...+..+.+++++..++++..++.+.+|++ .+|...|++++|+ ++ +|++|+.||.|++||+ .++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 345788888999999999999999999885 3688999999998 88 9999999999999999 776
Q ss_pred ceEEEEec--CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC---------CCCCcceeeecccCCceeeeEEEEeec
Q 009274 283 SHVHTFKG--HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF---------PLGHEPLKKWNEEKDWRYSGIHALTTS 351 (538)
Q Consensus 283 ~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (538)
+. ..+.+ |...|.+++|+| +.++++++.|+.|++||+.+ ......+. + ...+.++..+
T Consensus 91 ~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~----~~~v~~~~~~ 159 (342)
T 1yfq_A 91 SF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----V----KNKIFTMDTN 159 (342)
T ss_dssp SE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----S----CCCEEEEEEC
T ss_pred ce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----e----CCceEEEEec
Confidence 55 77788 999999999998 66889999999999999986 43332222 1 1224445555
Q ss_pred CCEEEEeeCCCcEEEEECCC-Cce--eEEecCCCCCeEEEEEeC---CEEEEEecCCcEEEEECCCC------ceeEEEe
Q 009274 352 GRYLYTGSGDRTIKAWSLLD-GTL--SCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDH------SLLTVLE 419 (538)
Q Consensus 352 ~~~l~sg~~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~------~~~~~~~ 419 (538)
++.+++++.|+.|++||+++ +.. ......|...|.+++|++ +++++++.||.|++||++.. +....+.
T Consensus 160 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 55599999999999999988 543 334467889999999985 59999999999999999887 7777777
Q ss_pred cCCC-------CceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccc-cceEEEEEeCCCEEEEEeCCCe-EEE
Q 009274 420 EDSS-------GAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTH-KGSVFAVFLEGKWLFTGGWDKT-VSV 488 (538)
Q Consensus 420 ~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h-~~~v~~~~~~~~~l~sgs~dg~-v~i 488 (538)
.+.. ......++|+|++++|++++.||.|++||.. +.+..+..| ...|.++++++++|++++.||. .+.
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccc
Confidence 6533 1133447999999999999999999999954 567788888 9999999999999999999998 555
Q ss_pred Eec
Q 009274 489 QEL 491 (538)
Q Consensus 489 wd~ 491 (538)
|..
T Consensus 320 ~~~ 322 (342)
T 1yfq_A 320 AAI 322 (342)
T ss_dssp SSS
T ss_pred ccc
Confidence 553
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=246.00 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=198.2
Q ss_pred cceeeeeccC-cceeEEeecCCeEEEEEe-----------ecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceE
Q 009274 221 DIDQARAAGG-VKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHV 285 (538)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~l-----------~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~ 285 (538)
.|.++.+.+. ...++++..+|.+++|++ .+|.++|++++|+ +++|+||+.||+|++||++++...
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 4778888874 567889999999999973 4799999999997 689999999999999999876544
Q ss_pred EEEec--CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCC
Q 009274 286 HTFKG--HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDR 362 (538)
Q Consensus 286 ~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg 362 (538)
..... +...+.+++|+|+ +.++++|+.||.|++||++.. .+..+..+.. ....++++|+++ ++++|+.|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~----~~~~~~~h~~--~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGK----ELWNLRMHKK--KVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp EEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSC----BCCCSBCCSS--CEEEEEECTTCSSEEEEEETTS
T ss_pred EEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcc----eeEEEecccc--eEEeeeecCCCceEEEEecCcc
Confidence 33333 3346789999985 568899999999999998642 2222223322 223457777766 888999999
Q ss_pred cEEEEECCCCceeEE---ecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCc----eEEEEEEc
Q 009274 363 TIKAWSLLDGTLSCT---MSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA----VSSVLSLT 433 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~---~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~ 433 (538)
.|++||+++.+.... ..+|...|++++|+ +.+|++++.|+.|++||+++++....+..+.... ......++
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 999999988765443 35799999999999 5699999999999999999998777665432210 11113567
Q ss_pred CCCCEEEEEe------------CCCcEEEEeCC--cceeee-ccccceEEEE---EeCCCEEEEEeCCCeEEEEecCCCe
Q 009274 434 AVQHTLVVSH------------ESGSIKVWRND--KFMKSM-QTHKGSVFAV---FLEGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 434 ~~~~~l~~~~------------~dg~i~iwd~~--~~~~~~-~~h~~~v~~~---~~~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
+++..+++++ .++.|++||.. +.+..+ .+|...|.++ +++|++|++|+ |+.|+|||+++++
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 7777666664 23679999954 445554 4677777765 34899999876 8899999998876
Q ss_pred e
Q 009274 496 F 496 (538)
Q Consensus 496 ~ 496 (538)
.
T Consensus 433 ~ 433 (435)
T 4e54_B 433 T 433 (435)
T ss_dssp -
T ss_pred e
Confidence 4
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=237.82 Aligned_cols=273 Identities=10% Similarity=0.078 Sum_probs=202.1
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc---eEEEEecC------------------------------------
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---HVHTFKGH------------------------------------ 291 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h------------------------------------ 291 (538)
.++.+++|+ |++|+++ .++.|++||+.+++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899998 7755555 57899999999888 66665533
Q ss_pred ------------------CcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc--CCCCCcceeeecccCCceeeeEEEEeec
Q 009274 292 ------------------DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS--FPLGHEPLKKWNEEKDWRYSGIHALTTS 351 (538)
Q Consensus 292 ------------------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (538)
.+.|.+++|+|++..++++++.||.|++||+. ++.....+.... .......++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---FSKRPNAISIAED 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---CSSCEEEEEECTT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---CCCCceEEEEcCC
Confidence 33799999999877667999999999999998 554433332211 1122335688899
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeE----EecCCCCCeEEEEEe-C---C-EEEEEecCCcEEEEECCCCceeEEEecCC
Q 009274 352 GRYLYTGSGDRTIKAWSLLDGTLSC----TMSGHKSAVSTLAVC-N---G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDS 422 (538)
Q Consensus 352 ~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~-~---~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 422 (538)
+++|++|+.||.|++|++.+++... .+.+|...|++++|+ + + +|++|+.|+.|++||+++++.+..+...+
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 9999999999999999998877554 778899999999999 4 4 89999999999999999999888755444
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccc-------------------------cceEEEEEe--C
Q 009274 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTH-------------------------KGSVFAVFL--E 473 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h-------------------------~~~v~~~~~--~ 473 (538)
...+.. ++|+ ++++|++++.|+.|++||.. +.+..+..+ ...+.++.+ +
T Consensus 241 ~~~v~~-~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 241 KHFVSS-ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SSCEEE-EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCceEE-EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 555555 6899 99999999999999999964 345555422 345777776 7
Q ss_pred CCEEEEEe-CCCeEEEEec--CCC---eeEeeeecCCcccCCCceEEEEEe-CCEEEEEEC-------CCeEEEEEcC
Q 009274 474 GKWLFTGG-WDKTVSVQEL--AGD---EFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCA-------DRTVKVYYYG 537 (538)
Q Consensus 474 ~~~l~sgs-~dg~v~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~-------dg~v~vw~~~ 537 (538)
+++|++++ .|+.|++|++ ..+ ........ + ..+..+.+. ++.+++.+. +..|.+|.+.
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-----~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-----P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-----S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEecc-----C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99999999 8999999999 443 33222221 1 234555554 444555433 4568888763
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=240.82 Aligned_cols=254 Identities=17% Similarity=0.191 Sum_probs=200.3
Q ss_pred eecCCeEEEEE-------------eecCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCc
Q 009274 237 GLSKGNVKFKD-------------LQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-------SHVHTFKGHDH 293 (538)
Q Consensus 237 ~~~~~~~~i~~-------------l~~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~ 293 (538)
+..+|.+.+|+ +.+|.+.|++++|+ +++|++|+.||+|++||+.++ +.+..+.+|..
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 45566777775 45799999999997 789999999999999999987 67889999999
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeee--cccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW--NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 371 (538)
.|.+++|+|++..++++++.||.|++||+.++... ..+ ..+. ......++++++++|++++.||.|++||+++
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV---LTLGPDVHP--DTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE---EEECTTTCC--SCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc---EEEecCCCC--CceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 99999999988789999999999999999865432 222 2222 2234567888999999999999999999999
Q ss_pred CceeEEe-cCCCCC-eEEEEEe--CCEEEEE---ecCCcEEEEECCCCce-eEEEecCCCCceEEEEEEcCCCCEEEE-E
Q 009274 372 GTLSCTM-SGHKSA-VSTLAVC--NGVLYSG---SRDGTIRLWSLSDHSL-LTVLEEDSSGAVSSVLSLTAVQHTLVV-S 442 (538)
Q Consensus 372 ~~~~~~~-~~h~~~-v~~l~~~--~~~l~s~---s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 442 (538)
++.+..+ .+|.+. +.++.|+ +.++++| +.|+.|++||+++++. +......+...+.. ++++|+++++++ |
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 208 GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL-PFFDPDTNIVYLCG 286 (402)
T ss_dssp TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE-EEEETTTTEEEEEE
T ss_pred CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE-EEEcCCCCEEEEEE
Confidence 9999988 788876 8999999 3377777 6899999999998765 44444333444444 699999999875 5
Q ss_pred eCCCcEEEEeCCc--c-eeeecc--ccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEe
Q 009274 443 HESGSIKVWRNDK--F-MKSMQT--HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEE 498 (538)
Q Consensus 443 ~~dg~i~iwd~~~--~-~~~~~~--h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~ 498 (538)
+.||.|++||... . ...+.. |...+.+++| ++.++++ .++.+++|++.++....
T Consensus 287 ~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~ 347 (402)
T 2aq5_A 287 KGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEP 347 (402)
T ss_dssp TTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEE
T ss_pred cCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEEE
Confidence 5799999999543 2 445544 4588888887 6666654 56799999998876543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=231.63 Aligned_cols=277 Identities=11% Similarity=0.124 Sum_probs=195.1
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
.+..+.+|.+.|++++|+ +++|++|+.|+ +++||+++++.......+ .+..+.+.++++.++++++.|++|++||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 455678999999999999 88999888764 889999887766554433 4778888887776768888999999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEeCCEEEE--E
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVCNGVLYS--G 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s--~ 398 (538)
+.+++....+. .. ..+.++..+++.++++. |+.|++||+.++ +.+..+.. +...++++.+++++ |
T Consensus 88 ~~~~~~~~~~~---~~-----~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg 155 (355)
T 3vu4_A 88 DVKKQDVSRIK---VD-----APVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNE 155 (355)
T ss_dssp TTTTEEEEEEE---CS-----SCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEES
T ss_pred CCCCcEEEEEE---CC-----CceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCC
Confidence 98765433222 11 13556666677666654 789999999988 77666654 44445556676666 5
Q ss_pred ecCCcEEEEECCCCc----------------eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCc-EEEEeCC--cceee
Q 009274 399 SRDGTIRLWSLSDHS----------------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS-IKVWRND--KFMKS 459 (538)
Q Consensus 399 s~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~--~~~~~ 459 (538)
+.||.|++||+++++ .+..+..| ...+.+ ++|+|++++|++|+.|++ |++||.. +.+..
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~-~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKM-VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCC-SSCEEE-EEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEE-EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 889999999999865 15566655 444444 799999999999999998 9999964 56777
Q ss_pred ec-c-ccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCC-------------------cccCCCceEEEE
Q 009274 460 MQ-T-HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG-------------------AIPCGSVITALL 516 (538)
Q Consensus 460 ~~-~-h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 516 (538)
+. + |...|.+++| ++++|++++.|++|++||+............. .........+.+
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 77 5 9999999988 89999999999999999997653211111000 000011123334
Q ss_pred EeCC-EEEEEECCCeEEEEEcC
Q 009274 517 YWQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 517 ~~~~-~l~sg~~dg~v~vw~~~ 537 (538)
.+++ .+++++.||.+++|++.
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEEE
Confidence 4555 58889999999999863
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=260.34 Aligned_cols=243 Identities=15% Similarity=0.243 Sum_probs=194.3
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC--CCceEEEEecCCcCeEEEEEecCC-CCEEEEEcCCCcEEEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVW 320 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vw 320 (538)
..+.+|.++|++++|+ ++++++|+.||+|++||+. +++....+.+|.+.|.+++|+++. +.++++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 3578999999999998 8999999999999999997 567788899999999999998753 6789999999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeec--CCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEeC----
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVCN---- 392 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~---- 392 (538)
|+.++... .......+. ......+++|+ ++.+++|+.||.|++||++++. ....+.+|...|.+++|++
T Consensus 83 d~~~~~~~-~~~~~~~h~--~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 83 KEENGRWS-QIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEETTEEE-EEEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred ECCCCccc-ccccccCCC--CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 99875311 222222222 22345678888 8999999999999999998873 4456678999999999984
Q ss_pred -----------CEEEEEecCCcEEEEECCCCc----eeEEEecCCCCceEEEEEEcCC---CCEEEEEeCCCcEEEEeCC
Q 009274 393 -----------GVLYSGSRDGTIRLWSLSDHS----LLTVLEEDSSGAVSSVLSLTAV---QHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 393 -----------~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~ 454 (538)
.++++|+.||.|++||++++. ....+..| ...+.. ++|+|+ ++++++|+.||.|++||..
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~-l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRD-VAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEE-EEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEE-EEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 489999999999999998874 34444444 444444 799999 8999999999999999965
Q ss_pred c-------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCC
Q 009274 455 K-------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 455 ~-------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~ 493 (538)
. .......|...|.+++| +++++++|+.||.|++||+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 4 23344558888988877 899999999999999999984
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-27 Score=236.95 Aligned_cols=268 Identities=9% Similarity=0.116 Sum_probs=202.8
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEEe--------------------ecCC------------CcEEEEEEc--C--
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDL--------------------QGHR------------DCVTGLAVG--G-- 262 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l--------------------~~h~------------~~V~~l~~~--~-- 262 (538)
...|.++.+++++..++++..++.+++|++ .+|. +.|++++|+ +
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 456888999999999999999999998874 4687 889999999 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceE---------------------------------------EE-EecCCcCeEEEEEec
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHV---------------------------------------HT-FKGHDHKVMAVVYVD 302 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~l~~~~ 302 (538)
.+|++++.|++|++||+.+++.. .. ..+|...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 69999999999999998764432 12 357999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCccee-----eecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCce--
Q 009274 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLK-----KWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTL-- 374 (538)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~-- 374 (538)
+ +.++++| .|+.|++||+.+........ ....+. .....++++|++ ++|++|+.||.|++||+++++.
T Consensus 188 ~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 188 D-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT--EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp T-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC--CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred C-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccC--cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 5 5577888 79999999998432111100 111121 223456888888 8999999999999999999887
Q ss_pred --eEEecCCCC------------CeEEEEEe--CCEEEEEecCCcEEEEECCC-CceeEEEecCCCCce-----------
Q 009274 375 --SCTMSGHKS------------AVSTLAVC--NGVLYSGSRDGTIRLWSLSD-HSLLTVLEEDSSGAV----------- 426 (538)
Q Consensus 375 --~~~~~~h~~------------~v~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----------- 426 (538)
+..+.+|.. .|.+++|+ +.+|++++. +.|++||+++ ++.+..+..+.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 788888876 89999999 558888888 9999999997 888877776532110
Q ss_pred --EEEEEEcCCCCEEEEEeCCCcEEEEeCCcc-eeeecc---------------------------------ccceEEEE
Q 009274 427 --SSVLSLTAVQHTLVVSHESGSIKVWRNDKF-MKSMQT---------------------------------HKGSVFAV 470 (538)
Q Consensus 427 --~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~---------------------------------h~~~v~~~ 470 (538)
...++|+|++++|++|+.||.|++||.... ...+.. +...|.++
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 011589999999999999999999996532 112222 23456667
Q ss_pred Ee--CCCEEEEEeCCCeEEEEecC
Q 009274 471 FL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 471 ~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
+| ++++|++++.++ +++|..+
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 66 899999998775 7777643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-26 Score=222.51 Aligned_cols=245 Identities=18% Similarity=0.157 Sum_probs=184.3
Q ss_pred EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc-ceeeecccCCceeeeEEEEee--cCCEEEEeeCCC
Q 009274 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE-PLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDR 362 (538)
Q Consensus 286 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg 362 (538)
..+.+|.+.|.+++|+|+ +.++++|+.||.|++||+.+..... ....+..+.. ....+++++ ++++|++|+.||
T Consensus 5 ~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS--SIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS--CEEEEEECCGGGCSEEEEEETTS
T ss_pred ccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC--cEEEEEEcCCCCCCEEEEEcCCC
Confidence 346789999999999995 5588999999999999998654332 2233333322 223456777 588999999999
Q ss_pred cEEEEECCCC---------ceeEEecCCCCCeEEEEEe----CCEEEEEecCCcEEEEECCCCceeEEEec---------
Q 009274 363 TIKAWSLLDG---------TLSCTMSGHKSAVSTLAVC----NGVLYSGSRDGTIRLWSLSDHSLLTVLEE--------- 420 (538)
Q Consensus 363 ~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------- 420 (538)
.|++||++++ +.+..+.+|...|.+++|+ +.++++++.|+.|++||+++++.+..+..
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999999887 5577888999999999999 34899999999999999998875443321
Q ss_pred ---CCCCceEEEEEEcCC---CCEEEEEeCCCcEEEEeCCc----ceeeeccccceEEEEEe--CC----CEEEEEeCCC
Q 009274 421 ---DSSGAVSSVLSLTAV---QHTLVVSHESGSIKVWRNDK----FMKSMQTHKGSVFAVFL--EG----KWLFTGGWDK 484 (538)
Q Consensus 421 ---~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~----~~~~~~~h~~~v~~~~~--~~----~~l~sgs~dg 484 (538)
.+...+. .+.++|+ +.++++++.|+.+.+|+... ....+.+|...|.++.+ ++ ++|++|+.||
T Consensus 162 ~~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 162 PPANHLQSDF-CLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCSSCSCCCE-EEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred ccCCccccee-EEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 2223333 4689987 89999999999998887432 36677889999999988 55 7999999999
Q ss_pred eEEEEecCCCee--------------------------------------------EeeeecCCcccCCCceEEEEE-eC
Q 009274 485 TVSVQELAGDEF--------------------------------------------EEDVIPTGAIPCGSVITALLY-WQ 519 (538)
Q Consensus 485 ~v~iwd~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~ 519 (538)
.|++||+..... ....... .+...+..+.+ ++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD---DHNGEVWSVSWNLT 317 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEEC---TTSSCEEEEEECSS
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe---cccccEEEEEEcCC
Confidence 999999976421 0000111 13345666655 45
Q ss_pred C-EEEEEECCCeEEEEEcC
Q 009274 520 G-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 520 ~-~l~sg~~dg~v~vw~~~ 537 (538)
+ .|++|+.||.|++|++.
T Consensus 318 ~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp SCCEEEEETTSCEEEEEEC
T ss_pred CCEEEEecCCCcEEEEecC
Confidence 4 58899999999999986
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=216.92 Aligned_cols=267 Identities=14% Similarity=0.128 Sum_probs=182.3
Q ss_pred EEEEEeCCCcEEEEeCCCC---ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcE-EEEEccCCCCCcceeeecccCC
Q 009274 264 FLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI-FVWSFSFPLGHEPLKKWNEEKD 339 (538)
Q Consensus 264 ~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~~~~~~~ 339 (538)
.+++++ ...|++|+..++ +.+++++.|+.+|..+.+.|+..+++..+=.+=.+ .++-+.................
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 566676 559999999998 88999999999999999999766655443211111 1222221111000000000000
Q ss_pred ceeeeEEEEeecCCEEEEee--CCCcEEEEEC-CCCceeEEecCCCCCeEEEEEeC-----CEEEEEecCCcEEEEECCC
Q 009274 340 WRYSGIHALTTSGRYLYTGS--GDRTIKAWSL-LDGTLSCTMSGHKSAVSTLAVCN-----GVLYSGSRDGTIRLWSLSD 411 (538)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sg~--~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~iwd~~~ 411 (538)
+...+..+ ++++.+.+++ .|+.|++|++ .+++.+..+.+|...++.++|+. .+|++++.|++|++||+++
T Consensus 135 -~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T 212 (356)
T 2w18_A 135 -NIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT 212 (356)
T ss_dssp -EEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred -CeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence 11223333 3454555533 5999999999 45888888889999998888882 5999999999999999999
Q ss_pred CceeEEEecCCCC-ceEEEEEEcCCCCEE------------EEEeCCCcEEEEeCCc--ceeee-----ccccceEEEEE
Q 009274 412 HSLLTVLEEDSSG-AVSSVLSLTAVQHTL------------VVSHESGSIKVWRNDK--FMKSM-----QTHKGSVFAVF 471 (538)
Q Consensus 412 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~--~~~~~-----~~h~~~v~~~~ 471 (538)
+++++++..++.. .....++|+|++.++ ++|+.|++|++||..+ .+..+ .+|...+.+.+
T Consensus 213 Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 213 GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence 9999999765421 222335899999876 5688899999999554 33332 46777777777
Q ss_pred eCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceE-EEEEeCCE-EEEEECCCeEEEEEcC
Q 009274 472 LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVIT-ALLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 472 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
+++.++++|+.|++|+|||+.+++....+... ...++. +.+.+|+. |++|+.|++|+|||+.
T Consensus 293 ~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH----~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 293 VKDHCAAAILTSGTIAIWDLLLGQCTALLPPV----SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EETTEEEEEETTSCEEEEETTTCSEEEEECCC------CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred cCCCEEEEEcCCCcEEEEECCCCcEEEEecCC----CCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 78999999999999999999999877765422 222344 45666665 8899999999999974
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-26 Score=224.13 Aligned_cols=265 Identities=15% Similarity=0.170 Sum_probs=209.8
Q ss_pred CCccceeeeeccC---cceeEEeecCCeEEEEEe-----------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC
Q 009274 218 DGADIDQARAAGG---VKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD 281 (538)
Q Consensus 218 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~l-----------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~ 281 (538)
....+.++.+.++ +..++++..++.+++|++ .+|.+.|++++|+ +++|++++.||.|++||+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 3456888889888 488999999999999875 4699999999998 88999999999999999999
Q ss_pred CceEEEEecCCcCeEEEEE--ecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee
Q 009274 282 FSHVHTFKGHDHKVMAVVY--VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359 (538)
Q Consensus 282 ~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 359 (538)
++.+. +..|...|.+++| ++ ++.++++++.||.|++||+++++....+.. +. .+.++.+.+..+++++
T Consensus 118 ~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 118 NQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQL---PE-----RCYCADVIYPMAVVAT 187 (368)
T ss_dssp TEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEEC---SS-----CEEEEEEETTEEEEEE
T ss_pred CCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEec---CC-----CceEEEecCCeeEEEe
Confidence 88776 5669999999999 55 456789999999999999987654433332 21 2556677788999999
Q ss_pred CCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe--CC----EEEEEecCCcEEEEECCCC---ceeEEEecCCCCc---
Q 009274 360 GDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC--NG----VLYSGSRDGTIRLWSLSDH---SLLTVLEEDSSGA--- 425 (538)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~----~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~--- 425 (538)
.++.+++||++........ ..+...+.++.+. .. .+++++.|+.|++||++.. .....+..+....
T Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 9999999999876543332 2344455666654 32 3999999999999999987 4566666553210
Q ss_pred -------eEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecC
Q 009274 426 -------VSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 426 -------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~ 492 (538)
....++|+|++++|++++.||.|++||.. +.+..+..|...|.+++| ++++|++++.|+..+.|++.
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 23447999999999999999999999965 467788899999999988 89999999999866655543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=226.47 Aligned_cols=225 Identities=13% Similarity=0.049 Sum_probs=171.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC------CCcceeeec
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL------GHEPLKKWN 335 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~ 335 (538)
+.++++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+..... ....+....
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 7899999999999999999999988887 467788888875 8999999999999876321 112122222
Q ss_pred ccCCceeeeEEEEee--cCCEEEEeeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEe--CCEEEEEecCCcEEEEECC
Q 009274 336 EEKDWRYSGIHALTT--SGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLS 410 (538)
Q Consensus 336 ~~~~~~~~~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 410 (538)
.... .....++++| +++++++|+.||+|++||+++++...... .|...|.+++|+ +.++++|+.||.|++||++
T Consensus 122 ~~~~-~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 122 VDSA-NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp CCCS-SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred cCCC-CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 1111 1233457788 88999999999999999999999877664 455689999999 5599999999999999999
Q ss_pred CCcee-EEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc--eeeecc---ccceEE--EEEe--CCCEEEEE
Q 009274 411 DHSLL-TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQT---HKGSVF--AVFL--EGKWLFTG 480 (538)
Q Consensus 411 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~---h~~~v~--~~~~--~~~~l~sg 480 (538)
+++.+ ..+...|...+.. ++|+|++.+|++++ |+.|++||+++. ...+.. |...+. +++| ++++|+++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~-l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKE-VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp CTTSCCEECCCCTTSCEEE-EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred CCCCCccEEeccCCCCEEE-EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 99887 7777634555555 69999999999999 559999997643 233332 434433 3555 89999999
Q ss_pred eC-CCeEEEEecCCCe
Q 009274 481 GW-DKTVSVQELAGDE 495 (538)
Q Consensus 481 s~-dg~v~iwd~~~~~ 495 (538)
+. |+.+++|++....
T Consensus 279 s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKT 294 (343)
T ss_dssp ETTTTEEEEEEECTTT
T ss_pred cCCCCcEEEEEEcccc
Confidence 98 9999999996654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-26 Score=223.48 Aligned_cols=231 Identities=22% Similarity=0.291 Sum_probs=187.3
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe-----------ecCCCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCc-
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFS- 283 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-----------~~h~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~- 283 (538)
..+..+.+.+++..++++..++.+.+|++ .+|.+.|++++|+ +++|++|+.||.|++||+.+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 45778888899999999999999999975 3799999999997 7999999999999999999987
Q ss_pred -eEEEEecCCcCeEEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-----------
Q 009274 284 -HVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT----------- 350 (538)
Q Consensus 284 -~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 350 (538)
.+..+..|...|.+++|+|+. +.++++++.||.|++||+........... ..+. ......+++|
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHA--IGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-ECCT--TCEEEEEECCCC---------
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-cCCC--CceEEEEEcCccccccccccC
Confidence 778888899999999999864 67889999999999999987644333222 2222 1223456777
Q ss_pred --cCCEEEEeeCCCcEEEEECCCCc----eeEEecCCCCCeEEEEEe-C----CEEEEEecCCcEEEEECCCCce---eE
Q 009274 351 --SGRYLYTGSGDRTIKAWSLLDGT----LSCTMSGHKSAVSTLAVC-N----GVLYSGSRDGTIRLWSLSDHSL---LT 416 (538)
Q Consensus 351 --~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~-~----~~l~s~s~dg~i~iwd~~~~~~---~~ 416 (538)
+++++++|+.||.|++||+++++ ....+.+|...|.+++|+ + ++|++++.||.|++||++++.. ..
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 248 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 248 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee
Confidence 68899999999999999998764 456778899999999999 3 4899999999999999998752 22
Q ss_pred EEec-CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 009274 417 VLEE-DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 417 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 454 (538)
.... .+...+ ..++|+|++++|++++.||.|++||..
T Consensus 249 ~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 249 LLKEEKFPDVL-WRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSSSCCSSCE-EEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eeccccCCCcE-EEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 2222 123334 447999999999999999999999954
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=234.94 Aligned_cols=256 Identities=11% Similarity=0.067 Sum_probs=192.5
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (538)
.-...|.+++|+ |+++||++.|++|+ |...++.+ ++|...|.+++|+|++ .++.+.+|+.+ .
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg--------~~~~~~~~~~~---~ 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE--------FENKLDFELAQ---Q 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC--------CCCTTTTSCCC---S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC--------CcceEEEEeCC---C
Confidence 345889999999 99999999999999 76665544 7999999999999976 45555555543 2
Q ss_pred CcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-----CeEEEEEe--CCEEEEEec
Q 009274 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-----AVSTLAVC--NGVLYSGSR 400 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~~--~~~l~s~s~ 400 (538)
...+.. .+ ......++++|+|..|++++.||.|++||..+ ++..+. |.. .|.+++|+ +++|++|+.
T Consensus 77 ~~~~~~--~~--~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 77 NGLLNS--QP--VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SCSSTT--SC--SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred ceEeec--CC--CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 221111 11 13445679999999999999999999999544 666666 665 49999999 569999999
Q ss_pred CCcEEEEECCCCce-------eEEEe---cCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcce-----eee-cccc
Q 009274 401 DGTIRLWSLSDHSL-------LTVLE---EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM-----KSM-QTHK 464 (538)
Q Consensus 401 dg~i~iwd~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~-~~h~ 464 (538)
||+|++||+.++.. +.++. ..|...+.. ++|+|+| +++++.|+.|++||..... +++ .+|.
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s-VawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH-IVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE-EEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEE-EEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 99999999998863 56663 223455555 6999999 8889999999999964322 346 4788
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE--EeCCE-EEEEECCCeEEEEEcC
Q 009274 465 GSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL--YWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 465 ~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
..|.+++|.|+.|++++ +++|++||+.+++....... +...+....+ .+++. +++++.||+ ++|.+.
T Consensus 227 ~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~g----h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 227 RKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTG----SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECS----CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcC----CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999999778999997 69999999999887433321 1222333344 45665 777888999 999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=225.45 Aligned_cols=239 Identities=14% Similarity=0.107 Sum_probs=188.7
Q ss_pred cCCCcEEEEEEc--CCEE-EEEeCCCcEEEEeCC--CCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 250 GHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLK--DFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
+|.+.|++++|+ +++| ++|+.||+|++||+. +++.+..+. .|...|.+++|+|++ .++++|+.||.+++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEec
Confidence 345579999999 7885 899999999999999 888888886 577899999999954 57799999999999999
Q ss_pred cCCCCCc-ceeeecccCCceeeeEEEEeec---CCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CCEEE
Q 009274 323 SFPLGHE-PLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NGVLY 396 (538)
Q Consensus 323 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~~l~ 396 (538)
.+..... ....+..+.. ....++++|+ +++|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ +++|+
T Consensus 179 ~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~ 256 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVS--MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLL 256 (450)
T ss_dssp TSCCCSSCCCCCSEECSS--CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEE
T ss_pred CCcccccccceeeecccC--ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEE
Confidence 8766543 2223222322 2335688999 88999999999999999999998887 56899999999998 66999
Q ss_pred EEecCCcEEEEECCCCceeEEEecCC-----------------------CCceEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 009274 397 SGSRDGTIRLWSLSDHSLLTVLEEDS-----------------------SGAVSSVLSLTAVQHTLVVSH-ESGSIKVWR 452 (538)
Q Consensus 397 s~s~dg~i~iwd~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd 452 (538)
+++.|+.|++||+++++.+..+..+. .......++++|+++++++++ .|+.|++||
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 99999999999999999888876321 112234478999999999999 899999999
Q ss_pred C--C-----cceeeeccccceEEEEEeC-CCEEEEEeC-------CCeEEEEecC
Q 009274 453 N--D-----KFMKSMQTHKGSVFAVFLE-GKWLFTGGW-------DKTVSVQELA 492 (538)
Q Consensus 453 ~--~-----~~~~~~~~h~~~v~~~~~~-~~~l~sgs~-------dg~v~iwd~~ 492 (538)
. . +.+..+..| ..+.++++. +..+++.+. +..|.+|.+.
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8 2 245566777 889999883 344554433 4557888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=222.35 Aligned_cols=259 Identities=11% Similarity=0.038 Sum_probs=193.8
Q ss_pred cCcceeEEeecCCeEEEEEeecCC-------CcEEEEEEcCCEEEEEeCCCcEEEEeCC---------CCceEEEEe-cC
Q 009274 229 GGVKDLVNGLSKGNVKFKDLQGHR-------DCVTGLAVGGGFLFSSSFDKSIHVWSLK---------DFSHVHTFK-GH 291 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~l~~h~-------~~V~~l~~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~~-~h 291 (538)
.++..++++..++.+++|++.... ..|.++.++.. +++++.|++|++|+.. +++.+..+. +|
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 124 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence 456788999999999999986543 44555566655 9999999999999665 555555555 67
Q ss_pred CcCeEEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECC
Q 009274 292 DHKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (538)
Q Consensus 292 ~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~ 370 (538)
.+.|.+++|+|. ++.++++++.||+|++||++++.. ......+.. ......+++|++.++++|+.||.|++||++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSS-CCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCC-CceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 789999999981 345789999999999999987654 222212221 223467899999999999999999999999
Q ss_pred CCcee-EEecC-CCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEec---CCCCceEEEEEEcCCCCEEEEEe
Q 009274 371 DGTLS-CTMSG-HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE---DSSGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 371 ~~~~~-~~~~~-h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~ 443 (538)
+++.+ ..+.. |.++|++++|+ +.+|++++ |+.|++||+++++....+.. +........++|+|++++|++++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 99987 78887 99999999999 45888888 55999999999877654432 11110113479999999999999
Q ss_pred C-CCcEEEEeCCcceeeeccccceEEEEEe-----CCCEEEEEeCCCeEEEEecCCCe
Q 009274 444 E-SGSIKVWRNDKFMKSMQTHKGSVFAVFL-----EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 444 ~-dg~i~iwd~~~~~~~~~~h~~~v~~~~~-----~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
. |+.+++|+..+....+.. .++..+.+ +...+++++.||.++++-.....
T Consensus 280 ~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 280 NESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp TTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred CCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence 8 999999996543333332 34444443 56789999999999988765554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-25 Score=217.19 Aligned_cols=258 Identities=13% Similarity=0.170 Sum_probs=193.9
Q ss_pred CccceeeeeccCcceeEEeecCCeEEEEEeec-------CCCcEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEE
Q 009274 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDLQG-------HRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-------h~~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
...+.++.+++++..++++..++ +++|++.. +...+..+++. ++.+ ++++.|++|++||..+++.+..+
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~ 97 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI 97 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE
Confidence 34578899999999888887664 67887432 22346666666 5655 67888999999999999999988
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC-CCCcceeeecccCCceeeeEEEEeecCCEEEE--eeCCCcEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP-LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT--GSGDRTIK 365 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--g~~dg~i~ 365 (538)
. |...|.++.|+++ .++.+ .|+.|++||+.+. +....+.. ...+.++++ +++++ |+.||.|+
T Consensus 98 ~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--------~~~~~~~s~--~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 98 K-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--------FGGVCEFSN--GLLVYSNEFNLGQIH 162 (355)
T ss_dssp E-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--------EEEEEEEET--TEEEEEESSCTTCEE
T ss_pred E-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc--------CCceEEEEc--cEEEEeCCCcCcEEE
Confidence 7 6779999999763 33333 4789999999876 44433332 233556666 65655 68999999
Q ss_pred EEECCCCc----------------eeEEecCCCCCeEEEEEe--CCEEEEEecCCc-EEEEECCCCceeEEEe-cCCCCc
Q 009274 366 AWSLLDGT----------------LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGT-IRLWSLSDHSLLTVLE-EDSSGA 425 (538)
Q Consensus 366 iwd~~~~~----------------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~~~~~~ 425 (538)
+||+++++ .+..+.+|.+.|++++|+ +.+|++|+.|++ |++||+++++.+..+. +.+...
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~ 242 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD 242 (355)
T ss_dssp EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc
Confidence 99998865 277889999999999999 559999999998 9999999999999998 324555
Q ss_pred eEEEEEEcCCCCEEEEEeCCCcEEEEeCCcce----eeecc---------------------ccceEEEEEe--CCCEEE
Q 009274 426 VSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM----KSMQT---------------------HKGSVFAVFL--EGKWLF 478 (538)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---------------------h~~~v~~~~~--~~~~l~ 478 (538)
+.. ++|+|++++|++++.|++|++||..... ..+.. +......++| +++.|+
T Consensus 243 v~~-~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~ 321 (355)
T 3vu4_A 243 VVD-MKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV 321 (355)
T ss_dssp EEE-EEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred EEE-EEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence 555 6999999999999999999999965321 11111 1111133444 899999
Q ss_pred EEeCCCeEEEEecCC
Q 009274 479 TGGWDKTVSVQELAG 493 (538)
Q Consensus 479 sgs~dg~v~iwd~~~ 493 (538)
+++.||.+++|++..
T Consensus 322 ~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 322 VWPHTRMIETFKVVF 336 (355)
T ss_dssp EETTTTEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEc
Confidence 999999999999854
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-24 Score=211.01 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=190.6
Q ss_pred EEEEEeecCCCcEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEE
Q 009274 243 VKFKDLQGHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 319 (538)
..+..+.+|. .+.+++|+ ++++ ++++.|++|++||+.+++.+..+..+. .+.+++|+|++..++++++.++.|++
T Consensus 23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV 100 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEE
Confidence 3444556665 48999998 6666 677799999999999999999888665 89999999988877788888999999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEE-EEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEE-
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVL- 395 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l- 395 (538)
||+.+++....+ ..+. .....+++++++.+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|+ ++.+
T Consensus 101 ~d~~~~~~~~~~---~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 101 IDTTSNTVAGTV---KTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVY 173 (391)
T ss_dssp EETTTTEEEEEE---ECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEE
T ss_pred EECCCCeEEEEE---eCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEE
Confidence 999876433222 2222 12356788999866 78888999999999999998888765 456999998 4455
Q ss_pred EEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEe---CCCcEEEEeCC--cceeeeccccceEEEE
Q 009274 396 YSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH---ESGSIKVWRND--KFMKSMQTHKGSVFAV 470 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~--~~~~~~~~h~~~v~~~ 470 (538)
++++.|+.|++||+++++....+... .. ...++++|+++++++++ .++.|++||.. +.+..+..|.. +.++
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~~~~~~~--~~-~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 249 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVIDTVKVE--AA-PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI 249 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS--SE-EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEecC--CC-ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE
Confidence 67788999999999999888777643 22 34479999999999888 68999999965 45566666654 5666
Q ss_pred Ee--CCCEE-EEEeCCCeEEEEecCCCeeEeee
Q 009274 471 FL--EGKWL-FTGGWDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 471 ~~--~~~~l-~sgs~dg~v~iwd~~~~~~~~~~ 500 (538)
.+ +++++ ++++.|+.|++||+.+++.....
T Consensus 250 ~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 55 78877 67788999999999988766544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-25 Score=221.27 Aligned_cols=257 Identities=16% Similarity=0.230 Sum_probs=187.4
Q ss_pred EEEEeCCCCce-EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC-------CCcceeeecccCCceeeeE
Q 009274 274 IHVWSLKDFSH-VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL-------GHEPLKKWNEEKDWRYSGI 345 (538)
Q Consensus 274 i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~ 345 (538)
+..+...+++. ......|.+.|++++|+|+++.++++++.||.|++||+.... .......+..+.. ....
T Consensus 109 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~ 186 (430)
T 2xyi_A 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK--EGYG 186 (430)
T ss_dssp ---------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS--CCCC
T ss_pred cccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC--CeEE
Confidence 33343334433 244567999999999999878899999999999999998621 1222333333322 2234
Q ss_pred EEEeecCC-EEEEeeCCCcEEEEECCCCce-------eEEecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCC--
Q 009274 346 HALTTSGR-YLYTGSGDRTIKAWSLLDGTL-------SCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDH-- 412 (538)
Q Consensus 346 ~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~-- 412 (538)
+++++++. +|++|+.||.|++||+.++.. ...+.+|...|.+++|+ +.++++++.|+.|++||++++
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 57888888 999999999999999987432 45667899999999998 348999999999999999987
Q ss_pred -ceeEEEecCCCCceEEEEEEcCCCC-EEEEEeCCCcEEEEeCCc---ceeeeccccceEEEEEe--CC-CEEEEEeCCC
Q 009274 413 -SLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL--EG-KWLFTGGWDK 484 (538)
Q Consensus 413 -~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~h~~~v~~~~~--~~-~~l~sgs~dg 484 (538)
+.+..+..+ ...+. .++|+|++. ++++|+.||.|++||.+. ++..+..|...|.++.| ++ .+|++++.||
T Consensus 267 ~~~~~~~~~~-~~~v~-~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVDAH-TAEVN-CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEECC-SSCEE-EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEeecC-CCCeE-EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence 466666554 33444 479999887 788999999999999653 57788899999999988 55 5799999999
Q ss_pred eEEEEecCCCee------------EeeeecCCcccCCCceEEEEEe-CC--EEEEEECCCeEEEEEcC
Q 009274 485 TVSVQELAGDEF------------EEDVIPTGAIPCGSVITALLYW-QG--KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 485 ~v~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~--~l~sg~~dg~v~vw~~~ 537 (538)
.|++||+..... .....+.. +...+..+.+. ++ .+++++.||.|++|++.
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG---HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC---CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCC---CCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 999999986211 11111111 33445655554 44 58889999999999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-24 Score=212.30 Aligned_cols=258 Identities=14% Similarity=0.115 Sum_probs=197.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCcee
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRY 342 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 342 (538)
..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|++..++++++.|+.|++||+.+++....+ ..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---~~~~---~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PAGS---S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---ECSS---S
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---ECCC---C
Confidence 367888999999999999999999988775 48999999988777789999999999999866433222 2222 2
Q ss_pred eeEEEEeecCCEEE-EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEE-EEEecCCcEEEEECCCCceeEEE
Q 009274 343 SGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVL-YSGSRDGTIRLWSLSDHSLLTVL 418 (538)
Q Consensus 343 ~~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~ 418 (538)
....++++++++++ +++.++.|++||+.+++.+..+..+ ..+.+++|+ ++.+ ++++.|+.|++||+++++.+..+
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 33568889999775 5556799999999999988888754 568999999 3455 78888999999999999988887
Q ss_pred ecCCCCceEEEEEEcCCCCEE-EEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEe---CCCeEEEEe
Q 009274 419 EEDSSGAVSSVLSLTAVQHTL-VVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGG---WDKTVSVQE 490 (538)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs---~dg~v~iwd 490 (538)
..+.. . ..++++|+++.+ ++++.++.|++||... ....+. +...+.++.+ ++++|++++ .++.|++||
T Consensus 155 ~~~~~--~-~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 155 SVGRS--P-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp ECCSS--E-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred ecCCC--c-ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 76432 3 447999999887 5677889999999654 333333 4556777776 788888888 689999999
Q ss_pred cCCCeeEeeeecCCcccCCCceEEEEEeCC-EE-EEEECCCeEEEEEcC
Q 009274 491 LAGDEFEEDVIPTGAIPCGSVITALLYWQG-KL-FVGCADRTVKVYYYG 537 (538)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~sg~~dg~v~vw~~~ 537 (538)
+.+++........ ..+....+.+++ .+ ++++.|+.|++||+.
T Consensus 231 ~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 231 TGTNKITARIPVG-----PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp TTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEEecC-----CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 9988766554432 123334445566 45 467889999999975
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=244.16 Aligned_cols=246 Identities=13% Similarity=0.140 Sum_probs=182.3
Q ss_pred EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeec--CCEEEEeeCCCc
Q 009274 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRT 363 (538)
Q Consensus 286 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~ 363 (538)
..+.+|.+.|++++|+|++. ++++|+.||.|++||+..+.. ........+.. ....++++++ ++++++|+.||.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~--~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETH-KLIDTLTGHEG--PVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp -----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEE-EEEEEECCCSS--CEEEEEECCTTSCSEEEEEETTSC
T ss_pred eecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCC-ccceeccCCcC--ceEEEEecCCCCCCEEEEEeCCCe
Confidence 46789999999999999655 679999999999999874321 22333333322 2234566666 889999999999
Q ss_pred EEEEECCCCc--eeEEecCCCCCeEEEEEe----CCEEEEEecCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcC-
Q 009274 364 IKAWSLLDGT--LSCTMSGHKSAVSTLAVC----NGVLYSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTA- 434 (538)
Q Consensus 364 i~iwd~~~~~--~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~- 434 (538)
|++||+.+++ .+..+.+|...|++++|+ ++++++|+.||.|++||++++.. ...+..+ ...+.. +.|+|
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~-~~~v~~-l~~~p~ 156 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNS-ASWAPA 156 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-SSCEEE-EEECCC
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-CCceEE-EEecCc
Confidence 9999999887 677888999999999999 34999999999999999998743 3333333 344444 68888
Q ss_pred ------------CCCEEEEEeCCCcEEEEeCC------cceeeeccccceEEEEEe--C---CCEEEEEeCCCeEEEEec
Q 009274 435 ------------VQHTLVVSHESGSIKVWRND------KFMKSMQTHKGSVFAVFL--E---GKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 435 ------------~~~~l~~~~~dg~i~iwd~~------~~~~~~~~h~~~v~~~~~--~---~~~l~sgs~dg~v~iwd~ 491 (538)
++.++++|+.||.|++||.+ .....+.+|...|.++++ + +++|++|+.||.|++||+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 58999999999999999954 345677889999999987 5 889999999999999999
Q ss_pred CCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEEcC
Q 009274 492 AGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~~~ 537 (538)
.++.............+...+..+.+ +++ .+++|+.||.|++|++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 88642211111111113334444444 555 48889999999999985
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=224.73 Aligned_cols=250 Identities=11% Similarity=0.066 Sum_probs=188.2
Q ss_pred ceeeeeccCcceeEEeecCCeEEE----EEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCcCeE
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKF----KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVM 296 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i----~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~ 296 (538)
+..+.++++++.+++++.++.++- ..+++|...|.+++|+..- .++.+.+|+. +....+. .|...|.
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~---~~~~~~~~~~~~~V~ 89 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-----FENKLDFELA---QQNGLLNSQPVCYPR 89 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-----CCCTTTTSCC---CSSCSSTTSCSCCEE
T ss_pred EEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-----CcceEEEEeC---CCceEeecCCCCcEE
Confidence 667889999999999999998861 1257899999999998211 4555555543 3222333 4688999
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCC---ceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc
Q 009274 297 AVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD---WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (538)
Q Consensus 297 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 373 (538)
+++|+|++. ++++++.||.|++||... .+.... +.. .......+|+|+|++|++|+.||+|++||+.++.
T Consensus 90 ~vawSPdG~-~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 90 VCKPSPIDD-WMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp EEEECSSSS-CEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred EEEECCCCC-EEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 999999655 669999999999999543 222222 221 1123367899999999999999999999999875
Q ss_pred e-------eEEe----cCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCce---eEEEecCCCCceEEEEEEcCCCCE
Q 009274 374 L-------SCTM----SGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSL---LTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 374 ~-------~~~~----~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
. +.++ .+|.+.|.+++|+ ++ +++++.|+++++||+.++.. ..++...+...+.. ++|+ ++.
T Consensus 163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s-vaFs--g~~ 238 (588)
T 2j04_A 163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD-LKIV--DYK 238 (588)
T ss_dssp TTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC-EEEE--TTE
T ss_pred cccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE-EEEE--CCE
Confidence 3 5666 6788999999999 55 99999999999999988774 34564344444444 5777 688
Q ss_pred EEEEeCCCcEEEEeCCccee-eec-cccceEEEEEe----CCCEEEEEeCCCeEEEEecC
Q 009274 439 LVVSHESGSIKVWRNDKFMK-SMQ-THKGSVFAVFL----EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 439 l~~~~~dg~i~iwd~~~~~~-~~~-~h~~~v~~~~~----~~~~l~sgs~dg~v~iwd~~ 492 (538)
+++++ +++|++||...... .+. +|...+..+.+ ++..+++++.||+ ++|...
T Consensus 239 LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 239 VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99887 69999999654333 444 89999987766 6778999999999 999975
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=212.57 Aligned_cols=278 Identities=14% Similarity=0.111 Sum_probs=205.5
Q ss_pred EEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE-----EEecCCcCeEEEEEecCCCCEEEEEcCCC
Q 009274 243 VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH-----TFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 315 (538)
..+..+..+. .+.+++|+ +.++++++.|+.|++||+.+++... .+.+|...|.+++|++ ++.++++++.|+
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~ 191 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGT
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCC
Confidence 3445555554 45589998 5677777888999999999998887 3457889999999966 566889999999
Q ss_pred cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEE-EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C
Q 009274 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~ 392 (538)
.|++||+.+++....+. .+. ......+++++++.++ +++.|+.|++||+++++.+..+..+ ..+.+++|+ +
T Consensus 192 ~v~~~d~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g 265 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVD---LTG--KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDG 265 (433)
T ss_dssp EEEEEETTTCCEEEEEE---CSS--SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTS
T ss_pred EEEEEECCCceEEEEEc---CCC--CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCC
Confidence 99999998654333222 221 1223568889998775 5557999999999999988887754 558999998 4
Q ss_pred CEEEEEe--------cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE-EEEeCCCcEEEEeCCc--ceeeec
Q 009274 393 GVLYSGS--------RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL-VVSHESGSIKVWRNDK--FMKSMQ 461 (538)
Q Consensus 393 ~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~--~~~~~~ 461 (538)
+.+++++ .|+.|++||+++++....+... .... .++++|+++.+ ++++.|+.|++||..+ ....+.
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~-~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKR-HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEE-EEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--CCcc-eEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 4888887 4889999999999877766432 2233 36899999755 5668999999999653 344443
Q ss_pred cccceEEEEEe--CCCEEEEEeC---------------CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EE
Q 009274 462 THKGSVFAVFL--EGKWLFTGGW---------------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KL 522 (538)
Q Consensus 462 ~h~~~v~~~~~--~~~~l~sgs~---------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l 522 (538)
+...+.++++ +++++++++. ||.|++||+.+++........ . .+..+.+ +++ .|
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-----~-~~~~~~~s~dg~~l 415 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-----N-QPTGLDVSPDNRYL 415 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-----S-SEEEEEECTTSCEE
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-----C-CCceEEEcCCCCEE
Confidence 5667777776 7888888876 579999999998876655431 2 3344444 565 46
Q ss_pred EEEEC-CCeEEEEEcCC
Q 009274 523 FVGCA-DRTVKVYYYGK 538 (538)
Q Consensus 523 ~sg~~-dg~v~vw~~~~ 538 (538)
++++. |+.|++|+++.
T Consensus 416 ~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 416 VISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEETTTTEEEEEEETT
T ss_pred EEEECCCCeEEEEEecC
Confidence 66664 99999999863
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-24 Score=201.94 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=142.6
Q ss_pred CCCcEEEEeC-CCCceEEEEecCCcCeEEEEEec--CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCC-ceeeeE
Q 009274 270 FDKSIHVWSL-KDFSHVHTFKGHDHKVMAVVYVD--EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD-WRYSGI 345 (538)
Q Consensus 270 ~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~ 345 (538)
.|+.|++|++ .+++.+..+.+|...+..++|++ .++.++++++.|++|++||+.+++....+.. +.. ......
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g---~~~~v~~v~~ 231 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI---DDSYQASVCH 231 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC---CC---CCCEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC---CCcceeeeEE
Confidence 4999999999 55888899999999998888887 4567999999999999999998765555432 211 112223
Q ss_pred EEEeecCCEE------------EEeeCCCcEEEEECCCCceeEEe-----cCCCCCeEEEEEeCCEEEEEecCCcEEEEE
Q 009274 346 HALTTSGRYL------------YTGSGDRTIKAWSLLDGTLSCTM-----SGHKSAVSTLAVCNGVLYSGSRDGTIRLWS 408 (538)
Q Consensus 346 ~~~~~~~~~l------------~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd 408 (538)
.+|+|++.++ ++|+.|++|++||..+++.+..+ .+|...+.+..+++.++++++.|++|++||
T Consensus 232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWD 311 (356)
T ss_dssp EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEE
Confidence 4788988865 66889999999999999887765 477777777777788999999999999999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 009274 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (538)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 453 (538)
+.+++++.++..|...... .++|+|||++|++|+.|++|++||.
T Consensus 312 l~tGk~l~tL~gH~~~vvs-~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWS-FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCC-EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEE-EEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999876544443 3699999999999999999999984
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-25 Score=217.26 Aligned_cols=227 Identities=10% Similarity=0.026 Sum_probs=148.6
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCCCc--ceeeecccCCceeeeEEEEee--------cCCEEEEeeCCCcEEEEECCC
Q 009274 302 DEDQPLCISGDSGGGIFVWSFSFPLGHE--PLKKWNEEKDWRYSGIHALTT--------SGRYLYTGSGDRTIKAWSLLD 371 (538)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~l~sg~~dg~i~iwd~~~ 371 (538)
+.+..++++++.|++|++||.+++.... .+.....|.. ....++|+| ++++|++|+.|++|++||+++
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~--~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN--FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS--CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC--ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 3345688999999999999998764322 1222333333 223346665 788999999999999999999
Q ss_pred CceeEEecCCCCCeEEEEEeC---CEEEEEecCCcEEEEECCCCceeEEEec------------------------CCCC
Q 009274 372 GTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEE------------------------DSSG 424 (538)
Q Consensus 372 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------~~~~ 424 (538)
+.++..+.+|..+|.+++|++ .+|++++.|++|++||+++++....... .+..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 988888888999999999993 3799999999999999998765433221 1122
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEE-------------------Ee---CCCEEEEE
Q 009274 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAV-------------------FL---EGKWLFTG 480 (538)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~-------------------~~---~~~~l~sg 480 (538)
.+..+..+.++++.+++++.|+++++||.. +....+..|...+..+ .+ ++.++++|
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 333433456899999999999999999954 2333344443333221 11 44577888
Q ss_pred eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCE-EEEEECCCeEEEEEc
Q 009274 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 481 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~sg~~dg~v~vw~~ 536 (538)
+.||.|++||+.+++....... +...+..+.| ++++ |++++.|| +.+|++
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~-----~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQ-----LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEE-----CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEecC-----CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 8999999999998765443332 2334555554 5776 55566555 666554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=219.96 Aligned_cols=224 Identities=13% Similarity=0.133 Sum_probs=158.0
Q ss_pred eeccCcceeEEeecCCeEEEEE--------------eecCCCcEEEEEEc----------CCEEEEEeCCCcEEEEeCCC
Q 009274 226 RAAGGVKDLVNGLSKGNVKFKD--------------LQGHRDCVTGLAVG----------GGFLFSSSFDKSIHVWSLKD 281 (538)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~--------------l~~h~~~V~~l~~~----------~~~l~s~s~dg~i~iwd~~~ 281 (538)
........++++..++.+++|+ +.||.+.|++++|+ +++|+||+.|++|+|||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 3445566788899999999986 35899999999995 57999999999999999999
Q ss_pred CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecc---------------------cCCc
Q 009274 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE---------------------EKDW 340 (538)
Q Consensus 282 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------~~~~ 340 (538)
+..+..+..|...|.+++|+|++..++++++.||+|++||+.++........... ....
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 8888888899999999999998888999999999999999987654322211100 0111
Q ss_pred eeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEE------------------Ee---CC-EEEEE
Q 009274 341 RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA------------------VC---NG-VLYSG 398 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~------------------~~---~~-~l~s~ 398 (538)
....+....++++.+++++.|+++++||+.+++....+..|...+..+. ++ ++ ++++|
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 1122223347899999999999999999988877666655554443332 22 23 66778
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
+.||+|++||+.+++.......+.. .+.. ++|+|+|++|++++.+| +.+|+
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~~~-~V~s-vafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQLGM-PIVD-FCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEECSS-CEEE-EEECTTSSEEEEEESSE-EEEEE
T ss_pred CCCCEEEEEECCCCcEEEEecCCCC-cEEE-EEEcCCCCEEEEEeCCC-eEEEE
Confidence 8999999999999988877766543 4444 79999999999998776 55554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=210.43 Aligned_cols=259 Identities=15% Similarity=0.158 Sum_probs=202.6
Q ss_pred eeeeccCcceeEEeecCCeEEEEEe--------------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEE
Q 009274 224 QARAAGGVKDLVNGLSKGNVKFKDL--------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT 287 (538)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~l--------------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~ 287 (538)
.+.+++++..++++..++.+.+|++ .+|.+.|.+++|+ +.++++++.|+.|++||+++++.+..
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE
Confidence 4556665555566666667777763 3788899999997 88999999999999999999999999
Q ss_pred EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee--------
Q 009274 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-------- 359 (538)
Q Consensus 288 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-------- 359 (538)
+..|...+.+++|+|++..++++++.|+.|++||+.+++.. ...... ......+++++++.+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI---RKTDKI---GLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE---EECCCC---SEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE---EEecCC---CCceEEEEcCCCCEEEEEECCCCcccc
Confidence 99999999999999988877788889999999999865432 222221 1234568889999998888
Q ss_pred CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 009274 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (538)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (538)
.|+.|++||+++++.+..+ .|...+.+++|+ ++ ++++++.|+.|++||+.+++....+... ..+. .++++|++
T Consensus 281 ~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~-~~~~s~dg 356 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF--DKPN-TIALSPDG 356 (433)
T ss_dssp CCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEE-EEEECTTS
T ss_pred CCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC--CCCC-eEEEcCCC
Confidence 5889999999998877766 356688999998 33 5567789999999999999888777632 3333 47999999
Q ss_pred CEEEEEeC---------------CCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeC-CCeEEEEecCC
Q 009274 437 HTLVVSHE---------------SGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGW-DKTVSVQELAG 493 (538)
Q Consensus 437 ~~l~~~~~---------------dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~-dg~v~iwd~~~ 493 (538)
+++++++. ||.|++||..+ ....+.. ...+.++++ ++++|++++. |+.|++|++++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 99988876 57999999643 4555554 346777766 8899988875 99999999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-20 Score=190.47 Aligned_cols=303 Identities=12% Similarity=0.074 Sum_probs=207.5
Q ss_pred cCcceeEEeecCCeEEEEE---------ee-cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeC--CCCceEEEEecCCcC
Q 009274 229 GGVKDLVNGLSKGNVKFKD---------LQ-GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL--KDFSHVHTFKGHDHK 294 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~---------l~-~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~h~~~ 294 (538)
+++..+++...++.+.+|+ +. +|. +.+++|+ ++++++++.|++|++||+ .+++.+.++.. ...
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~ 223 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIE 223 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCC
Confidence 3444455555555555554 44 333 8899998 899999999999999999 88999988884 456
Q ss_pred eEEEEEec----CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecc-------cCCceeeeEEEEeecCC-EEEEeeCCC
Q 009274 295 VMAVVYVD----EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE-------EKDWRYSGIHALTTSGR-YLYTGSGDR 362 (538)
Q Consensus 295 v~~l~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~l~sg~~dg 362 (538)
+..++|+| ++..++++...+++|.+||..+.+....+..... +.. .......+++++. ++++...++
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~-~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE-PRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC-CCEEEEEECSSSSEEEEEETTTT
T ss_pred cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccC-CceEEEEECCCCCEEEEEECCCC
Confidence 79999999 7776555555699999999887655444332110 011 1122346777665 677778899
Q ss_pred cEEEEECCCCceeE--EecCCCCCeEEEEEe--CCEEEEE-ecCCcEEEEECCCCceeEEEecC---CCCceEEEEEEcC
Q 009274 363 TIKAWSLLDGTLSC--TMSGHKSAVSTLAVC--NGVLYSG-SRDGTIRLWSLSDHSLLTVLEED---SSGAVSSVLSLTA 434 (538)
Q Consensus 363 ~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~ 434 (538)
.|.+||..+.+.+. .+. +...+.+++|+ +++++++ ..+++|.+||..+++++..+... +.+.... .++|
T Consensus 303 ~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~~p 379 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FVHP 379 (543)
T ss_dssp EEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EEET
T ss_pred eEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cCCC
Confidence 99999998866544 443 56678899999 4456554 56899999999999998888742 2222222 2567
Q ss_pred C-CCEEEEEe-CCCcEEEEeC---------CcceeeeccccceEEEEE--eCCCEEEEEe-------CCCeEEEEecCCC
Q 009274 435 V-QHTLVVSH-ESGSIKVWRN---------DKFMKSMQTHKGSVFAVF--LEGKWLFTGG-------WDKTVSVQELAGD 494 (538)
Q Consensus 435 ~-~~~l~~~~-~dg~i~iwd~---------~~~~~~~~~h~~~v~~~~--~~~~~l~sgs-------~dg~v~iwd~~~~ 494 (538)
+ +..++++. .|++|.+||+ .+.++++..|.+.+..+. +++++|++++ .+++|.+||+.+.
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 6 66666665 5899999995 356788888887766665 4999999987 2779999999988
Q ss_pred eeEeeeecCC-----cccCCCceEEEEEeCCE-EEEE-----ECCCeEEEEEcCC
Q 009274 495 EFEEDVIPTG-----AIPCGSVITALLYWQGK-LFVG-----CADRTVKVYYYGK 538 (538)
Q Consensus 495 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-l~sg-----~~dg~v~vw~~~~ 538 (538)
+......... ......+....+.+++. ++++ +.|+.|.|||..+
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 7542221110 00122334444455665 4433 2479999999754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=186.70 Aligned_cols=262 Identities=11% Similarity=0.046 Sum_probs=187.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc--cCCCCCcceeeecccCC
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF--SFPLGHEPLKKWNEEKD 339 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~ 339 (538)
+..+++++.|++|.+||..+++.+.++..+.. +..++|+|++ +++++++.|++|++||+ .+.+. +.......
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~---~~~i~~g~- 222 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTK---VAEIKIGI- 222 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEE---EEEEECCS-
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcE---EEEEecCC-
Confidence 67788899999999999999999999984433 8999999955 46788888899999999 55432 22222211
Q ss_pred ceeeeEEEEee----cCCEEEEeeC-CCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe--CC-EEEEEec
Q 009274 340 WRYSGIHALTT----SGRYLYTGSG-DRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC--NG-VLYSGSR 400 (538)
Q Consensus 340 ~~~~~~~~~~~----~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~--~~-~l~s~s~ 400 (538)
....++++| +|+++++++. +++|.+||..+++++.++..+ ...+.++.++ ++ ++++...
T Consensus 223 --~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 223 --EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 123458899 9999988884 899999999999998887642 2368899998 23 7778888
Q ss_pred CCcEEEEECCCCceeE--EEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--cceeeecc----ccceEEEE-
Q 009274 401 DGTIRLWSLSDHSLLT--VLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND--KFMKSMQT----HKGSVFAV- 470 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~----h~~~v~~~- 470 (538)
++.|.+||+.+.+.+. .+.. ...... +.|+|+++++++++ .+++|.+||.. ++...+.. |.+....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~~--~~~~~~-~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~ 377 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIGA--APFLHD-GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 377 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEEC--CSSCCC-EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEE
T ss_pred CCeEEEEEecCCCcceeEEecc--CcCccC-ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccC
Confidence 9999999998876554 3332 222222 68999999877655 58999999954 45555553 65433333
Q ss_pred EeC-CCEEEEEe-CCCeEEEEecCC-------CeeEeeeecCCcccCCCceEEEEEeCCE-EEEEE-------CCCeEEE
Q 009274 471 FLE-GKWLFTGG-WDKTVSVQELAG-------DEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGC-------ADRTVKV 533 (538)
Q Consensus 471 ~~~-~~~l~sgs-~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~-------~dg~v~v 533 (538)
.++ +..++++. .|++|.+||+.+ .+........+ .......+.+++. |++++ .+++|.+
T Consensus 378 ~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 378 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred CCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC----CCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 455 66677775 589999999987 55554444321 2234444566765 55655 2789999
Q ss_pred EEcCC
Q 009274 534 YYYGK 538 (538)
Q Consensus 534 w~~~~ 538 (538)
||+.+
T Consensus 454 ~d~~~ 458 (543)
T 1nir_A 454 FDLKN 458 (543)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 99864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=179.77 Aligned_cols=267 Identities=10% Similarity=0.034 Sum_probs=182.5
Q ss_pred EEEEEEc---CCEEEEEe----CCC----cEEEEeC--CCCceE--EEEecCCcCeEEEEEecC--------------CC
Q 009274 255 VTGLAVG---GGFLFSSS----FDK----SIHVWSL--KDFSHV--HTFKGHDHKVMAVVYVDE--------------DQ 305 (538)
Q Consensus 255 V~~l~~~---~~~l~s~s----~dg----~i~iwd~--~~~~~~--~~~~~h~~~v~~l~~~~~--------------~~ 305 (538)
+...+|. .+++++|+ .|| +|++||+ .+++.+ ..+.+|...+..+++.+. +.
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 4444444 34566665 467 8999999 899887 558889888877776541 33
Q ss_pred CEEEEEcC--C---CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC---cEEEEECCCCceeEE
Q 009274 306 PLCISGDS--G---GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR---TIKAWSLLDGTLSCT 377 (538)
Q Consensus 306 ~~l~s~~~--d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~ 377 (538)
.+++++.. + +.|++||+... ....+ ..+.. .....+++|+|+.|++++.++ .|++||+.+++.. .
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l---~~~~~--~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGY-NQFVV---HRSPQ--PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSC-SCEEE---EEESS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred EEEEEEecCCCCccceEEEEcCCCC-CCEEE---eCCCC--cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-E
Confidence 34333332 2 79999999743 22222 22221 233468999999999999875 9999999998875 4
Q ss_pred ecCCCCCeEEEEEe--CCEEE-EEecCCc--EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeC-CC--cEE
Q 009274 378 MSGHKSAVSTLAVC--NGVLY-SGSRDGT--IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SG--SIK 449 (538)
Q Consensus 378 ~~~h~~~v~~l~~~--~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~ 449 (538)
+..|...+.+++|+ ++.|+ +++.|+. |++||+.+++. ..+..+ .... ..++|+|+|+.|++++. ++ .|+
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~-~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNN-TEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCE-EEEEECTTSSEEEEEECTTSSCEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcc-cceEECCCCCEEEEEECCCCCcEEE
Confidence 66788899999999 34566 6666655 99999998876 344433 2333 34799999999998886 45 577
Q ss_pred EEeCCc-ceeeeccccceEEEEEe--CCCEEEEEeCC---CeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-E
Q 009274 450 VWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWD---KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-L 522 (538)
Q Consensus 450 iwd~~~-~~~~~~~h~~~v~~~~~--~~~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 522 (538)
+||... ....+..|...+.++.| +|++|++++.+ ..|++||+.+++...... +.......+.+++. |
T Consensus 295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l 368 (415)
T 2hqs_A 295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS------TFLDETPSLAPNGTMV 368 (415)
T ss_dssp EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC------SSSCEEEEECTTSSEE
T ss_pred EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC------CCCcCCeEEcCCCCEE
Confidence 778543 34455566677777765 89999988864 589999999887643221 11233444555665 6
Q ss_pred EEEECCC---eEEEEEcC
Q 009274 523 FVGCADR---TVKVYYYG 537 (538)
Q Consensus 523 ~sg~~dg---~v~vw~~~ 537 (538)
++++.++ .|++|++.
T Consensus 369 ~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred EEEEcCCCccEEEEEECC
Confidence 6677666 79999864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-19 Score=171.47 Aligned_cols=262 Identities=11% Similarity=0.034 Sum_probs=186.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCc--CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCc
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH--KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (538)
+++++++.++.|++||+.+++.+..+..... .+..++|+|++..+++++..++.|.+||+.+++....+.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5789999999999999999999888874332 57899999988778888888999999999876543332221100000
Q ss_pred eeeeEEEEeecCCEEEEee------------CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEE
Q 009274 341 RYSGIHALTTSGRYLYTGS------------GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRL 406 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~i 406 (538)
......+++++++++++++ .++.|.+||+.+++.+..+.. ...+.+++|+ +++++++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 0122458899999888886 579999999999888877764 4567888998 4467766 689999
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC------------------------cEEEEeCCcc---eee
Q 009274 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG------------------------SIKVWRNDKF---MKS 459 (538)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------------------------~i~iwd~~~~---~~~ 459 (538)
||+.+++....+........ ..++|++..++..+.++ .|.+||.... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 99999988877765431111 26788888666554332 3678886542 122
Q ss_pred eccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEEEEEc
Q 009274 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKVYYY 536 (538)
Q Consensus 460 ~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~vw~~ 536 (538)
+..+...+.++.+ ++++++++ ++.|++||+.+++........ ..+....+.+++ .+++++.++.|++||+
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-----SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-----CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 3345555666665 88898888 799999999998766554432 123344455555 4778888999999997
Q ss_pred C
Q 009274 537 G 537 (538)
Q Consensus 537 ~ 537 (538)
.
T Consensus 309 ~ 309 (337)
T 1pby_B 309 E 309 (337)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-18 Score=164.27 Aligned_cols=270 Identities=10% Similarity=0.044 Sum_probs=192.8
Q ss_pred CcEEEEEEc--CCEEEEEeC-------CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 253 DCVTGLAVG--GGFLFSSSF-------DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+..++++ ++++++++. ++.|.+||..+++.+..+... ..+..++|+|+++.++++...++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 557789998 678877774 568999999999998888754 4478899999888788888889999999998
Q ss_pred CCCCCcceeeecccC----CceeeeEEEEeecCCEEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEE
Q 009274 324 FPLGHEPLKKWNEEK----DWRYSGIHALTTSGRYLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVL 395 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l 395 (538)
+++....+....... .........++++++++++++ .++.|.+||..+++.+..+..+...+.+++|+ ++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 765433332211110 000123468899999777766 47899999999999998887666678899998 5689
Q ss_pred EEEecCCcEEEEECCCCceeEEEecCCC--CceEEEEEEcCCCCEEEEEeC-CCcEEEEeCC--cceeeeccccceEEEE
Q 009274 396 YSGSRDGTIRLWSLSDHSLLTVLEEDSS--GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRND--KFMKSMQTHKGSVFAV 470 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~~~h~~~v~~~ 470 (538)
++++.++.|.+||+.+++....+..... ......++++|+++.+++++. ++.|.+||.. +....+......-..+
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 279 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLF 279 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEE
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEE
Confidence 9999999999999999998877765221 222334699999998777765 4999999964 3445554444333455
Q ss_pred EeCCCEEEEEe-CCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECC
Q 009274 471 FLEGKWLFTGG-WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCAD 528 (538)
Q Consensus 471 ~~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~d 528 (538)
++++++++.++ .++.|.+||..+++......... .+....+.+++. ++++..+
T Consensus 280 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 280 NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence 66888665555 68999999999988766544321 233334445665 5554443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-18 Score=165.36 Aligned_cols=270 Identities=12% Similarity=0.074 Sum_probs=179.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCce
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (538)
+..+++++.++.|++||..+++....+..+...+ .++|+|++..+++++..++.|.+||..++... ........ .
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~--~ 84 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--VVAIQEGQ--S 84 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--EEEEEECS--S
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--EEecccCC--C
Confidence 4557888899999999999999988888777777 99999987767777777999999999876541 12221111 1
Q ss_pred eeeEEEEeecCCEEEEeeCCC---cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEE-EEEecCCc-EEEEECCCCce
Q 009274 342 YSGIHALTTSGRYLYTGSGDR---TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVL-YSGSRDGT-IRLWSLSDHSL 414 (538)
Q Consensus 342 ~~~~~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~dg~-i~iwd~~~~~~ 414 (538)
.....++++++++++++..++ .|.+||+.+++.+..+..+ ....+++|+ ++++ +++..++. |.+|++.....
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~ 163 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV 163 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence 122258899999888666553 8999999999988887654 456899999 3344 45556688 99999986443
Q ss_pred eEEE--ecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--cc---eeeeccccceEEEEE--eCCCEEEEEe-CC
Q 009274 415 LTVL--EEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND--KF---MKSMQTHKGSVFAVF--LEGKWLFTGG-WD 483 (538)
Q Consensus 415 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~---~~~~~~h~~~v~~~~--~~~~~l~sgs-~d 483 (538)
+... .....+.....++++|+++++++++ .++.|++||.. +. +..+..+ ..+.++. ++|++++.++ .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 164 LFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp EEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSE
T ss_pred EeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCC
Confidence 3211 1001122234479999999665554 68999999954 34 4455443 3344444 4899776655 57
Q ss_pred CeEEEEecCCCeeEeee--ecC---CcccCCCceEEEEEeCCE-EEE-EECCCeEEEEEcCC
Q 009274 484 KTVSVQELAGDEFEEDV--IPT---GAIPCGSVITALLYWQGK-LFV-GCADRTVKVYYYGK 538 (538)
Q Consensus 484 g~v~iwd~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~-l~s-g~~dg~v~vw~~~~ 538 (538)
+.|.+||+.+++..... ... ...+........+.+++. |++ +..++.|.+|++.+
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 88999999988762221 111 000011111234455654 555 45567999999863
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=173.91 Aligned_cols=239 Identities=8% Similarity=-0.005 Sum_probs=171.7
Q ss_pred EeecCCCcEEEEEEc----------------CCEEEEEeCC------CcEEEEeCCCCceEEEEecCCcCeEEEEEecCC
Q 009274 247 DLQGHRDCVTGLAVG----------------GGFLFSSSFD------KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED 304 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~----------------~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 304 (538)
.+.+|...+..++++ +..++.++.+ +.|++||++. .....+..|...+.+++|+|++
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC
Confidence 466676666665554 5677777665 7999999974 5567788899999999999976
Q ss_pred CCEEEEEcCCC---cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEE-EeeCCCc--EEEEECCCCceeEEe
Q 009274 305 QPLCISGDSGG---GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRT--IKAWSLLDGTLSCTM 378 (538)
Q Consensus 305 ~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~ 378 (538)
. .+++++.++ .|++||+.+++.. ....+.. .....+|+|+|+.|+ +++.|+. |++||+.+++. ..+
T Consensus 191 ~-~la~~s~~~~~~~i~~~d~~tg~~~----~l~~~~~--~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l 262 (415)
T 2hqs_A 191 S-KLAYVTFESGRSALVIQTLANGAVR----QVASFPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV 262 (415)
T ss_dssp S-EEEEEECTTSSCEEEEEETTTCCEE----EEECCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC
T ss_pred C-EEEEEEecCCCcEEEEEECCCCcEE----EeecCCC--cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC
Confidence 5 556666664 9999999876432 1222211 233568999999777 6666654 99999988776 567
Q ss_pred cCCCCCeEEEEEe--CCEEEEEec-CC--cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC---CcEEE
Q 009274 379 SGHKSAVSTLAVC--NGVLYSGSR-DG--TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES---GSIKV 450 (538)
Q Consensus 379 ~~h~~~v~~l~~~--~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i 450 (538)
..|...+.+++|+ ++.|++++. ++ .|.+||+.+++.. .+..+ .. ....++|+|+|++|++++.+ ..|++
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~-~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~ 339 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWE-GS-QNQDADVSSDGKFMVMVSSNGGQQHIAK 339 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCS-SS-EEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecC-CC-cccCeEECCCCCEEEEEECcCCceEEEE
Confidence 7788899999999 447777775 44 6888899887643 33322 22 33347999999999988764 58999
Q ss_pred EeCCc-ceeeeccccceEEEEEe--CCCEEEEEeCCC---eEEEEecCCCeeEe
Q 009274 451 WRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWDK---TVSVQELAGDEFEE 498 (538)
Q Consensus 451 wd~~~-~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg---~v~iwd~~~~~~~~ 498 (538)
||... ....+..|. .+.+++| +|++|++++.++ .|++||+.+.....
T Consensus 340 ~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~ 392 (415)
T 2hqs_A 340 QDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 392 (415)
T ss_dssp EETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred EECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEE
Confidence 99653 334455554 6666666 899999988877 79999998766543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=161.06 Aligned_cols=264 Identities=13% Similarity=0.185 Sum_probs=165.8
Q ss_pred EEEEEeCCCcEEEEeCC-CC--ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC-CCcceeeecccCC
Q 009274 264 FLFSSSFDKSIHVWSLK-DF--SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL-GHEPLKKWNEEKD 339 (538)
Q Consensus 264 ~l~s~s~dg~i~iwd~~-~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~ 339 (538)
.+++++.|+.|++||++ ++ +.+..+ .|...+.+++|+|++..+++++..++.|.+|++.... ....+.......
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34455789999999995 33 233333 4777899999999766555555555999999997221 111222222111
Q ss_pred ceeeeEEEEeecCCEEEEeeC-CCcEEEEECC---CCceeEEecCCCCCeEEEEEe--CCEEEEEe-cCCcEEEEECCC-
Q 009274 340 WRYSGIHALTTSGRYLYTGSG-DRTIKAWSLL---DGTLSCTMSGHKSAVSTLAVC--NGVLYSGS-RDGTIRLWSLSD- 411 (538)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~~- 411 (538)
.....+++++++++++++. ++.|.+||+. +.+.+..+..+ ..+.+++|+ ++++++++ .++.|++||+.+
T Consensus 85 --~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 85 --SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp --CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred --CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 2235688999997766654 8899999994 34455555543 458899999 44777777 899999999987
Q ss_pred CceeE----EEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCc----c--eeeec----cc--cceEEEEEe--
Q 009274 412 HSLLT----VLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK----F--MKSMQ----TH--KGSVFAVFL-- 472 (538)
Q Consensus 412 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~----~--~~~~~----~h--~~~v~~~~~-- 472 (538)
++... ......... ...++++|+++++++++ .++.|.+||... . ...+. ++ ...+.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAG-PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp SCEEEEEEEEEECSTTCC-EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred CceeeecccccccCCCCC-cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 65432 223222223 33478999999776555 789999999642 1 12221 11 123445555
Q ss_pred CCCEEE-EEeCCCeEEEEecC--CCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEE-CCCeEEEEEc
Q 009274 473 EGKWLF-TGGWDKTVSVQELA--GDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGC-ADRTVKVYYY 536 (538)
Q Consensus 473 ~~~~l~-sgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~-~dg~v~vw~~ 536 (538)
++++|+ ++..++.|++||+. ++.......... ...+....+.+++. |++++ .++.|.+|++
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 788777 45578999999998 332222111111 11233344445554 66666 6899999965
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-17 Score=156.03 Aligned_cols=243 Identities=13% Similarity=0.147 Sum_probs=163.4
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCC-CcEEEEeCC--CCc--eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFD-KSIHVWSLK--DFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~d-g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
..|...+.+++|+ ++++++++.+ +.|++|+++ +++ .+..+..+. .+..++|+|++..+++++..++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3477788899998 8888888876 999999997 554 344555444 7899999998776767777799999999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee-CCCcEEEEECCC-CceeE----EecC-CCCCeEEEEEe--C
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLD-GTLSC----TMSG-HKSAVSTLAVC--N 392 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~-~~~~~----~~~~-h~~~v~~l~~~--~ 392 (538)
+..+.............. ....+++++++++++++ .++.|++||+.+ ++... .+.. ....+.+++|+ +
T Consensus 113 ~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDG---CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EETTEEEEEEEEECCCTT---BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred CCCCccccccccccCCCC---ceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 952222222222222111 22457899999888777 899999999987 65432 2222 34578899999 4
Q ss_pred CEEEEE-ecCCcEEEEECCC--Cce--eEEEecCCC----CceEEEEEEcCCCCEEEEEe-CCCcEEEEeCC----c--c
Q 009274 393 GVLYSG-SRDGTIRLWSLSD--HSL--LTVLEEDSS----GAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND----K--F 456 (538)
Q Consensus 393 ~~l~s~-s~dg~i~iwd~~~--~~~--~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~----~--~ 456 (538)
++++++ ..++.|.+||+.. ++. ......... ......++|+|++++++++. .++.|.+||.. + .
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 455544 4889999999954 433 222221111 11233479999998887554 78999999965 1 2
Q ss_pred eeeeccccceEEEEEe--CCCEEEEEe-CCCeEEEEec--CCCee
Q 009274 457 MKSMQTHKGSVFAVFL--EGKWLFTGG-WDKTVSVQEL--AGDEF 496 (538)
Q Consensus 457 ~~~~~~h~~~v~~~~~--~~~~l~sgs-~dg~v~iwd~--~~~~~ 496 (538)
+..+..+.. +.++++ ++++|++++ .++.|.+|++ .+++.
T Consensus 270 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 270 EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 233333333 555555 888888887 5899999954 45554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-18 Score=181.46 Aligned_cols=272 Identities=8% Similarity=0.026 Sum_probs=182.0
Q ss_pred CCcEEEEEEc--CCEEEEEeC-CC-----cEEEEeCCCCceEEEEecCCc------------------------CeEEEE
Q 009274 252 RDCVTGLAVG--GGFLFSSSF-DK-----SIHVWSLKDFSHVHTFKGHDH------------------------KVMAVV 299 (538)
Q Consensus 252 ~~~V~~l~~~--~~~l~s~s~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~l~ 299 (538)
...|.+++|+ |++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4568999999 899999998 88 899999999988777765433 378999
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCC--CCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE
Q 009274 300 YVDEDQPLCISGDSGGGIFVWSFSFPL--GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377 (538)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 377 (538)
|+|++..+ ++++. +.|++||+.++. ....+. .+. ......+++|||++|++++. +.|++||+.+++....
T Consensus 116 ~SpDg~~l-~~~~~-~~i~~~d~~~~~~~~~~~l~---~~~--~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 116 WSPDAQRL-LFPLG-GELYLYDLKQEGKAAVRQLT---HGE--GFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ECTTSSEE-EEEET-TEEEEEESSSCSTTSCCBCC---CSS--SCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred ECCCCCEE-EEEeC-CcEEEEECCCCCcceEEEcc---cCC--cccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 99977655 44444 999999998762 111221 111 12234689999999998875 6899999998877655
Q ss_pred ecCCCCC----------------eEEEEEe--CCEEEEEecCC---------------------------------cEEE
Q 009274 378 MSGHKSA----------------VSTLAVC--NGVLYSGSRDG---------------------------------TIRL 406 (538)
Q Consensus 378 ~~~h~~~----------------v~~l~~~--~~~l~s~s~dg---------------------------------~i~i 406 (538)
...+... +.+++|+ +++|++++.|+ .|.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 5444432 4779999 45788887765 7899
Q ss_pred EECCC-CceeEEEecCCCCceEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCc--ceeeeccccc----eEEEEE--e
Q 009274 407 WSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-----SGSIKVWRNDK--FMKSMQTHKG----SVFAVF--L 472 (538)
Q Consensus 407 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~--~~~~~~~h~~----~v~~~~--~ 472 (538)
||+.+ ++................++| |||+.|++++. +..|++||..+ ....+..+.. .+.++. +
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 99988 776544332112223344689 99999997764 56799999543 3444444432 223444 4
Q ss_pred CCCEEEEEeCCCeEEEEecC-CCeeEeeeecCCcccCCCceEEE-EEeCC-EEE-EEECCC--eEEEEEcC
Q 009274 473 EGKWLFTGGWDKTVSVQELA-GDEFEEDVIPTGAIPCGSVITAL-LYWQG-KLF-VGCADR--TVKVYYYG 537 (538)
Q Consensus 473 ~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~-sg~~dg--~v~vw~~~ 537 (538)
||+++++++.||.+++|.+. ++. ...+.. . ...+.... +.+++ .++ +++.++ .+++|++.
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTH-G---NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCC-S---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeee-c---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 89999999999988888765 222 222211 1 12233333 45566 454 455565 89999863
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-17 Score=173.41 Aligned_cols=275 Identities=10% Similarity=0.065 Sum_probs=182.9
Q ss_pred CcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC-----CC
Q 009274 253 DCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF-----PL 326 (538)
Q Consensus 253 ~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~ 326 (538)
..|.+++|+ ++.++.+ .|+.|++||+.+++... +..+...+.+++|+|++..+ +++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~l-a~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRV-AYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEE-EEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEE-EEE-ECCeEEEEecCcccccCCC
Confidence 469999999 6555555 46999999999886654 45577788999999977654 443 679999999987 44
Q ss_pred CCcceeeecccC---------CceeeeEEEEeecCCEEEEee---------------------------------CCCcE
Q 009274 327 GHEPLKKWNEEK---------DWRYSGIHALTTSGRYLYTGS---------------------------------GDRTI 364 (538)
Q Consensus 327 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~sg~---------------------------------~dg~i 364 (538)
............ ........+|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 322111111100 000023568999999999987 45789
Q ss_pred EEEECCCCceeEEec--CCCCCeEEEEEe--CCEEEEEecCC-----cEEEEECCCCceeEEEe-cCCCCce--EEEEEE
Q 009274 365 KAWSLLDGTLSCTMS--GHKSAVSTLAVC--NGVLYSGSRDG-----TIRLWSLSDHSLLTVLE-EDSSGAV--SSVLSL 432 (538)
Q Consensus 365 ~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~-~~~~~~~--~~~~~~ 432 (538)
++||+.+++...... .|...+.+++|+ ++.|++++.++ .|++||+.+++....+. ....... ...+.|
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999999887655442 467789999999 45788887776 89999999984443332 2222111 122589
Q ss_pred cC--CCCEEEEEeCCCcEEEEeC---CcceeeeccccceEEE-EEe--CCCEEEEEeC-CC----eEEEEecCCCeeEee
Q 009274 433 TA--VQHTLVVSHESGSIKVWRN---DKFMKSMQTHKGSVFA-VFL--EGKWLFTGGW-DK----TVSVQELAGDEFEED 499 (538)
Q Consensus 433 ~~--~~~~l~~~~~dg~i~iwd~---~~~~~~~~~h~~~v~~-~~~--~~~~l~sgs~-dg----~v~iwd~~~~~~~~~ 499 (538)
+| +|+++++++.|+.+++|+. .+....+..|...+.+ +.+ +++.|+.++. ++ .|+.||+.+++....
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence 99 9999999999999999863 3456677777776765 444 8887766554 44 677778777653222
Q ss_pred eecCCcccCCCceEEEEEeCCE-EEEE-ECC---CeEEEEEcC
Q 009274 500 VIPTGAIPCGSVITALLYWQGK-LFVG-CAD---RTVKVYYYG 537 (538)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~-l~sg-~~d---g~v~vw~~~ 537 (538)
.+ ...+....+++++. ++.+ +.+ +.|++|+..
T Consensus 398 -~~-----~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 398 -TP-----ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp -CC-----SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred -cC-----CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 11 12233344455665 5444 333 579999975
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-17 Score=175.99 Aligned_cols=306 Identities=8% Similarity=-0.032 Sum_probs=203.5
Q ss_pred ccceeeeeccCcceeEEeec-CC-----eEEEEEeec---------CC------------------------CcEEEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLS-KG-----NVKFKDLQG---------HR------------------------DCVTGLAV 260 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~-----~~~i~~l~~---------h~------------------------~~V~~l~~ 260 (538)
..+..+.++++++.++.... ++ .+.+|++.+ |. ..|.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34667788888888888776 66 677776432 21 23788999
Q ss_pred c--CCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecc
Q 009274 261 G--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE 336 (538)
Q Consensus 261 ~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 336 (538)
+ |++|++++. +.|++||+.+++ ....+..|...+.+++|+|++.. ++.++ ++.|++||+.++....... .
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~~---~ 190 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQLTA---D 190 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEECCC---C
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEecc---C
Confidence 9 889999886 899999999873 44556778889999999997664 45554 4699999998653221111 1
Q ss_pred cCCce--------------eeeEEEEeecCCEEEEeeCCC---------------------------------cEEEEEC
Q 009274 337 EKDWR--------------YSGIHALTTSGRYLYTGSGDR---------------------------------TIKAWSL 369 (538)
Q Consensus 337 ~~~~~--------------~~~~~~~~~~~~~l~sg~~dg---------------------------------~i~iwd~ 369 (538)
..... .....+|+|||++|++++.|+ .|++||+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 11000 013468999999999988765 8999999
Q ss_pred CC-CceeEEec--CCCCCeEEEEEe-CCEEEEEec-----CCcEEEEECCCCceeEEEecCCCCce--EEEEEEcCCCCE
Q 009274 370 LD-GTLSCTMS--GHKSAVSTLAVC-NGVLYSGSR-----DGTIRLWSLSDHSLLTVLEEDSSGAV--SSVLSLTAVQHT 438 (538)
Q Consensus 370 ~~-~~~~~~~~--~h~~~v~~l~~~-~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 438 (538)
.+ ++...... .|...+.+++|. ++.|++++. +..|++||+.+++....+..+....+ ...+.|+|||++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 88 87655443 477788899984 346776553 56799999999988776655432211 122689999999
Q ss_pred EEEEeCCCcEEEEeC--CcceeeeccccceEEEE---EeCCCEEEE-EeCCC--eEEEEecCC-CeeEeeeecCCcccCC
Q 009274 439 LVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAV---FLEGKWLFT-GGWDK--TVSVQELAG-DEFEEDVIPTGAIPCG 509 (538)
Q Consensus 439 l~~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~---~~~~~~l~s-gs~dg--~v~iwd~~~-~~~~~~~~~~~~~~~~ 509 (538)
+++++.||.+++|.. ......+..|...+.++ +++++.|+. ++.++ .+++|++.. +.....+.. ..
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-----~~ 425 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-----AP 425 (741)
T ss_dssp EEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-----SC
T ss_pred EEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-----CC
Confidence 999999998888752 22266777777777654 448887754 44455 899999864 322222221 11
Q ss_pred CceEEEEEeCCE-EEE-EECC---CeEEEEEc
Q 009274 510 SVITALLYWQGK-LFV-GCAD---RTVKVYYY 536 (538)
Q Consensus 510 ~~~~~~~~~~~~-l~s-g~~d---g~v~vw~~ 536 (538)
......+.+++. ++. .+.. +.+.+|+.
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 223334445665 443 3332 46777764
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-20 Score=175.16 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=79.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+||+ |||+..........+++.+|||.|||||++ ++ ...+.|+.+||||||||+||||+||+
T Consensus 168 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l------~~------~~~~~y~~ksDVwS~Gvvl~Elltg~~ 235 (307)
T 3omv_A 168 GLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVI------RM------QDNNPFSFQSDVYSYGIVLYELMTGEL 235 (307)
T ss_dssp TEEEEECCCSSCBC------------CCCCTTSCCHHHH------HC------CSSCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeeccCceecccCCcceeecccccCCCccCHHHh------hc------cCCCCCCcHHHhHhHHHHHHHHHHCCC
Confidence 4579999 888877654433345678999999999999 33 11346889999999999999999999
Q ss_pred ccchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.... .+...... . . ..+. +..........+.+++.+||+.+|.+||+..++.+.+..+
T Consensus 236 Pf~~~~~~~~~~~~~~~-~-----~-~~p~---------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l 298 (307)
T 3omv_A 236 PYSHINNRDQIIFMVGR-G-----Y-ASPD---------LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp TTTTCCCHHHHHHHHHT-T-----C-CCCC---------STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHhc-C-----C-CCCC---------cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 99874332 11100000 0 0 0000 0000111223478899999999999999999988876654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-17 Score=154.27 Aligned_cols=221 Identities=13% Similarity=0.136 Sum_probs=152.4
Q ss_pred EEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC-CCCCcceeeecccCCceeeeE
Q 009274 267 SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF-PLGHEPLKKWNEEKDWRYSGI 345 (538)
Q Consensus 267 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (538)
+++.|++|++||+.+++.. .+..|...|.+++|+|++. ++++++ ++.|++||+.+ +...... ..+. ......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~---~~~~-~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVD---TGFA-TICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECC---CTTC-CCBCSC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEec---cccc-cccccc
Confidence 3467899999999988766 4556889999999999766 555554 78999999987 5432221 1111 112234
Q ss_pred EEEeecCCEEEEeeC--CC--cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEE-EEecCCcEEEEECCC-CceeEE
Q 009274 346 HALTTSGRYLYTGSG--DR--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLY-SGSRDGTIRLWSLSD-HSLLTV 417 (538)
Q Consensus 346 ~~~~~~~~~l~sg~~--dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~-~~~~~~ 417 (538)
.+++|+++++++++. ++ .|..||..+++ ...+..+ ..+.+++|+ ++.++ +++.|+.+++|++.. ......
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 589999999999983 34 44455555554 3444433 348899999 44555 788999999998642 222333
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeC---CcceeeeccccceEEEEEe--CCCEEEEEeCC--------
Q 009274 418 LEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRN---DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWD-------- 483 (538)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~---~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~d-------- 483 (538)
+..+ ...+ ..+.|+|+++.++.++ .++.+++|+. ......+..|...+.++.| ++++|++++.+
T Consensus 168 ~~~~-~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTHG-EGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCCS-SSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred cccC-CCcc-ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 3332 2333 3479999999888766 5899999973 3456677778888887776 89999888876
Q ss_pred ---CeEEEEecCCCeeEe
Q 009274 484 ---KTVSVQELAGDEFEE 498 (538)
Q Consensus 484 ---g~v~iwd~~~~~~~~ 498 (538)
+.|++||+.+++...
T Consensus 246 ~~~~~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVET 263 (297)
T ss_dssp SEEEEEEEEETTSCSCEE
T ss_pred cCceEEEEEecCCCCcee
Confidence 569999998876543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-17 Score=169.33 Aligned_cols=259 Identities=13% Similarity=0.090 Sum_probs=174.8
Q ss_pred CCcEEEEEEc--CCEEEEEeC-CCcEEEEeCCCCceEEEEecCC-cCeEEEEEecCCCCEEEEEcC---CCcEEEEEccC
Q 009274 252 RDCVTGLAVG--GGFLFSSSF-DKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDS---GGGIFVWSFSF 324 (538)
Q Consensus 252 ~~~V~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~ 324 (538)
..+|.+++|+ |++|++++. ||+++||++++++.. .+..|. ..+.+++|+|+ .++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 4579999998 899999887 999999999666554 445555 68999999986 57777665 56677777654
Q ss_pred --CCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 009274 325 --PLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (538)
Q Consensus 325 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 399 (538)
...... ...... ..+.+++++++ .+++.+.++.+.+||+.+++.......+. .+++|+ ++++++++
T Consensus 98 ~~~g~~~~---l~~~~~---~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 98 SRPGEEQR---LEAVKP---MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp TSTTCCEE---CTTSCS---BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred cCCCcccc---ccCCCC---ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence 222221 111111 12558899987 33444444556699999887665554333 788888 66888887
Q ss_pred cC----CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC--cEEEEeCCc--ceeeeccccceEEE--
Q 009274 400 RD----GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG--SIKVWRNDK--FMKSMQTHKGSVFA-- 469 (538)
Q Consensus 400 ~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~--~~~~~~~h~~~v~~-- 469 (538)
.| +.|++||+.+++.. .+..+ .+.. ...+|+|||+.|+++..++ .|++||... .. .+..|...+..
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l~~~-~~~~-~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VFDSG-EGSF-SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EECCS-SCEE-EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred EcCCCCeEEEEEcCCCCCce-EeecC-CCcc-ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 77 78999999988765 44333 3333 4479999999999888888 899999543 33 55556544432
Q ss_pred --------EEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCC---eEEEEEc
Q 009274 470 --------VFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADR---TVKVYYY 536 (538)
Q Consensus 470 --------~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg---~v~vw~~ 536 (538)
+++||.++++++.|+.+++|++ ++... .. . ..+..+.+.++. +++++.+. .+.+|+.
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~-----~-~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--AP-----Q-GNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CC-----S-SEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cC-----C-CceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 4458899999999999999999 44332 11 1 234444444776 55566664 3555554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-16 Score=150.39 Aligned_cols=241 Identities=10% Similarity=0.036 Sum_probs=162.4
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeC-CCcEEEEeCCCCce-EEEEecCCcCeEEEEEecCCCCEEEEEcCC-C--cEE
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSF-DKSIHVWSLKDFSH-VHTFKGHDHKVMAVVYVDEDQPLCISGDSG-G--GIF 318 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g--~i~ 318 (538)
..+..+...+ +++|+ ++++++++. ++.|.+||+.+++. ...+..+..+..+++|+|++..++ ++..+ + .|.
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~ 111 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQ 111 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEE
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecCCCCcccEE
Confidence 3344556667 99998 776666655 89999999999988 777877777776699999766554 55544 3 899
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEE-EeeCCCc-EEEEECCCCcee----EEecCCCCCeEEEEEe-
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRT-IKAWSLLDGTLS----CTMSGHKSAVSTLAVC- 391 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~dg~-i~iwd~~~~~~~----~~~~~h~~~v~~l~~~- 391 (538)
+||+.+++....+ ..... ....+++|++++++ +...++. |.+|++.....+ ...........+++|+
T Consensus 112 v~d~~~~~~~~~~---~~~~~---~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp 185 (331)
T 3u4y_A 112 SYSFLKNKFISTI---PIPYD---AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP 185 (331)
T ss_dssp EEETTTTEEEEEE---ECCTT---EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred EEECCCCCeEEEE---ECCCC---ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence 9999865433222 22211 13568899998554 4456688 999998754332 1222344567899999
Q ss_pred -CCEE-EEEecCCcEEEEECCCCce---eEEEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCcc----eeeec
Q 009274 392 -NGVL-YSGSRDGTIRLWSLSDHSL---LTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF----MKSMQ 461 (538)
Q Consensus 392 -~~~l-~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~----~~~~~ 461 (538)
++++ +++..++.|.+||+.+++. +..+.... .. ..++++|+|+++++++ .++.|.+||..+. +..+.
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~-~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN--LP-GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS--CC-CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC--CC-ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 3445 4455689999999999988 66666432 22 2368999999777665 5788999996532 22221
Q ss_pred cc----cceE-----EEEEeCCCEEEEEeC-CCeEEEEecCCCeeE
Q 009274 462 TH----KGSV-----FAVFLEGKWLFTGGW-DKTVSVQELAGDEFE 497 (538)
Q Consensus 462 ~h----~~~v-----~~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~ 497 (538)
.+ .... .++++++++|++++. ++.|.+||+.+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 11 1111 355568988866555 579999999887643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-16 Score=151.05 Aligned_cols=256 Identities=13% Similarity=0.122 Sum_probs=166.3
Q ss_pred CeEEEEEeecCCCcEEEEEEc--CCEEEEEeC---CCcEEEEeCCCCc--eEEEEecCCcCeEEEEEecCCCCEEEEEcC
Q 009274 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSF---DKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDS 313 (538)
Q Consensus 241 ~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 313 (538)
+.........+...+..++|+ ++ +++++. ++.|++||+.+++ .+..+..+...+..++|+|++..++++...
T Consensus 28 g~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 28 KTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp TEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred CeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence 444443444556777889998 55 665554 6899999997765 444555577788999999977766666668
Q ss_pred CCcEEEEEccCCCCCcceeeecccC-------CceeeeEEEEeecCCEEEEeeCCCcEEEEECC-CCceeE--EecCC-C
Q 009274 314 GGGIFVWSFSFPLGHEPLKKWNEEK-------DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL-DGTLSC--TMSGH-K 382 (538)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~--~~~~h-~ 382 (538)
++.|.+|++........+....... ........+++|+++.+++...++.|++||+. +++... .+..+ .
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 186 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG 186 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC
Confidence 8999999996433322222221110 00112346889999966666678899999998 554332 22222 3
Q ss_pred CCeEEEEEe--CCEEEE-EecCCcEEEEECCC--Cce--eEEEecCCCC----ceEEEEEEcCCCCEEE-EEeCCCcEEE
Q 009274 383 SAVSTLAVC--NGVLYS-GSRDGTIRLWSLSD--HSL--LTVLEEDSSG----AVSSVLSLTAVQHTLV-VSHESGSIKV 450 (538)
Q Consensus 383 ~~v~~l~~~--~~~l~s-~s~dg~i~iwd~~~--~~~--~~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~dg~i~i 450 (538)
.....++|+ ++++++ +..++.+.+|++.. ++. +..+...... .....++++|+|++|+ +...++.|.+
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 367889999 444554 56788999999874 443 2223222111 2344479999999874 5566899999
Q ss_pred EeCC-----cceeeeccccceEEEEEe--CCCEEEEEeCC-CeEEEE--ecCCCeeE
Q 009274 451 WRND-----KFMKSMQTHKGSVFAVFL--EGKWLFTGGWD-KTVSVQ--ELAGDEFE 497 (538)
Q Consensus 451 wd~~-----~~~~~~~~h~~~v~~~~~--~~~~l~sgs~d-g~v~iw--d~~~~~~~ 497 (538)
|+.. +.+..+..+...+.++++ +|++|++++.+ +.|.+| |..++++.
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9965 233444444445556655 89988888765 899999 55556554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-16 Score=171.41 Aligned_cols=300 Identities=12% Similarity=0.071 Sum_probs=204.5
Q ss_pred cceeeeeccCcceeEEeecC----C--eEEEEE--------eecCCCcE-------EEEEEc--CCEEEEEeCC------
Q 009274 221 DIDQARAAGGVKDLVNGLSK----G--NVKFKD--------LQGHRDCV-------TGLAVG--GGFLFSSSFD------ 271 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~----~--~~~i~~--------l~~h~~~V-------~~l~~~--~~~l~s~s~d------ 271 (538)
.+....++++++.++..... + .+.+|+ +.+|...+ .+++|+ |+.+++++.+
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~ 133 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSM 133 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTC
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCccc
Confidence 45667777777777765432 3 344443 56788888 899998 7777777754
Q ss_pred CcEEEEeCCCCceE-------------------------------------------------EEEecCCcCeEEEEEec
Q 009274 272 KSIHVWSLKDFSHV-------------------------------------------------HTFKGHDHKVMAVVYVD 302 (538)
Q Consensus 272 g~i~iwd~~~~~~~-------------------------------------------------~~~~~h~~~v~~l~~~~ 302 (538)
..|.+||+.+++.. ..+.+|...+.++.|++
T Consensus 134 ~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~ 213 (1045)
T 1k32_A 134 TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG 213 (1045)
T ss_dssp CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET
T ss_pred ceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC
Confidence 35777776554321 23346777888899987
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC--
Q 009274 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG-- 380 (538)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-- 380 (538)
+ .++++++.|+.+.+|.+..... .......+.. ....+++|+|+.++++ .++.|++||+... .+..+.+
T Consensus 214 d--~l~~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~---~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~ 284 (1045)
T 1k32_A 214 H--RIYFITDIDGFGQIYSTDLDGK--DLRKHTSFTD---YYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGD 284 (1045)
T ss_dssp T--EEEEEECTTSSCEEEEEETTSC--SCEECCCCCS---SCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCC
T ss_pred C--EEEEEEeccCceEEEEEeCCCC--cceEecCCCC---cceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCc
Confidence 5 6777888899999998764221 1112222221 1245899999988887 4899999999544 3445554
Q ss_pred ---------CCCCeEEEEEe-CC--EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcE
Q 009274 381 ---------HKSAVSTLAVC-NG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSI 448 (538)
Q Consensus 381 ---------h~~~v~~l~~~-~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 448 (538)
|...+.+++|+ ++ .+++++ ++.+.+|++.+++... +..+ .......+.|+ +|+.++.++.++.+
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~-~~~~~~~~~~s-dg~~l~~~s~~~~l 360 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEP-LRIRYVRRGGD-TKVAFIHGTREGDF 360 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCC-SCEEEEEECSS-SEEEEEEEETTEEE
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCC-CcceEEeeeEc-CCCeEEEEECCCce
Confidence 33468999998 54 677766 8899999998876543 3332 33133346889 99999999988888
Q ss_pred E-EEeCCc-ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EE
Q 009274 449 K-VWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LF 523 (538)
Q Consensus 449 ~-iwd~~~-~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 523 (538)
. +||... ....+..|...+.++.| ||++|++++.++.|++||+.+++........ ...+....+++|+. |+
T Consensus 361 ~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~----~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 361 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR----EAMITDFTISDNSRFIA 436 (1045)
T ss_dssp EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS----SSCCCCEEECTTSCEEE
T ss_pred EEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC----CCCccceEECCCCCeEE
Confidence 8 888543 33445577777887776 9999999999999999999988765554221 12223444566776 66
Q ss_pred EEECC----------CeEEEEEcC
Q 009274 524 VGCAD----------RTVKVYYYG 537 (538)
Q Consensus 524 sg~~d----------g~v~vw~~~ 537 (538)
+++.+ +.|++||+.
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETT
T ss_pred EEecCccccccCCCCCeEEEEECC
Confidence 66554 499999975
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-15 Score=147.20 Aligned_cols=222 Identities=17% Similarity=0.169 Sum_probs=161.6
Q ss_pred CcEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEEecCCcC---------eEEEEEecCCCCEEEEE-cCCCcEEE
Q 009274 253 DCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHK---------VMAVVYVDEDQPLCISG-DSGGGIFV 319 (538)
Q Consensus 253 ~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~~l~s~-~~dg~i~v 319 (538)
..+.+++++ ++++ ++...++.|.+||..+++.+..+..+... +.+++|+|+++.+++++ +.++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 346678887 6644 55566899999999999998888765432 78999999877666666 46889999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC----CCCCeEEEEEe--CC
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG----HKSAVSTLAVC--NG 393 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~--~~ 393 (538)
||..+.+....+... .. .....+++++++++++++.++.|.+||..+++.+..+.. +...+.+++|+ ++
T Consensus 169 ~d~~~~~~~~~~~~~--~~---~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNT--GK---MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp EETTTTEEEEEECCC--CT---TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred EcCCCCceEEEecCC--CC---ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 999865433322211 11 112358899999999999999999999999998877754 55678889999 45
Q ss_pred EEEEEe-cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--cceeeeccccceEEE
Q 009274 394 VLYSGS-RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND--KFMKSMQTHKGSVFA 469 (538)
Q Consensus 394 ~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~h~~~v~~ 469 (538)
++++++ .++.|.+||+.+++.+..+..... . .+.++|+++++++++ .++.|.+||.. +.+..+... ....+
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 318 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES---L-AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNS 318 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSC---C-CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---c-eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCe
Confidence 566555 459999999999998888875432 2 268999999766655 68999999965 344444443 34566
Q ss_pred EEe--CCCEEEEEeCCC
Q 009274 470 VFL--EGKWLFTGGWDK 484 (538)
Q Consensus 470 ~~~--~~~~l~sgs~dg 484 (538)
+.+ +|++|+.+..++
T Consensus 319 ~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEECTTSCEEEEEEECC
T ss_pred EEEcCCCCEEEEEEccc
Confidence 665 888777766553
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-19 Score=169.10 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=79.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+||+ |||+.+...+.....+..+||+.|||||++ ++ ..++.++|||||||+||||+| |+
T Consensus 194 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~------~~---------~~~~~~sDvwS~Gvvl~Ellt~G~ 258 (329)
T 4aoj_A 194 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI------LY---------RKFTTESDVWSFGVVLWEIFTYGK 258 (329)
T ss_dssp TTEEEECCCC----------------CCCCGGGCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEcccccceeccCCCcceecCcccccccccChhhh------cC---------CCCCccccccchHHHHHHHHcCCC
Confidence 4579999 888887665544445678999999999999 44 678999999999999999999 89
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.+...+.. .+..-..... ......+.+++.+||+.+|.+||+..++.+.+..+
T Consensus 259 ~Pf~~~~~~~~~~---------------------~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l 317 (329)
T 4aoj_A 259 QPWYQLSNTEAID---------------------CITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQAL 317 (329)
T ss_dssp CTTCSSCHHHHHH---------------------HHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHH---------------------HHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 998754442110 0000000001 12233488899999999999999999999988887
Q ss_pred hcCC
Q 009274 166 IIKP 169 (538)
Q Consensus 166 ~~~~ 169 (538)
.+.|
T Consensus 318 ~~~p 321 (329)
T 4aoj_A 318 AQAP 321 (329)
T ss_dssp HHSC
T ss_pred hhCC
Confidence 7544
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-19 Score=168.72 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=80.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+.+.......++++|||.|||||++ +| ..|++++|||||||+||+|+||+
T Consensus 168 ~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl------~~---------~~y~~~~DiWSlGvilyeml~G~~ 232 (311)
T 4aw0_A 168 DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL------TE---------KSACKSSDLWALGCIIYQLVAGLP 232 (311)
T ss_dssp TSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHH------HH---------SCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHH------cC---------CCCCcHHHHHHHHHHHHHHHhCCC
Confidence 4567999 888888655443346679999999999999 33 45789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
||.+.+...+.....+ ..+.. ......++.+++.+||.++|.+||++.++.
T Consensus 233 PF~~~~~~~~~~~i~~---------~~~~~------------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 233 PFRAGNEGLIFAKIIK---------LEYDF------------PEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp SSCCSSHHHHHHHHHH---------TCCCC------------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCCCCHHHHHHHHHc---------CCCCC------------CcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 9988655532200000 00000 001122477899999999999999988754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=152.95 Aligned_cols=239 Identities=12% Similarity=0.107 Sum_probs=166.2
Q ss_pred EEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCC-cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeee
Q 009274 258 LAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334 (538)
Q Consensus 258 l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 334 (538)
++++ +.++++++.+++|++||+.+++.+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++....+...
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 3444 6788999999999999999999988887553 257889999988767778888999999999865433222211
Q ss_pred ccc-CCceeeeEEEEeecCCEEEEeeCC------------CcEEEEECCCCce---eEEecCCCCCeEEEEEe-CCEEEE
Q 009274 335 NEE-KDWRYSGIHALTTSGRYLYTGSGD------------RTIKAWSLLDGTL---SCTMSGHKSAVSTLAVC-NGVLYS 397 (538)
Q Consensus 335 ~~~-~~~~~~~~~~~~~~~~~l~sg~~d------------g~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~-~~~l~s 397 (538)
... .........+++|+++++++++.+ +.|.+||+.+++. +..+. +...+.+++|+ ++.+++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEE
Confidence 000 000112345899999999988865 8999999988543 33444 34468899998 333666
Q ss_pred EecCCcEEEEECCCCceeEEEecCCCC-----------------------------------------------------
Q 009274 398 GSRDGTIRLWSLSDHSLLTVLEEDSSG----------------------------------------------------- 424 (538)
Q Consensus 398 ~s~dg~i~iwd~~~~~~~~~~~~~~~~----------------------------------------------------- 424 (538)
++ +.|.+||+.+++....+......
T Consensus 164 ~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 54 34999999999877766533100
Q ss_pred -------------ceEEEEEEcC-CCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCeE
Q 009274 425 -------------AVSSVLSLTA-VQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTV 486 (538)
Q Consensus 425 -------------~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v 486 (538)
.....++++| ++++++++ ++.|.+||..+ ....+... ..+.++.+ ++++|++++.++.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v 318 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDL 318 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEE
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeE
Confidence 0112246679 99999888 88999999654 33444322 23345554 88888888889999
Q ss_pred EEEecCCCeeEeeeec
Q 009274 487 SVQELAGDEFEEDVIP 502 (538)
Q Consensus 487 ~iwd~~~~~~~~~~~~ 502 (538)
++||+.+.+.......
T Consensus 319 ~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 319 AVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEeccccceeeeeec
Confidence 9999999886655443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=158.92 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=140.3
Q ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCC----------ceEEE-----EecCCcCeEEEEEecCCCCEEE---EE
Q 009274 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----------SHVHT-----FKGHDHKVMAVVYVDEDQPLCI---SG 311 (538)
Q Consensus 252 ~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~----------~~~~~-----~~~h~~~v~~l~~~~~~~~~l~---s~ 311 (538)
...++.++++ +.++++++.|+ +++|+..+. ..+.. .-.+...|.+++|+|++..+++ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4457888888 88999999887 888874210 01111 1135678999999997664443 88
Q ss_pred cCCCcEEEEEccCC-----CCCcc---eeeecccCCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCceeEEecCCC
Q 009274 312 DSGGGIFVWSFSFP-----LGHEP---LKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK 382 (538)
Q Consensus 312 ~~dg~i~vwd~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 382 (538)
+.|+.|++||+.+. ..... +.....+. .....++|+|+ +++|++++.||+|++||++++..+....+|.
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG--GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG--GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCC--CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 99999999999764 11111 22222222 22334577887 7799999999999999999987777777899
Q ss_pred CCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCC-----CceEEEEEEcCCCCEEEEE-eCCCc------E
Q 009274 383 SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVS-HESGS------I 448 (538)
Q Consensus 383 ~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~-~~dg~------i 448 (538)
..|++++|+ +++|++|+.||+|++||++ ++....+..+.. ......+.|++++.++++. ..||. +
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 999999999 5699999999999999998 665555543321 1133446888887776543 34433 8
Q ss_pred EEEeCCc
Q 009274 449 KVWRNDK 455 (538)
Q Consensus 449 ~iwd~~~ 455 (538)
++|++.+
T Consensus 272 ~i~~l~~ 278 (434)
T 2oit_A 272 VMALLPK 278 (434)
T ss_dssp EEEECCC
T ss_pred EEEEecc
Confidence 8999653
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=172.31 Aligned_cols=121 Identities=14% Similarity=0.102 Sum_probs=81.0
Q ss_pred eeeec--cccccccccchhh---hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 13 VAKVG--CVGSRICDKEVGL---FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
.+|+. |+|+.+.+..... ....++|||.|||||++ +| ..|++++|||||||+|||||||+
T Consensus 189 ~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~------~~---------~~y~~~~DiwSlGvilyemltG~ 253 (336)
T 4g3f_A 189 RAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVV------MG---------KPCDAKVDIWSSCCMMLHMLNGC 253 (336)
T ss_dssp CEEECCCTTCEEC------------CCCCCCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSS
T ss_pred EEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHH------CC---------CCCCcHHHHHHHHHHHHHHHHCc
Confidence 37999 8888876543211 12347899999999999 55 56889999999999999999999
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.+...+... +........ ...+.....+.+++.+||+++|.+||++.++.+.+...+
T Consensus 254 ~Pf~~~~~~~~~~~----------i~~~~~~~~--------~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 254 HPWTQYFRGPLCLK----------IASEPPPIR--------EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp CSSTTTCCSCCHHH----------HHHSCCGGG--------GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH----------HHcCCCCch--------hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 9987654422200 000000000 001112234788999999999999999999888776654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-16 Score=175.20 Aligned_cols=274 Identities=10% Similarity=0.059 Sum_probs=193.4
Q ss_pred EEeecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCC-CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 246 KDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+.+|...+.++.|+ +.++++++.|++++||.+.. +.....+..|. .+...+|+|++..+++ + .++.|++||+.
T Consensus 197 ~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~-~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILF-S-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEE-E-ETTEEEEECTT
T ss_pred EECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEE-E-eCCEEEEecCC
Confidence 4458999999999999 54556777889999998753 44555666565 4667799998776644 4 48999999983
Q ss_pred CCCCCcceeeecccC---------CceeeeEEEEe-ecCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-CeEEEEEe-
Q 009274 324 FPLGHEPLKKWNEEK---------DWRYSGIHALT-TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-AVSTLAVC- 391 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~- 391 (538)
.. .+....... ........+++ |+|+.+++++ ++.|++|++.+++.. .+..|.. .+.+++|+
T Consensus 274 ~~----~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~sd 347 (1045)
T 1k32_A 274 TE----KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGDT 347 (1045)
T ss_dssp TC----CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSSS
T ss_pred ce----EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEcC
Confidence 22 121211110 00112356899 9999888887 789999999877654 4566777 89999998
Q ss_pred CCEEEEEecCCcEE-EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEE
Q 009274 392 NGVLYSGSRDGTIR-LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVF 468 (538)
Q Consensus 392 ~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~ 468 (538)
++.+++++.++.+. +||+.+++... +. .+...+ ..++|+|||++|++++.++.|++||.. +.......|...+.
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~-l~-~~~~~~-~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEK-FE-ENLGNV-FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE-CC-CCCCSE-EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred CCeEEEEECCCceEEEEECCCCCceE-ec-CCccce-eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 33788888888888 99998776543 33 333333 347999999999999999999999964 34445557888877
Q ss_pred EEEe--CCCEEEEEeCCC----------eEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEE
Q 009274 469 AVFL--EGKWLFTGGWDK----------TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYY 535 (538)
Q Consensus 469 ~~~~--~~~~l~sgs~dg----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~ 535 (538)
+++| ||++|++++.++ .|++||+.+++......+ ........+.+++. |++++.++...+|+
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~-----~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE-----NSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS-----SSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC-----CcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 7765 999999887754 899999998874332221 11223344556665 77788888777776
Q ss_pred c
Q 009274 536 Y 536 (538)
Q Consensus 536 ~ 536 (538)
.
T Consensus 500 ~ 500 (1045)
T 1k32_A 500 R 500 (1045)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-16 Score=148.84 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=161.0
Q ss_pred EeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC-CceEEEEecC-CcCeEEEEEecCCCCEEEEEc--CCCcEEEE
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD-FSHVHTFKGH-DHKVMAVVYVDEDQPLCISGD--SGGGIFVW 320 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~--~dg~i~vw 320 (538)
.+..|...|.+++|+ +++|++++ ++.|++||+.+ ++.......| ...+.+++|+|++. ++++++ .++...+|
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC-EEEEEEeCCCCcceEE
Confidence 456688999999999 88888887 88999999999 8877766666 37789999999765 555555 44566777
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEE-EeeCCCcEEEEECCC-CceeEEecCCCCCeEEEEEe--CCEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC--NGVLY 396 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~ 396 (538)
.++..... ......... ....+++|+++.++ +++.|+.+++|+++. +.....+..|...+.+++|+ ++.++
T Consensus 114 ~~~~~~~~--~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 114 LLPSTGGT--PRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEETTCCC--CEECCSSSS---EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred EEECCCCc--eEEeecCCC---ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence 66432211 122222211 23458899999776 788899999998632 33445666788899999999 44666
Q ss_pred EEe-cCCcEEEEECC-CCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC-----------CcEEEEeCCc--c--eee
Q 009274 397 SGS-RDGTIRLWSLS-DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-----------GSIKVWRNDK--F--MKS 459 (538)
Q Consensus 397 s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~--~--~~~ 459 (538)
.++ .++.+++|++. .+.....+..+. .....+.|+|++++|++++.+ +.|++||... . +..
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 555 59999999986 455555554432 233447899999999988766 5699999643 2 333
Q ss_pred eccccceEEEEEe--CCCEEEEEeCCC
Q 009274 460 MQTHKGSVFAVFL--EGKWLFTGGWDK 484 (538)
Q Consensus 460 ~~~h~~~v~~~~~--~~~~l~sgs~dg 484 (538)
+..|...+.++.| ++++|++++.|.
T Consensus 267 ~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCcccccceECCCCCEEEEEEecc
Confidence 4467777776665 889888887654
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-19 Score=170.67 Aligned_cols=113 Identities=16% Similarity=0.275 Sum_probs=81.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+.+... ..++++|||.|||||++ +| ..|+.++|||||||+||||+||+
T Consensus 161 ~g~vKl~DFGla~~~~~~~~--~~~~~~GT~~YmAPE~l------~~---------~~y~~~~DiwSlGvilyemltG~~ 223 (350)
T 4b9d_A 161 DGTVQLGDFGIARVLNSTVE--LARACIGTPYYLSPEIC------EN---------KPYNNKSDIWALGCVLYELCTLKH 223 (350)
T ss_dssp TCCEEECSTTEESCCCHHHH--HHHHHHSCCTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEcccccceeecCCcc--cccccCCCccccCHHHH------CC---------CCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3568999 88888875432 25679999999999999 55 56889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+.... ....++ ........++.+++.+||+++|.+||++.++.+
T Consensus 224 PF~~~~~~~~~~~i---------~~~~~~-----------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 224 AFEAGSMKNLVLKI---------ISGSFP-----------PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp SCCCSSHHHHHHHH---------HHTCCC-----------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCcCHHHHHHHH---------HcCCCC-----------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 99987555222000 000000 000111234788999999999999999888765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=156.96 Aligned_cols=185 Identities=12% Similarity=0.060 Sum_probs=135.1
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEe------------------------ecCCCcEEEEEEc--CCEEE----EEeC
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL------------------------QGHRDCVTGLAVG--GGFLF----SSSF 270 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l------------------------~~h~~~V~~l~~~--~~~l~----s~s~ 270 (538)
..+...+++....++.+..++ +.++.. ..|...|++++|+ +++|+ +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 355666777777777777665 555431 1245679999999 88998 8899
Q ss_pred CCcEEEEeCCCC--------ce---EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCC
Q 009274 271 DKSIHVWSLKDF--------SH---VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD 339 (538)
Q Consensus 271 dg~i~iwd~~~~--------~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 339 (538)
|++|++||+.++ +. +..+.+|...|.+++|+|+++.++++++.||+|++||++++.. ......+.
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~---~~~~~~~~- 192 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK---VCATLPST- 192 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE---EEEEECGG-
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc---eeeccCCC-
Confidence 999999998654 22 4556679999999999998788999999999999999987522 11111111
Q ss_pred ceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCC-------CCeEEEEEe-CCEEE--EEecCC------c
Q 009274 340 WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-------SAVSTLAVC-NGVLY--SGSRDG------T 403 (538)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~-~~~l~--s~s~dg------~ 403 (538)
......+|+++|++|++|+.||.|++||++ ++....+..|. ..|.+++|+ +..++ .++.|| .
T Consensus 193 -~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 193 -VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp -GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred -CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 223456889999999999999999999998 66666554432 378999999 44333 233443 3
Q ss_pred EEEEECCCC
Q 009274 404 IRLWSLSDH 412 (538)
Q Consensus 404 i~iwd~~~~ 412 (538)
+++||++..
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 899999865
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=168.07 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=162.2
Q ss_pred eecCCC---cEEEEEEc--CCEEEEEeCC---------CcEEEEeCCCCceEEEEe---cCCcCeEEEEEecCCCCEEEE
Q 009274 248 LQGHRD---CVTGLAVG--GGFLFSSSFD---------KSIHVWSLKDFSHVHTFK---GHDHKVMAVVYVDEDQPLCIS 310 (538)
Q Consensus 248 l~~h~~---~V~~l~~~--~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s 310 (538)
+.+|.. .|.+++|+ |++|++++.+ +.+.+||+.+++. ..+. .|...+..++|+|++..+++
T Consensus 53 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~- 130 (723)
T 1xfd_A 53 IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF- 130 (723)
T ss_dssp ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE-
T ss_pred eccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE-
Confidence 445554 49999999 8999999875 7788999998876 3343 34445889999998776644
Q ss_pred EcCCCcEEEEEccCCCCCcceeeecccC------C-------ceeeeEEEEeecCCEEEEeeCCC---------------
Q 009274 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEK------D-------WRYSGIHALTTSGRYLYTGSGDR--------------- 362 (538)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~l~sg~~dg--------------- 362 (538)
++. +.|++||+.++............. . .......+|+|||+.|++++.|+
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 443 799999998754322211100000 0 00113468999999999887653
Q ss_pred -------------------cEEEEECCCCceeEEecCC------CCCeEEEEEe-CC-EEEEEec----CCcEEEEECCC
Q 009274 363 -------------------TIKAWSLLDGTLSCTMSGH------KSAVSTLAVC-NG-VLYSGSR----DGTIRLWSLSD 411 (538)
Q Consensus 363 -------------------~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~-~~-~l~s~s~----dg~i~iwd~~~ 411 (538)
.|++||+.+++....+..+ ...+.+++|+ ++ ++++.+. +..|++||+.+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 7999999988866666554 5678999999 44 5555543 35799999999
Q ss_pred CceeEEEecCCCCceE---EEEEEcCCCCEEEE--EeCCC------cEEEEe-CC-cc---eeeeccccceEE---EEEe
Q 009274 412 HSLLTVLEEDSSGAVS---SVLSLTAVQHTLVV--SHESG------SIKVWR-ND-KF---MKSMQTHKGSVF---AVFL 472 (538)
Q Consensus 412 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~--~~~dg------~i~iwd-~~-~~---~~~~~~h~~~v~---~~~~ 472 (538)
++....+..++.+.+. ....|+|||+.|+. +..++ .|.+|| .. .. ...+..+...+. ++++
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence 9877665543333221 13589999997765 45666 577777 22 23 445543333333 4455
Q ss_pred CCCEEEEEeCC---CeEEEEecCC
Q 009274 473 EGKWLFTGGWD---KTVSVQELAG 493 (538)
Q Consensus 473 ~~~~l~sgs~d---g~v~iwd~~~ 493 (538)
+|+.|+..+.+ +.+++|++..
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCCEEEEEEcCCCCcceEEEEEeC
Confidence 99998776655 7899999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-14 Score=140.84 Aligned_cols=244 Identities=16% Similarity=0.154 Sum_probs=156.5
Q ss_pred CCCcEEEEEEc--CCEEEEEeCC----CcEEEEeCCC--Cce--EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFD----KSIHVWSLKD--FSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~d----g~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
|...+..++|+ +++|++++.+ +.|.+|+++. ++. +.....+......+++ ++..++++...++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56667778998 8889999886 7999998865 433 3444445666777777 455565666678999999
Q ss_pred EccCCCCCcceeeecccCC---------ceeeeEEEEeecCCEEEEee-CCCcEEEEECCCCc-------ee------EE
Q 009274 321 SFSFPLGHEPLKKWNEEKD---------WRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGT-------LS------CT 377 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~-------~~------~~ 377 (538)
++................. .......+++|+++++++++ .++.|++|++.... .. ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975443322221111000 01113468999999665554 58899999887543 11 11
Q ss_pred ecCCCCCeEEEEEe--CCEEEEEe-cCCcEEEEECCCCce--eEEEecCCC-CceEEEEEEcCCCCEEEEEeCC--CcEE
Q 009274 378 MSGHKSAVSTLAVC--NGVLYSGS-RDGTIRLWSLSDHSL--LTVLEEDSS-GAVSSVLSLTAVQHTLVVSHES--GSIK 449 (538)
Q Consensus 378 ~~~h~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d--g~i~ 449 (538)
...+......++|+ ++++++++ .++.|.+||+.+++. +..+..... ......++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 22345567899999 44676666 689999999987754 222322111 1122347999999998777654 8999
Q ss_pred EEeCC----c--ceeeeccccceEEEEE--eCCCEEEEEe-CCCeEEEEec--CCCeeE
Q 009274 450 VWRND----K--FMKSMQTHKGSVFAVF--LEGKWLFTGG-WDKTVSVQEL--AGDEFE 497 (538)
Q Consensus 450 iwd~~----~--~~~~~~~h~~~v~~~~--~~~~~l~sgs-~dg~v~iwd~--~~~~~~ 497 (538)
+|+.. + .+..+.. ...+.+++ ++|++|++++ .++.|.+|++ .++++.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 99864 2 2222222 23344555 4899888888 5789999654 466543
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-19 Score=165.88 Aligned_cols=120 Identities=13% Similarity=0.256 Sum_probs=86.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|++ |+|+.....+........+||+.|||||++ .+ ..++.++|||||||+||||+| |+
T Consensus 164 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~------~~---------~~~~~k~DVwS~Gvvl~Ellt~G~ 228 (299)
T 4asz_A 164 NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI------MY---------RKFTTESDVWSLGVVLWEIFTYGK 228 (299)
T ss_dssp GGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcEEECCcccceecCCCCceeecCceecChhhcCHHHH------cC---------CCCCchhhHHHHHHHHHHHHcCCC
Confidence 4579999 888877665544334567899999999999 33 568899999999999999999 89
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.+...+. .+. + +..+ ........++.+++.+||+.+|.+||+..++...+.++
T Consensus 229 ~Pf~~~~~~~~~~~i~-~----------------~~~~----~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 229 QPWYQLSNNEVIECIT-Q----------------GRVL----QRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp CTTTTSCHHHHHHHHH-H----------------TCCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH-c----------------CCCC----CCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 99886544222 000 0 0000 00011223488899999999999999999998887776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 288 ~ 288 (299)
T 4asz_A 288 A 288 (299)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-16 Score=168.63 Aligned_cols=266 Identities=9% Similarity=0.047 Sum_probs=166.9
Q ss_pred EEEEEEcCCEEEEEeCCCcEEEEeCCCCceE-EEEecCC-----------------cCeEEEEEecCCCCEEEEEcCCCc
Q 009274 255 VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHV-HTFKGHD-----------------HKVMAVVYVDEDQPLCISGDSGGG 316 (538)
Q Consensus 255 V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~l~~~~~~~~~l~s~~~dg~ 316 (538)
+..+.|.++.+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|+ +.++++ .++.
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~--~~~~ 102 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF--TQGG 102 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE--ETTE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE--ECCE
Confidence 344556678888888888 8 9999999873 4443332 46999999997 655555 3599
Q ss_pred EEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC-----CceeEEecCCCCC-------
Q 009274 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-----GTLSCTMSGHKSA------- 384 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~h~~~------- 384 (538)
|++||+.++.... ...... .....+++|||+.|+++ .|+.|++||+.+ ++.......+...
T Consensus 103 i~~~d~~~~~~~~----l~~~~~--~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 103 LVGFDMLARKVTY----LFDTNE--ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEEETTTTEEEE----EECCTT--CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred EEEEECCCCceEE----ccCCcc--cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 9999997653211 111111 11234899999999885 679999999998 7766554444433
Q ss_pred -------eEEEEEe--CCEEEEEe---------------------------------cCCcEEEEECCCCceeEEEecCC
Q 009274 385 -------VSTLAVC--NGVLYSGS---------------------------------RDGTIRLWSLSDHSLLTVLEEDS 422 (538)
Q Consensus 385 -------v~~l~~~--~~~l~s~s---------------------------------~dg~i~iwd~~~~~~~~~~~~~~ 422 (538)
+.+++|+ +++|++++ .+..|++||+.+++.........
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 4789999 45888887 44679999999887654433221
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCcc--eeeec--cccce---E--EEEEe--CCCEEEEEeCCCeE
Q 009274 423 SGAVSSVLSLTAVQHTLVVSHESG-----SIKVWRNDKF--MKSMQ--THKGS---V--FAVFL--EGKWLFTGGWDKTV 486 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~--~h~~~---v--~~~~~--~~~~l~sgs~dg~v 486 (538)
.......+.|+|||+.|++++.++ .|++||..+. ...+. .+... + ..+++ +|+++++++.||.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 223344479999999999988775 8999996542 33332 12221 1 24566 88999999999999
Q ss_pred EEEecC-CCeeEeeeecCCcccCCCceEEE-EEeCC-EEEE-EECCC----eEEEEEc
Q 009274 487 SVQELA-GDEFEEDVIPTGAIPCGSVITAL-LYWQG-KLFV-GCADR----TVKVYYY 536 (538)
Q Consensus 487 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~s-g~~dg----~v~vw~~ 536 (538)
++|++. ++........ + ...+...+ +.+++ .|+. ++.++ .|..|++
T Consensus 336 ~l~~~~~~~~~~~~l~~-~---~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTK-G---EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp EEEEEETTSCEEEECCC-S---SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred EEEEEECCCCEEEecCC-C---CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 999875 3333222221 1 11222323 44455 4554 44554 5666664
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-19 Score=166.49 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=75.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|++ |+|+..... ..++++|||.|||||++ . ++|++++|||||||+||||+||+ |
T Consensus 169 g~vKl~DFGla~~~~~~----~~~~~~GTp~YmAPE~~------~----------~~y~~~~DiwSlGvilyelltg~~P 228 (290)
T 3fpq_A 169 GSVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMY------E----------EKYDESVDVYAFGMCMLEMATSEYP 228 (290)
T ss_dssp SCEEECCTTGGGGCCTT----SBEESCSSCCCCCGGGG------G----------TCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEEeCcCCEeCCCC----ccCCcccCccccCHHHc------C----------CCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 568999 888754432 25579999999999988 2 35889999999999999999999 9
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.... .+.... . ....+. .......+.+.+++.+||.++|.+||++.++.+
T Consensus 229 f~~~~~~~~~~~~i-~-------~~~~~~-----------~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 229 YSECQNAAQIYRRV-T-------SGVKPA-----------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp TTTCSSHHHHHHHH-T-------TTCCCG-----------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCcHHHHHHHH-H-------cCCCCC-----------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9764222 111000 0 000000 001112234788999999999999999877654
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-19 Score=165.63 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=86.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+||+ ||||.+...+.....++.+||+.|||||++ .+ +.++.+||||||||+||||+| |+
T Consensus 181 ~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l------~~---------~~~s~ksDVwSfGvvl~El~t~g~ 245 (308)
T 4gt4_A 181 KLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI------MY---------GKFSIDSDIWSYGVVLWEVFSYGL 245 (308)
T ss_dssp GGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEECCcccceeccCCCceeEecccccCCcccCHHHH------hC---------CCCCccchhhhHHHHHHHHHhCCC
Confidence 4579999 888888766554446678999999999999 33 678899999999999999999 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.+.+...+. .+. .. ..++ ........+.+++.+|++.+|.+||+..++.+.|+.
T Consensus 246 ~Pf~~~~~~~~~~~i~--~~-------~~~~------------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 246 QPYCGYSNQDVVEMIR--NR-------QVLP------------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp CTTTTCCHHHHHHHHH--TT-------CCCC------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHH--cC-------CCCC------------CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 99886544222 000 00 0000 001122347889999999999999999999887764
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=161.69 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=68.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+...+... .++.+|||.|||||++ .| ...+++++|||||||+||+|+||+
T Consensus 148 ~~~vkl~DFGla~~~~~~~~---~~~~~GT~~Y~APE~~------~~--------~~y~~~~~DiwSlGvily~lltg~~ 210 (275)
T 3hyh_A 148 HLNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVI------SG--------KLYAGPEVDVWSCGVILYVMLCRRL 210 (275)
T ss_dssp TCCEEECCSSCC------------------CTTSCHHHH------SS--------SSCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeecCCCeecCCCCc---cCCeeECcccCChhhh------cC--------CCCCCChhhhHHHHHHHHHHHHCCC
Confidence 3568998 78887765542 5679999999999999 44 123468999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+. .+. ...+. . .......+.+++.+||+.+|.+||++.++.+
T Consensus 211 PF~~~~~~~~~~~i~----------~~~~~--------~----p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 211 PFDDESIPVLFKNIS----------NGVYT--------L----PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp SSCCSSHHHHHHHHH----------HTCCC--------C----CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCCCHHHHHHHHH----------cCCCC--------C----CCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 99876554222 000 00000 0 0011224788999999999999999888765
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-18 Score=166.95 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=87.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+||+ |+||.+.........++.+||+.|||||++ .+ ..++.+||||||||+||||+| |+
T Consensus 221 ~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l------~~---------~~y~~ksDVwS~Gv~l~El~t~G~ 285 (353)
T 4ase_A 221 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI------FD---------RVYTIQSDVWSFGVLLWEIFSLGA 285 (353)
T ss_dssp GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCEEECcchhhhhcccCCCceeeccccccccccCHHHH------hc---------CCCCCcccEeehHHHHHHHHhCCC
Confidence 4689999 889887655443335578999999999999 33 568899999999999999998 89
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+....... . ..+..-..... ....+++.+++.+||+.+|.+||+..++.+.+..+
T Consensus 286 ~Pf~~~~~~~~~-------------~-------~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 286 SPYPGVKIDEEF-------------C-------RRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp CSSTTCCCSHHH-------------H-------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH-------------H-------HHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 99875332100 0 00000000001 12233578899999999999999999999988887
Q ss_pred hc
Q 009274 166 II 167 (538)
Q Consensus 166 ~~ 167 (538)
++
T Consensus 346 lq 347 (353)
T 4ase_A 346 LQ 347 (353)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=169.31 Aligned_cols=272 Identities=9% Similarity=0.052 Sum_probs=176.2
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCc---CeEEEEEecCCCCEEEEEcC---------CCcEEEE
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH---KVMAVVYVDEDQPLCISGDS---------GGGIFVW 320 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~---------dg~i~vw 320 (538)
+.+++|+ |+++++ +.||+|++||+.+++....+..|.. .|.+++|+|++. .+++++. ++.+++|
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEE
Confidence 5667888 666655 7899999999999998888887765 499999999766 4555554 3788999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe---------------
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV--------------- 385 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v--------------- 385 (538)
|+.++.. ..+.....+. ......+++|||+.|+.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~--~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSN--AKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCCC-EECCCTTCCS--CCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCce-EeccCCcccc--ccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 9987654 1122111111 11223579999999999886 799999999988776665544433
Q ss_pred ---EEEEEe--CCEEEEEecCC----------------------------------cEEEEECCCCceeEEEecCC----
Q 009274 386 ---STLAVC--NGVLYSGSRDG----------------------------------TIRLWSLSDHSLLTVLEEDS---- 422 (538)
Q Consensus 386 ---~~l~~~--~~~l~s~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~~---- 422 (538)
.+++|+ ++.|++++.|+ .|++||+.+++....+..+.
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 789999 45788877553 79999999888655555331
Q ss_pred CCceEEEEEEcCCCCEEEEEeC----CCcEEEEeCCc--ceeeecc-ccceE------EEEEeCCCEEEE--EeCCC---
Q 009274 423 SGAVSSVLSLTAVQHTLVVSHE----SGSIKVWRNDK--FMKSMQT-HKGSV------FAVFLEGKWLFT--GGWDK--- 484 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~--~~~~~~~-h~~~v------~~~~~~~~~l~s--gs~dg--- 484 (538)
.......+.|+|||+++++... +..|++||... ....+.. +...+ ..+++||+.|+. +..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 1223344799999998877653 35799999543 3333333 23332 234458886664 45677
Q ss_pred ---eEEEEe-cCCCe---eEeeeecCCcccCCCceEE-EEEeCCE-EEEEEC-C--CeEEEEEcC
Q 009274 485 ---TVSVQE-LAGDE---FEEDVIPTGAIPCGSVITA-LLYWQGK-LFVGCA-D--RTVKVYYYG 537 (538)
Q Consensus 485 ---~v~iwd-~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~sg~~-d--g~v~vw~~~ 537 (538)
.|++|| ..++. .. .... + ....... .+.+++. |+..+. + +.+++|+++
T Consensus 333 ~~~~l~~~d~~~~~~~~~~~-~l~~-~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSNDNIQ-SITS-G---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp CEEEEEEECSSCCSSSCCCC-BSCC-S---SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred ceeEEEEEeccCCCCcccee-Eeec-C---CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 577777 34443 21 1111 1 1223333 3455654 555444 4 889999874
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-15 Score=146.09 Aligned_cols=232 Identities=11% Similarity=0.066 Sum_probs=157.9
Q ss_pred cEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEEecC-----CcCeEEEEEecCCCCEEEEEc------------C
Q 009274 254 CVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGH-----DHKVMAVVYVDEDQPLCISGD------------S 313 (538)
Q Consensus 254 ~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~------------~ 313 (538)
.+.+++|+ ++++ ++++.++.|.+||+.+++.+..+... ...+.+++|+|++..+ ++++ .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTL-AIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEE-EEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEE-EEEeccccccccccccc
Confidence 47889998 6555 55666889999999999988877632 1256789999976655 4443 5
Q ss_pred CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCC--CCeEEEEEe
Q 009274 314 GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK--SAVSTLAVC 391 (538)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~ 391 (538)
++.|.+||+.+++....+.. .. . ....++++++++++++ ++.|++||+.+++.+..+..+. .++ .|+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~---~~--~-~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s 182 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA---PR--Q-ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQ 182 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC---CS--S-CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCC
T ss_pred CceEEEEECCCCcEEEEEeC---CC--C-cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc---eeC
Confidence 79999999976543322221 11 1 1234789999988877 6899999999998887775443 222 444
Q ss_pred --CCEEEEEe-cCC-----------------------cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC
Q 009274 392 --NGVLYSGS-RDG-----------------------TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (538)
Q Consensus 392 --~~~l~s~s-~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 445 (538)
+..++..+ .++ .|.+||+.+++.. .+...........++++|++++++++ +
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 33333322 222 4789999998875 33221122223347999999999988 7
Q ss_pred CcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 446 GSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 446 g~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
+.|.+||... ....+..+ ..+.++.+ ++++|++++.++.|++||+.+++......
T Consensus 260 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 8999999654 34444432 23445554 89999999999999999999887665544
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-18 Score=166.11 Aligned_cols=115 Identities=14% Similarity=0.199 Sum_probs=80.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+...... .++++|||.|||||++ .+ ..|++++|||||||+||||++|+
T Consensus 206 ~g~vKl~DFGla~~~~~~~~~--~~~~~GTp~YmAPEvl------~~---------~~y~~~~DiWSlGvilyeml~G~~ 268 (346)
T 4fih_A 206 DGRVKLSDFGFCAQVSKEVPR--RKSLVGTPYWMAPELI------SR---------LPYGPEVDIWSLGIMVIEMVDGEP 268 (346)
T ss_dssp TCCEEECCCTTCEECCSSSCC--BCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEecCcCceecCCCCCc--ccccccCcCcCCHHHH------CC---------CCCCcHHHHHHHHHHHHHHHHCCC
Confidence 4568999 788887654322 5679999999999999 44 56899999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+........ ..... .......++.+++.+||.++|.+||++.++.+
T Consensus 269 PF~~~~~~~~~~~i~~~~------~~~~~------------~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 269 PYFNEPPLKAMKMIRDNL------PPRLK------------NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp TTTTSCHHHHHHHHHHSS------CCCCS------------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCcCHHHHHHHHHcCC------CCCCC------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 998765442220000000 00000 00011224778999999999999999887654
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-19 Score=164.44 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=74.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+...+.... .++++|||.|||||++ .+ ..|++++|||||||+||||+||+
T Consensus 162 ~g~vKl~DFGla~~~~~~~~~--~~~~~GT~~YmAPE~~------~~---------~~y~~~~DiwSlGvilyemltG~~ 224 (304)
T 3ubd_A 162 EGHIKLTDFGLSKESIDHEKK--AYSFCGTVEYMAPEVV------NR---------RGHTQSADWWSFGVLMFEMLTGTL 224 (304)
T ss_dssp TSCEEEESSEEEEC-----CC--CCSCCCCGGGCCHHHH------HT---------SCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEecccccceeccCCCcc--ccccccCcccCCHHHh------cc---------CCCCCCCcccchHHHHHHHHhCCC
Confidence 4568998 888876554432 5579999999999999 44 56889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
||.+.+...+.....+ ..+.. .....+++.+++.+||+++|.+||++.
T Consensus 225 PF~~~~~~~~~~~i~~---------~~~~~------------p~~~s~~~~~li~~~L~~dP~~R~ta~ 272 (304)
T 3ubd_A 225 PFQGKDRKETMTMILK---------AKLGM------------PQFLSPEAQSLLRMLFKRNPANRLGAG 272 (304)
T ss_dssp SSCCSSHHHHHHHHHH---------CCCCC------------CTTSCHHHHHHHHHHTCSSGGGSTTCS
T ss_pred CCCCcCHHHHHHHHHc---------CCCCC------------CCcCCHHHHHHHHHHcccCHHHCCCCC
Confidence 9998655522200000 00000 001122478899999999999999964
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-14 Score=141.36 Aligned_cols=260 Identities=14% Similarity=0.120 Sum_probs=156.7
Q ss_pred CCcEEEEeCC--CCceEE-EEecCCcCeEEEEEecCCCCEEEEEcC--CCcEEEEEccCCCCCcceeeecccCCceeeeE
Q 009274 271 DKSIHVWSLK--DFSHVH-TFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI 345 (538)
Q Consensus 271 dg~i~iwd~~--~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 345 (538)
++.|.+|+++ +++... ....+......++|+|++. +++++.. ++.|++||+.++.. ..+....... .....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~--~~p~~ 90 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPG--TPPAY 90 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEES--CCCSE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCC--CCCEE
Confidence 5567777664 555433 2334556778899999777 6555543 78999999965432 1222211111 11224
Q ss_pred EEEeecCCEEEEee-CCCcEEEEECCC-Cc--eeEEecC---------CCCCeEEEEEe--CCEEEEEecCCcEEEEECC
Q 009274 346 HALTTSGRYLYTGS-GDRTIKAWSLLD-GT--LSCTMSG---------HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLS 410 (538)
Q Consensus 346 ~~~~~~~~~l~sg~-~dg~i~iwd~~~-~~--~~~~~~~---------h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 410 (538)
.++++++++|++++ .++.|.+||+.. +. .+..+.. +...+.+++|+ ++++++...++.|.+||+.
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 58899999888887 689999999963 32 3333321 12348889999 4456666678899999998
Q ss_pred -CCceeE--EEecCCCCceEEEEEEcCCCCEEEE-EeCCCcEEEEeCCc---c---eeeecccc------ceEEEEEe--
Q 009274 411 -DHSLLT--VLEEDSSGAVSSVLSLTAVQHTLVV-SHESGSIKVWRNDK---F---MKSMQTHK------GSVFAVFL-- 472 (538)
Q Consensus 411 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~---~---~~~~~~h~------~~v~~~~~-- 472 (538)
+++... .+... .+.....++|+|+|+++++ +..++.+.+|+... . ...+.... ..+..+.+
T Consensus 171 ~~g~~~~~~~~~~~-~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 171 DAGQLSEQSVLTME-AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TTSCEEEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCcEEEeeeEEcC-CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 554332 22222 2222333799999996666 45688999998442 1 22222221 34555655
Q ss_pred CCCEE-EEEeCCCeEEEEecCCC-eeEeeeecCCcccCCCceEEEEEeCCE-EEEEEC-CCeEEEEEcC
Q 009274 473 EGKWL-FTGGWDKTVSVQELAGD-EFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCA-DRTVKVYYYG 537 (538)
Q Consensus 473 ~~~~l-~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~-dg~v~vw~~~ 537 (538)
+|++| ++...++.|.+|++... .......... ....+....+.+++. |++++. ++.|.+|++.
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 89877 55667899999999732 2211111110 011233444556665 777665 5999999663
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=158.76 Aligned_cols=256 Identities=14% Similarity=0.061 Sum_probs=180.3
Q ss_pred ceeeeeccCcceeEEeec-CCeEEEEEeec--------CC-CcEEEEEEc-CCEEEEEeC---CCcEEEEeCCC---Cce
Q 009274 222 IDQARAAGGVKDLVNGLS-KGNVKFKDLQG--------HR-DCVTGLAVG-GGFLFSSSF---DKSIHVWSLKD---FSH 284 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~--------h~-~~V~~l~~~-~~~l~s~s~---dg~i~iwd~~~---~~~ 284 (538)
+..+.++++++.++.... ++...+|.+.+ |. ..+.+++|+ ++.+++++. +...++|.+.. +..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~ 103 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEE 103 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCC
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCcc
Confidence 567778888888887665 88888888643 44 588999999 656666654 45566665432 333
Q ss_pred EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC---
Q 009274 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD--- 361 (538)
Q Consensus 285 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--- 361 (538)
. .+..+ ..+...+|+|+++.++++.+.++.+.+||+.+++...... ... ...+++|||+++++++.+
T Consensus 104 ~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~----~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 104 Q-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPG----FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp E-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESS----CEEEEEEETTEEEEEEEEETT
T ss_pred c-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCC----ceEEECCCCCEEEEEEEcCCC
Confidence 3 33322 2345678999888766666666666699998764322111 111 345899999999988877
Q ss_pred -CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCC--cEEEEECCCCceeEEEecCCCCceEE-------E
Q 009274 362 -RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG--TIRLWSLSDHSLLTVLEEDSSGAVSS-------V 429 (538)
Q Consensus 362 -g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-------~ 429 (538)
+.|++||+.+++.. .+..|...+.+++|+ ++.|+++..++ .|++||+.+++.. .+..+ ...+.. .
T Consensus 174 ~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEE
T ss_pred CeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhhhccccc
Confidence 78999999888765 667888999999999 45788888888 8999999998876 44433 221111 1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCcceeeeccccceEEEEEe-CCCEEEEEeCCCe---EEEEecCC
Q 009274 430 LSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL-EGKWLFTGGWDKT---VSVQELAG 493 (538)
Q Consensus 430 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~~~~-~~~~l~sgs~dg~---v~iwd~~~ 493 (538)
.+|+|||.++++++.|+.+++|+.++... .+.+.+.++++ +++++++++.+.. +++||..+
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~g~~~~---~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFIDGERVE---APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEETTEEEC---CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEECCeec---cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcCCC
Confidence 23999999999999999999999832222 34456766665 8888888887744 77777665
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-18 Score=164.36 Aligned_cols=115 Identities=14% Similarity=0.210 Sum_probs=80.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+...... .++++|||.|||||++ .+ ..|++++|||||||+||||++|+
T Consensus 283 ~g~vKl~DFGla~~~~~~~~~--~~~~~GTp~YmAPEvl------~~---------~~y~~~~DiWSlGvilyeml~G~~ 345 (423)
T 4fie_A 283 DGRVKLSDFGFCAQVSKEVPR--RKSLVGTPYWMAPELI------SR---------LPYGPEVDIWSLGIMVIEMVDGEP 345 (423)
T ss_dssp TCCEEECCCTTCEECCSSCCC--BCCCEECTTTCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEecCccceECCCCCcc--ccccccCcCcCCHHHH------CC---------CCCCcHHHHHHHHHHHHHHHHCCC
Confidence 4568999 888887654322 5679999999999999 44 67899999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+....... .+.. ..........+.+++.+||.++|.+||++.++.+
T Consensus 346 PF~~~~~~~~~~~i~~~---------~~~~---------~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 346 PYFNEPPLKAMKMIRDN---------LPPR---------LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTTTSCHHHHHHHHHHS---------CCCC---------CSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCcCHHHHHHHHHcC---------CCCC---------CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 99876544222000000 0000 0000111234788999999999999999887654
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-17 Score=158.38 Aligned_cols=139 Identities=10% Similarity=0.063 Sum_probs=80.2
Q ss_pred eeeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 11 KSVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
+..+|++ |||+......... ...+.+||+.|||||++ .+. .....+.++.++|||||||+||||+||
T Consensus 144 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l------~~~---~~~~~~~~~~k~DVwS~Gvvl~El~tg 214 (303)
T 3hmm_A 144 NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL------DDS---INMKHFESFKRADIYAMGLVFWEIARR 214 (303)
T ss_dssp TSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHH------TTC---SCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHh------ccc---ccccCCccChhHhhhhHHHHHHHHHHC
Confidence 4679999 8888776554321 13357999999999999 320 000124678899999999999999999
Q ss_pred C-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh----hcC------ccchHHHHHhhhhccCCCCCcch
Q 009274 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK----FGS------EFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
. ||............ ..............+.... .+. ....+.+++.+||+.+|.+||++
T Consensus 215 ~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~ 285 (303)
T 3hmm_A 215 CSIGGIHEDYQLPYYD---------LVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTA 285 (303)
T ss_dssp BCBTTBCCCCCCTTTT---------TSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCH
T ss_pred CCCCCccccccccchh---------cccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCH
Confidence 8 66442211000000 0000000000000000000 000 01136789999999999999999
Q ss_pred hhHHHHHHHhhc
Q 009274 156 TNVWKCIRELII 167 (538)
Q Consensus 156 ~~~~~~l~~l~~ 167 (538)
.++.+.+.++..
T Consensus 286 ~ei~~~L~~l~~ 297 (303)
T 3hmm_A 286 LRIKKTLSQLSQ 297 (303)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-13 Score=132.52 Aligned_cols=259 Identities=10% Similarity=0.146 Sum_probs=154.4
Q ss_pred CCCcEEEEeC--CCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC----CcEEEEEccCC-CCCcceeeecccCCcee
Q 009274 270 FDKSIHVWSL--KDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG----GGIFVWSFSFP-LGHEPLKKWNEEKDWRY 342 (538)
Q Consensus 270 ~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~-~~~~~~~~~~~~~~~~~ 342 (538)
.++.|.+|++ .+++.......+......++|+|++. ++++++.+ +.|.+|++... .....+........
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~--- 100 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA--- 100 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS---
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC---
Confidence 4678888876 45554332222667778899999765 55555554 89999998764 22222222211111
Q ss_pred eeEEEEeecCCEEEEee-CCCcEEEEECCCCceeEEe------cC--------CCCCeEEEEEe--CCEEEEEe-cCCcE
Q 009274 343 SGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTM------SG--------HKSAVSTLAVC--NGVLYSGS-RDGTI 404 (538)
Q Consensus 343 ~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~------~~--------h~~~v~~l~~~--~~~l~s~s-~dg~i 404 (538)
....+..+++++++++ .++.|.+|++.....+..+ .+ +...+.+++|+ ++++++++ .++.|
T Consensus 101 -~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v 179 (361)
T 3scy_A 101 -DPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI 179 (361)
T ss_dssp -CEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred -CcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence 1223344888777766 5789999999754332211 11 12345889999 44555554 58899
Q ss_pred EEEECCCCce------e------EEEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCc--c--eeeec---ccc
Q 009274 405 RLWSLSDHSL------L------TVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK--F--MKSMQ---THK 464 (538)
Q Consensus 405 ~iwd~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~--~~~~~---~h~ 464 (538)
.+|++..... + .......... ...++|+|+|+++++++ .++.|.+||... . ...+. .+.
T Consensus 180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSG-PRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC-EEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred EEEEEcCCCCcccccceeecccccceecCCCCC-CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC
Confidence 9999875431 1 1222222222 33479999999888777 689999999542 1 22222 222
Q ss_pred ceEEEEEe--CCCEEEEEeCC--CeEEEEecC--CCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEE-CCCeEEEEEc
Q 009274 465 GSVFAVFL--EGKWLFTGGWD--KTVSVQELA--GDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGC-ADRTVKVYYY 536 (538)
Q Consensus 465 ~~v~~~~~--~~~~l~sgs~d--g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~-~dg~v~vw~~ 536 (538)
....++.+ ||++|+++..+ +.|.+|++. +++......... ...+....+.+++. |++++ .++.|.+|++
T Consensus 259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 33455555 99988776665 899999996 344322211111 11233444556665 66666 6799999876
Q ss_pred C
Q 009274 537 G 537 (538)
Q Consensus 537 ~ 537 (538)
.
T Consensus 336 d 336 (361)
T 3scy_A 336 D 336 (361)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-17 Score=157.05 Aligned_cols=113 Identities=21% Similarity=0.276 Sum_probs=66.6
Q ss_pred eeeeeec--cccccccccchhh----------hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhh
Q 009274 11 KSVAKVG--CVGSRICDKEVGL----------FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVAC 78 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~----------~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~ 78 (538)
++..|++ |+|+.++...... ..++.+|||.|||||++ .| ..|++++|||||||
T Consensus 154 ~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~------~~---------~~y~~~~DiwSlGv 218 (299)
T 4g31_A 154 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI------HG---------NSYSHKVDIFSLGL 218 (299)
T ss_dssp TCCEEECCCCCC--------------------------CCCTTSCHHHH------TT---------CCCCTHHHHHHHHH
T ss_pred CCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHH------cC---------CCCCCHHHHHHHHH
Confidence 4578999 8888876543221 13457999999999999 54 57889999999999
Q ss_pred hhhhhhhcCccchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 79 ILLSLLIGEQFTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 79 ~l~~lltg~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
+||||++ ||...... ... .... ....++.+ +.. .+.+.+++.+||+.+|.+||++.+
T Consensus 219 ilyell~--Pf~~~~~~~~~~-~~~~-------~~~~p~~~----~~~--------~~~~~~li~~~L~~dP~~Rps~~e 276 (299)
T 4g31_A 219 ILFELLY--PFSTQMERVRTL-TDVR-------NLKFPPLF----TQK--------YPCEYVMVQDMLSPSPMERPEAIN 276 (299)
T ss_dssp HHHHHHS--CCSSHHHHHHHH-HHHH-------TTCCCHHH----HHH--------CHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHHHHcc--CCCCccHHHHHH-HHHh-------cCCCCCCC----ccc--------CHHHHHHHHHHcCCChhHCcCHHH
Confidence 9999997 77654322 100 0000 00111111 111 112567899999999999999887
Q ss_pred HHH
Q 009274 158 VWK 160 (538)
Q Consensus 158 ~~~ 160 (538)
+.+
T Consensus 277 il~ 279 (299)
T 4g31_A 277 IIE 279 (299)
T ss_dssp HHT
T ss_pred Hhc
Confidence 654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=156.26 Aligned_cols=267 Identities=9% Similarity=-0.026 Sum_probs=167.1
Q ss_pred EEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCc---CeEEEEEecCCCCEEEEEcC---------CCcEEEEEcc
Q 009274 257 GLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH---KVMAVVYVDEDQPLCISGDS---------GGGIFVWSFS 323 (538)
Q Consensus 257 ~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~ 323 (538)
+++|+ ...++..+.|++|++||+.+++....+..|.. .+.+++|+|++..+ ++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~l-a~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFV-YLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEE-EEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeE-EEEecCceeEEeecceEEEEEECC
Confidence 56777 33455555799999999999998877766544 48999999976654 55544 7899999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe-cCCCCCe-----------------
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM-SGHKSAV----------------- 385 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v----------------- 385 (538)
+++...... .. ......+++|||+.|+.+. ++.|++||+.+++..... .++...|
T Consensus 99 ~g~~~~~~~-l~-----~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 99 NGEFVRGNE-LP-----RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTEECCSSC-CC-----SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCcccccee-cC-----cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 765411011 11 1122468999999999886 689999999888765432 2333222
Q ss_pred EEEEEe--CCEEEEEecCC----------------------------------cEEEEECCCCcee--EEEec-----CC
Q 009274 386 STLAVC--NGVLYSGSRDG----------------------------------TIRLWSLSDHSLL--TVLEE-----DS 422 (538)
Q Consensus 386 ~~l~~~--~~~l~s~s~dg----------------------------------~i~iwd~~~~~~~--~~~~~-----~~ 422 (538)
.+++|+ ++.|++++.|. .|++||+.+++.. ..+.. .+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 489999 45888887652 7889999887653 12211 12
Q ss_pred CCceEEEEEEcCCCCEEEEEeCC----CcEEEEe----CCc--ceeee----ccccceEE-----EE--EeCCCEEEE--
Q 009274 423 SGAVSSVLSLTAVQHTLVVSHES----GSIKVWR----NDK--FMKSM----QTHKGSVF-----AV--FLEGKWLFT-- 479 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~--~~~~~----~~h~~~v~-----~~--~~~~~~l~s-- 479 (538)
.. ....++|+||++++++.... ..|.+|| ... ....+ ..|...+. .+ ++||+.++.
T Consensus 252 ~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 252 DY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp CE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred cc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 22 33446899998777764432 2488889 543 23333 35555544 33 458885544
Q ss_pred EeCCC--eEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEEC-----CCeEEEEEcC
Q 009274 480 GGWDK--TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCA-----DRTVKVYYYG 537 (538)
Q Consensus 480 gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-----dg~v~vw~~~ 537 (538)
...+| .|.+||+.+++....... ...+....+++++.++..+. ++..++|.+.
T Consensus 331 ~~~~g~~~l~~~~~~~~~~~~lt~~-----~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVENAIQITSG-----KWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp ECTTSCEEEEEESSCSTTCEECSCS-----SSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EccCCceEEEEEECCCCceEecccC-----ceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEe
Confidence 44555 577778877653322111 11223334444455665554 4889999763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-12 Score=123.99 Aligned_cols=237 Identities=11% Similarity=0.185 Sum_probs=161.5
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec------CCcCeEEEEEecCCCCEEEEEcC-CCcEEE
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG------HDHKVMAVVYVDEDQPLCISGDS-GGGIFV 319 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~~~-dg~i~v 319 (538)
.+|-..+.+++++ ++++++.+.++.|.+||.+ ++.+..+.. +...+.++++.+.++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3566789999998 7778887889999999987 666666642 34578899996555666666643 899999
Q ss_pred EEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEe-CC-EE
Q 009274 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC-NG-VL 395 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~~-~l 395 (538)
||.. +.. +..+..... .....++++++++.+++...++.|++||. .++.+..+. .+...+.+++++ ++ ++
T Consensus 105 ~d~~-g~~---~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 105 YNQY-GQF---VRKFGATIL-QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp ECTT-SCE---EEEECTTTC-SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred ECCC-CcE---EEEecCccC-CCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 9943 322 222211111 11234577888888887778899999996 456666553 445678999999 34 55
Q ss_pred EEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC-cEEEEeCC-cceeeeccccc--eEEEEE
Q 009274 396 YSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG-SIKVWRND-KFMKSMQTHKG--SVFAVF 471 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~-~~~~~~~~h~~--~v~~~~ 471 (538)
++.+.++.|++||. +++.+..+...........++++++|+++++...++ .|.+||.. +.+..+..+.. .+.+++
T Consensus 179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~ 257 (286)
T 1q7f_A 179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA 257 (286)
T ss_dssp EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE
T ss_pred EEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEE
Confidence 55567899999997 455666654321112233479999999888887776 99999954 34555544432 355555
Q ss_pred e--CCCEEEEEeCCCeEEEEecCCC
Q 009274 472 L--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 472 ~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
+ +|+++++ +.|++|++|++...
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ECCCCcEEEE-CCCCeEEEEEcccc
Confidence 4 7776666 67999999998653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=139.84 Aligned_cols=221 Identities=10% Similarity=0.063 Sum_probs=145.8
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEE-EeeCCCcEEEEECCCCceeEE
Q 009274 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCT 377 (538)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~ 377 (538)
++++ ++.++++++.++.|++||..+++....+.. ... ......++++++++++ ++..++.|.+||+.+++.+..
T Consensus 6 ~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 6 ALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM---PDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC---SSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec---CCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 4444 566889999999999999987643332221 110 0122457899998654 555789999999999988877
Q ss_pred ecCCC------CCeEEEEEe--CCEEEEEecC------------CcEEEEECCCCce---eEEEecCCCCceEEEEEEcC
Q 009274 378 MSGHK------SAVSTLAVC--NGVLYSGSRD------------GTIRLWSLSDHSL---LTVLEEDSSGAVSSVLSLTA 434 (538)
Q Consensus 378 ~~~h~------~~v~~l~~~--~~~l~s~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~ 434 (538)
+..+. ..+.+++|+ ++++++++.+ +.|.+||+.+++. +..+..+. .+. .++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~-~~~~s~ 157 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR--QVY-LMRAAD 157 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS--SCC-CEEECT
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC--ccc-ceeECC
Confidence 75332 237889998 4588888765 8999999988543 33343322 222 368999
Q ss_pred CCCEEEEEeCCCcEEEEeCC--cceeeecccc-------------------------c----------------------
Q 009274 435 VQHTLVVSHESGSIKVWRND--KFMKSMQTHK-------------------------G---------------------- 465 (538)
Q Consensus 435 ~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~-------------------------~---------------------- 465 (538)
+++ +++++. .|.+||.. +....+..+. .
T Consensus 158 dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 666543 49999954 3333332221 0
Q ss_pred ---------------------eEE--EEEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC-
Q 009274 466 ---------------------SVF--AVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG- 520 (538)
Q Consensus 466 ---------------------~v~--~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 520 (538)
.+. ++++ ++++++++ ++.|++||+.+++......... .+....+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~ 307 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-----TYYCVAFDKKGD 307 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-----CCCEEEECSSSS
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-----CccceEECCCCC
Confidence 111 2235 78888888 8899999999988765544321 13344445554
Q ss_pred EEEEEECCCeEEEEEcC
Q 009274 521 KLFVGCADRTVKVYYYG 537 (538)
Q Consensus 521 ~l~sg~~dg~v~vw~~~ 537 (538)
.|++++.++.|++||..
T Consensus 308 ~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp CEEEESBSSEEEEEETT
T ss_pred EEEEecCCCeEEEEecc
Confidence 57788889999999985
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-13 Score=130.19 Aligned_cols=265 Identities=11% Similarity=0.091 Sum_probs=159.0
Q ss_pred EEEEEeCC--CcEEEEeC--CCCceEE--EEe-cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc-CCCCCcceeeec
Q 009274 264 FLFSSSFD--KSIHVWSL--KDFSHVH--TFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-FPLGHEPLKKWN 335 (538)
Q Consensus 264 ~l~s~s~d--g~i~iwd~--~~~~~~~--~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~ 335 (538)
+++.|+.. +.|.+|++ .+++... ... .+...+..++|+|++. ++++++.+ .|.+|++. +++... .....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~ 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIVH-EASHP 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEEE-EEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEEE-eeEee
Confidence 45566653 56887765 4565432 221 2334678899999665 55677766 99999997 443211 11111
Q ss_pred ccCCceeeeEEEEeecCCE--EEEee-------------CCCcEEEEECC-CCceeEEec----CCCCCeEEEEEe--CC
Q 009274 336 EEKDWRYSGIHALTTSGRY--LYTGS-------------GDRTIKAWSLL-DGTLSCTMS----GHKSAVSTLAVC--NG 393 (538)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~--l~sg~-------------~dg~i~iwd~~-~~~~~~~~~----~h~~~v~~l~~~--~~ 393 (538)
.. . . ....+++|+|++ +++++ .+|.+.+|++. .++....+. .+...+.+++|+ ++
T Consensus 81 ~~-g-~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 81 IG-G-H-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp CC-S-S-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred cC-C-C-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 00 1 1 112477889984 55553 68999999997 466544433 255679999999 44
Q ss_pred EEEEEe-cCCcEEEEECC-CCcee--EEEecCCCCceEEEEEEcCCCCEEEEEeC-CCcEEEEeCC----cce---eeec
Q 009274 394 VLYSGS-RDGTIRLWSLS-DHSLL--TVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRND----KFM---KSMQ 461 (538)
Q Consensus 394 ~l~s~s-~dg~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~----~~~---~~~~ 461 (538)
+++++. .++.|++||+. +++.. ..+.....+.....++|+|+|+++++++. ++.|.+|+.. +.. ..+.
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 677665 46899999998 67653 22332111222334799999999988775 6899999742 221 1121
Q ss_pred -------cccc------eEEEEE-e--CCCEEEEEeCCC------eEEEEecC-CCeeEeee--ecCCcccCCCceEEEE
Q 009274 462 -------THKG------SVFAVF-L--EGKWLFTGGWDK------TVSVQELA-GDEFEEDV--IPTGAIPCGSVITALL 516 (538)
Q Consensus 462 -------~h~~------~v~~~~-~--~~~~l~sgs~dg------~v~iwd~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 516 (538)
+|.. .+.++. + ||++|++++.+. .|.+|++. ++++.... .... ........+
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~---~~~~~~~a~ 314 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP---TSGGHSNAV 314 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS---SCCTTCCCE
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC---CCCccccee
Confidence 2222 455666 4 899888776432 89999996 55543211 1110 111222334
Q ss_pred Ee---CC-EEEEEEC-CCeEEEEEcC
Q 009274 517 YW---QG-KLFVGCA-DRTVKVYYYG 537 (538)
Q Consensus 517 ~~---~~-~l~sg~~-dg~v~vw~~~ 537 (538)
.+ ++ .|++++. ++.|.+|++.
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 55 44 5777765 5999999874
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-13 Score=130.84 Aligned_cols=244 Identities=11% Similarity=0.092 Sum_probs=157.6
Q ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCC-CCceEEEEecC-CcCeEEEEEecCCCC-EEEEEc-------------
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK-DFSHVHTFKGH-DHKVMAVVYVDEDQP-LCISGD------------- 312 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~-~l~s~~------------- 312 (538)
+...+..++++ +++|++++.+ .|.+|++. +++........ .+...+++|+|++.. ++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44567889998 8889999888 99999997 77765433211 123556888887765 345553
Q ss_pred CCCcEEEEEccC-CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-CCcEEEEECC-CCcee--EEec--CCCCCe
Q 009274 313 SGGGIFVWSFSF-PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLL-DGTLS--CTMS--GHKSAV 385 (538)
Q Consensus 313 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~-~~~~~--~~~~--~h~~~v 385 (538)
.+|.+.+|++.. +.....+........ ......+++|+|++++++.. ++.|++||+. +++.. ..+. .|...+
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQEN-TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTT-CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCC-CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 689999999974 322222222111111 12234588999998887654 6899999998 67653 3333 245678
Q ss_pred EEEEEe--CCEEEEEec-CCcEEEEECC--CCceeE---EEecCC---CC-c-------eEEEEE-EcCCCCEEEEEeCC
Q 009274 386 STLAVC--NGVLYSGSR-DGTIRLWSLS--DHSLLT---VLEEDS---SG-A-------VSSVLS-LTAVQHTLVVSHES 445 (538)
Q Consensus 386 ~~l~~~--~~~l~s~s~-dg~i~iwd~~--~~~~~~---~~~~~~---~~-~-------~~~~~~-~~~~~~~l~~~~~d 445 (538)
..++|+ ++++++++. ++.|.+|++. +++... .+.... .+ . ....++ ++|||++|+++..+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 999999 447777664 7899999875 565432 222111 11 1 234468 99999998877643
Q ss_pred C------cEEEEeCCc--ceee----ecccc--ceEEEEEe---CCCEEEEEeCC-CeEEEEecCCCee
Q 009274 446 G------SIKVWRNDK--FMKS----MQTHK--GSVFAVFL---EGKWLFTGGWD-KTVSVQELAGDEF 496 (538)
Q Consensus 446 g------~i~iwd~~~--~~~~----~~~h~--~~v~~~~~---~~~~l~sgs~d-g~v~iwd~~~~~~ 496 (538)
. .|.+|+... .+.. ...+. ..-.++++ +|++|++++.+ +.|.+|++....+
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 2 899998631 2221 22222 22245677 79999999875 8999999987643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-13 Score=132.93 Aligned_cols=287 Identities=9% Similarity=-0.002 Sum_probs=178.3
Q ss_pred EEEEeecCCCcEEE-----EEEc--CCEEEEEeC-CCc--EEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcC
Q 009274 244 KFKDLQGHRDCVTG-----LAVG--GGFLFSSSF-DKS--IHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS 313 (538)
Q Consensus 244 ~i~~l~~h~~~V~~-----l~~~--~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 313 (538)
.+..+..|...... .+|+ |++|+.++. ++. |.+||+.+++......++...+..+.|+|++. .|+.++.
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~-~l~~~~~ 100 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD-ALFYVKD 100 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS-EEEEEET
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC-EEEEEeC
Confidence 45667777766666 7788 888888887 664 88889999888777667766666778999665 5677777
Q ss_pred CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEe----------------------eCCCcEEEEECCC
Q 009274 314 GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTG----------------------SGDRTIKAWSLLD 371 (538)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg----------------------~~dg~i~iwd~~~ 371 (538)
++.|++||+.+++..... ..+..........++++++.++.. ..+..|++||+.+
T Consensus 101 ~~~l~~~d~~~g~~~~~~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVY---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp TTEEEEEETTTCCEEEEE---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred CCeEEEEECCCCcceeee---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 889999999876533221 112221111223457888877642 2457899999998
Q ss_pred CceeEEecCCCCCeEEEEEeC-C--EEEEEecC------CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 009274 372 GTLSCTMSGHKSAVSTLAVCN-G--VLYSGSRD------GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 372 ~~~~~~~~~h~~~v~~l~~~~-~--~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
++.... ..+...+..++|++ + .|+.++.+ ..|.++|...++. ..+..+..........|+|||+.|+..
T Consensus 178 g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 178 GESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp CCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEE
Confidence 865443 34667789999986 3 66666543 3788888866543 333333222233346899999977654
Q ss_pred eC-CC----cEEEEeCCcc----eeeeccccceE-----EEEEeCCCEEEEE---------eCCCeEEEEecCCCeeEee
Q 009274 443 HE-SG----SIKVWRNDKF----MKSMQTHKGSV-----FAVFLEGKWLFTG---------GWDKTVSVQELAGDEFEED 499 (538)
Q Consensus 443 ~~-dg----~i~iwd~~~~----~~~~~~h~~~v-----~~~~~~~~~l~sg---------s~dg~v~iwd~~~~~~~~~ 499 (538)
+. ++ .|++||.... +..+.++.... ..+++||+.|+.. ..+..|++||+.+++....
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV 335 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE
T ss_pred ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence 43 22 3999996532 22222211111 1467788877754 4567899999999876554
Q ss_pred eecCCccc------CCCceEEEEEeCCE-EEE-EECCCeEEEEEc
Q 009274 500 VIPTGAIP------CGSVITALLYWQGK-LFV-GCADRTVKVYYY 536 (538)
Q Consensus 500 ~~~~~~~~------~~~~~~~~~~~~~~-l~s-g~~dg~v~vw~~ 536 (538)
..+..... ........+.+|+. |+. +..+|...+|.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 44332000 00122334556764 544 556787788765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-13 Score=142.34 Aligned_cols=280 Identities=9% Similarity=-0.016 Sum_probs=173.8
Q ss_pred EeecCCCcEEEEEEcCCEEEEE----eCCCcEEEEeCCCCceEEEEecCCcCeE---------EEEEe--cCCCC-EEEE
Q 009274 247 DLQGHRDCVTGLAVGGGFLFSS----SFDKSIHVWSLKDFSHVHTFKGHDHKVM---------AVVYV--DEDQP-LCIS 310 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~~-~l~s 310 (538)
.+.+|...+..++++++.++-. +.++...||....+.....+..|...+. ...|+ |+++. ++++
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 4678999999999995544433 3478899999655555667777766666 66676 88887 6666
Q ss_pred EcCCCcEEEEEcc--CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC----------CcEEEEECCC------C
Q 009274 311 GDSGGGIFVWSFS--FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD----------RTIKAWSLLD------G 372 (538)
Q Consensus 311 ~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d----------g~i~iwd~~~------~ 372 (538)
...+..|.+|++. .......+...............+++|||+.|++++.+ ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 5556777777765 20222222211100011223356899999999988877 5899999987 4
Q ss_pred ceeEEec-CCCCCeEEEEEe--CCEEEEEecC--------CcEEEEECC-CCc--eeEEEecCCCCceEEEEEEcCCCCE
Q 009274 373 TLSCTMS-GHKSAVSTLAVC--NGVLYSGSRD--------GTIRLWSLS-DHS--LLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 373 ~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
+. ..+. .+...+..++|+ +++|+.++.+ ..|++||+. +++ ....+...+...... ..|+|||++
T Consensus 178 ~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~-~~~spdg~l 255 (662)
T 3azo_A 178 AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ-AEWAPDGSL 255 (662)
T ss_dssp GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE-EEECTTSCE
T ss_pred ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc-eEECCCCeE
Confidence 44 4555 566778889999 4578777755 379999998 562 333343332333333 689999998
Q ss_pred EEEEeCCC--cEEEEeCC-cceeee-ccccce--------EEEEEe--CCCEEEEEeCCCeEEEE--ecCCCeeEeeeec
Q 009274 439 LVVSHESG--SIKVWRND-KFMKSM-QTHKGS--------VFAVFL--EGKWLFTGGWDKTVSVQ--ELAGDEFEEDVIP 502 (538)
Q Consensus 439 l~~~~~dg--~i~iwd~~-~~~~~~-~~h~~~--------v~~~~~--~~~~l~sgs~dg~v~iw--d~~~~~~~~~~~~ 502 (538)
++++..++ .|.+||.. .....+ ..+... +.++.+ +++++++++. +.+++| |+.+++......+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC
Confidence 88888888 55666642 222223 222221 334554 7889999988 999999 6666664332211
Q ss_pred CCcccCCCceEEE-EEeCCE-EEE-EECCCeEEEEE
Q 009274 503 TGAIPCGSVITAL-LYWQGK-LFV-GCADRTVKVYY 535 (538)
Q Consensus 503 ~~~~~~~~~~~~~-~~~~~~-l~s-g~~dg~v~vw~ 535 (538)
...+..+ ..+++. +++ ++.+....+|.
T Consensus 335 ------~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 335 ------WTEWAATLTVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp ------CCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ------CCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence 2233444 444554 333 55555555554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-14 Score=150.92 Aligned_cols=264 Identities=10% Similarity=0.074 Sum_probs=163.6
Q ss_pred eeccCcceeEEeecCCeEEEEEee---------cCCC---cEEEEEEc--CCEEEEEeC---------CCcEEEEeCCCC
Q 009274 226 RAAGGVKDLVNGLSKGNVKFKDLQ---------GHRD---CVTGLAVG--GGFLFSSSF---------DKSIHVWSLKDF 282 (538)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~l~---------~h~~---~V~~l~~~--~~~l~s~s~---------dg~i~iwd~~~~ 282 (538)
.+++++. ++....++.+.+|+.. +|.. .|.+++|+ |++|++++. |+.|++||+.++
T Consensus 22 ~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 22 NWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp EESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 3344443 3333345666666643 2322 38899999 899998876 789999999988
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec------ccCCc-------eeeeEEEEe
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN------EEKDW-------RYSGIHALT 349 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~~~~-------~~~~~~~~~ 349 (538)
+.+.. ......+..++|+|++..++++ .++.|++||+.++.......... ....+ ......+|+
T Consensus 101 ~~~~~-~~l~~~~~~~~~SPDG~~la~~--~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 101 EFVRG-NELPRPIQYLCWSPVGSKLAYV--YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp EECCS-SCCCSSBCCEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred ccccc-eecCcccccceECCCCCEEEEE--ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 76210 1113568899999988766444 37899999998765322111100 00000 001246899
Q ss_pred ecCCEEEEeeCCC----------------------------------cEEEEECCCCcee--------EEecCCCCCeEE
Q 009274 350 TSGRYLYTGSGDR----------------------------------TIKAWSLLDGTLS--------CTMSGHKSAVST 387 (538)
Q Consensus 350 ~~~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~--------~~~~~h~~~v~~ 387 (538)
|||++|++++.|. .|++||+.+++.. ..+.+|...+.+
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 9999999987652 7899999887653 223468888999
Q ss_pred EEEe-CC-EEEEEecC----CcEEEEE----CCCCceeEEEe---cCCCCceE----EEEEEcCCCCEEEE--EeCCCc-
Q 009274 388 LAVC-NG-VLYSGSRD----GTIRLWS----LSDHSLLTVLE---EDSSGAVS----SVLSLTAVQHTLVV--SHESGS- 447 (538)
Q Consensus 388 l~~~-~~-~l~s~s~d----g~i~iwd----~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~l~~--~~~dg~- 447 (538)
++|+ ++ ++++.... ..|.+|| +.+++....+. ..+.+.+. ....|+|||+.++. +..+|.
T Consensus 258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence 9999 44 44443322 2488999 77776544432 22222222 12589999986554 445664
Q ss_pred -EEEEeCCc-ceeeeccccceEEEEEe-CCCEEEEEeCC-----CeEEEEecCC
Q 009274 448 -IKVWRNDK-FMKSMQTHKGSVFAVFL-EGKWLFTGGWD-----KTVSVQELAG 493 (538)
Q Consensus 448 -i~iwd~~~-~~~~~~~h~~~v~~~~~-~~~~l~sgs~d-----g~v~iwd~~~ 493 (538)
|.+||... ....+..+...+..+.+ +++.|+..+.+ +..++|.+..
T Consensus 338 ~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 338 HIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEECCCCceEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeC
Confidence 55566432 34455555555554432 78777776665 8889998754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-12 Score=120.13 Aligned_cols=237 Identities=10% Similarity=0.144 Sum_probs=153.2
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeeccc----CCceeeeEEEEe-ecCCEEEEeeC-CCcE
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE----KDWRYSGIHALT-TSGRYLYTGSG-DRTI 364 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~l~sg~~-dg~i 364 (538)
+-....++++.+++ .++++...++.|.+||... .. +..+... .........++. ++++.+++... ++.|
T Consensus 28 ~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g-~~---~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEG-RF---KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTS-CE---EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred ccCCCceEEECCCC-CEEEEECCCCEEEEECCCC-cE---EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 44578899998864 5778888899999999762 21 2221110 001112233553 45555555533 7899
Q ss_pred EEEECCCCceeEEec-CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEE
Q 009274 365 KAWSLLDGTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (538)
Q Consensus 365 ~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (538)
++|| .+++.+..+. .+...+.+++++ ++++++...++.|.+||. +++.+..+...........++++++++++++
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 9999 5677776664 344678999998 446666667889999996 4566666543212222344799999998888
Q ss_pred EeCCCcEEEEeCC-cceeeeccc--cceEEEEEe--CCCEEEEEeCCC-eEEEEecCCCeeEeeeecCCcccCCCceEEE
Q 009274 442 SHESGSIKVWRND-KFMKSMQTH--KGSVFAVFL--EGKWLFTGGWDK-TVSVQELAGDEFEEDVIPTGAIPCGSVITAL 515 (538)
Q Consensus 442 ~~~dg~i~iwd~~-~~~~~~~~h--~~~v~~~~~--~~~~l~sgs~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (538)
...++.|++||.. +.+..+..+ .....++++ +|+++++...++ .|++||..+.......... . ...+....
T Consensus 181 ~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~-~--~~~~~~i~ 257 (286)
T 1q7f_A 181 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV-K--HAQCFDVA 257 (286)
T ss_dssp EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESS-C--CSCEEEEE
T ss_pred ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccC-C--CCcceeEE
Confidence 7789999999954 344445433 345666766 788888887776 9999997654433222211 1 11233444
Q ss_pred EEeCCEEEEEECCCeEEEEEcC
Q 009274 516 LYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 516 ~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
+.+++.+++++.|+.|++|++.
T Consensus 258 ~~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 258 LMDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp EETTTEEEEEETTTEEEEEECS
T ss_pred ECCCCcEEEECCCCeEEEEEcc
Confidence 4568888777889999999975
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-16 Score=150.69 Aligned_cols=135 Identities=14% Similarity=0.239 Sum_probs=77.8
Q ss_pred eeeeeec--cccccccccc--hhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 11 KSVAKVG--CVGSRICDKE--VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~--~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
++..|+. |+|+.+.... .....++++||+.|||||++ .| ...++.++|||||||+||||++|
T Consensus 194 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~------~~--------~~~~~~~~DiWSlG~il~ell~G 259 (398)
T 4b99_A 194 NCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELM------LS--------LHEYTQAIDLWSVGCIFGEMLAR 259 (398)
T ss_dssp TCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeecceeeecccCccccccccccceeChHhcCHHHh------cC--------CCCCCChhheehhHHHHHHHHHC
Confidence 4567888 8888775432 12235579999999999998 44 23468999999999999999999
Q ss_pred C-ccchhhhhheee-c-cccccCcchhhcchh--hHHHHHHHHHHH-------hhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 87 E-QFTKELIDYIRC-V-STKASDDNIACLGMY--MAWMEKVTYLLE-------NKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 87 ~-pf~~~~~~~~~~-~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
+ ||.+.+...++. + ....... ...+... ..........+. ...+.....+.+++.+||.++|.+|++
T Consensus 260 ~~pF~g~~~~~~l~~I~~~~g~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t 338 (398)
T 4b99_A 260 RQLFPGKNYVHQLQLIMMVLGTPS-PAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARIS 338 (398)
T ss_dssp SCSSCCSSHHHHHHHHHHHHCCCC-GGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCC-hHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcC
Confidence 9 998764432110 0 0000000 0000000 000000000000 000111234678999999999999999
Q ss_pred hhhHHH
Q 009274 155 LTNVWK 160 (538)
Q Consensus 155 ~~~~~~ 160 (538)
+.++.+
T Consensus 339 a~e~L~ 344 (398)
T 4b99_A 339 AAAALR 344 (398)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 887654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-12 Score=125.45 Aligned_cols=237 Identities=13% Similarity=0.114 Sum_probs=161.0
Q ss_pred CcEEEEEEc--CCEEEEEeCC------------------------CcEEEEeCCCCceEEEEe-cCCcCeEEEEEecCCC
Q 009274 253 DCVTGLAVG--GGFLFSSSFD------------------------KSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQ 305 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~ 305 (538)
+.+.+++++ |+++++.+.+ ++|.+||..+++.+..+. ++-.....+++.+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 557777777 6666666655 579999999998877665 3446789999998655
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCcceeeecc-------cCCceeeeEEEEee-cCCEEEEee-CCCcEEEEECCCCceeE
Q 009274 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNE-------EKDWRYSGIHALTT-SGRYLYTGS-GDRTIKAWSLLDGTLSC 376 (538)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~sg~-~dg~i~iwd~~~~~~~~ 376 (538)
++++...++.|++||...... .+..+.. ........-+++++ +++.+++.+ .++.|++|| .+++.+.
T Consensus 104 -l~v~d~~~~~v~~~~~~g~~~--~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 104 -YWVTDVALHQVFKLDPHSKEG--PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp -EEEEETTTTEEEEECTTCSSC--CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred -EEEEECCCCEEEEEeCCCCeE--EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 888888899999999754311 1111110 11111223457888 677777776 689999999 5677777
Q ss_pred EecC----------CCCCeEEEEEe-C-C-EEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC------CCC
Q 009274 377 TMSG----------HKSAVSTLAVC-N-G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA------VQH 437 (538)
Q Consensus 377 ~~~~----------h~~~v~~l~~~-~-~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 437 (538)
.+.. +-.....++++ + + ++++...++.|++||..+++.+..+.....+.....++++| +++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 6632 22347899998 3 4 55556678899999999899888886443333333467888 333
Q ss_pred EEEEEeCCCcEEEEeC--Ccceeee---ccccceEEEEEe--CCCEEEEEeCCCeEEEEecCC
Q 009274 438 TLVVSHESGSIKVWRN--DKFMKSM---QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 438 ~l~~~~~dg~i~iwd~--~~~~~~~---~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~ 493 (538)
..++...+..|++||. ++.+..+ ..+.....++++ +|.++++...++.|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2223334558999994 3455555 355566777766 787888888899999999864
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-16 Score=162.07 Aligned_cols=113 Identities=24% Similarity=0.215 Sum_probs=80.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+.+.+... +++.+|||.|||||++ .| ..|+.++|||||||+||+||+|+ |
T Consensus 294 ~~vKl~DFG~a~~~~~~~~---~~~~~GT~~y~APEv~------~~---------~~y~~~~DiWSlGvilyeml~G~~P 355 (573)
T 3uto_A 294 NELKLIDFGLTAHLDPKQS---VKVTTGTAEFAAPEVA------EG---------KPVGYYTDMWSVGVLSYILLSGLSP 355 (573)
T ss_dssp CCEEECCCSSCEECCTTSE---EEEECSSGGGCCHHHH------TT---------CCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCEEEeeccceeEccCCCc---eeeeEECccccCHHHh------CC---------CCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 457888 88888876643 5678999999999999 54 56889999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.+...+. .+. ... ....... .......+.+++.+||.++|.+||++.++.+
T Consensus 356 f~~~~~~~~~~~i~-~~~-----~~~~~~~------------~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 356 FGGENDDETLRNVK-SCD-----WNMDDSA------------FSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp SCCSSHHHHHHHHH-TTC-----CCCCSGG------------GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCcCHHHHHHHHH-hCC-----CCCCccc------------ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9886554222 110 000 0000000 0111123678999999999999999887755
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-12 Score=123.01 Aligned_cols=288 Identities=14% Similarity=0.081 Sum_probs=185.0
Q ss_pred eeEEeecCCeEEEEEeecC---------CCcE-EEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEec
Q 009274 233 DLVNGLSKGNVKFKDLQGH---------RDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD 302 (538)
Q Consensus 233 ~~~~~~~~~~~~i~~l~~h---------~~~V-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 302 (538)
.+..-..+....+|..... ...+ ..+...++.++.++.++.|..+|.++|+.+................
T Consensus 64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~- 142 (376)
T 3q7m_A 64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS- 142 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-
T ss_pred eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-
Confidence 3433333333456666542 2233 3445558899999999999999999999998877554322222222
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCC
Q 009274 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK 382 (538)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 382 (538)
+ ..++.++.++.+..+|..+++................ .......+..+++++.++.+..+|..+++.++......
T Consensus 143 -~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~--~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 143 -D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG--ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp -T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC--CCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred -C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC--CCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 2 3667788899999999987764433322111000000 00111225678889999999999999999988775321
Q ss_pred CC----------e-EEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEE
Q 009274 383 SA----------V-STLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (538)
Q Consensus 383 ~~----------v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 451 (538)
.. + ......++.++.++.++.+..+|.++++.+...... . .. ....++..+++++.++.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~-~~---~~~~~~~~l~~~~~~g~l~~~ 292 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--S-VN---DFIVDGNRIYLVDQNDRVMAL 292 (376)
T ss_dssp -----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--C-EE---EEEEETTEEEEEETTCCEEEE
T ss_pred CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--C-CC---CceEECCEEEEEcCCCeEEEE
Confidence 10 1 122334788999999999999999999988776532 1 22 122346788888899999999
Q ss_pred eCCc--ceeeec-cccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECC
Q 009274 452 RNDK--FMKSMQ-THKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCAD 528 (538)
Q Consensus 452 d~~~--~~~~~~-~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 528 (538)
|..+ ...... ............+..|+.++.+|.++++|..+++.......... .........++.|++++.+
T Consensus 293 d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~----~~~~~~~~~~~~l~v~~~~ 368 (376)
T 3q7m_A 293 TIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS----GFQTEPVAADGKLLIQAKD 368 (376)
T ss_dssp ETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTT----CBCSCCEEETTEEEEEBTT
T ss_pred ECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC----cceeCCEEECCEEEEEeCC
Confidence 9543 333333 11222223334677899999999999999999987765543211 1122223358899999999
Q ss_pred CeEEEEE
Q 009274 529 RTVKVYY 535 (538)
Q Consensus 529 g~v~vw~ 535 (538)
|.|..|+
T Consensus 369 G~l~~~~ 375 (376)
T 3q7m_A 369 GTVYSIT 375 (376)
T ss_dssp SCEEEEE
T ss_pred CEEEEEe
Confidence 9999987
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-16 Score=157.23 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=74.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+.... ..+++|||.|||||++ .+ ...|+.++|+|||||+|||||+|+
T Consensus 328 ~G~vKL~DFGlA~~~~~~~----~~t~~GTp~YmAPEvl------~~--------~~~y~~~vDiWSLGvilYEmLtG~~ 389 (689)
T 3v5w_A 328 HGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVL------QK--------GVAYDSSADWFSLGCMLFKLLRGHS 389 (689)
T ss_dssp TSCEEECCCTTCEECSSCC----CCSCCSCGGGCCHHHH------ST--------TCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEecccceeeecCCCC----CCCccCCcCccCHHHH------hC--------CCCCCcHHHHHHHHHHHHHHHhCCC
Confidence 4568999 8888877553 4578999999999999 32 135889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.+....... .. ........ ...+ .....+.+++.+||.++|.+|+..
T Consensus 390 PF~~~~~~~~~--------------~i----~~~i~~~~-~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~ 439 (689)
T 3v5w_A 390 PFRQHKTKDKH--------------EI----DRMTLTMA-VELPDSFSPELRSLLEGLLQRDVNRRLGC 439 (689)
T ss_dssp TTCGGGCCCHH--------------HH----HHHHHHCC-CCCCTTSCHHHHHHHHHHTCSCGGGCTTC
T ss_pred CCCCCChHHHH--------------HH----HHhhcCCC-CCCCccCCHHHHHHHHHHccCCHhHCCCC
Confidence 99875433100 00 00000000 0011 112347889999999999999984
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-15 Score=145.57 Aligned_cols=46 Identities=33% Similarity=0.435 Sum_probs=37.8
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccch
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~ 91 (538)
+++.+|||.|||||++ .| ...++.++|||||||+||||+||+ ||.+
T Consensus 203 ~~~~~GT~~Y~APE~l------~~--------~~~y~~~~DiWSlG~il~ell~G~~Pf~~ 249 (361)
T 4f9c_A 203 VAPRAGTPGFRAPEVL------TK--------CPNQTTAIDMWSAGVIFLSLLSGRYPFYK 249 (361)
T ss_dssp ---CCCCGGGCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred ccccccCccccCHHHH------cC--------CCCCCCccchhhhHHHHHHHHHCCCCCCC
Confidence 3467999999999999 44 234789999999999999999999 9954
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-12 Score=136.27 Aligned_cols=265 Identities=12% Similarity=0.064 Sum_probs=161.6
Q ss_pred eeeeccCcceeEEeecCCeEEEEEe---------ecCCCc-----EEEEEEc--CCEEEEEeCC---------CcEEEEe
Q 009274 224 QARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDC-----VTGLAVG--GGFLFSSSFD---------KSIHVWS 278 (538)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~l---------~~h~~~-----V~~l~~~--~~~l~s~s~d---------g~i~iwd 278 (538)
.+..++++..++++ ++.+.+|++ .+|... ...++|+ |++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 45555666555554 667777763 444432 2346778 8999998876 5667999
Q ss_pred CCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCc---------------eee
Q 009274 279 LKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW---------------RYS 343 (538)
Q Consensus 279 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~~ 343 (538)
+.+++.. .+..|...+...+|||++..++.+ .|+.|++||+.++....... ...... ...
T Consensus 99 ~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 99 LNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp TTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSS
T ss_pred CCCCcEE-EcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCCC
Confidence 9998754 466778889999999988876444 46899999988654322111 111110 011
Q ss_pred eEEEEeecCCEEEEeeCCC------------------------------------cEEEEECCC---Cc--eeEEec---
Q 009274 344 GIHALTTSGRYLYTGSGDR------------------------------------TIKAWSLLD---GT--LSCTMS--- 379 (538)
Q Consensus 344 ~~~~~~~~~~~l~sg~~dg------------------------------------~i~iwd~~~---~~--~~~~~~--- 379 (538)
....++|||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 2358999999888875332 588899988 73 222333
Q ss_pred ---CCCCCeEEEEEe-CC-EEEEEec----CCcEEEEECCCCc----e---eEEEecCCCCceE----EEEEEcCCCCEE
Q 009274 380 ---GHKSAVSTLAVC-NG-VLYSGSR----DGTIRLWSLSDHS----L---LTVLEEDSSGAVS----SVLSLTAVQHTL 439 (538)
Q Consensus 380 ---~h~~~v~~l~~~-~~-~l~s~s~----dg~i~iwd~~~~~----~---~~~~~~~~~~~~~----~~~~~~~~~~~l 439 (538)
+|...+..++|+ ++ .++.... +..|.+||+.+++ + ...+...+...+. ....|+|||+.+
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 377889999999 44 3444332 3369999999887 2 1111111222111 125799999987
Q ss_pred E-EEe-CCC--cEEEEeCC-cceeeeccccceEEEE-EeCCCEEEEEeCC-----CeEEEE--ecCCCe
Q 009274 440 V-VSH-ESG--SIKVWRND-KFMKSMQTHKGSVFAV-FLEGKWLFTGGWD-----KTVSVQ--ELAGDE 495 (538)
Q Consensus 440 ~-~~~-~dg--~i~iwd~~-~~~~~~~~h~~~v~~~-~~~~~~l~sgs~d-----g~v~iw--d~~~~~ 495 (538)
+ ..+ .+| .|++||.. .....+......+..+ .++++.|+..+.. +...|| ++.++.
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~ 402 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT 402 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred EEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence 7 555 344 56777744 3334444444455544 3677766655543 344555 444443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=125.94 Aligned_cols=255 Identities=8% Similarity=0.046 Sum_probs=165.3
Q ss_pred CCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc---------CCCcEEEEEccCCCCCcceeeecccC-C
Q 009274 270 FDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEK-D 339 (538)
Q Consensus 270 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 339 (538)
.|+.|.+||..+++.+..+..+..+ .++|+|++..++++.. .++.|.+||..+.+....+....... .
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999999888877665 8999997765555442 36789999988665444443221110 0
Q ss_pred ceeeeEEEEeecCCEEEEeeC--CCcEEEEECCCCceeEE-ecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCC-C
Q 009274 340 WRYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSD-H 412 (538)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~-~ 412 (538)
.......+++++|++|+++.. +++|.+||+.+++.+.. +.. .+ ...+.+. +..+++.+.||.+.+|+... +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 011224589999999988864 58999999999988887 653 22 2223344 24788899999999999865 5
Q ss_pred ceeEEEec-----CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc----eeeecc------------ccceEEEEE
Q 009274 413 SLLTVLEE-----DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----MKSMQT------------HKGSVFAVF 471 (538)
Q Consensus 413 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~------------h~~~v~~~~ 471 (538)
+....... ....... +..++++..++..+.++.+.++|.... ...+.. .......++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPIF--IAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SEEEEEECCCCSCTTTSCBC--SCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred cEeeeccccceEcCCCCceE--EEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 54422210 0011111 234567777777888999999996421 111110 001124566
Q ss_pred eCCCEEEEEeC-----------CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEcC
Q 009274 472 LEGKWLFTGGW-----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYYG 537 (538)
Q Consensus 472 ~~~~~l~sgs~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~~ 537 (538)
++++.++++.. ++.|.+||+.+.+........ . +....+.++++ |++++. +.|.+||..
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-----~-p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-----D-ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-----T-CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-----C-eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 78777776543 358999999999876655432 2 44555666665 666665 999999975
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-10 Score=105.55 Aligned_cols=282 Identities=10% Similarity=0.026 Sum_probs=178.1
Q ss_pred CeEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE-ecCCcCeEEEEEecCCCCEEEEEcCCCcE
Q 009274 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (538)
Q Consensus 241 ~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 317 (538)
+.+..+.+..+...+.+++++ |+.+++...++.|.+||.. ++..... ..+...+.++++.+++ .++++...++.|
T Consensus 3 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i 80 (299)
T 2z2n_A 3 FKLQELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKI 80 (299)
T ss_dssp EEEEEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEE
T ss_pred ceEEEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeE
Confidence 344556677777889999998 6666665557899999988 5543322 2345778999998754 566777778889
Q ss_pred EEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CC-E
Q 009274 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NG-V 394 (538)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~-~ 394 (538)
..||... . ...+............++.++++..++...++.|..||. +++.... ...+...+.+++++ ++ +
T Consensus 81 ~~~~~~g-~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 81 GRITKKG-I----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp EEECTTS-C----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred EEECCCC-c----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE
Confidence 9998751 1 122211111112223466677877777777889999998 5554332 23345678899998 44 5
Q ss_pred EEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeee--ccccceEEEEEe
Q 009274 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL 472 (538)
Q Consensus 395 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~h~~~v~~~~~ 472 (538)
+++...++.|..||. +++........ .......+++++++++.++...++.|..||.......+ ..+...+.++.+
T Consensus 155 ~v~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-SGDITEFKIPT-PASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEE
T ss_pred EEEeCCCCEEEEEcC-CCcEEEeeCCC-CCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEE
Confidence 555556789999999 66654321211 12223347889999977776678899999974333332 224456777776
Q ss_pred --CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 --~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
+|+.+++...++.|..||.. +......... .......+..+++.++.++..+.|..++..
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~----~~~~~~~i~~~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQI----KSAEPHGICFDGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEETT-TEEEEEECSS----SSCCEEEEEECSSCEEEEETTTEEEEEEEC
T ss_pred CCCCCEEEeccCCceEEEECCC-CceEEEeCCC----CCCccceEEecCCCEEEEecCCcEEEEEcC
Confidence 67766665578899999984 4433221111 112233333377888887766777777654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=140.81 Aligned_cols=234 Identities=7% Similarity=-0.006 Sum_probs=149.1
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcC-----eEEEEEecCCCCEEEEEcCC---------CcEE
Q 009274 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK-----VMAVVYVDEDQPLCISGDSG---------GGIF 318 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~d---------g~i~ 318 (538)
..+++|+ +++++++ |++|++||+.+++....+.+|... ...+.|+|++.. ++.++.+ +.+.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~-l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF-ILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSE-EEEEEEEEECSSSCEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCE-EEEEECCeeeEEEccceEEE
Confidence 4578898 6667665 999999999999988888877643 234788997664 4555554 6678
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCe------------
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAV------------ 385 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v------------ 385 (538)
+||+.+++.... ..+.. .....+++|||+.|+.+. |+.|++||+.+++..+. ..++...+
T Consensus 96 ~~d~~~~~~~~l----~~~~~--~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 96 IYDLNKRQLITE----ERIPN--NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEETTTTEECCS----SCCCT--TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEECCCCcEEEc----ccCCC--cceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 999987653321 11111 123458999999998884 68999999988775442 22333222
Q ss_pred -----EEEEEe--CCEEEEEecCC------------------------------------cEEEEECCC---Cc--eeEE
Q 009274 386 -----STLAVC--NGVLYSGSRDG------------------------------------TIRLWSLSD---HS--LLTV 417 (538)
Q Consensus 386 -----~~l~~~--~~~l~s~s~dg------------------------------------~i~iwd~~~---~~--~~~~ 417 (538)
..+.|+ ++.|+.++.|. +|++||+.+ ++ ....
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 348899 44777765332 488899988 73 2223
Q ss_pred EecC----CCCceEEEEEEcCCCCEEEEEeC----CCcEEEEeCC--c----c--eeee--ccccceEE-----E--EEe
Q 009274 418 LEED----SSGAVSSVLSLTAVQHTLVVSHE----SGSIKVWRND--K----F--MKSM--QTHKGSVF-----A--VFL 472 (538)
Q Consensus 418 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~--~----~--~~~~--~~h~~~v~-----~--~~~ 472 (538)
+... ........++|+|||+.++.... +..|.+||.. + + ...+ ..|...+. . .++
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 3221 02223444689999997665533 3368999843 3 1 1222 34554433 3 345
Q ss_pred CCCEEE-EEeC-C--CeEEEEecCCCeeEe
Q 009274 473 EGKWLF-TGGW-D--KTVSVQELAGDEFEE 498 (538)
Q Consensus 473 ~~~~l~-sgs~-d--g~v~iwd~~~~~~~~ 498 (538)
||+.|+ ..+. + ..|++||+.+++...
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 998877 6654 3 358888988776543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-11 Score=120.34 Aligned_cols=254 Identities=8% Similarity=0.037 Sum_probs=155.5
Q ss_pred EEEEEEcCCEEEEE---------eCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC--Cc--EEEEE
Q 009274 255 VTGLAVGGGFLFSS---------SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GG--IFVWS 321 (538)
Q Consensus 255 V~~l~~~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~--i~vwd 321 (538)
+...+++|++++.. +.++.|.+||+.+++... + ..+..++|+|++..++++...+ +. |.+||
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 44444465555543 236789999998877543 3 5688999999877665554432 33 77777
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC---------------------------CcEEEEECCCCce
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD---------------------------RTIKAWSLLDGTL 374 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---------------------------g~i~iwd~~~~~~ 374 (538)
+.++.... +.. .. . .....++|+++.|+.++.+ ..|++||+.+++.
T Consensus 92 ~~~g~~~~-l~~---~~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 92 LETLSSKK-ILE---AK--N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp TTTTEEEE-EEE---ES--E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred CCCCceEE-EEc---CC--C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 76543211 111 11 1 3345789999988877632 5799999998877
Q ss_pred eEEecCCCCCeEEEEEe-CCEEEEEecCC-------cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC-
Q 009274 375 SCTMSGHKSAVSTLAVC-NGVLYSGSRDG-------TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES- 445 (538)
Q Consensus 375 ~~~~~~h~~~v~~l~~~-~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d- 445 (538)
+..+.. . .+..++|+ +++++++..+. ...+|.+.+++. ..+..+ ... ..++|+|+.|+.++.+
T Consensus 165 ~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~--~~~---~~~spdg~~l~~~~~~~ 236 (347)
T 2gop_A 165 IEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK--VSF---YAVDSDGERILLYGKPE 236 (347)
T ss_dssp EEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE--ESE---EEEEECSSCEEEEECCS
T ss_pred EeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC--cce---eeECCCCCEEEEEEccc
Confidence 455544 3 78899999 44666665542 334444444443 333332 222 2349999988877754
Q ss_pred -------CcEEEEeCCcceeeeccccceEEE-EEe-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEE
Q 009274 446 -------GSIKVWRNDKFMKSMQTHKGSVFA-VFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL 516 (538)
Q Consensus 446 -------g~i~iwd~~~~~~~~~~h~~~v~~-~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (538)
..|.+||.++.......|...+.. +.| ++ ++++++.++.+++| +.+++....... ...+..+.
T Consensus 237 ~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~~~~~~~------~~~v~~~~ 308 (347)
T 2gop_A 237 KKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEIKPIAKG------RHWIMGFD 308 (347)
T ss_dssp SSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSEEEEECS------SSEEEEEE
T ss_pred cCCccccceEEEECCCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCceEEEecC------CCeEEeee
Confidence 368888833333334456677775 666 56 88899999999999 875544322221 22344444
Q ss_pred EeCCEEEEEECCCeE-EEEEc
Q 009274 517 YWQGKLFVGCADRTV-KVYYY 536 (538)
Q Consensus 517 ~~~~~l~sg~~dg~v-~vw~~ 536 (538)
+.+..+++++.++.. .+|.+
T Consensus 309 ~s~~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 309 VDEIVVYLKETATRLRELFTW 329 (347)
T ss_dssp ESSSEEEEEECSSSCCEEEEE
T ss_pred eeCcEEEEEcCCCChHHheEe
Confidence 444556677777655 77764
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=141.58 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=86.8
Q ss_pred eeeeeec--cccccccccchhhh-----hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhh
Q 009274 11 KSVAKVG--CVGSRICDKEVGLF-----LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSL 83 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~-----~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~l 83 (538)
+..+|+. |+|+.+........ ....+||+.|||||++ .+ ..+++++|||||||+||+|
T Consensus 190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el 254 (364)
T 3op5_A 190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH------NG---------VAPSRRGDLEILGYCMIQW 254 (364)
T ss_dssp TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh------CC---------CCCCchhhHHHHHHHHHHH
Confidence 3567888 67776654432111 1346699999999999 44 5678999999999999999
Q ss_pred hhcC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh--cCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 84 LIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF--GSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 84 ltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
+||+ ||.+....... ............+....... ......+.+++.+|++.+|.+||+..++.+
T Consensus 255 ~~g~~Pf~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~ 322 (364)
T 3op5_A 255 LTGHLPWEDNLKDPKY------------VRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRD 322 (364)
T ss_dssp HHSCCTTGGGTTCHHH------------HHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred HhCCCCccccccCHHH------------HHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 9999 99874322100 00111111122222222211 223345889999999999999999999998
Q ss_pred HHHHhhc
Q 009274 161 CIRELII 167 (538)
Q Consensus 161 ~l~~l~~ 167 (538)
.+..++.
T Consensus 323 ~l~~~~~ 329 (364)
T 3op5_A 323 ILLQGLK 329 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887763
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-11 Score=119.70 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=175.7
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCC---------cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD---------HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 258 l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
....++.++.++.++.|..+|.++++.+..+.... ..+.+.... .+..++.++.++.|..+|..+++..
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEE
Confidence 34458888999999999999999999998876532 223222222 2335677888999999999877644
Q ss_pred cceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-----EEEEEeCCEEEEEecCCc
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-----STLAVCNGVLYSGSRDGT 403 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~l~s~s~dg~ 403 (538)
......... .... ...+..+++++.++.|..+|..+++.++......... ......++.++.++.++.
T Consensus 127 W~~~~~~~~---~~~p----~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~ 199 (376)
T 3q7m_A 127 WQTKVAGEA---LSRP----VVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGR 199 (376)
T ss_dssp EEEECSSCC---CSCC----EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTE
T ss_pred EEEeCCCce---EcCC----EEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCE
Confidence 332221110 1111 1235678888999999999999999988876433221 233444788899999999
Q ss_pred EEEEECCCCceeEEEecCCCCceE---EE--EEEc--CCCCEEEEEeCCCcEEEEeCCcceeeeccccceEEEEEeCCCE
Q 009274 404 IRLWSLSDHSLLTVLEEDSSGAVS---SV--LSLT--AVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKW 476 (538)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~---~~--~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~~~~~~~~ 476 (538)
+..+|..+++.+............ .. .... ..+..+++++.++.+..+|..+-...+.........+..++..
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 279 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNR 279 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTE
T ss_pred EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEECCE
Confidence 999999999988777643211000 00 0001 1256788888899999999654322232223344555567888
Q ss_pred EEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 477 LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 477 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++.++.++.+..+|..+++.......... .........++.+++++.+|.|..+|..
T Consensus 280 l~~~~~~g~l~~~d~~tG~~~w~~~~~~~----~~~~~~~~~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDGGVTLWTQSDLLH----RLLTSPVLYNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECTTTT----SCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred EEEEcCCCeEEEEECCCCcEEEeecccCC----CcccCCEEECCEEEEEeCCCeEEEEECC
Confidence 99999999999999999987765542211 1122223357899999999999999864
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-14 Score=140.24 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=82.1
Q ss_pred eeeec--cccccccccchhh-----hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 13 VAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
..|+. |+++.+....... ......||+.|||||++ .+ ..++.++|||||||+||+|+|
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~ 255 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAH------KG---------VALSRRSDVEILGYCMLRWLC 255 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHH------HT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHh------cC---------CCCCchhhHHHHHHHHHHHHh
Confidence 67888 6676664432110 12467999999999999 44 467899999999999999999
Q ss_pred cC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc--CccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG--SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
|+ ||......... ............+.......+ .....+.+++.+||..+|.+||++.++.+.+
T Consensus 256 g~~pf~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L 323 (345)
T 2v62_A 256 GKLPWEQNLKDPVA------------VQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKIL 323 (345)
T ss_dssp SSCTTGGGTTCHHH------------HHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred CCCCccccccccHH------------HHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence 99 99763222000 001111111111111111111 2334588999999999999999999998877
Q ss_pred HHh
Q 009274 163 REL 165 (538)
Q Consensus 163 ~~l 165 (538)
..+
T Consensus 324 ~~~ 326 (345)
T 2v62_A 324 NPH 326 (345)
T ss_dssp CTT
T ss_pred hcc
Confidence 664
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-15 Score=146.82 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=79.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
.+..|+. |+|+.+...... ..+.+||+.|||||++ .+ ..+++++|||||||+||+|++|.
T Consensus 149 ~~~vkL~DFG~a~~~~~~~~~--~~~~~gt~~Y~APE~l------~~---------~~~~~~~DIwSlGvilyell~G~~ 211 (444)
T 3soa_A 149 GAAVKLADFGLAIEVEGEQQA--WFGFAGTPGYLSPEVL------RK---------DPYGKPVDLWACGVILYILLVGYP 211 (444)
T ss_dssp TCCEEECCCSSCBCCCTTCCB--CCCSCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEccCceeEEecCCCce--eecccCCcccCCHHHh------cC---------CCCCCccccHHHHHHHHHHHhCCC
Confidence 3567888 667666654332 4578999999999999 44 56889999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+. .+. ......+..........+.+++.+||..+|.+||++.++.+
T Consensus 212 Pf~~~~~~~~~~~i~------------------~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 212 PFWDEDQHRLYQQIK------------------AGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp SCCCSSHHHHHHHHH------------------HTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCccHHHHHHHHH------------------hCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 99875444211 000 00000000111122234788999999999999999987765
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-14 Score=138.72 Aligned_cols=125 Identities=12% Similarity=0.065 Sum_probs=84.1
Q ss_pred eeeec--cccccccccchhh-----hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 13 VAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
++|+. |+++...+..... .....+||+.|||||++ .+ ..++.++|||||||+||+|++
T Consensus 148 ~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~ 212 (330)
T 2izr_A 148 VIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTH------LG---------KEQSRRDDLEALGHMFMYFLR 212 (330)
T ss_dssp SEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHH------cC---------CCCCchhHHHHHHHHHHHHhc
Confidence 37888 6666654432210 02468999999999999 44 567899999999999999999
Q ss_pred cC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
|+ ||.+..... ...............+........+.+.+++.+||+.+|.+||+..++.+.+..
T Consensus 213 g~~Pf~~~~~~~--------------~~~~~~~i~~~~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~ 278 (330)
T 2izr_A 213 GSLPWQGLKADT--------------LKERYQKIGDTKRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTD 278 (330)
T ss_dssp SSCTTTTCCCSS--------------HHHHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHH
T ss_pred CCCCcccccccc--------------HHHHHHHHHhhhccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 99 998753221 111111111111111112222233478899999999999999999999888877
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
+.
T Consensus 279 ~~ 280 (330)
T 2izr_A 279 LF 280 (330)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=121.04 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=157.9
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCceEEEEecC------CcCeEEEEEecCCCC
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGH------DHKVMAVVYVDEDQP 306 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~ 306 (538)
+..+..+..+ .++++ ++++++++ .+++|.+||..+++.+.++... ......++++|++..
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF 121 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence 4556666655 88998 88888886 3678999999999998888643 234667899997775
Q ss_pred EEEEEcC-CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCC-CceeE------E
Q 009274 307 LCISGDS-GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLD-GTLSC------T 377 (538)
Q Consensus 307 ~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~-~~~~~------~ 377 (538)
++++... ++.|.+||+.+.+....+ ..... . . ...+.|++ ..+++.+.||.+.+|+... ++... .
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~--i~~~~--~-~-~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDV--TAAAG--C-W-SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEE--GGGTT--E-E-EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEE--ecCCC--c-c-eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 5555443 789999999876332210 11111 0 0 12355655 5788888999999999865 55441 1
Q ss_pred ecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCcee--EEEecCC-----CCceEE---EEEEcCCCCEEEEEeC-
Q 009274 378 MSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL--TVLEEDS-----SGAVSS---VLSLTAVQHTLVVSHE- 444 (538)
Q Consensus 378 ~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~-----~~~~~~---~~~~~~~~~~l~~~~~- 444 (538)
+..+..++ .+.+. +..++..+.++.+.++|+...... ..+.... ...... .++++++++.++++..
T Consensus 196 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 196 FSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp SCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred EcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 22222222 11112 446666778899999999765422 2221100 000000 1578999888877653
Q ss_pred ----------CCcEEEEeC--CcceeeeccccceEEEE--EeCCCEEEEEeCCCeEEEEecCCC--eeEeee
Q 009274 445 ----------SGSIKVWRN--DKFMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQELAGD--EFEEDV 500 (538)
Q Consensus 445 ----------dg~i~iwd~--~~~~~~~~~h~~~v~~~--~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~ 500 (538)
++.|.+||. .+.+..+..+. ..++ +++|++|++++. +.|.+||..++ +.....
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 347999995 45667777666 5555 459999998887 99999999999 765554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-11 Score=114.15 Aligned_cols=239 Identities=13% Similarity=0.052 Sum_probs=160.6
Q ss_pred EEeecCCCcEEEEEEc--CC-EEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 246 KDLQGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
..+..+.....+++|+ ++ +++++..++.|..||..++ ...+..+...+.++++.+++ .++++...++.|.+||.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECS
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcC
Confidence 3355566778899998 66 7888888999999999877 66777788889999998855 47677777789999998
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEE----ee-------------CCCcEEEEECCCCceeEEecCCCCCe
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT----GS-------------GDRTIKAWSLLDGTLSCTMSGHKSAV 385 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----g~-------------~dg~i~iwd~~~~~~~~~~~~h~~~v 385 (538)
.++............ ........+++++|+++++ |+ ..+.|..+|.. ++ ...+..+....
T Consensus 98 ~~g~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~ 174 (296)
T 3e5z_A 98 PGGEWESIADSFEGK-KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKP 174 (296)
T ss_dssp TTCCEEEEECEETTE-ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSE
T ss_pred CCCcEEEEeeccCCC-CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCC
Confidence 665432211111110 0011123577889988877 33 13466666655 44 34445566778
Q ss_pred EEEEEe--CCEEEEEecCCcEEEEECC-CCce---eEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-ccee
Q 009274 386 STLAVC--NGVLYSGSRDGTIRLWSLS-DHSL---LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMK 458 (538)
Q Consensus 386 ~~l~~~--~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~ 458 (538)
..++|+ ++.+++.+.++.|.+||+. +++. ...+ ........ .++++++|++.++. ++.|.+||.. +.+.
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~-~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~ 250 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTD-GLRVDAGGLIWASA--GDGVHVLTPDGDELG 250 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCC-SEEEBTTSCEEEEE--TTEEEEECTTSCEEE
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCC-eEEECCCCCEEEEc--CCeEEEECCCCCEEE
Confidence 999998 4466777778999999997 5554 2333 22222222 26899999866665 7899999954 4556
Q ss_pred eeccccceEEEEEe---CCCEEEEEeCCCeEEEEecCCCee
Q 009274 459 SMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEF 496 (538)
Q Consensus 459 ~~~~h~~~v~~~~~---~~~~l~sgs~dg~v~iwd~~~~~~ 496 (538)
.+..+.. +.++.+ +++.|++++.+ .+.-++..+.++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 6666666 777766 66788888876 455566666654
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=138.90 Aligned_cols=136 Identities=14% Similarity=0.110 Sum_probs=83.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+. |+|+.+............+||+.|||||++ .+. ......++.++|||||||+||+|+||+ |
T Consensus 168 ~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~----~~~~~~~~~~~DiwslG~il~el~tg~~p 237 (322)
T 3soc_A 168 LTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVL------EGA----INFQRDAFLRIDMYAMGLVLWELASRCTA 237 (322)
T ss_dssp CCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHH------TTC----CCCCHHHHHHHHHHHHHHHHHHHHTTBTT
T ss_pred CeEEEccCCcccccccccCccccccCccCccccCHhhc------ccc----cccCcCCCccchhHHHHHHHHHHHhCCCC
Confidence 468888 667666554433234458999999999999 330 001245667899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh-hhcCc----------cchHHHHHhhhhccCCCCCcchhh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSE----------FVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
|.+........... .....+.... ....... ..... ...+.+++.+||+.+|.+||++.+
T Consensus 238 f~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e 308 (322)
T 3soc_A 238 ADGPVDEYMLPFEE--------EIGQHPSLED-MQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGC 308 (322)
T ss_dssp SSSCCCCCCCTTHH--------HHCSSCCHHH-HHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred CCCCcchhccchhh--------hhccCCchhh-hhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHH
Confidence 98753331110000 0000000000 1111100 00000 112788999999999999999999
Q ss_pred HHHHHHHhh
Q 009274 158 VWKCIRELI 166 (538)
Q Consensus 158 ~~~~l~~l~ 166 (538)
+.+.+.++.
T Consensus 309 ll~~L~~l~ 317 (322)
T 3soc_A 309 VGERITQMQ 317 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-14 Score=134.83 Aligned_cols=128 Identities=10% Similarity=0.044 Sum_probs=84.5
Q ss_pred eeeeeec--cccccccccchhh-----hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhh
Q 009274 11 KSVAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSL 83 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~l 83 (538)
+...|+. |+++......... ......||+.|||||++ .+ ..+++++|||||||+||+|
T Consensus 144 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l 208 (296)
T 3uzp_A 144 GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH------LG---------IEQSRRDDLESLGYVLMYF 208 (296)
T ss_dssp TTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeCCCcccccccccccccccccccccccccccCChhhh------cC---------CCCCcchhhHHHHHHHHHH
Confidence 3457888 5566655443210 12467999999999999 44 5678999999999999999
Q ss_pred hhcC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 84 LIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 84 ltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
++|+ ||....... ...............+.... ......+.+++.+||+.+|.+||++.++.+.
T Consensus 209 ~~g~~pf~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~ 274 (296)
T 3uzp_A 209 NLGSLPWQGLKAAT--------------KRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQL 274 (296)
T ss_dssp HHSSCTTSSCCCSS--------------SSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHH
T ss_pred HhCCCCCCCcCchh--------------hhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHH
Confidence 9999 998643220 00011111111111111111 1223358899999999999999999999998
Q ss_pred HHHhhc
Q 009274 162 IRELII 167 (538)
Q Consensus 162 l~~l~~ 167 (538)
+.++..
T Consensus 275 l~~~~~ 280 (296)
T 3uzp_A 275 FRNLFH 280 (296)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-14 Score=135.24 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=82.4
Q ss_pred eeeec--cccccccccchh-----hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 13 VAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
.+|+. |+++........ .......||+.|||||++ .+ ..+++++|||||||+||+|++
T Consensus 149 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~ 213 (298)
T 1csn_A 149 MIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH------LG---------REQSRRDDLEALGHVFMYFLR 213 (298)
T ss_dssp CEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECccccccccccccccccccCccCCCCCcccCCchhh------cC---------CCCChHHHHHHHHHHHHHHHc
Confidence 47888 566655543221 013467899999999998 44 567899999999999999999
Q ss_pred cC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
|+ ||....... ...............+.... ......+.+++.+||+.+|.+||+..++.+.+.
T Consensus 214 g~~pf~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~ 279 (298)
T 1csn_A 214 GSLPWQGLKAAT--------------NKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFS 279 (298)
T ss_dssp SSCTTSSCCSCC--------------HHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred CCCCcchhhccc--------------cHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHH
Confidence 99 998742220 00000011111111111111 122335889999999999999999999998888
Q ss_pred Hhh
Q 009274 164 ELI 166 (538)
Q Consensus 164 ~l~ 166 (538)
++.
T Consensus 280 ~~~ 282 (298)
T 1csn_A 280 KVL 282 (298)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-14 Score=134.56 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=84.3
Q ss_pred eeeeeec--cccccccccchh-----hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhh
Q 009274 11 KSVAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSL 83 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~l 83 (538)
+...|+. |+++........ .......||+.|||||++ .+ ..+++++|||||||+||+|
T Consensus 144 ~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l 208 (296)
T 4hgt_A 144 GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH------LG---------IEQSRRDDLESLGYVLMYF 208 (296)
T ss_dssp TTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHH------TT---------CCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHh------cC---------CCCCchhHHHHHHHHHHHH
Confidence 3557888 566665544221 012367999999999999 44 5678899999999999999
Q ss_pred hhcC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 84 LIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 84 ltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
++|+ ||......... .............+.... ......+.+++.+||+.+|.+||++.++.+.
T Consensus 209 ~~g~~pf~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~ 274 (296)
T 4hgt_A 209 NLGSLPWQGLKAATKR--------------QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQL 274 (296)
T ss_dssp HHSSCTTSSCCCSSSS--------------SHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHH
T ss_pred hcCCCCCcccchhhhh--------------hhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 9999 99874333100 111111111111111111 1223358899999999999999999999998
Q ss_pred HHHhh
Q 009274 162 IRELI 166 (538)
Q Consensus 162 l~~l~ 166 (538)
+..+.
T Consensus 275 l~~~~ 279 (296)
T 4hgt_A 275 FRNLF 279 (296)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-11 Score=113.06 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=161.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCC-cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCc
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (538)
++.|++++.|+.|.+||.++|+.+..+..+. ..+.++.++|++. +++ +.++.|..||. +++....+.. ....
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~---~~~~ 77 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAA---PAGC 77 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEEC---CTTC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcC---CCCc
Confidence 6789999999999999999999999999876 5788999998654 656 34678999987 5543333222 1111
Q ss_pred eeeeEEEEeecCCEEEEeeC-CCcEEEEECCCCceeEEecC------CCCCeEEEEEe--CCEEEEEecCCcEEEEECCC
Q 009274 341 RYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSG------HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD 411 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~ 411 (538)
. .....+.++|+++++.+. ++.|..+|. +++.+..+.. +......+++. ++++++...++.|..||..
T Consensus 78 ~-~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 78 E-MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp E-EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred c-ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 1 223467789999998887 788888885 7887776642 11233444555 6688999999999999998
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccceeeecccc------ceEEEEEe--CCCEEEEEe
Q 009274 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHK------GSVFAVFL--EGKWLFTGG 481 (538)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~------~~v~~~~~--~~~~l~sgs 481 (538)
|+.+.++..... ... ....++++.+++++.++.|..+|. ++.+.++..+. ..+.++.. +|+.+++..
T Consensus 155 G~~~w~~~~~~~--~~~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 155 GQLLNSVKLSGT--PFS-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEEEECSSC--CCE-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCC--ccc-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999988876422 222 466789999999988889999994 45666664332 12455544 788887774
Q ss_pred CC--------CeEEEEec-CCCeeEeeeecCCc
Q 009274 482 WD--------KTVSVQEL-AGDEFEEDVIPTGA 505 (538)
Q Consensus 482 ~d--------g~v~iwd~-~~~~~~~~~~~~~~ 505 (538)
.. +..+++++ .++++.+.+.....
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCccc
Confidence 21 23456666 46666666554443
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-14 Score=135.42 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=73.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+. |+++....... ......||+.|||||++ .+ ..+++++|||||||+||+|++|+ |
T Consensus 176 ~~~kL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~P 238 (309)
T 3p86_A 176 YTVKVCDFGLSRLKASTFL--SSKSAAGTPEWMAPEVL------RD---------EPSNEKSDVYSFGVILWELATLQQP 238 (309)
T ss_dssp CCEEECCCC-------------------CCTTSCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHCCCT
T ss_pred CcEEECCCCCCcccccccc--ccccCCCCccccChhhh------cC---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 467888 55655443322 24468999999999999 44 56788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
|.......+. .+..... .... .......+.+++.+||..+|.+||++.++.+.+..+..
T Consensus 239 f~~~~~~~~~~~~~~~~~-----~~~~---------------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~ 298 (309)
T 3p86_A 239 WGNLNPAQVVAAVGFKCK-----RLEI---------------PRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK 298 (309)
T ss_dssp TTTSCHHHHHHHHHHSCC-----CCCC---------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhcCC-----CCCC---------------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 9876444111 0000000 0000 00112247889999999999999999999998888763
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-14 Score=141.63 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=76.7
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
-.|+. |+++.+.+... ....+|||.|||||++ .+ ..++.++|||||||++|+|++|. ||
T Consensus 157 ~vkl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~~ll~g~~Pf 218 (361)
T 2yab_A 157 HIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIV------NY---------EPLGLEADMWSIGVITYILLSGASPF 218 (361)
T ss_dssp CEEECCCSSCEECCTTCC---CCCCCSCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSCCSS
T ss_pred CEEEEecCCceEcCCCCc---cccCCCCccEECchHH------cC---------CCCCccccHHHHHHHHHHHHhCCCCC
Confidence 57888 66776665432 5578999999999999 43 56789999999999999999999 99
Q ss_pred chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.+.+...+. .+. ... ..... +. .......+.+++.+||..+|.+||++.++.+
T Consensus 219 ~~~~~~~~~~~i~-~~~-----~~~~~----~~--------~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 219 LGDTKQETLANIT-AVS-----YDFDE----EF--------FSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp CCSSHHHHHHHHH-TTC-----CCCCH----HH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHHHH-hcC-----CCCCc----hh--------ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 876544222 000 000 00000 00 0112223778999999999999999877654
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-14 Score=137.93 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=74.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+...... .....+||+.|||||++ .+ ..+++++|||||||++|+|+||+ |
T Consensus 148 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~ll~g~~p 211 (294)
T 4eqm_A 148 KTLKIFDFGIAKALSETSLT-QTNHVLGTVQYFSPEQA------KG---------EATDECTDIYSIGIVLYEMLVGEPP 211 (294)
T ss_dssp SCEEECCCSSSTTC--------------CCSSCCHHHH------HT---------CCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEeCCCcccccccccc-ccCccccCccccCHhHh------cC---------CCCCchHhHHHHHHHHHHHHhCCCC
Confidence 457888 566665543221 13457899999999999 44 55778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc-hhhHHHHHHHhhc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL-LTNVWKCIRELII 167 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~-~~~~~~~l~~l~~ 167 (538)
|.+.......... .....+. .+..........+.+++.+||+++|.+||+ ..++.+.+..++.
T Consensus 212 f~~~~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 212 FNGETAVSIAIKH---------IQDSVPN-------VTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp SCSSCHHHHHHHH---------HSSCCCC-------HHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred CCCCChHHHHHHH---------hhccCCC-------cchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 9876443111000 0000000 000111112234888999999999999995 5667776666553
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-14 Score=139.09 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=76.1
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
-.|+. |+++.+..... ....+||+.|||||++ .+ ..+++++|||||||+||+|++|. ||
T Consensus 156 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~ll~g~~pf 217 (326)
T 2y0a_A 156 RIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIV------NY---------EPLGLEADMWSIGVITYILLSGASPF 217 (326)
T ss_dssp CEEECCCTTCEECCTTSC---CCCCCSCTTTCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSCCSS
T ss_pred CEEEEECCCCeECCCCCc---cccccCCcCcCCceee------cC---------CCCCcHHHHHHHHHHHHHHHHCcCCC
Confidence 57888 66666654322 4568999999999998 43 56789999999999999999999 99
Q ss_pred chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.+.....+. .+. ... ...... ........+.+++.+||..+|.+||++.++.+
T Consensus 218 ~~~~~~~~~~~~~---------~~~-~~~~~~--------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 218 LGDTKQETLANVS---------AVN-YEFEDE--------YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp CCSSHHHHHHHHH---------HTC-CCCCHH--------HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHHHHHH---------hcC-CCcCcc--------ccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 875443111 000 000 000000 00112234778999999999999999887765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.3e-12 Score=123.20 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=158.5
Q ss_pred EEEeCCCCceEEEEecCCcCeEE-----EEEecCCCCEEEEEcCCCc--EEEEEccCCCCCcceeeecccCCceeeeEEE
Q 009274 275 HVWSLKDFSHVHTFKGHDHKVMA-----VVYVDEDQPLCISGDSGGG--IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA 347 (538)
Q Consensus 275 ~iwd~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (538)
..+|..++..+..+..|...... .+|+|++..+++++..+|. |.+||+.++....... .+.. ......
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~---~~~~--~~~~~~ 87 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE---GRGD--NTFGGF 87 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC---SSCB--CSSSCE
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee---CCCC--CccceE
Confidence 34577888888888888776666 8899987766666555774 7777877653322211 1111 111237
Q ss_pred EeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEE--e--CCEEEEE----------------------ecC
Q 009274 348 LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV--C--NGVLYSG----------------------SRD 401 (538)
Q Consensus 348 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~----------------------s~d 401 (538)
++|+++.|+.++.++.|++||+.+++....+..+...+....| + +.+++.. ..+
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 9999999999999999999999999887777666666655554 3 3344432 244
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEEEEeCC------CcEEEEeCC-cceeeecccc--ceEEEEE
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHES------GSIKVWRND-KFMKSMQTHK--GSVFAVF 471 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------g~i~iwd~~-~~~~~~~~h~--~~v~~~~ 471 (538)
..|.+||+.+++........ ... ....|+| +|+.|+....+ ..|.++|.. .....+..+. ..+....
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~--~~~-~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN--QWL-GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES--SCE-EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred ceEEEEECCCCceEEeecCC--ccc-cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 78999999998765444332 223 3368999 99988877753 378888853 3344444444 3455555
Q ss_pred e--CCCEEEEEeC-CC----eEEEEecCCCeeEeeeecCCcccC-CCceEEEEEeCCE-EEEE---------ECCCeEEE
Q 009274 472 L--EGKWLFTGGW-DK----TVSVQELAGDEFEEDVIPTGAIPC-GSVITALLYWQGK-LFVG---------CADRTVKV 533 (538)
Q Consensus 472 ~--~~~~l~sgs~-dg----~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~sg---------~~dg~v~v 533 (538)
| ||+.|+..+. ++ .|++||+.+++............. .......+.+|+. |+.. ..+..|++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 5 8887765443 22 399999998875443222210000 0000013455554 4432 45678999
Q ss_pred EEcC
Q 009274 534 YYYG 537 (538)
Q Consensus 534 w~~~ 537 (538)
|++.
T Consensus 325 ~d~~ 328 (388)
T 3pe7_A 325 FNMK 328 (388)
T ss_dssp EETT
T ss_pred Eecc
Confidence 9975
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-11 Score=113.52 Aligned_cols=238 Identities=8% Similarity=0.036 Sum_probs=155.9
Q ss_pred CcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 009274 253 DCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 253 ~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
.....+++. ++.+++...++.|.+||..+++.+.++.. ......+++++++ .++++...++.|.+||..+.+....+
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEE
Confidence 446778888 55555566679999999999999998863 4667899998865 56566558999999999876433332
Q ss_pred eeecccC-CceeeeEEEEeecCCEEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEe-cC-----
Q 009274 332 KKWNEEK-DWRYSGIHALTTSGRYLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGS-RD----- 401 (538)
Q Consensus 332 ~~~~~~~-~~~~~~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s-~d----- 401 (538)
....... ..... -+++ +++.++++. .++.|.++|..+++.+..+.... ....++++ ++.++.++ .+
T Consensus 122 ~~g~~~~~~~~p~-~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 122 ECPDMDMESGSTE-QMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp ECTTCCTTTCBCC-CEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EcCCccccCCCcc-eEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCc
Confidence 2211000 00111 1233 455555555 48899999999999888776433 34678887 44444444 33
Q ss_pred -----CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--cee-e-eccccceEEEEEe
Q 009274 402 -----GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMK-S-MQTHKGSVFAVFL 472 (538)
Q Consensus 402 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~-~-~~~h~~~v~~~~~ 472 (538)
+.|.++|..+++....+......... .++++|+++.++++.. .|.+||... ... . +..+......+++
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~-~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v 274 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPS-EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTV 274 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTTCCCE-EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred cccCCceEEEEECCCCeEEEEEecCCCCCce-eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence 78999999999887777543222233 3799999999988765 899999643 211 1 1211234555554
Q ss_pred ---CCCEEEEE----eCCCeEEEEecCCCeeEeee
Q 009274 473 ---EGKWLFTG----GWDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 473 ---~~~~l~sg----s~dg~v~iwd~~~~~~~~~~ 500 (538)
++.++++. ..++.|.+||.. ++.....
T Consensus 275 dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 275 NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 45555665 578999999998 5544433
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-11 Score=129.03 Aligned_cols=246 Identities=11% Similarity=0.044 Sum_probs=155.9
Q ss_pred eecCCCcEE---------EEEEc----CCE-EEEEeC-CCcEEEEeCC--CCceEEEEec-----CCcCeEEEEEecCCC
Q 009274 248 LQGHRDCVT---------GLAVG----GGF-LFSSSF-DKSIHVWSLK--DFSHVHTFKG-----HDHKVMAVVYVDEDQ 305 (538)
Q Consensus 248 l~~h~~~V~---------~l~~~----~~~-l~s~s~-dg~i~iwd~~--~~~~~~~~~~-----h~~~v~~l~~~~~~~ 305 (538)
+..|...+. ...|+ |++ |+.++. +..|.+|++. .......+.. |...+.+++|+|+++
T Consensus 63 l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~ 142 (662)
T 3azo_A 63 ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG 142 (662)
T ss_dssp SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT
T ss_pred eCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC
Confidence 445655555 55454 777 665543 5667777765 2033455555 677889999999776
Q ss_pred CEEEEEcCC----------CcEEEEEccCCCCC--cceeeec-ccCCceeeeEEEEeecCCEEEEeeCC--------CcE
Q 009274 306 PLCISGDSG----------GGIFVWSFSFPLGH--EPLKKWN-EEKDWRYSGIHALTTSGRYLYTGSGD--------RTI 364 (538)
Q Consensus 306 ~~l~s~~~d----------g~i~vwd~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~d--------g~i 364 (538)
.+ ++++.+ ..|++||+.+.... ....... .+. ......+++|||++|+.++.+ ..|
T Consensus 143 ~l-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 143 EV-WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp EE-EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred EE-EEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 55 555544 58999998862100 0111111 111 122234799999999887755 379
Q ss_pred EEEECC-CC---ceeEEecCCCCCeEEEEEe--CCEEEEEecCC--cEEEEECCCCceeEEEecCCCCce-------EEE
Q 009274 365 KAWSLL-DG---TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG--TIRLWSLSDHSLLTVLEEDSSGAV-------SSV 429 (538)
Q Consensus 365 ~iwd~~-~~---~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~-------~~~ 429 (538)
++||+. ++ +......+|...+..++|+ ++++++++.++ .|.+||+.+++.......+ .... ...
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTCCS
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccCce
Confidence 999998 56 4444445567889999999 44777777888 6667777666654333221 1110 122
Q ss_pred EEEcCCCCEEEEEeCCCcEEEE--eCC-cceeeeccccceEEEE-EeCCCEE--EEEeCCC--eEEEEecCCCeeEe
Q 009274 430 LSLTAVQHTLVVSHESGSIKVW--RND-KFMKSMQTHKGSVFAV-FLEGKWL--FTGGWDK--TVSVQELAGDEFEE 498 (538)
Q Consensus 430 ~~~~~~~~~l~~~~~dg~i~iw--d~~-~~~~~~~~h~~~v~~~-~~~~~~l--~sgs~dg--~v~iwd~~~~~~~~ 498 (538)
+.++++++++++++. +.+++| |.. .....+..|...+..+ +++++.+ ++++.+. .|.+||+.+++...
T Consensus 299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 578899999999998 999999 543 4567777888888888 8866543 3444454 46666776766543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-10 Score=110.87 Aligned_cols=203 Identities=8% Similarity=0.044 Sum_probs=143.2
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc-eEEEE---------ecCCcCeEEEEEecCCCCEEEEEc-CCCc
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-HVHTF---------KGHDHKVMAVVYVDEDQPLCISGD-SGGG 316 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~~-~dg~ 316 (538)
++-.....++++ |+++++...++.|++||.+... .+..+ ..+-.....++++|+++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 455678999998 7888888889999999986442 55555 234457899999986777878886 6999
Q ss_pred EEEEEccCCCCCcceeeeccc-----CCceeeeEEEEeec-CCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEE
Q 009274 317 IFVWSFSFPLGHEPLKKWNEE-----KDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTL 388 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l 388 (538)
|++||.. +.....+...... ........++++++ ++++++...++.|++||..+++.+..+. .+...+.++
T Consensus 168 I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 168 IVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 9999943 2221111111000 01111234578888 6677777788999999998899888873 456678888
Q ss_pred EEeCCEEEEEe--------cCCcEEEEECCCCceeEEEec--CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 009274 389 AVCNGVLYSGS--------RDGTIRLWSLSDHSLLTVLEE--DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 389 ~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 454 (538)
+++++.++... .+..|++||..+++.+..+.. .+..... .++++++|.++++...++.|++|+..
T Consensus 247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~-~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPH-DIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEE-EEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCee-EEEECCCCCEEEEECCCCEEEEEeCC
Confidence 88865444432 345899999999998888742 2222333 37899999888888889999999854
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-14 Score=139.66 Aligned_cols=123 Identities=17% Similarity=0.306 Sum_probs=73.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+............+||+.|||||++....... ........+++++|||||||+||+|++|+
T Consensus 190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~----~~~~~~~~~~~~~DiwSlGvil~ell~G~~ 265 (390)
T 2zmd_A 190 DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSR----ENGKSKSKISPKSDVWSLGCILYYMTYGKT 265 (390)
T ss_dssp SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC----------------CCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccc----cccccccCCCChhhHHHHHHHHHHHHHCCC
Confidence 4678999 7777776554443455789999999999992211100 00111246889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh----c-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF----G-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||......... ...+..... + .....+.+++.+||..+|.+||++.++.+
T Consensus 266 Pf~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 266 PFQQIINQISK-----------------------LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp TTTTCCCHHHH-----------------------HHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cchhhhHHHHH-----------------------HHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 99763221000 000000000 0 11123778999999999999999888765
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-14 Score=138.57 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=78.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+.+... .+...|||.|||||++ .+ ..+++++|||||||+||+|++|.
T Consensus 140 ~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~ll~g~~ 201 (321)
T 1tki_A 140 SSTIKIIEFGQARQLKPGDN---FRLLFTAPEYYAPEVH------QH---------DVVSTATDMWSLGTLVYVLLSGIN 201 (321)
T ss_dssp CCCEEECCCTTCEECCTTCE---EEEEESCGGGSCHHHH------TT---------CEECHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCeECCCCCc---cccccCChhhcCcHHh------cC---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 4567888 66776654432 4568999999999999 44 45788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+.... ............ ......+.+++.+||..+|.+||++.++.+
T Consensus 202 pf~~~~~~~~~~~i---------~~~~~~~~~~~~--------~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 202 PFLAETNQQIIENI---------MNAEYTFDEEAF--------KEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp TTCCSSHHHHHHHH---------HHTCCCCCHHHH--------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCcCCCHHHHHHHH---------HcCCCCCChhhh--------ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 99876444211000 000000000101 112234788999999999999999988766
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-14 Score=141.97 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=76.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++...+... ....+||+.|||||++ .+ ..+++++|||||||+||+|++|. |
T Consensus 168 ~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~ll~g~~P 229 (362)
T 2bdw_A 168 AAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVL------KK---------DPYSKPVDIWACGVILYILLVGYPP 229 (362)
T ss_dssp CCEEECCCTTCBCCTTCCS---CCCSCSCTTTCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeecCcceEecCCcc---cccCCCCccccCHHHH------cc---------CCCCchhhHHHHHHHHHHHHHCCCC
Confidence 357888 66776664432 4568999999999999 43 56789999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+... . ...+.. ........+.+++.+||..+|.+||++.++.+
T Consensus 230 f~~~~~~~~~~~i~~~-~-----~~~~~~------------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 230 FWDEDQHRLYAQIKAG-A-----YDYPSP------------EWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp SCCSSHHHHHHHHHHT-C-----CCCCTT------------GGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCCHHHHHHHHHhC-C-----CCCCcc------------cccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 9875443211 00000 0 000000 01111234778999999999999999877654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-11 Score=115.04 Aligned_cols=251 Identities=9% Similarity=-0.009 Sum_probs=165.7
Q ss_pred CCCcEEEEeCCCCceEEEEe------cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceee
Q 009274 270 FDKSIHVWSLKDFSHVHTFK------GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS 343 (538)
Q Consensus 270 ~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
.+++|.+||.++++....+. ........+.+. ++.++++...++.|.+||..+.+....+.. .. ..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---~~---~p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITG---FT---SP 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---CS---SE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCC---CC---CC
Confidence 38899999999988765431 122345777774 566777778889999999987765444421 11 11
Q ss_pred eEEEEeecCCEEEEee-CCCcEEEEECCCCceeEEecCCC-----CCeEEEEEeCCEEEEEe--cCCcEEEEECCCCcee
Q 009274 344 GIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSGHK-----SAVSTLAVCNGVLYSGS--RDGTIRLWSLSDHSLL 415 (538)
Q Consensus 344 ~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~s--~dg~i~iwd~~~~~~~ 415 (538)
...+++++++ ++++. .++.|.+||..+++....+.... .....+++.++.++++. .++.|.++|+.+++..
T Consensus 87 ~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 87 RYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred cEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 2346777874 55554 78999999999998887765433 14556777877766666 4899999999999988
Q ss_pred EEEecCCCCceEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCc--ceeeeccc-cceEEEEEe--CCCEEEEE
Q 009274 416 TVLEEDSSGAVSSVLSLTAVQHTLVVSHES----------GSIKVWRNDK--FMKSMQTH-KGSVFAVFL--EGKWLFTG 480 (538)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~--~~~~~~~h-~~~v~~~~~--~~~~l~sg 480 (538)
..+..... . ..+.++++|++++++..+ +.|.++|..+ ....+... ......+++ +++.|+++
T Consensus 166 ~~i~~g~~--p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 166 DELTIGIQ--P-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EEEECSSC--B-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred EEEEcCCC--c-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE
Confidence 87765322 1 226889999877776654 7899999653 34344322 123455555 68888887
Q ss_pred eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-e-CCEEEEE-----ECCCeEEEEEcC
Q 009274 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-W-QGKLFVG-----CADRTVKVYYYG 537 (538)
Q Consensus 481 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~sg-----~~dg~v~vw~~~ 537 (538)
.. .|.+||..+++......... .......+.. + ++.++++ ..++.|.+|+..
T Consensus 243 ~~--~v~~~d~~t~~~~~~~~~~~---~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRPFLEF---RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SS--SEEEEETTCSSCCSSCSBCC---CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred cc--EEEEEECCCCceeeeeeecC---CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 65 89999998877531111000 1223344444 3 5666665 468899999853
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-14 Score=138.88 Aligned_cols=124 Identities=18% Similarity=0.314 Sum_probs=71.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+............+||+.|||||++...... .+.......+++++|||||||+||+|++|+
T Consensus 143 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~~~~~~~~~~~DiwslG~il~ell~g~~ 218 (343)
T 3dbq_A 143 DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSS----RENGKSKSKISPKSDVWSLGCILYYMTYGKT 218 (343)
T ss_dssp TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC---------------CCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhcccc----ccccccccCCCchhhHHHHHHHHHHHHhCCC
Confidence 5668998 677777665544445578999999999999432111 001112356788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh----hc-CccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK----FG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||......... ........ .+ .....+.+++.+||..+|.+||++.++.+.
T Consensus 219 pf~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 219 PFQQIINQISK-----------------------LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp TTTTCCSHHHH-----------------------HHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cchhhhhHHHH-----------------------HHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 99753221000 00000000 01 111247889999999999999998887653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-11 Score=121.24 Aligned_cols=276 Identities=6% Similarity=-0.011 Sum_probs=160.6
Q ss_pred EEEEEEc--CCEEEEEeCC---CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 255 VTGLAVG--GGFLFSSSFD---KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
+.+++|+ |++|+.+..+ ..|.+||+.+++.......+......+.|+|++. .++.++.++.|++||+.++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER-AFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC-EEEEEEcCCcEEEEECCCCCcEE
Confidence 6677888 8887776543 4688889988876544333333333478999665 55667777899999988654321
Q ss_pred ceeeecccCCceee-e-E---------------EEEeecCCEEEEe-----eCCCcEEEEECCCCceeEEecCCCCCeEE
Q 009274 330 PLKKWNEEKDWRYS-G-I---------------HALTTSGRYLYTG-----SGDRTIKAWSLLDGTLSCTMSGHKSAVST 387 (538)
Q Consensus 330 ~~~~~~~~~~~~~~-~-~---------------~~~~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 387 (538)
... .+..+... . + ..++|+++.++.+ ..+..|++||+.+++..... .+...+..
T Consensus 117 ~~~---~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~ 192 (396)
T 3c5m_A 117 IYT---VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGH 192 (396)
T ss_dssp EEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEE
T ss_pred EEe---cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccccc
Confidence 111 11111100 0 0 1345666655443 35678999999988765544 46677899
Q ss_pred EEEeC--C-EEEEEecC------CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 009274 388 LAVCN--G-VLYSGSRD------GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-----GSIKVWRN 453 (538)
Q Consensus 388 l~~~~--~-~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 453 (538)
+.|++ + .++..+.+ ..|.+||+.+++.. .+..+........+.|+|+|+.|+.++.+ +.|++||.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 99985 3 46555543 46889998765533 23222222233446999999987776543 44999996
Q ss_pred Ccc-eeeeccccceEEEEEe-CCCEEEEEe----------------CCCeEEEEecCCCeeEeeeecCCcc-----cCC-
Q 009274 454 DKF-MKSMQTHKGSVFAVFL-EGKWLFTGG----------------WDKTVSVQELAGDEFEEDVIPTGAI-----PCG- 509 (538)
Q Consensus 454 ~~~-~~~~~~h~~~v~~~~~-~~~~l~sgs----------------~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~- 509 (538)
... ...+.........+++ +|+++++++ .++.|++||+.+++......+.... ...
T Consensus 272 ~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 351 (396)
T 3c5m_A 272 ETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQI 351 (396)
T ss_dssp TTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSST
T ss_pred CCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccC
Confidence 432 2222211111145567 899888765 3478999999887654333322110 000
Q ss_pred CceEEEEEeCCE-EEEEE-CCCeEEEEEc
Q 009274 510 SVITALLYWQGK-LFVGC-ADRTVKVYYY 536 (538)
Q Consensus 510 ~~~~~~~~~~~~-l~sg~-~dg~v~vw~~ 536 (538)
......+.+++. |+.++ .++...+|.+
T Consensus 352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 352 THPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 011223455664 55544 4666666654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-11 Score=126.15 Aligned_cols=242 Identities=11% Similarity=0.079 Sum_probs=157.3
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCC-----cEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCc------
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDK-----SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG------ 316 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~------ 316 (538)
+|...+.+++|+ |++|+.++.++ .|++||+.+++.......+ ..+..++|+|++..++ .++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~-~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMF-YNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEE-EEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEE-EEEECCccccccc
Confidence 355568889999 88888776543 8999999999877643222 2367899999776554 4444444
Q ss_pred ----------EEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-----CCcEEEEECCC------Cc-e
Q 009274 317 ----------IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-----DRTIKAWSLLD------GT-L 374 (538)
Q Consensus 317 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-----dg~i~iwd~~~------~~-~ 374 (538)
|++|++.++.....+. ..............+++||++|+.++. +..|++||+.+ +. .
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILC-AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred cccccCCCCEEEEEECCCCcccceEE-eccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 9999998764322221 111111111224578999998887765 57899999976 43 3
Q ss_pred eEEecCCCCCeEEEEEe--CCEEEEEecC----CcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEeCCC
Q 009274 375 SCTMSGHKSAVSTLAVC--NGVLYSGSRD----GTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 375 ~~~~~~h~~~v~~l~~~--~~~l~s~s~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 446 (538)
...+..+...+... |+ ++.|+..+.+ +.|.+||+.++.. ...+..+........+.+++++.++++...|+
T Consensus 279 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 279 WVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 55666666665553 44 6666555543 3699999988752 34444443322333357777778888888888
Q ss_pred c--EEEEeC--CcceeeeccccceEEEEEe--CCCEEE-EEe---CCCeEEEEecCCCe
Q 009274 447 S--IKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLF-TGG---WDKTVSVQELAGDE 495 (538)
Q Consensus 447 ~--i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~-sgs---~dg~v~iwd~~~~~ 495 (538)
. |.+||. ++....+..+.+.+..+++ +++.++ +.+ ..++|+.||+.+++
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5 455675 3456777777778887776 666555 323 34789999998766
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-14 Score=137.67 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=83.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++..|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||+||||+| |+
T Consensus 239 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DvwslG~il~ellt~g~ 303 (370)
T 2psq_A 239 NNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL------FD---------RVYTHQSDVWSFGVLMWEIFTLGG 303 (370)
T ss_dssp TCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHH------HT---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEccccCCcccCcccceecccCCCcccceECHhHh------cC---------CCCCcHHHHHHHHHHHHHHHcCCC
Confidence 3567898 677766654433234457889999999999 43 567899999999999999999 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.....+... +........ ......+.+++.+||..+|.+||++.++.+.+.++
T Consensus 304 ~p~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i 362 (370)
T 2psq_A 304 SPYPGIPVEELFKL---------------------LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 362 (370)
T ss_dssp CSSTTCCGGGHHHH---------------------HHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH---------------------HhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 9987544311100 000000000 11122478899999999999999999999988876
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 363 l 363 (370)
T 2psq_A 363 L 363 (370)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-14 Score=135.49 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=75.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++....... ....+||+.|||||++ .| ....++++|||||||+||+|++|+ |
T Consensus 151 ~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~p 213 (328)
T 3fe3_A 151 MNIKIADFGFSNEFTVGGK---LDAFCGAPPYAAPELF------QG--------KKYDGPEVDVWSLGVILYTLVSGSLP 213 (328)
T ss_dssp SCEEECSTTCCGGGSSSCG---GGTTSSSGGGCCHHHH------HT--------CCCCSHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeeccCceecCCCCc---cccccCCcceeCcccc------cC--------CCcCCchhhhhhhHHHHHHHHhCCCC
Confidence 457888 66766654432 5678999999999999 43 122347899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.....+.. .+... ....+ .....+.+++.+||..+|.+||++.++.+
T Consensus 214 f~~~~~~~~~~---------------------~i~~~-~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 214 FDGQNLKELRE---------------------RVLRG-KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp SCCSSHHHHHH---------------------HHHHC-CCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred CCCCCHHHHHH---------------------HHHhC-CCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 98765442110 00000 00000 11223778999999999999999888765
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-14 Score=139.58 Aligned_cols=129 Identities=12% Similarity=0.150 Sum_probs=81.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+. |+++...............||+.|||||++ .+ ..+++++|||||||+||+|+||+ |
T Consensus 176 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~g~~p 240 (321)
T 2qkw_B 176 FVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYF------IK---------GRLTEKSDVYSFGVVLFEVLCARSA 240 (321)
T ss_dssp CCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHH------HH---------CBCCTHHHHHHHHHHHHHHHHCCTT
T ss_pred CCEEEeecccccccccccccccccccCCCccccCHHHh------cC---------CCCCcccchHhHHHHHHHHHhCCCc
Confidence 467888 555554433333234467899999999998 22 56789999999999999999999 9
Q ss_pred cchhhhhheeeccc----cccCcchh-hc--chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVST----KASDDNIA-CL--GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~----~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|....+........ ......+. .. ....... +..+. .+.+++.+||+.+|.+||++.++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~l~~li~~~l~~dP~~Rps~~ell~~ 309 (321)
T 2qkw_B 241 IVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIR---PESLR--------KFGDTAVKCLALSSEDRPSMGDVLWK 309 (321)
T ss_dssp CSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSC---HHHHH--------HHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred ccccCcHHHHHHHHHhhhccccccHHHhcChhhccccC---HHHHH--------HHHHHHHHHcCCCcccCcCHHHHHHH
Confidence 98754432110000 00000000 00 0000000 11111 27789999999999999999999988
Q ss_pred HHHhh
Q 009274 162 IRELI 166 (538)
Q Consensus 162 l~~l~ 166 (538)
+..++
T Consensus 310 L~~~l 314 (321)
T 2qkw_B 310 LEYAL 314 (321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.8e-14 Score=131.81 Aligned_cols=114 Identities=16% Similarity=0.243 Sum_probs=76.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+...... ....+||+.|||||++ .+ ..+++++|||||||+||+|+||+
T Consensus 152 ~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~ 214 (297)
T 3fxz_A 152 DGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVV------TR---------KAYGPKVDIWSLGIMAIEMIEGEP 214 (297)
T ss_dssp TCCEEECCCTTCEECCSTTCC--BCCCCSCGGGCCHHHH------HC---------SCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeeCCCceecCCcccc--cCCccCCcCccChhhh------cC---------CCCCcHHHHHHHHHHHHHHHhCCC
Confidence 3457888 556666544322 4568999999999999 43 56789999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||......... .+...... ... ........+.+++.+||..+|.+||++.++.+
T Consensus 215 pf~~~~~~~~~~~~~~~~~~----~~~---------------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 215 PYLNENPLRALYLIATNGTP----ELQ---------------NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp TTTTSCHHHHHHHHHHHCSC----CCS---------------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCCCC----CCC---------------CccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 99775433111 00000000 000 00011123778999999999999999887754
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-14 Score=136.91 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=71.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++....... ...+++||+.|||||++ .+ ..++.++|+|||||+||||++|+ |
T Consensus 190 g~ikL~DFGla~~~~~~~~--~~~~~~gt~~Y~aPE~l------~~---------~~~~~~~DiwslGvllyell~G~~P 252 (396)
T 4dc2_A 190 GHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL------RG---------EDYGFSVDWWALGVLMFEMMAGRSP 252 (396)
T ss_dssp SCEEECCCTTCBCCCCTTC--CBCCCCBCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeecceeeecccCCC--ccccccCCcccCCchhh------cC---------CCCChHHHHHHHHHHHHHHHhCCCC
Confidence 457888 66665332222 15579999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|......... ...........+... ....+ .....+.+++.+||..+|.+|+++
T Consensus 253 f~~~~~~~~~------------~~~~~~~~~~~i~~~-~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 253 FDIVGSSDNP------------DQNTEDYLFQVILEK-QIRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp STTTTC------------------CCHHHHHHHHHHC-CCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred Cccccccccc------------chhhHHHHHHHHhcc-ccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 9753221000 000000000101000 00111 112347889999999999999986
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-14 Score=135.72 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=70.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++....... ...+++||+.|||||++ .+ ..++.++|+|||||+||||++|+ |
T Consensus 142 g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~P 204 (337)
T 1o6l_A 142 GHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRLP 204 (337)
T ss_dssp SCEEECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGG------SS---------SCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeeccchhhcccCCC--cccccccChhhCChhhh------cC---------CCCCchhhcccchhHHHHHhcCCCC
Confidence 457888 56665433322 25578999999999998 43 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|.......+... +... ....+ .....+.+++.+||..+|.+||.
T Consensus 205 f~~~~~~~~~~~---------------------i~~~-~~~~p~~~s~~~~~li~~lL~~dP~~R~g 249 (337)
T 1o6l_A 205 FYNQDHERLFEL---------------------ILME-EIRFPRTLSPEAKSLLAGLLKKDPKQRLG 249 (337)
T ss_dssp SCCSSHHHHHHH---------------------HHHC-CCCCCTTSCHHHHHHHHHHTCSSTTTSTT
T ss_pred CCCCCHHHHHHH---------------------HHcC-CCCCCCCCCHHHHHHHHHHhhcCHHHhcC
Confidence 987544421100 0000 00000 11224778999999999999993
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=131.14 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=80.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++....... .....||+.|||||++...... ......++.++|||||||+||+|+||+
T Consensus 152 ~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~-------~~~~~~~~~~~DiwslG~il~el~~g~~ 221 (319)
T 4euu_A 152 QSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLR-------KDHQKKYGATVDLWSIGVTFYHAATGSL 221 (319)
T ss_dssp CEEEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHTSC-------CCCCCCBCTTHHHHHHHHHHHHHHHSSC
T ss_pred CceEEEccCCCceecCCCCc---eeecccCCCccCHHHhhhcccc-------ccccCCCCcHHHHHHHHHHHHHHHhCCC
Confidence 4568888 66776655432 4468899999999998433211 011356789999999999999999999
Q ss_pred ccchhhhh-----heeeccccccC----------cchhhcc-h-h--hHHHHHHHHHHHhhhcCccchHHHHHhhhhccC
Q 009274 88 QFTKELID-----YIRCVSTKASD----------DNIACLG-M-Y--MAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFD 148 (538)
Q Consensus 88 pf~~~~~~-----~~~~~~~~~~~----------~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 148 (538)
||...... .+..+...... .....+. . + .......+. .+.+++.+||..+
T Consensus 222 pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~ll~~~L~~d 290 (319)
T 4euu_A 222 PFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQV-----------LLTPVLANILEAD 290 (319)
T ss_dssp SEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHH-----------HHHHHHHHHSCCC
T ss_pred CCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHH-----------HhHHHHHHhccCC
Confidence 99743211 00000000000 0000000 0 0 000011111 2677999999999
Q ss_pred CCCCcchhhHHHHHHH
Q 009274 149 PGCRPLLTNVWKCIRE 164 (538)
Q Consensus 149 p~~r~~~~~~~~~l~~ 164 (538)
|.+||++.++.+....
T Consensus 291 P~~R~s~~ell~h~~d 306 (319)
T 4euu_A 291 QEKCWGFDQFFAETSD 306 (319)
T ss_dssp TTTSCCHHHHHHHHHH
T ss_pred hhhhccHHHhhhccHH
Confidence 9999999998887554
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-14 Score=137.27 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=75.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ ||
T Consensus 171 ~vkl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~ll~g~~pf 233 (351)
T 3c0i_A 171 PVKLGGFGVAIQLGESGL--VAGGRVGTPHFMAPEVV------KR---------EPYGKPVDVWGCGVILFILLSGCLPF 233 (351)
T ss_dssp CEEECCCTTCEECCTTSC--BCCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEecCcceeEecCCCe--eecCCcCCcCccCHHHH------cC---------CCCCchHhhHHHHHHHHHHHHCCCCC
Confidence 46888 56666654322 24568999999999999 44 56789999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.+........+.. .. ....+. ........+.+++.+||..+|.+||++.++.+
T Consensus 234 ~~~~~~~~~~i~~-~~-----~~~~~~------------~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 234 YGTKERLFEGIIK-GK-----YKMNPR------------QWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp CSSHHHHHHHHHH-TC-----CCCCHH------------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCcHHHHHHHHHc-CC-----CCCCcc------------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 8754331110000 00 000000 00112234788999999999999999887664
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-14 Score=136.25 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=74.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++....... ...+++||+.|||||++ .+ ..++.++|+|||||++|||++|+ |
T Consensus 176 g~ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~G~~P 238 (373)
T 2r5t_A 176 GHIVLTDFGLCKENIEHNS--TTSTFCGTPEYLAPEVL------HK---------QPYDRTVDWWCLGAVLYEMLYGLPP 238 (373)
T ss_dssp SCEEECCCCBCGGGBCCCC--CCCSBSCCCCCCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeeCccccccccCCC--ccccccCCccccCHHHh------CC---------CCCCchhhhHHHHHHHHHHHcCCCC
Confidence 457888 66665333222 25579999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
|.+.+...+. ..+..............+.+++.+||..+|.+||.+.+..
T Consensus 239 f~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~ 288 (373)
T 2r5t_A 239 FYSRNTAEMY---------------------DNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDF 288 (373)
T ss_dssp TCCSBHHHHH---------------------HHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred CCCCCHHHHH---------------------HHHHhcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCH
Confidence 9876444211 0000000000011122477899999999999999976433
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-14 Score=137.64 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=66.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+|+....... ...+++||+.|||||++. + ..+++++|||||||++|||++|+ |
T Consensus 161 g~ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~------~---------~~~~~~~DiwslG~il~ell~G~~P 223 (353)
T 3txo_A 161 GHCKLADFGMCKEGICNGV--TTATFCGTPDYIAPEILQ------E---------MLYGPAVDWWAMGVLLYEMLCGHAP 223 (353)
T ss_dssp SCEEECCCTTCBCSCC-----------CCGGGCCHHHHH------H---------HHCTTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEccccceeecccCCc--cccccCCCcCeEChhhcC------C---------CCcCCccCCCcchHHHHHHHhCCCC
Confidence 457888 56665433322 255789999999999992 2 44678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|.+.+...+........ ...+ ......+.+++.+||.++|.+||++
T Consensus 224 f~~~~~~~~~~~i~~~~------~~~p---------------~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 224 FEAENEDDLFEAILNDE------VVYP---------------TWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp SCCSSHHHHHHHHHHCC------CCCC---------------TTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred CCCCCHHHHHHHHHcCC------CCCC---------------CCCCHHHHHHHHHHhhhCHHHccCC
Confidence 98765542220000000 0000 0111237789999999999999997
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-14 Score=134.49 Aligned_cols=121 Identities=13% Similarity=0.161 Sum_probs=82.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+-.|+. |+++.+.........+...||+.|||||++ .+ ..+++++|||||||++|+|+| |+
T Consensus 152 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~~g~~ 216 (325)
T 3kex_A 152 SQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESI------HF---------GKYTHQSDVWSYGVTVWELMTFGAE 216 (325)
T ss_dssp SCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CeEEECCCCcccccCcccccccccCCCCcccccChHHh------cc---------CCCChhhHhHHhHHHHHHHHhCCCC
Confidence 457888 677777665544445678899999999999 32 567899999999999999999 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHH-hhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+... +..... .........+.+++.+||..+|.+||++.++.+.+.++.
T Consensus 217 p~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 217 PYAGLRLAEVPDL---------------------LEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp TTTTSCTTHHHHH---------------------HHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred CccccCHHHHHHH---------------------HHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 9987543311100 000000 000112234788999999999999999999999988876
Q ss_pred cC
Q 009274 167 IK 168 (538)
Q Consensus 167 ~~ 168 (538)
..
T Consensus 276 ~~ 277 (325)
T 3kex_A 276 RD 277 (325)
T ss_dssp TS
T ss_pred hc
Confidence 43
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-14 Score=135.05 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=71.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...............||+.|||||++ .+ .....++.++||||||+++|+|++|+ |
T Consensus 157 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~------~~~~~~~~~~Di~slG~il~el~~g~~p 224 (289)
T 3og7_A 157 NTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI------RM------QDSNPYSFQSDVYAFGIVLYELMTGQLP 224 (289)
T ss_dssp TEEEECCCC------------------CCCTTCCHHHH------C----------CCSCHHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEccceeccccccccccccccccCCCccccCchhh------cc------cCCCCCCcccchHHHHHHHHHHHHCCCC
Confidence 457888 556555443333335568899999999998 21 01245678999999999999999999 9
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
|...... .+..... ....... +..........+.+++.+||..+|.+||++.++.+.+.++.
T Consensus 225 ~~~~~~~~~~~~~~~--------~~~~~~~--------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 225 YSNINNRDQIIEMVG--------RGSLSPD--------LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp TSSCCCHHHHHHHHH--------HTSCCCC--------TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHhc--------ccccCcc--------hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 9764222 1000000 0000000 00000111234788999999999999999999998887764
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-14 Score=139.03 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=82.5
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-p 88 (538)
.+|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||+||||+| |. |
T Consensus 222 ~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DvwslG~il~ellt~g~~p 286 (367)
T 3l9p_A 222 VAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAF------ME---------GIFTSKTDTWSFGVLLWEIFSLGYMP 286 (367)
T ss_dssp CEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred eEEECCCccccccccccccccCCCcCCcccEECHHHh------cC---------CCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 58888 666655443322224457899999999998 22 567899999999999999998 88 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
|.......+. .+.. .. ... ........+.+++.+||+.+|.+||++.++.+.+..+..
T Consensus 287 f~~~~~~~~~~~i~~-~~-----~~~---------------~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~ 345 (367)
T 3l9p_A 287 YPSKSNQEVLEFVTS-GG-----RMD---------------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 345 (367)
T ss_dssp STTCCHHHHHHHHHT-TC-----CCC---------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc-CC-----CCC---------------CCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhh
Confidence 9875444211 0000 00 000 000112237789999999999999999999988877764
Q ss_pred CC
Q 009274 168 KP 169 (538)
Q Consensus 168 ~~ 169 (538)
.+
T Consensus 346 ~~ 347 (367)
T 3l9p_A 346 DP 347 (367)
T ss_dssp CH
T ss_pred Ch
Confidence 43
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=135.26 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=81.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||+||+|+| |+
T Consensus 229 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~ 293 (359)
T 3vhe_A 229 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI------FD---------RVYTIQSDVWSFGVLLWEIFSLGA 293 (359)
T ss_dssp GGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCcEEEEeccceeeecccccchhccccCCCceeEChhhh------cC---------CCCCchhhhhhHHHHHHHHHhcCC
Confidence 3567888 666666544333335568999999999999 22 557799999999999999999 99
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+....... ............ ......+.+++.+||+.+|.+||++.++.+.+..+
T Consensus 294 ~p~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 353 (359)
T 3vhe_A 294 SPYPGVKIDEEF--------------------CRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353 (359)
T ss_dssp CSSTTCCCSHHH--------------------HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCccchhHHH--------------------HHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 99875322000 000000000000 11223478899999999999999999999988877
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 354 ~ 354 (359)
T 3vhe_A 354 L 354 (359)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-13 Score=133.24 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=82.8
Q ss_pred eeeec--cccccccccchhh-----hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 13 VAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
.+|+. |+++.+....... ..+...||+.|||||++ .+ ..+++++|||||||+||+|++
T Consensus 199 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~ 263 (352)
T 2jii_A 199 QVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLH------KG---------CGPSRRSDLQSLGYCMLKWLY 263 (352)
T ss_dssp EEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCcceeeccCCCccccccccccccccCCccccCHHHH------cc---------CCCCchhhHHHHHHHHHHHHh
Confidence 67888 5666665443211 12456999999999999 44 567899999999999999999
Q ss_pred cC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh------cCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF------GSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
|+ ||......... ... ........+.... ......+.+++.+||..+|.+||++.++
T Consensus 264 g~~pf~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 327 (352)
T 2jii_A 264 GFLPWTNCLPNTED------------IMK----QKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAML 327 (352)
T ss_dssp SCCTTGGGTTCHHH------------HHH----HHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHH
T ss_pred CCCCcccCCcCHHH------------HHH----HHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHH
Confidence 99 99875322000 000 0000000000000 0113458889999999999999999999
Q ss_pred HHHHHHhhc
Q 009274 159 WKCIRELII 167 (538)
Q Consensus 159 ~~~l~~l~~ 167 (538)
.+.+.++..
T Consensus 328 ~~~L~~~~~ 336 (352)
T 2jii_A 328 RNNLEALLQ 336 (352)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888763
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-13 Score=134.48 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=71.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... ...+++||+.|||||++ .+ ..++.++|+|||||++|||++|+ |
T Consensus 158 g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~G~~P 220 (353)
T 2i0e_A 158 GHIKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEII------AY---------QPYGKSVDWWAFGVLLYEMLAGQAP 220 (353)
T ss_dssp SCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHH------TT---------CCBSTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEEeCCcccccccCCc--ccccccCCccccChhhh------cC---------CCcCCcccccchHHHHHHHHcCCCC
Confidence 467888 56665332222 25578999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|.+.....+........ ...+ ......+.+++.+||..+|.+||..
T Consensus 221 f~~~~~~~~~~~i~~~~------~~~p---------------~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 221 FEGEDEDELFQSIMEHN------VAYP---------------KSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp SCCSSHHHHHHHHHHCC------CCCC---------------TTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred CCCCCHHHHHHHHHhCC------CCCC---------------CCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 98765442210000000 0000 0112247789999999999999974
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-10 Score=108.56 Aligned_cols=235 Identities=12% Similarity=0.087 Sum_probs=151.1
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC----CcE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG----GGI 317 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i 317 (538)
.+..+.++...+.+++|+ +++++++..++.|.+||.++++.......+...+.++++++++ .++++...+ +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceE
Confidence 345567777888999998 7777788889999999999887766554567889999998865 566666655 689
Q ss_pred EEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCCeEEEEEe
Q 009274 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391 (538)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 391 (538)
.+||..+......+... ... .......++++++.+++... .+.|..+|..+++..... .+...+..++|+
T Consensus 115 ~~~d~~~~~~~~~~~~~--~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~ 190 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDL--STA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALS 190 (333)
T ss_dssp EEECTTSCSCEEEECSS--SSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEEC
T ss_pred EEEeCCCCEEEEEEccC--ccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEEC
Confidence 99998765432111100 111 12223467788887766553 356777776655543322 233457889998
Q ss_pred -C-CEEE-EEecCCcEEEEECCC-CceeEEE-----ecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-cceeeec
Q 009274 392 -N-GVLY-SGSRDGTIRLWSLSD-HSLLTVL-----EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQ 461 (538)
Q Consensus 392 -~-~~l~-s~s~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~ 461 (538)
+ +.++ +.+.++.|.+||+.+ +.....+ ...........++++++|+++++...++.|.+||.. +....+.
T Consensus 191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~ 270 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQIL 270 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEE
Confidence 3 4454 445688999999964 3333221 111111233447899999988888888999999964 3344444
Q ss_pred cccc------eEEEEEe--CCCEEEEEeCC
Q 009274 462 THKG------SVFAVFL--EGKWLFTGGWD 483 (538)
Q Consensus 462 ~h~~------~v~~~~~--~~~~l~sgs~d 483 (538)
.+.. .+.++++ +++.|+.++.+
T Consensus 271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 271 IPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 3322 4566665 66677665555
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=129.58 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=76.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .+..+||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 157 ~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~l~~g~~p 218 (308)
T 3g33_A 157 GTVKLADFGLARIYSYQMA---LTPVVVTLWYRAPEVL------LQ---------STYATPVDMWSVGCIFAEMFRRKPL 218 (308)
T ss_dssp SCEEECSCSCTTTSTTCCC---SGGGGCCCSSCCHHHH------HT---------SCCCSTHHHHHHHHHHHHTTTSSCS
T ss_pred CCEEEeeCccccccCCCcc---cCCccccccccCchHH------cC---------CCCCchHHHHHHHHHHHHHHhCCCC
Confidence 457888 56666554332 4578999999999999 33 56789999999999999999999 9
Q ss_pred cchhhhhhee-ec-c---ccccCc-----chhh----cchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIR-CV-S---TKASDD-----NIAC----LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~-~~-~---~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|.+....... .+ + ...... .+.. ......... ..+.....+.+++.+||..+|.+||+
T Consensus 219 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~li~~~L~~dP~~R~t 290 (308)
T 3g33_A 219 FCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQS--------VVPEMEESGAQLLLEMLTFNPHKRIS 290 (308)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHH--------HSCSCCHHHHHHHHHHTCSSTTTSCC
T ss_pred CCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHH--------hCccccHHHHHHHHHHhcCCCccCCC
Confidence 9775433111 00 0 000000 0000 000000000 01112234788999999999999999
Q ss_pred hhhHHH
Q 009274 155 LTNVWK 160 (538)
Q Consensus 155 ~~~~~~ 160 (538)
+.++.+
T Consensus 291 ~~e~l~ 296 (308)
T 3g33_A 291 AFRALQ 296 (308)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 887654
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-14 Score=134.97 Aligned_cols=122 Identities=12% Similarity=0.135 Sum_probs=81.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+.+|+. |+|+.+.............||+.|||||++ .+ ..+++++|||||||+||+|+| |+
T Consensus 154 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~~ 218 (327)
T 3poz_A 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI------LH---------RIYTHQSDVWSYGVTVWELMTFGSK 218 (327)
T ss_dssp TEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEccCcceeEccCCcccccccCCCccccccChHHh------cc---------CCCCchhhhhhhHHHHHHHHhcCCC
Confidence 457888 667776655444334567889999999999 32 567899999999999999999 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
||.+.....+........ . ..........+.+++.+||..+|.+||++.++.+.+..+..
T Consensus 219 p~~~~~~~~~~~~~~~~~-------~-------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 219 PYDGIPASEISSILEKGE-------R-------------LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTTTCCGGGHHHHHHTTC-------C-------------CCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHcCC-------C-------------CCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 998754432110000000 0 00001122247789999999999999999999988888764
Q ss_pred C
Q 009274 168 K 168 (538)
Q Consensus 168 ~ 168 (538)
.
T Consensus 279 ~ 279 (327)
T 3poz_A 279 D 279 (327)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-14 Score=134.73 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=74.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++........ ..+++||+.|||||++ .+ ..++.++|+|||||++|||++|+ |
T Consensus 155 g~vkL~DFG~a~~~~~~~~~--~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~P 217 (345)
T 1xjd_A 155 GHIKIADFGMCKENMLGDAK--TNTFCGTPDYIAPEIL------LG---------QKYNHSVDWWSFGVLLYEMLIGQSP 217 (345)
T ss_dssp SCEEECCCTTCBCCCCTTCC--BCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeEChhhhhcccCCCc--ccCCCCCcccCChhhh------cC---------CCCCChhhhHHHHHHHHHHhcCCCC
Confidence 457888 566654322221 4578999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchh-hHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLT-NVW 159 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~-~~~ 159 (538)
|.+.+...+. .+. ... ...+ .....+.+++.+||..+|.+||+.. ++.
T Consensus 218 f~~~~~~~~~~~i~---------~~~--------------~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 218 FHGQDEEELFHSIR---------MDN--------------PFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp SCCSSHHHHHHHHH---------HCC--------------CCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CCCCCHHHHHHHHH---------hCC--------------CCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 9876544221 000 000 0000 1112377899999999999999986 543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-11 Score=128.61 Aligned_cols=242 Identities=9% Similarity=-0.026 Sum_probs=152.8
Q ss_pred cCCCcEEEEEEc--CCEEE-----EEeCCCcEEEEeCCCCceEEEEecCCcCe--EEEEEecCCCCEEEEEcCCCc----
Q 009274 250 GHRDCVTGLAVG--GGFLF-----SSSFDKSIHVWSLKDFSHVHTFKGHDHKV--MAVVYVDEDQPLCISGDSGGG---- 316 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~-----s~s~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~~~dg~---- 316 (538)
+|...+.+++|+ |++|+ .|+.+.+|++||+.+++.+. ..+...+ ..++|+|++.. |+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~-l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKG-FYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSE-EEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCE-EEEEEecCCCCCc
Confidence 566678999999 88888 44556789999999988641 1122222 68899997664 455555554
Q ss_pred ---------EEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC----cEEEEECCCCceeEEecCCCC
Q 009274 317 ---------IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR----TIKAWSLLDGTLSCTMSGHKS 383 (538)
Q Consensus 317 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~h~~ 383 (538)
|++|++.++.....+. ..............+++||++|+.++.++ .|++||..+++. ..+..+..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv-~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVV-HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEE-ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSS
T ss_pred cccCCCCCEEEEEECCCCchhceEE-EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCC
Confidence 9999998765322211 11111111222457899999888877666 788887665543 34444555
Q ss_pred CeEEEEEe-CCEEEEEec----CCcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--C-
Q 009274 384 AVSTLAVC-NGVLYSGSR----DGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--N- 453 (538)
Q Consensus 384 ~v~~l~~~-~~~l~s~s~----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~- 453 (538)
.+....+. ++ ++..+. ++.|.+||+.+++. ...+..+........++++ ++.++++...|+..++|. .
T Consensus 273 ~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 273 AKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp CCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 56666667 44 444443 58899999987753 2344333323333334666 677888888999888885 3
Q ss_pred Ccceeeeccc-cceEEEEEe--CCCEEEEE----eCCCeEEEEecCCCeeEe
Q 009274 454 DKFMKSMQTH-KGSVFAVFL--EGKWLFTG----GWDKTVSVQELAGDEFEE 498 (538)
Q Consensus 454 ~~~~~~~~~h-~~~v~~~~~--~~~~l~sg----s~dg~v~iwd~~~~~~~~ 498 (538)
++....+..+ .+.+..+++ +++.++.. ...++|++||+.+++...
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~ 402 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSEL 402 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 3345555555 556666654 67666632 234789999998876543
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=131.74 Aligned_cols=115 Identities=20% Similarity=0.265 Sum_probs=72.0
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
++|+. |+++.+... .....||+.|||||++ .+ ..+++++|||||||++|+|+||+ ||
T Consensus 144 ~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~p~ 203 (307)
T 2eva_A 144 VLKICDFGTACDIQTH-----MTNNKGSAAWMAPEVF------EG---------SNYSEKCDVFSWGIILWEVITRRKPF 203 (307)
T ss_dssp EEEECCCCC-----------------CCTTSSCHHHH------TC---------CCCCTHHHHHHHHHHHHHHHHTCCTT
T ss_pred EEEEcccccccccccc-----cccCCCCCceEChhhh------CC---------CCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence 47888 555555433 3356899999999999 44 56789999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHH-hhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
......... .. ........ .........+.+++.+||..+|.+||++.++.+.+..+.
T Consensus 204 ~~~~~~~~~------------~~-------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 262 (307)
T 2eva_A 204 DEIGGPAFR------------IM-------WAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLM 262 (307)
T ss_dssp TTTCSSHHH------------HH-------HHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHG
T ss_pred hhhCccHHH------------HH-------HHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 753221000 00 00000000 000111224788999999999999999999999888765
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-14 Score=135.29 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=73.5
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++.+..... ...+.+||+.|||||++.. ..+++++|||||||+||+|++|. ||
T Consensus 158 ~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~---------------~~~~~~~DiwslG~il~ell~g~~Pf 220 (342)
T 2qr7_A 158 SIRICDFGFAKQLRAENG--LLMTPCYTANFVAPEVLER---------------QGYDAACDIWSLGVLLYTMLTGYTPF 220 (342)
T ss_dssp GEEECCCTTCEECBCTTC--CBCCSSCCSSCCCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEEEEECCCcccCcCCCC--ceeccCCCccccCHHHhcC---------------CCCCCccCeeeHhHHHHHHhcCCCCC
Confidence 46888 66666654432 2456899999999999932 33568999999999999999999 99
Q ss_pred chhhh---hheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELI---DYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
..... ..+. ..........+..........+.+++.+||..+|.+||++.++.+
T Consensus 221 ~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 221 ANGPDDTPEEIL-----------------ARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp CSSTTSCHHHHH-----------------HHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCcCCHHHHH-----------------HHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 75311 1110 000000000000000112234788999999999999999887665
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-13 Score=137.37 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=84.8
Q ss_pred eeeeeec--cccccccccchhh-----hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhh
Q 009274 11 KSVAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSL 83 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~l 83 (538)
+...|+. |+++...+..... .....+||+.|||||++ .+ ..++.++|||||||+||+|
T Consensus 142 ~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~------~~---------~~~s~~sDvwSlGvil~el 206 (483)
T 3sv0_A 142 ANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTH------LG---------IEQSRRDDLESLGYVLMYF 206 (483)
T ss_dssp TTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHh------cC---------CCCChHHHHHHHHHHHHHH
Confidence 4567888 6677665543210 12268999999999999 44 5678899999999999999
Q ss_pred hhcC-ccchhhhhheeeccccccCcchhhcchhhHHHHH-HHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 84 LIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK-VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 84 ltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
++|+ ||.+..... ....+...... ...............+.+++.+||..+|.+||...++.+.
T Consensus 207 ltG~~Pf~~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~ 272 (483)
T 3sv0_A 207 LRGSLPWQGLKAGT--------------KKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRL 272 (483)
T ss_dssp HHSSCTTSSCCCSS--------------HHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred HhCCCCCccccchh--------------HHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence 9999 998743220 00001111110 1111111111223458899999999999999999999988
Q ss_pred HHHhhc
Q 009274 162 IRELII 167 (538)
Q Consensus 162 l~~l~~ 167 (538)
+..++.
T Consensus 273 L~~l~~ 278 (483)
T 3sv0_A 273 FRDLFI 278 (483)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=138.62 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=69.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+|+....... ..+..+||+.|||||++ .+ ..++.++|||||||+||+|++|+
T Consensus 285 ~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~ 347 (446)
T 4ejn_A 285 DGHIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRL 347 (446)
T ss_dssp SSCEEECCCCCCCTTCC-------CCSSSCGGGCCHHHH------HT---------SCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEccCCCceeccCCCc--ccccccCCccccCHhhc------CC---------CCCCCccchhhhHHHHHHHhhCCC
Confidence 3568998 66665443322 25679999999999999 43 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP 153 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~ 153 (538)
||.......+.... ...... ........+.+++.+||..+|.+||
T Consensus 348 Pf~~~~~~~~~~~i---------~~~~~~------------~p~~~~~~~~~li~~~L~~dP~~R~ 392 (446)
T 4ejn_A 348 PFYNQDHEKLFELI---------LMEEIR------------FPRTLGPEAKSLLSGLLKKDPKQRL 392 (446)
T ss_dssp SSCCSSHHHHHHHH---------HHCCCC------------CCTTSCHHHHHHHHHHTCSSTTTST
T ss_pred CCCCCCHHHHHHHH---------HhCCCC------------CCccCCHHHHHHHHHHcccCHHHhC
Confidence 99875444211000 000000 0001122477899999999999999
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=136.00 Aligned_cols=64 Identities=27% Similarity=0.553 Sum_probs=52.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+..... ....+||+.|||||++ .+ ..+++++|||||||+||+|+||+
T Consensus 197 ~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltg~~ 256 (382)
T 2vx3_A 197 RSAIKIVDFGSSCQLGQR-----IYQYIQSRFYRSPEVL------LG---------MPYDLAIDMWSLGCILVEMHTGEP 256 (382)
T ss_dssp SCCEEECCCTTCEETTCC-----CCSSCSCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEeccCceecccc-----cccccCCccccChHHH------cC---------CCCCcHHHHHHHHHHHHHHHhCCC
Confidence 3567898 666666543 3468999999999999 44 56889999999999999999999
Q ss_pred ccchhhh
Q 009274 88 QFTKELI 94 (538)
Q Consensus 88 pf~~~~~ 94 (538)
||.+...
T Consensus 257 pf~~~~~ 263 (382)
T 2vx3_A 257 LFSGANE 263 (382)
T ss_dssp SSCCSSH
T ss_pred CCCCCCH
Confidence 9987543
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=133.56 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=71.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+... ..+.+||+.|||||++ .+ ..++.++|+|||||+||+|++|+
T Consensus 177 ~g~~kL~DFg~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~ 236 (350)
T 1rdq_E 177 QGYIQVTDFGFAKRVKGR-----TWTLCGTPEALAPEII------LS---------KGYNKAVDWWALGVLIYEMAAGYP 236 (350)
T ss_dssp TSCEEECCCTTCEECSSC-----BCCCEECGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEcccccceeccCC-----cccccCCccccCHHHh------cC---------CCCCCcCCEecccHhHhHHhhCCC
Confidence 3457888 677776654 3368999999999999 44 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||.......+.. .+... ....+ .....+.+++.+||..+|.+||+
T Consensus 237 Pf~~~~~~~~~~---------------------~i~~~-~~~~p~~~~~~~~~li~~lL~~dp~~R~~ 282 (350)
T 1rdq_E 237 PFFADQPIQIYE---------------------KIVSG-KVRFPSHFSSDLKDLLRNLLQVDLTKRFG 282 (350)
T ss_dssp SSCCSSHHHHHH---------------------HHHHC-CCCCCTTCCHHHHHHHHHHSCSCTTTCTT
T ss_pred CCCCCCHHHHHH---------------------HHHcC-CCCCCCCCCHHHHHHHHHHhhcCHHhccC
Confidence 998764442110 00000 00000 11224788999999999999998
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-13 Score=133.32 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=75.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++.+.+... .....||+.|||||++ .+ ..+++++|||||||+||+|++|+ ||
T Consensus 157 ~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~pf 218 (321)
T 2a2a_A 157 HIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIV------NY---------EPLGLEADMWSIGVITYILLSGASPF 218 (321)
T ss_dssp CEEECCCTTCEECCTTCC---CCCCCSCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSCCSS
T ss_pred CEEEccCccceecCcccc---ccccCCCCCccCcccc------cC---------CCCCCccccHHHHHHHHHHHHCCCCC
Confidence 57888 56666654322 4568899999999999 44 56789999999999999999999 99
Q ss_pred chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.+.....+. .+... ...... . . .......+.+++.+||..+|.+||++.++.+
T Consensus 219 ~~~~~~~~~~~i~~~-------~~~~~~---~-~-------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 219 LGDTKQETLANITSV-------SYDFDE---E-F-------FSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp CCSSHHHHHHHHHTT-------CCCCCH---H-H-------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred CCCCHHHHHHHHHhc-------ccccCh---h-h-------hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 875443111 00000 000000 0 0 0112223778999999999999999887765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-10 Score=114.44 Aligned_cols=262 Identities=11% Similarity=0.031 Sum_probs=168.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc--CCCCCcceeeecccCCc
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS--FPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~ 340 (538)
..+++...+++|.++|..+++.+.++... ..+..+.|+|++. ++++++.|+.|.+||+. +.+.. .......
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v---~~i~~G~-- 240 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTV---AEIKIGS-- 240 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEE---EEEECCS--
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcEe---EEEecCC--
Confidence 45667778999999999999999988744 3567999999665 55667789999999985 44322 2222211
Q ss_pred eeeeEEEEe----ecCCEEEEeeC-CCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe---CCEEEEEecC
Q 009274 341 RYSGIHALT----TSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC---NGVLYSGSRD 401 (538)
Q Consensus 341 ~~~~~~~~~----~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~---~~~l~s~s~d 401 (538)
. ..-.+++ |+|+++++++. +++|.++|..+.+.+..+... ...+..+..+ +.++++...+
T Consensus 241 ~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 E-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp E-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred C-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 1 1245788 69997777665 599999999999988876421 1256777777 2266667778
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCc--ceeeecc-----ccc-eEEEEEe
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK--FMKSMQT-----HKG-SVFAVFL 472 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~-----h~~-~v~~~~~ 472 (538)
|.|.++|..+.+.+............ ...|+|++++++++. .++.|.++|+.+ ....+.. |.+ .+.-+.+
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~-d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLH-DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEE-EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred CeEEEEecCCCccceeeeeecccccc-CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 99999999876543333222222233 368999999987766 578999999654 3333322 432 2222355
Q ss_pred CCC-EEEEEe-CCCeEEEEecCC-------CeeEeeeecCCcccCCCceEEEEEeCCE-EEEEEC-------CCeEEEEE
Q 009274 473 EGK-WLFTGG-WDKTVSVQELAG-------DEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCA-------DRTVKVYY 535 (538)
Q Consensus 473 ~~~-~l~sgs-~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~-------dg~v~vw~ 535 (538)
++. ..+++. .++.|.++|... .+........+ .........+++. +++... .+.|.++|
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g----~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC----CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 544 444443 468999999987 33333333221 1122233455654 555442 35899998
Q ss_pred cC
Q 009274 536 YG 537 (538)
Q Consensus 536 ~~ 537 (538)
+.
T Consensus 475 ~~ 476 (567)
T 1qks_A 475 IK 476 (567)
T ss_dssp GG
T ss_pred CC
Confidence 75
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-13 Score=130.76 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=70.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++..... ..+.+||+.|||||++ .+ ..++.++|+|||||++|+|++|+ |
T Consensus 143 g~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~p 202 (318)
T 1fot_A 143 GHIKITDFGFAKYVPDV-----TYTLCGTPDYIAPEVV------ST---------KPYNKSIDWWSFGILIYEMLAGYTP 202 (318)
T ss_dssp SCEEECCCSSCEECSSC-----BCCCCSCTTTCCHHHH------TT---------CCBCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeecCcceecCCc-----cccccCCccccCHhHh------cC---------CCCCcccchhhhHHHHHHHHhCCCC
Confidence 467888 667766543 3468999999999999 43 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|.......+. ..+... ....+ .....+.+++.+||..+|.+|+.
T Consensus 203 f~~~~~~~~~---------------------~~i~~~-~~~~p~~~~~~~~~li~~lL~~dp~~R~~ 247 (318)
T 1fot_A 203 FYDSNTMKTY---------------------EKILNA-ELRFPPFFNEDVKDLLSRLITRDLSQRLG 247 (318)
T ss_dssp TCCSSHHHHH---------------------HHHHHC-CCCCCTTSCHHHHHHHHHHTCSCTTTCTT
T ss_pred CCCCCHHHHH---------------------HHHHhC-CCCCCCCCCHHHHHHHHHHhccCHHHcCC
Confidence 9765433111 000000 00000 11123778999999999999994
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-14 Score=140.35 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=71.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... .++.+||+.|||||++ .+ ..++.++|||||||+||+|++|+
T Consensus 200 ~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~ 261 (400)
T 1nxk_A 200 NAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEVL------GP---------EKYDKSCDMWSLGVIMYILLCGYP 261 (400)
T ss_dssp TCCEEECCCTTCEECC--------------CTTCCGGGS------CC---------CCSSSHHHHHHHHHHHHHHHHSSC
T ss_pred CccEEEEecccccccCCCCc---cccCCCCCCccCHhhc------CC---------CCCCCcccHHHHHHHHHHHHhCCC
Confidence 4678998 66776654322 5578999999999998 43 67889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
||.......+. ..............+..........+.+++.+||..+|.+||++.++.++
T Consensus 262 pf~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 262 PFYSNHGLAIS-------------PGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp SCCCCTTCSSC-------------CSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CCCCCcccccc-------------HHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 99865332110 00000000000000000011122347889999999999999998887763
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-14 Score=136.90 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=66.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++...... .....+||+.|||||++ .+ ..+++++|||||||+||+|++|+
T Consensus 187 ~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~ 248 (349)
T 2w4o_A 187 DAPLKIADFGLSKIVEHQV---LMKTVCGTPGYCAPEIL------RG---------CAYGPEVDMWSVGIITYILLCGFE 248 (349)
T ss_dssp TCCEEECCCC-------------------CGGGSCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEccCccccccCccc---ccccccCCCCccCHHHh------cC---------CCCCcccchHHHHHHHHHHHhCCC
Confidence 4567888 5666655432 24568999999999999 44 56789999999999999999999
Q ss_pred ccchhhhhh-ee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDY-IR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||....... +. .+. ... .....+ ........+.+++.+||..+|.+||++.++.+
T Consensus 249 pf~~~~~~~~~~~~i~--~~~----~~~~~~------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 249 PFYDERGDQFMFRRIL--NCE----YYFISP------------WWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp TTCCTTCHHHHHHHHH--TTC----CCCCTT------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCcccHHHHHHHH--hCC----CccCCc------------hhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 997643221 11 000 000 000000 00112224778999999999999999888765
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.7e-14 Score=137.26 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=77.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++.+.+... ....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 226 ~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~p 287 (373)
T 2x4f_A 226 KQIKIIDFGLARRYKPREK---LKVNFGTPEFLAPEVV------NY---------DFVSFPTDMWSVGVIAYMLLSGLSP 287 (373)
T ss_dssp TEEEECCCSSCEECCTTCB---CCCCCSSCTTCCHHHH------TT---------CBCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred CcEEEEeCCCceecCCccc---cccccCCCcEeChhhc------cC---------CCCCcHHhHHHHHHHHHHHHhCCCC
Confidence 357888 67777665543 4457899999999998 43 56788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.....+. .+. ... +.. +..........+.+++.+||..+|.+||++.++.+
T Consensus 288 f~~~~~~~~~~~i~-~~~------~~~-----------~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 288 FLGDNDAETLNNIL-ACR------WDL-----------EDEEFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp TCCSSHHHHHHHHH-HTC------CCS-----------CSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCHHHHHHHHH-hcc------CCC-----------ChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 9875433111 000 000 000 00001112234788999999999999999888765
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-13 Score=128.26 Aligned_cols=115 Identities=22% Similarity=0.297 Sum_probs=71.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++...... .....||+.|||||++ .+ ..+++++||||||+++|+|++|+
T Consensus 152 ~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~~g~~ 212 (271)
T 3dtc_A 152 NKILKITDFGLAREWHRTT----KMSAAGAYAWMAPEVI------RA---------SMFSKGSDVWSYGVLLWELLTGEV 212 (271)
T ss_dssp SCCEEECCCCC-----------------CCGGGSCHHHH------HH---------CCCSHHHHHHHHHHHHHHHHHCCC
T ss_pred CcceEEccCCccccccccc----ccCCCCccceeCHHHh------cc---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 5668888 5556555443 3357899999999998 32 45778999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||......... ..... . .... ........+.+++.+||..+|.+||++.++.+.+.+
T Consensus 213 p~~~~~~~~~~~~~~~~-~------~~~~-------------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 213 PFRGIDGLAVAYGVAMN-K------LALP-------------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp TTTTSCHHHHHHHHHTS-C------CCCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHhhhcC-C------CCCC-------------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 99875333111 00000 0 0000 000111237789999999999999999998887654
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=132.82 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=75.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
.-+|+. |+++.+.............||+.|||||++ .+ ..+++++|||||||+||+|++ |+
T Consensus 154 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~~g~~ 218 (327)
T 3lzb_A 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI------LH---------RIYTHQSDVWSYGVTVWELMTFGSK 218 (327)
T ss_dssp TEEEECCTTC----------------CCCGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEccCcceeEccCccccccccCCCccccccCHHHH------cC---------CCCChHHHHHHHHHHHHHHHHCCCC
Confidence 457888 667776655444445567889999999999 32 557789999999999999999 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
||.+.....+........ .. .........+.+++.+||..+|.+||++.++.+.+.++..
T Consensus 219 p~~~~~~~~~~~~~~~~~-----~~---------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 219 PYDGIPASEISSILEKGE-----RL---------------PQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTTTCCGGGHHHHHHTTC-----CC---------------CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCC-----CC---------------CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 998754442110000000 00 0001122247789999999999999999999998888764
Q ss_pred C
Q 009274 168 K 168 (538)
Q Consensus 168 ~ 168 (538)
.
T Consensus 279 ~ 279 (327)
T 3lzb_A 279 D 279 (327)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=134.78 Aligned_cols=119 Identities=17% Similarity=0.275 Sum_probs=77.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... ....+||+.|||||++...... ....++.++|||||||+||+|++|+ |
T Consensus 237 ~~ikl~DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~---------~~~~~~~~~Di~slG~il~ell~g~~p 304 (365)
T 2y7j_A 237 MQIRLSDFGFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDE---------THPGYGKEVDLWACGVILFTLLAGSPP 304 (365)
T ss_dssp CCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCT---------TSCCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEecCcccccCCCcc---cccCCCCCCccChhhccccccc---------cCcCCCchhhHHhHHHHHHHHHHCCCC
Confidence 456787 56676665432 4568999999999998332211 1245788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+. ........ .........+.+++.+||..+|.+||++.++.+
T Consensus 305 f~~~~~~~~~~~i~----------~~~~~~~~--------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 305 FWHRRQILMLRMIM----------EGQYQFSS--------PEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp SCCSSHHHHHHHHH----------HTCCCCCH--------HHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHHH----------hCCCCCCC--------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9765333111 000 00000000 001122234788999999999999999888765
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-14 Score=134.34 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=72.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+..... .....||+.|||||++ .+ ..+++++|||||||+||+|++|+
T Consensus 170 ~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~ll~g~~ 231 (327)
T 3lm5_A 170 LGDIKIVDFGMSRKIGHACE---LREIMGTPEYLAPEIL------NY---------DPITTATDMWNIGIIAYMLLTHTS 231 (327)
T ss_dssp BCCEEECCGGGCEEC------------CCCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeeCccccccCCccc---cccccCCcCccCCeee------cC---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 4568888 56666654432 4568999999999999 43 56789999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||......... .+... . .. .+..........+.+++.+||..+|.+||++.++.+
T Consensus 232 pf~~~~~~~~~~~i~~~-~-----~~------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 232 PFVGEDNQETYLNISQV-N-----VD------------YSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp SSCCSSHHHHHHHHHHT-C-----CC------------CCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCCCchHHHHHHHhc-c-----cc------------cCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 99775433111 00000 0 00 000000111223778999999999999999887654
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=131.88 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=70.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++....... ..++.+||+.|||||++ .+ ..++.++|+|||||+||||++|+ |
T Consensus 147 g~~kL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~p 209 (345)
T 3a8x_A 147 GHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL------RG---------EDYGFSVDWWALGVLMFEMMAGRSP 209 (345)
T ss_dssp SCEEECCGGGCBCSCCTTC--CBCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEEeccccccccCCCC--cccccCCCccccCcccc------CC---------CCCChHHhHHHHHHHHHHHHhCCCC
Confidence 457888 66665332222 15578999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|......... ...........+... ....+ .....+.+++.+||..+|.+||++
T Consensus 210 f~~~~~~~~~------------~~~~~~~~~~~i~~~-~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 210 FDIVGSSDNP------------DQNTEDYLFQVILEK-QIRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp TTTTTC-------------------CHHHHHHHHHHC-CCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred cCCccccccc------------ccccHHHHHHHHHcC-CCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 9753111000 000000000000000 00011 112347889999999999999986
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=139.80 Aligned_cols=65 Identities=17% Similarity=0.357 Sum_probs=46.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+...... ..+..+||+.|||||++ .| ..++.++|||||||+||+|++|+
T Consensus 200 ~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~ell~g~~ 261 (464)
T 3ttj_A 200 DCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMVRHKI 261 (464)
T ss_dssp TSCEEECCCCCC-----CC---CC----CCCTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEEEEeeeecCCCc---ccCCCcccccccCHHHH------cC---------CCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3467888 6777665432 25679999999999999 44 56889999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||.+..
T Consensus 262 pF~g~~ 267 (464)
T 3ttj_A 262 LFPGRD 267 (464)
T ss_dssp SSCCSS
T ss_pred CCCCCC
Confidence 998754
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-13 Score=130.09 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=71.1
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhhc
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (538)
..+||+.|||||++ .+ ..+++++|||||||+||+|++|. ||......... ..
T Consensus 181 ~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~------------~~ 233 (310)
T 3s95_A 181 TVVGNPYWMAPEMI------NG---------RSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD------------FG 233 (310)
T ss_dssp CCCSCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT------------SS
T ss_pred ccCCCcceeCHHHh------cC---------CCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH------------Hh
Confidence 57899999999999 44 56789999999999999999999 88765333111 00
Q ss_pred chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
. ....... ..........+.+++.+||+.+|.+||+..++.+.+..+.
T Consensus 234 ~---~~~~~~~---~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~ 281 (310)
T 3s95_A 234 L---NVRGFLD---RYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLR 281 (310)
T ss_dssp B---CHHHHHH---HTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred h---hhhcccc---ccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 0 0011010 0011223345889999999999999999999888777654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-10 Score=110.25 Aligned_cols=230 Identities=11% Similarity=0.078 Sum_probs=148.7
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
..|.+++|+ +..++..+.++.++.| .++....+..+...+.+++|++++ .+++++..++.|.+||..++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEE
Confidence 345666776 4556666778899999 456677777787888999998855 4777888899999999876542211
Q ss_pred eeeecccCCceeeeEEEEeecCCEEEEeeCC----CcEEEEECCCCceeEEec--CCCCCeEEEEEe-CC-EEEEEec--
Q 009274 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGD----RTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC-NG-VLYSGSR-- 400 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~~-~l~s~s~-- 400 (538)
.. ... ......+++++++++++...+ +.|.+||..+++....+. .+...+.+++++ ++ ++++...
T Consensus 82 ~~---~~~--~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 82 FV---SHK--ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EE---CSS--SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred ee---CCC--CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 10 111 112244677888877776666 689999998876553332 345678999998 44 4444432
Q ss_pred ----CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCCc---ceeee--------cccc
Q 009274 401 ----DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK---FMKSM--------QTHK 464 (538)
Q Consensus 401 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~---~~~~~--------~~h~ 464 (538)
.+.|..+|..+++........ .. ...++++|+++.++.+ +.++.|.+||... ....+ .++
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~-~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~- 232 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQNI--SV-ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH- 232 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEEEE--SS-EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred ccCCCceEEEEeCCCCEEEEeecCC--Cc-ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence 355667776655543322211 12 2336899999866544 5678999999632 22211 112
Q ss_pred ceEEEEEe--CCCEEEEEeCCCeEEEEecCCCe
Q 009274 465 GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (538)
Q Consensus 465 ~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~ 495 (538)
.....+.+ +|+++++...++.|.+||..+..
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~ 265 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP 265 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCCCCE
Confidence 34555665 78888887788999999986443
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=130.19 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=75.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++.+.+... .....||+.|+|||++ .| .+++++||||||+++|+|++|+
T Consensus 145 ~~~~~l~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~------~~----------~~~~~~Di~slG~~l~~l~~g~~ 205 (277)
T 3f3z_A 145 DSPLKLIDFGLAARFKPGKM---MRTKVGTPYYVSPQVL------EG----------LYGPECDEWSAGVMMYVLLCGYP 205 (277)
T ss_dssp TCCEEECCCTTCEECCTTSC---BCCCCSCTTTCCHHHH------TT----------CBCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEecccceeccCccc---hhccCCCCCccChHHh------cc----------cCCchhhehhHHHHHHHHHHCCC
Confidence 3567888 55666554432 4568899999999998 33 4789999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.......+. .+. ......... ........+.+++.+||+.+|.+||++.++.+
T Consensus 206 p~~~~~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 206 PFSAPTDSEVMLKIR----------EGTFTFPEK--------DWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp SSCCSSHHHHHHHHH----------HCCCCCCHH--------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHH----------hCCCCCCch--------hhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99875443111 000 000000000 01112234788999999999999999887664
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-14 Score=133.14 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=69.2
Q ss_pred eeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+-.|+. |+++.+....... .....+||+.|||||++ .+ ..+++++|||||||++|+|+||+
T Consensus 153 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~ll~g~~ 217 (311)
T 3ork_A 153 NAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA------RG---------DSVDARSDVYSLGCVLYEVLTGEP 217 (311)
T ss_dssp SCEEECCCSCC------------------CCTTCCHHHH------HT---------CCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEeeccCcccccccccccccccccCcCcccCCHHHh------cC---------CCCCchHhHHHHHHHHHHHHhCCC
Confidence 457888 5666555432221 13357899999999999 44 56788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH-HHHHHh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW-KCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~-~~l~~l 165 (538)
||.+.....+.... ......... .........+.+++.+||+.+|.+||+..+.. ..+.+.
T Consensus 218 pf~~~~~~~~~~~~---------~~~~~~~~~--------~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 218 PFTGDSPVSVAYQH---------VREDPIPPS--------ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp SCCCSSHHHHHHHH---------HHCCCCCHH--------HHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHH---------hcCCCCCcc--------cccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 99876444211000 000000000 00111223478899999999999999876544 334443
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-13 Score=131.77 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=82.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+.+|+. |+++.+.............||+.|||||++ .+ ..+++++|||||||+||+|+| |.
T Consensus 209 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~t~g~~ 273 (344)
T 1rjb_A 209 KVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL------FE---------GIYTIKSDVWSYGILLWEIFSLGVN 273 (344)
T ss_dssp TEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CcEEeCCCccCcccccCccceeccCccCccCccCHHHh------cc---------CCCChhHhHHHHHHHHHHHHcCCCC
Confidence 467888 666666555433334568899999999998 22 457789999999999999998 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh-hhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+....... . ......... ........+.+++.+||..+|.+||++.++.+.+..++
T Consensus 274 p~~~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 333 (344)
T 1rjb_A 274 PYPGIPVDANF-------------Y-------KLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQL 333 (344)
T ss_dssp SSTTCCCSHHH-------------H-------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred CcccCCcHHHH-------------H-------HHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 99875322100 0 000000000 00111234788999999999999999999999888876
Q ss_pred c
Q 009274 167 I 167 (538)
Q Consensus 167 ~ 167 (538)
.
T Consensus 334 ~ 334 (344)
T 1rjb_A 334 A 334 (344)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.6e-13 Score=127.34 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=79.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...............||+.|||||++ .| .+++++||||||+++|+|++|. |
T Consensus 170 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~------~~----------~~~~~~Dv~slG~il~~l~~g~~p 233 (307)
T 2nru_A 170 FTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEAL------RG----------EITPKSDIYSFGVVLLEIITGLPA 233 (307)
T ss_dssp CCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHH------TT----------EECTHHHHHHHHHHHHHHHHCCCS
T ss_pred CcEEEeecccccccccccccccccccCCCcCcCChHHh------cC----------CCCccchhHHHHHHHHHHHHCCCC
Confidence 457888 555555443322224457899999999998 33 4678999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhc----CccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFG----SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
|......... .+... ....... .......... .....+.+++.+||..+|.+||++.++.+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~ 302 (307)
T 2nru_A 234 VDEHREPQLLLDIKEE-------IEDEEKT----IEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ 302 (307)
T ss_dssp BCTTBSSSBTTHHHHH-------HHTTSCC----HHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred cccCcchHHHHHHHHH-------hhhhhhh----hhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 9875433111 00000 0000000 0000000000 00112778999999999999999999998887
Q ss_pred Hhh
Q 009274 164 ELI 166 (538)
Q Consensus 164 ~l~ 166 (538)
++.
T Consensus 303 ~l~ 305 (307)
T 2nru_A 303 EMT 305 (307)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-13 Score=140.09 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=73.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+...... ...++||+.|||||++ .+ ..++.++|+|||||+||||+||+
T Consensus 325 ~g~vkL~DFGla~~~~~~~~~--~~~~~GT~~Y~APE~l------~~---------~~~~~~~DiwSlGvilyelltG~~ 387 (543)
T 3c4z_A 325 DGNVRISDLGLAVELKAGQTK--TKGYAGTPGFMAPELL------LG---------EEYDFSVDYFALGVTLYEMIAARG 387 (543)
T ss_dssp TSCEEECCCTTCEECCTTCCC--BCCCCSCTTTSCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeecceeeeccCCCcc--cccccCCccccChhhh------cC---------CCCChHHhcCcchHHHHHHHhCCC
Confidence 3567888 677776654322 3457999999999999 44 56889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
||.+...... .. .....+..............+.+++.+||..+|.+||+..
T Consensus 388 PF~~~~~~~~-------------~~----~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 388 PFRARGEKVE-------------NK----ELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp SSCCTTCCCC-------------HH----HHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred CCCCCccchh-------------HH----HHHHHHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCc
Confidence 9987532200 00 0000010000000011223478899999999999999753
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-13 Score=130.61 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=76.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |++....+... .....||+.|||||++ .+ ..++.++||||||+++|+|++|+ |
T Consensus 145 ~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~~g~~p 206 (284)
T 3kk8_A 145 AAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVL------KK---------DPYSKPVDIWACGVILYILLVGYPP 206 (284)
T ss_dssp CCEEECCCTTCEECCSSCB---CCCSCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEeeceeeEEcccCcc---ccCCCCCcCCcCchhh------cC---------CCCCcccchHHHHHHHHHHHHCCCC
Confidence 447888 55665554432 4568999999999999 44 56788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+... ... .+..........+.+++.+||..+|.+||++.++.+
T Consensus 207 f~~~~~~~~~~~~~~~-------~~~-----------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 207 FWDEDQHRLYAQIKAG-------AYD-----------YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp SCCSSHHHHHHHHHHT-------CCC-----------CCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCchhHHHHHHHhc-------ccc-----------CCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 9765433111 00000 000 000001112234778999999999999999888765
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=141.02 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=77.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
....|+. |+|+....... ....+||+.|||||++ . ..+++++|||||||++|+|++|+
T Consensus 175 ~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l------~----------~~~~~~~DiwslG~il~~ll~g~~ 235 (494)
T 3lij_A 175 DALIKIVDFGLSAVFENQKK---MKERLGTAYYIAPEVL------R----------KKYDEKCDVWSIGVILFILLAGYP 235 (494)
T ss_dssp TCCEEECCCTTCEECBTTBC---BCCCCSCTTTCCHHHH------T----------TCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCeECCCCcc---ccccCCCcCeeCHHHH------c----------ccCCCchhHHHHHHHHHHHHhCCC
Confidence 3457888 66776665432 5578999999999998 2 35789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+........ .....+ ........+.+++.+||..+|.+||++.++.+
T Consensus 236 pf~~~~~~~~~~~i~~~~-----~~~~~~------------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 236 PFGGQTDQEILRKVEKGK-----YTFDSP------------EWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp SSCCSSHHHHHHHHHHTC-----CCCCSG------------GGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCC-----CCCCch------------hcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 998765442220000000 000000 01112234778999999999999999887664
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-13 Score=129.59 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=82.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++..|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||++|+|+| |.
T Consensus 184 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~t~g~ 248 (316)
T 2xir_A 184 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI------FD---------RVYTIQSDVWSFGVLLWEIFSLGA 248 (316)
T ss_dssp GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEECCCccccccccCccceeccCCCcceeecCchhh------cc---------ccccchhHHHHHHHHHHHHHhCCC
Confidence 3457888 566666544333334468899999999998 22 457789999999999999999 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+....... ........... .......+.+++.+||+.+|.+||++.++.+.+..+
T Consensus 249 ~p~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 308 (316)
T 2xir_A 249 SPYPGVKIDEEF--------------------CRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 308 (316)
T ss_dssp CSSTTCCCSHHH--------------------HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCcccchhHHH--------------------HHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 99764322000 00000000000 011223478899999999999999999999988887
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 309 ~ 309 (316)
T 2xir_A 309 L 309 (316)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-13 Score=130.41 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=81.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+...|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||+||+|+| |.
T Consensus 200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~t~g~ 264 (333)
T 2i1m_A 200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESI------FD---------CVYTVQSDVWSYGILLWEIFSLGL 264 (333)
T ss_dssp GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCeEEECccccccccccccceeecCCCCCCccccCHHHh------cc---------CCCChHHHHHHHHHHHHHHHcCCC
Confidence 3467888 566666554433334467889999999998 22 457789999999999999999 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+....... ........... .......+.+++.+||+.+|.+||++.++.+.+..+
T Consensus 265 ~p~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 324 (333)
T 2i1m_A 265 NPYPGILVNSKF--------------------YKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324 (333)
T ss_dssp CSSTTCCSSHHH--------------------HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCcccchhHHH--------------------HHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence 99864322000 00000000000 011122478899999999999999999998888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 325 ~ 325 (333)
T 2i1m_A 325 A 325 (333)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-13 Score=129.27 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=81.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++...............||+.|||||++ .+ ..+++++|||||||+||+|+| |+
T Consensus 182 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~~ 246 (313)
T 1t46_A 182 RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI------FN---------CVYTFESDVWSYGIFLWELFSLGSS 246 (313)
T ss_dssp TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEccccccccccccccceeccCCCCcceeeChHHh------cC---------CCCChHHHHHHHHHHHHHHHhCCCC
Confidence 457888 566666655433334467889999999998 22 457789999999999999999 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||......... ........... .......+.+++.+||..+|.+||++.++.+.+.+++
T Consensus 247 p~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 306 (313)
T 1t46_A 247 PYPGMPVDSKF--------------------YKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (313)
T ss_dssp SSTTCCSSHHH--------------------HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCcccchhHH--------------------HHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 99765322000 00000000000 0112234788999999999999999999999888876
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-14 Score=137.62 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=76.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... ....+||+.|||||++ .+ ..++.++|||||||+||+|++|. |
T Consensus 188 ~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltg~~P 249 (387)
T 1kob_A 188 SSVKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIV------DR---------EPVGFYTDMWAIGVLGYVLLSGLSP 249 (387)
T ss_dssp CCEEECCCTTCEECCTTSC---EEEECSSGGGCCHHHH------TT---------CCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred CceEEEecccceecCCCcc---eeeeccCCCccCchhc------cC---------CCCCCcccEeeHhHHHHHHHhCCCC
Confidence 457888 67777665432 4457899999999999 43 56788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.....+. .+.. .. +.. +..........+.+++.+||..+|.+||++.++.+
T Consensus 250 f~~~~~~~~~~~i~~-~~------~~~-----------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 250 FAGEDDLETLQNVKR-CD------WEF-----------DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp SCCSSHHHHHHHHHH-CC------CCC-----------CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCCCHHHHHHHHHh-CC------CCC-----------CccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 9875433111 0000 00 000 00000111224788999999999999999887765
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-13 Score=134.46 Aligned_cols=49 Identities=31% Similarity=0.637 Sum_probs=40.0
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhh
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELI 94 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~ 94 (538)
.++.+||+.|||||++ .| ...++.++|||||||+||||++|+ ||.+...
T Consensus 187 ~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~ 236 (388)
T 3oz6_A 187 LTDYVATRWYRAPEIL------LG--------STKYTKGIDMWSLGCILGEILCGKPIFPGSST 236 (388)
T ss_dssp ---CCCGGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred ccCCcccCCcCCHHHh------cC--------CCCCCChhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 5678999999999999 33 246789999999999999999999 9987543
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-13 Score=133.65 Aligned_cols=120 Identities=15% Similarity=0.188 Sum_probs=83.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++.+.............||+.|||||++ .+ ..++.++|||||||+||+|++ |.
T Consensus 227 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ellt~g~ 291 (382)
T 3tt0_A 227 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL------FD---------RIYTHQSDVWSFGVLLWEIFTLGG 291 (382)
T ss_dssp TCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHH------HS---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEcccCcccccccccccccccCCCCCcceeCHHHh------cC---------CCCCchhHHHHHHHHHHHHHhCCC
Confidence 3568888 667766554332234567899999999999 43 567899999999999999999 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+... +....... .......+.+++.+||+.+|.+||++.++.+.+.++
T Consensus 292 ~p~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 350 (382)
T 3tt0_A 292 SPYPGVPVEELFKL---------------------LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350 (382)
T ss_dssp CSSTTCCHHHHHHH---------------------HHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH---------------------HHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 9987544311100 00000000 011223478899999999999999999999988887
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 351 ~ 351 (382)
T 3tt0_A 351 V 351 (382)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-13 Score=133.44 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=76.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++...+... ....+||+.|||||++ .| ....++++|||||||+||+|++|+ |
T Consensus 145 ~~~kl~DFG~s~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~P 207 (336)
T 3h4j_B 145 LNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVI------NG--------KLYAGPEVDVWSCGIVLYVMLVGRLP 207 (336)
T ss_dssp CCEEECCSSCTBTTTTSBT---TCCCTTSTTTSCGGGS------CC--------SGGGCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEEeccceeccCCcc---cccccCCcCcCCHHHH------cC--------CCCCCCccchhHHHHHHHHHHhCCCC
Confidence 457888 66776655432 5678999999999998 43 122368999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|.......+.... ... ....+. .....+.+++.+||..+|.+||++.++.+.
T Consensus 208 f~~~~~~~~~~~i-~~~-----~~~~p~---------------~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 208 FDDEFIPNLFKKV-NSC-----VYVMPD---------------FLSPGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp SBCSSSTTCBCCC-CSS-----CCCCCT---------------TSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred CCCccHHHHHHHH-HcC-----CCCCcc---------------cCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 9886554322000 000 000010 011236789999999999999999887653
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-13 Score=129.92 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=75.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+...... .....||+.|||||++ .+ ..+++++|||||||+||+|++|+ |
T Consensus 178 ~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~el~~g~~p 240 (321)
T 2c30_A 178 GRVKLSDFGFCAQISKDVPK--RKSLVGTPYWMAPEVI------SR---------SLYATEVDIWSLGIMVIEMVDGEPP 240 (321)
T ss_dssp CCEEECCCTTCEECCSSSCC--BCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CcEEEeeeeeeeecccCccc--cccccCCccccCHhhh------cC---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 556666543221 4568999999999999 43 56788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh---hcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK---FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ..+....... .......+.+++.+||..+|.+||++.++.+
T Consensus 241 f~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 241 YFSDSPVQAM---------------------KRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp TTTSCHHHHH---------------------HHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCCHHHHH---------------------HHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9765433111 0000000000 0011223778999999999999999887655
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-13 Score=130.19 Aligned_cols=116 Identities=23% Similarity=0.271 Sum_probs=76.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++..... .....||+.|+|||++ .+ ....+++++|||||||++|+|++|+ ||
T Consensus 167 ~~kl~Dfg~~~~~~~~-----~~~~~g~~~y~aPE~~------~~-------~~~~~~~~~Di~slG~~l~~l~~g~~pf 228 (287)
T 4f0f_A 167 CAKVADFGLSQQSVHS-----VSGLLGNFQWMAPETI------GA-------EEESYTEKADTYSFAMILYTILTGEGPF 228 (287)
T ss_dssp CEEECCCTTCBCCSSC-----EECCCCCCTTSCGGGS------SC-------SSCEECHHHHHHHHHHHHHHHHHSSCTT
T ss_pred eEEeCCCCcccccccc-----ccccCCCccccCchhh------cc-------CCCCcCchhhHHHHHHHHHHHHcCCCCC
Confidence 37888 556554433 4468999999999987 32 2355778999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
......... .. ............ ......+.+++.+||+.+|.+||++.++.+.+.+
T Consensus 229 ~~~~~~~~~------------~~------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 229 DEYSYGKIK------------FI------NMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp TTCCCCHHH------------HH------HHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred ccccccHHH------------HH------HHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 764332110 00 000000000000 1112247889999999999999999998887654
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-13 Score=128.16 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++........ .+..+||+.|||||++ .| ...++.++|||||||++|+|++|+ |
T Consensus 156 ~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~p 219 (311)
T 3niz_A 156 GALKLADFGLARAFGIPVRS--YTHEVVTLWYRAPDVL------MG--------SKKYSTSVDIWSIGCIFAEMITGKPL 219 (311)
T ss_dssp CCEEECCCTTCEETTSCCC-----CCCCCCTTCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEccCcCceecCCCccc--ccCCcccCCcCCHHHh------cC--------CCCCCchHHhHHHHHHHHHHHhCCCC
Confidence 457888 566665533222 4567999999999998 33 245788999999999999999999 9
Q ss_pred cchhhhhhee-e----ccccccCcchhhcchhhHHHHHHHH----H-HHhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 89 FTKELIDYIR-C----VSTKASDDNIACLGMYMAWMEKVTY----L-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 89 f~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
|.+....... . +..... ...........+...... . .....+....++.+++.+||..+|.+||++.++
T Consensus 220 f~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 298 (311)
T 3niz_A 220 FPGVTDDDQLPKIFSILGTPNP-REWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDA 298 (311)
T ss_dssp CCCSSTTTHHHHHHHHHCCCCT-TTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred CCCCChHHHHHHHHHHHCCCCh-HHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 9864333111 0 000000 000000000000000000 0 000001112347789999999999999998876
Q ss_pred HH
Q 009274 159 WK 160 (538)
Q Consensus 159 ~~ 160 (538)
.+
T Consensus 299 l~ 300 (311)
T 3niz_A 299 MN 300 (311)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-13 Score=132.59 Aligned_cols=117 Identities=16% Similarity=0.076 Sum_probs=72.9
Q ss_pred eeeec--cccccccccch--hhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 13 VAKVG--CVGSRICDKEV--GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
.+|+. |+++.+..... ........||+.|||||++ .+ ....+++++|||||||+||+|++|+
T Consensus 208 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~-------~~~~~~~~~DiwslG~il~el~~g~~ 274 (345)
T 3hko_A 208 EIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL------NT-------TNESYGPKCDAWSAGVLLHLLLMGAV 274 (345)
T ss_dssp CEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH------TC-------SSSCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred eEEEeeccccccccccCccccccccccCCCccccCchhh------cc-------CCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 67888 56665543221 1124568899999999999 33 2356788999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+....... .+.. .. .....+ ........+.+++.+||+.+|.+||++.++.+
T Consensus 275 pf~~~~~~~~~~~~~~-~~-----~~~~~~------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 275 PFPGVNDADTISQVLN-KK-----LCFENP------------NYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp SSCCSSHHHHHHHHHH-CC-----CCTTSG------------GGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCCCCChHHHHHHHHh-cc-----cccCCc------------ccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 99765333111 0000 00 000000 00011224778999999999999999888765
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-13 Score=131.14 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=78.7
Q ss_pred eeeeec--cccccccccc------hhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhh
Q 009274 12 SVAKVG--CVGSRICDKE------VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSL 83 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~------~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~l 83 (538)
+.+|+. |+++.+.... ........+||+.|||||++ .|.. .......+++++|||||||+||||
T Consensus 157 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~~--~~~~~~~~~~~~DiwslG~il~el 228 (336)
T 3g2f_A 157 GTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVL------EGAV--NLRDXESALKQVDMYALGLIYWEI 228 (336)
T ss_dssp SCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHH------TTCC--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEeeccceeecccccccCccccccccccCCCccceeCchhh------cCCc--ccccccccccccchHHHHHHHHHH
Confidence 467888 5666554321 11123457899999999999 3310 000113566889999999999999
Q ss_pred hhcC-ccchh-hhhhee-eccccccCcchhhcchhhHHHHHHHHHHH-hhhcCcc-----------chHHHHHhhhhccC
Q 009274 84 LIGE-QFTKE-LIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLE-NKFGSEF-----------VSLQLMFCQCLNFD 148 (538)
Q Consensus 84 ltg~-pf~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~l~~~~~~~l~~~ 148 (538)
++|. ||... ...... .... .....+.... ...... ......+ ..+.+++.+||..+
T Consensus 229 l~g~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d 299 (336)
T 3g2f_A 229 FMRCTDLFPGESVPEYQMAFQT--------EVGNHPTFED-MQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQD 299 (336)
T ss_dssp HTTBGGGSTTSCCCCCCCTTHH--------HHCSSCCHHH-HHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSS
T ss_pred HhcCCcCCCccchhHHHHhhhc--------ccCCCchHHH-HHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCC
Confidence 9998 65432 222110 0000 0000000000 111100 0000111 13888999999999
Q ss_pred CCCCcchhhHHHHHHHhh
Q 009274 149 PGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 149 p~~r~~~~~~~~~l~~l~ 166 (538)
|.+||++.++.+.+..++
T Consensus 300 P~~Rps~~e~l~~L~~ll 317 (336)
T 3g2f_A 300 AEARLTAQXAEERMAELM 317 (336)
T ss_dssp GGGSCCHHHHHHHHHHHH
T ss_pred hhhCcchHHHHHHHHHHH
Confidence 999999999999888876
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-13 Score=130.79 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=81.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++...............||+.|||||++ .+ ..+++++|||||||++|+|+| |.
T Consensus 187 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~t~g~~ 251 (314)
T 2ivs_A 187 RKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESL------FD---------HIYTTQSDVWSFGVLLWEIVTLGGN 251 (314)
T ss_dssp TEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEccccccccccccccceeccCCCCcccccChhhh------cC---------CCcCchhhHHHHHHHHHHHHhCCCC
Confidence 357888 566666544333224457889999999998 22 457789999999999999999 98
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. .+..... . .........+.+++.+||+.+|.+||++.++.+.+.+++
T Consensus 252 p~~~~~~~~~~~~~~~~~~------~---------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 310 (314)
T 2ivs_A 252 PYPGIPPERLFNLLKTGHR------M---------------ERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMM 310 (314)
T ss_dssp SSTTCCGGGHHHHHHTTCC------C---------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhhcCCc------C---------------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 99875444211 0000000 0 000111234788999999999999999999999888875
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-13 Score=136.16 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=76.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+...... ...+.+||+.|||||++.... ....++.++|||||||+||||++|+
T Consensus 204 ~g~ikL~DFG~a~~~~~~~~~-~~~~~~gt~~Y~APE~l~~~~-----------~~~~~~~~~DiwSlGvilyell~G~~ 271 (410)
T 3v8s_A 204 SGHLKLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEVLKSQG-----------GDGYYGRECDWWSVGVFLYEMLVGDT 271 (410)
T ss_dssp TSCEEECCCTTCEECCTTSEE-ECCSCCSCGGGCCHHHHHTTT-----------TTCEEETHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeccceeEeeccCCcc-cccCCcCCccccCHHHhhccC-----------CCcCCCCcceEecchHHHHHHHhCCC
Confidence 3467888 667766544321 134689999999999992111 1133788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCC--CcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGC--RPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~--r~~~~~~~~ 160 (538)
||.+.+...+. ............+........+.+++.+||..+|.+ |+++.++.+
T Consensus 272 Pf~~~~~~~~~-----------------~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 272 PFYADSLVGTY-----------------SKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp TTCCSSHHHHH-----------------HHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred CCCCCChhhHH-----------------HHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 99876544111 000000000000001112234788999999988888 888877665
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-13 Score=132.16 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=78.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|+. |+|+.+.........+..+||+.|||||++ .| ..+++++|||||||+||||+||+
T Consensus 219 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~ 283 (365)
T 3e7e_A 219 SAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML------SN---------KPWNYQIDYFGVAATVYCMLFGTY 283 (365)
T ss_dssp CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH------TT---------CCBSTHHHHHHHHHHHHHHHHSSC
T ss_pred cCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh------cC---------CCCCccccHHHHHHHHHHHHhCCC
Confidence 5678998 677665433333336678999999999999 44 56889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc-hhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL-LTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~-~~~~~~~l~~l~ 166 (538)
||......... + . . ...... .++ .+.+++.+||+.+|.+|++ ..++.+.+..++
T Consensus 284 pf~~~~~~~~~-~----~-~---~~~~~~-----~~~-----------~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l 338 (365)
T 3e7e_A 284 MKVKNEGGECK-P----E-G---LFRRLP-----HLD-----------MWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVF 338 (365)
T ss_dssp CCEEEETTEEE-E----C-S---CCTTCS-----SHH-----------HHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHH
T ss_pred ccccCCCCcee-e----c-h---hccccC-----cHH-----------HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHH
Confidence 99765443111 0 0 0 000000 011 2567889999999999976 455666566554
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-13 Score=130.39 Aligned_cols=62 Identities=26% Similarity=0.550 Sum_probs=47.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++..... .+...||+.|||||++ .+ ..+++++|||||||+||+|+||+ |
T Consensus 175 ~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~p 234 (373)
T 1q8y_A 175 IQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVL------LG---------APWGCGADIWSTACLIFELITGDFL 234 (373)
T ss_dssp EEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHH------HT---------CCCCTHHHHHHHHHHHHHHHHSSCC
T ss_pred ceEEEcccccccccCCC-----CCCCCCCccccCcHHH------hC---------CCCCchHhHHHHHHHHHHHHhCCCC
Confidence 367888 566665543 3467999999999999 44 45789999999999999999999 9
Q ss_pred cchhh
Q 009274 89 FTKEL 93 (538)
Q Consensus 89 f~~~~ 93 (538)
|.+..
T Consensus 235 f~~~~ 239 (373)
T 1q8y_A 235 FEPDE 239 (373)
T ss_dssp C----
T ss_pred CCCCc
Confidence 98643
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-13 Score=132.16 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=74.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++.+............+||+.|||||++ .+ ....+.++|||||||+||+|++|+ |
T Consensus 142 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~p 207 (323)
T 3tki_A 142 DNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL------KR--------REFHAEPVDVWSCGIVLTAMLAGELP 207 (323)
T ss_dssp CCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHH------HC--------SSBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEEeeccceeccCCcccccCCCccCcCccCcHHh------cc--------CCCCCCcccHHHHHHHHHHHHhCCCC
Confidence 457888 566655433333335578999999999999 33 122367899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|................ ..... ........+.+++.+||..+|.+||++.++.+
T Consensus 208 f~~~~~~~~~~~~~~~~------~~~~~------------~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 208 WDQPSDSCQEYSDWKEK------KTYLN------------PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp CSSSCTTSHHHHHHHTT------CTTST------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCchHHHHHHHHhcc------cccCC------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 98653321000000000 00000 00111223678999999999999999887654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-09 Score=103.39 Aligned_cols=256 Identities=11% Similarity=-0.034 Sum_probs=160.2
Q ss_pred cEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc---------CCCcEEEEEccCCCCCcceeeecccCC--ce
Q 009274 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEKD--WR 341 (538)
Q Consensus 273 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~ 341 (538)
+|.++|..+++.+.++.....+ .++++|+++.++++.. .++.|.+||..+.+....+........ ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 7899999999998888765554 9999998776666543 467899999986554433322100000 01
Q ss_pred eeeEEEEeecCCEEEEeeC--CCcEEEEECCCCceeEE-ecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEE
Q 009274 342 YSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418 (538)
Q Consensus 342 ~~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 418 (538)
...-..++|||++|++++. ++.|.++| .+++.+.. +... ..+.-....+..+++.+.||.+.++|. +++.....
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~ 202 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG 202 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence 1124589999999998874 57899999 99998877 6432 222111122456777889999999999 88776433
Q ss_pred ec----CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc----eeeecc------------ccceEEEEEeCCCEEE
Q 009274 419 EE----DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----MKSMQT------------HKGSVFAVFLEGKWLF 478 (538)
Q Consensus 419 ~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~------------h~~~v~~~~~~~~~l~ 478 (538)
.. ...........+.+++..++..+.++.+.+.|.... ...+.. .......++++++.++
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 21 111111111345555555444457788999986421 122211 1111234556888777
Q ss_pred EEeC----------CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE--EEEEE-CCCeEEEEEcCC
Q 009274 479 TGGW----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGC-ADRTVKVYYYGK 538 (538)
Q Consensus 479 sgs~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~sg~-~dg~v~vw~~~~ 538 (538)
.+.. ++.|.++|+.+.+......... ......+.+|++ ++++. .++.|.+||..+
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 7653 3579999999998766554321 234455556664 66666 589999999753
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-13 Score=131.73 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=74.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+.+|+. |+++...............||+.|||||++ .+ ..++.++|||||||++|+|++ |+
T Consensus 174 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~~g~~ 238 (323)
T 3qup_A 174 MTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESL------AD---------NLYTVHSDVWAFGVTMWEIMTRGQT 238 (323)
T ss_dssp SCEEECCCCC-----------------CCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEeeccccccccccccccccccccCcccccCchhh------cC---------CCCCCccchhhHHHHHHHHHhCCCC
Confidence 467888 666666554433234457789999999998 32 457789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. .+.... .. .........+.+++.+||..+|.+||++.++.+.+.+++
T Consensus 239 p~~~~~~~~~~~~~~~~~------~~---------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l 297 (323)
T 3qup_A 239 PYAGIENAEIYNYLIGGN------RL---------------KQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENIL 297 (323)
T ss_dssp TTTTCCGGGHHHHHHTTC------CC---------------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CccccChHHHHHHHhcCC------CC---------------CCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 99875443111 000000 00 000111224778999999999999999999999988887
Q ss_pred cCCCc
Q 009274 167 IKPEF 171 (538)
Q Consensus 167 ~~~~~ 171 (538)
..+..
T Consensus 298 ~~~~~ 302 (323)
T 3qup_A 298 GHLSV 302 (323)
T ss_dssp HC---
T ss_pred HHhhh
Confidence 55443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-11 Score=118.57 Aligned_cols=229 Identities=5% Similarity=-0.120 Sum_probs=139.3
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEE-------------------EEEecCCCCEEEEE----
Q 009274 257 GLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA-------------------VVYVDEDQPLCISG---- 311 (538)
Q Consensus 257 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~~l~s~---- 311 (538)
.+.|+ +++|+.++.++.|++||+.+++.......+...... +.|+|++..+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 36788 889999999999999999988876666655543222 23445444332221
Q ss_pred cCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee-cCCEEEEeeCC------CcEEEEECCCCceeEEecCC-CC
Q 009274 312 DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGD------RTIKAWSLLDGTLSCTMSGH-KS 383 (538)
Q Consensus 312 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~h-~~ 383 (538)
..+..|++||+.++...... ... .......++| +++.++..+.+ ..|.+||+.+++........ ..
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~----~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 238 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH----QDT--AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGE 238 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE----EES--SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTE
T ss_pred CCcceEEEEECCCCcEEeec----cCC--cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCc
Confidence 35668999998765432211 111 1122447788 77766665543 46899998765543332311 23
Q ss_pred CeEEEEEe--CCEEEEEecC-----CcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEEEEe------------
Q 009274 384 AVSTLAVC--NGVLYSGSRD-----GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSH------------ 443 (538)
Q Consensus 384 ~v~~l~~~--~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~------------ 443 (538)
.+..++|+ ++.|+.++.+ +.|++||+.+++........ . .. ..|+| +++++++++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~-~~--~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--P-CS--HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--S-EE--EEEECSSSSEEEEEECCC---------
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--C-CC--CCccCCCCceEEEecCCcceeeccccc
Confidence 57888999 4456665543 44999999988764433221 2 22 57888 999888765
Q ss_pred ----CCCcEEEEeCCc-ceeeeccccce-----------EE--EEEeCCCEEEEEeC-CCeEEE--EecCCCee
Q 009274 444 ----ESGSIKVWRNDK-FMKSMQTHKGS-----------VF--AVFLEGKWLFTGGW-DKTVSV--QELAGDEF 496 (538)
Q Consensus 444 ----~dg~i~iwd~~~-~~~~~~~h~~~-----------v~--~~~~~~~~l~sgs~-dg~v~i--wd~~~~~~ 496 (538)
.++.|++||... ....+..+... +. +++++|+.|+.++. ++...+ +++.++..
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 347899999543 23444444431 22 34558988887765 455444 45555543
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-13 Score=134.37 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=45.2
Q ss_pred eeeeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 10 TKSVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
.++..|+. |+|+.+...... ......+||+.|||||++ .+ ...++.++|||||||+||+|++|
T Consensus 167 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ell~g 232 (405)
T 3rgf_A 167 ERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL------LG--------ARHYTKAIDIWAIGCIFAELLTS 232 (405)
T ss_dssp TTTCEEECCTTCCC----------------CCCTTCCHHHH------TT--------CCSCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhh------cC--------CCcccchhhhHHHHHHHHHHHhC
Confidence 34578898 677766543222 124468999999999999 43 13478899999999999999999
Q ss_pred C-ccchh
Q 009274 87 E-QFTKE 92 (538)
Q Consensus 87 ~-pf~~~ 92 (538)
+ ||.+.
T Consensus 233 ~~pf~~~ 239 (405)
T 3rgf_A 233 EPIFHCR 239 (405)
T ss_dssp SCTTCCC
T ss_pred CCCCCCc
Confidence 9 99754
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-13 Score=130.91 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=79.2
Q ss_pred eeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 12 SVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
...|+. |+++.+....... ......||+.|||||++ .+ ..++.++|||||||+||+|++ |+
T Consensus 188 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~~g~ 252 (325)
T 3kul_A 188 LVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAI------AF---------RTFSSASDVWSFGVVMWEVLAYGE 252 (325)
T ss_dssp CCEEECCCSSCEECC----CCEECC---CCGGGSCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTSC
T ss_pred CCEEECCCCcccccccCccceeeccCCCCcccccCHhHh------cC---------CCCCcHHHHHHHHHHHHHHHcCCC
Confidence 467888 6666665432221 13346778999999999 32 457789999999999999999 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+... . .. .........+.+++.+||..+|.+||++.++.+.+..+
T Consensus 253 ~p~~~~~~~~~~~~~~~~-~-------~~-------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l 311 (325)
T 3kul_A 253 RPYWNMTNRDVISSVEEG-Y-------RL-------------PAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311 (325)
T ss_dssp CTTTTSCHHHHHHHHHTT-C-------CC-------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHcC-C-------CC-------------CCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 99775443111 00000 0 00 00011122478899999999999999999999998888
Q ss_pred hcCC
Q 009274 166 IIKP 169 (538)
Q Consensus 166 ~~~~ 169 (538)
...+
T Consensus 312 ~~~~ 315 (325)
T 3kul_A 312 IRSP 315 (325)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 7443
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-13 Score=131.53 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=69.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+...... .....+||+.|||||++ .| ....++.++|||||||+||+|++|+ |
T Consensus 196 ~~~kl~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~------~~-------~~~~~~~~~DvwslG~il~ell~g~~p 261 (355)
T 1vzo_A 196 GHVVLTDFGLSKEFVADETE-RAYDFCGTIEYMAPDIV------RG-------GDSGHDKAVDWWSLGVLMYELLTGASP 261 (355)
T ss_dssp SCEEESCSSEEEECCGGGGG-GGCGGGSCCTTCCHHHH------TT-------CC---CTHHHHHHHHHHHHHHHHSSCT
T ss_pred CcEEEeeCCCCeecccCCCC-cccCcccCcCccChhhh------cC-------CCCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 467888 667766544322 24468999999999999 33 1244678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|........ .. ....................+.+++.+||..+|.+||+
T Consensus 262 f~~~~~~~~-------------~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~ 310 (355)
T 1vzo_A 262 FTVDGEKNS-------------QA----EISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLG 310 (355)
T ss_dssp TSCTTSCCC-------------HH----HHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred CccCCccch-------------HH----HHHHHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcC
Confidence 975432200 00 00000000000000111223778999999999999994
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-13 Score=134.76 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=50.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+|+..... .....||+.|||||++ .+ ..++.++|||||||+||+|+||+
T Consensus 198 ~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~ 257 (360)
T 3llt_A 198 STGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVI------LN---------LGWDVSSDMWSFGCVLAELYTGSL 257 (360)
T ss_dssp CCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeccCceecCCC-----CcCccCcccccCcHHH------cC---------CCCCCccchHHHHHHHHHHHHCCC
Confidence 4567888 556554433 3468999999999999 44 56889999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||....
T Consensus 258 pf~~~~ 263 (360)
T 3llt_A 258 LFRTHE 263 (360)
T ss_dssp SCCCSS
T ss_pred CCCCCc
Confidence 997643
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-13 Score=131.13 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=70.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++....... .....||+.|||||++ . +.++.++|||||||+||||++|.
T Consensus 193 ~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~----------~~~~~~~DiwslG~il~el~~g~~ 253 (311)
T 3p1a_A 193 RGRCKLGDFGLLVELGTAGA---GEVQEGDPRYMAPELL------Q----------GSYGTAADVFSLGLTILEVACNME 253 (311)
T ss_dssp GGCEEECCCTTCEECC---------CCCCCGGGCCGGGG------G----------TCCSTHHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEccceeeeecccCCC---CcccCCCccccCHhHh------c----------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 3468898 56666554332 4457899999999988 2 35788999999999999999997
Q ss_pred ccch-hhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTK-ELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.. .....+. ....+.... ......+.+++.+||+.+|.+||++.++.+
T Consensus 254 ~~~~~~~~~~~~------------~~~~~~~~~-----------~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 254 LPHGGEGWQQLR------------QGYLPPEFT-----------AGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp CCSSHHHHHHHT------------TTCCCHHHH-----------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCccHHHHHh------------ccCCCcccc-----------cCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 4443 3222111 000001000 112234788999999999999999887654
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-13 Score=139.32 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=72.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+.+..... .+..+||+.|||||++ .+ ..++.++|||||||+||||++|+ |
T Consensus 323 g~vKL~DFGla~~~~~~~~---~~~~~GT~~Y~APEvl------~~---------~~~~~~~DiwSLGvilyeLltG~~P 384 (576)
T 2acx_A 323 GHIRISDLGLAVHVPEGQT---IKGRVGTVGYMAPEVV------KN---------ERYTFSPDWWALGCLLYEMIAGQSP 384 (576)
T ss_dssp SCEEECCCTTCEECCTTCC---EECCCSCGGGCCHHHH------TT---------CEESSHHHHHHHHHHHHHHHHSSCS
T ss_pred CCeEEEecccceecccCcc---ccccCCCccccCHHHH------cC---------CCCCccchHHHHHHHHHHHHhCCCC
Confidence 567888 67777665432 4567999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|........ . ......+...+..........+.+++.+||..+|.+||.
T Consensus 385 F~~~~~~~~-------------~----~~i~~~i~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g 433 (576)
T 2acx_A 385 FQQRKKKIK-------------R----EEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLG 433 (576)
T ss_dssp SSCSSSCCC-------------H----HHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred Ccccccchh-------------H----HHHHHHhhcccccCCccCCHHHHHHHHHhccCCHHHcCC
Confidence 987532200 0 000010111100000112234788999999999999994
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-13 Score=126.23 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=45.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... ..+...||+.|||||++ .+ ...+++++|||||||++|+|++|+ |
T Consensus 137 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~p 200 (288)
T 1ob3_A 137 GELKIADFGLARAFGIPVR--KYTHEIVTLWYRAPDVL------MG--------SKKYSTTIDIWSVGCIFAEMVNGTPL 200 (288)
T ss_dssp SCEEECCTTHHHHHCC-----------CCCTTCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeECccccccCcccc--ccccccccccccCchhe------eC--------CCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 467888 55555543221 14467899999999998 33 235789999999999999999999 9
Q ss_pred cchhh
Q 009274 89 FTKEL 93 (538)
Q Consensus 89 f~~~~ 93 (538)
|.+..
T Consensus 201 f~~~~ 205 (288)
T 1ob3_A 201 FPGVS 205 (288)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98643
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-14 Score=138.07 Aligned_cols=116 Identities=11% Similarity=0.029 Sum_probs=75.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+|+...... ....||+.|||||++ .+ ....+++++|||||||+||+|+||+ |
T Consensus 231 ~~~kL~DFG~a~~~~~~~-----~~~~~t~~y~aPE~~------~~-------~~~~~~~~~DiwSlG~il~elltg~~P 292 (371)
T 3q60_A 231 GRLMLGDVSALWKVGTRG-----PASSVPVTYAPREFL------NA-------STATFTHALNAWQLGLSIYRVWCLFLP 292 (371)
T ss_dssp SCEEECCGGGEEETTCEE-----EGGGSCGGGCCHHHH------TC-------SEEECCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEecceeeecCCCc-----cCccCCcCCcChhhc------cC-------CCCCcCccccHHHHHHHHHHHHhCCCC
Confidence 468998 6677665442 246777999999999 32 1256789999999999999999999 9
Q ss_pred cchhhhhheee---ccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRC---VSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......... ........ .....+ ........+.+++.+||..+|.+||++.++.+
T Consensus 293 f~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 293 FGLVTPGIKGSWKRPSLRVPGT---DSLAFG------------SCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp TTBCCTTCTTCCCBCCTTSCCC---CSCCCT------------TSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCcCcccccchhhhhhhhccc---cccchh------------hccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 98864431110 00000000 000000 00111223778999999999999999877654
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-13 Score=132.29 Aligned_cols=131 Identities=17% Similarity=0.105 Sum_probs=78.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+. |+++....... .......||+.|||||++ .+ ..+++++|||||||++|+|+||+ |
T Consensus 171 ~~~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 234 (326)
T 3uim_A 171 FEAVVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYL------ST---------GKSSEKTDVFGYGVMLLELITGQRA 234 (326)
T ss_dssp CCEEECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHH------HH---------SEECHHHHHHHHHHHHHHHHHCCCS
T ss_pred CCEEeccCccccccCcccc-cccccccCCcCccCHHHh------cc---------CCCCccccchhHHHHHHHHHhCCCc
Confidence 357888 56666553332 224457799999999998 22 45778999999999999999999 9
Q ss_pred cchhhhhhee------eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 89 FTKELIDYIR------CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 89 f~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
|.......-. ..........+.............+..+ ..+.+++.+||..+|.+||++.++.+.+
T Consensus 235 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~li~~cl~~dP~~Rps~~ell~~L 306 (326)
T 3uim_A 235 FDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEV--------EQLIQVALLCTQSSPMERPKMSEVVRML 306 (326)
T ss_dssp BCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHH--------HHHHHHHHHHTCSCGGGSCCHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHH--------HHHHHHHHHHhCcCCccCCCHHHHHHHh
Confidence 9743211000 0000000000000000000000001111 1277899999999999999999999887
Q ss_pred HHhh
Q 009274 163 RELI 166 (538)
Q Consensus 163 ~~l~ 166 (538)
....
T Consensus 307 ~~~~ 310 (326)
T 3uim_A 307 EGDG 310 (326)
T ss_dssp HTSS
T ss_pred cCcc
Confidence 7643
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-13 Score=130.82 Aligned_cols=136 Identities=12% Similarity=0.154 Sum_probs=82.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++...+... .....||+.|||||++....... .....++.++|||||||++|+|+||+
T Consensus 152 ~~~~kL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~-------~~~~~~~~~~DiwSlG~il~el~tg~~ 221 (396)
T 4eut_A 152 QSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRK-------DHQKKYGATVDLWSIGVTFYHAATGSL 221 (396)
T ss_dssp CEEEEECCGGGCEECCCGGG---SSCSSSCCTTCCHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ceeEEEecCCCceEccCCCc---cccccCCccccCHHHhhcccccc-------ccccCCCcHHHHHHHHHHHHHHHHCCC
Confidence 4568898 66776665432 45688999999999984321110 00145678999999999999999999
Q ss_pred ccchhhhh-----heeec-ccccc---------Ccchhhcc-h---hhHHHHHHHHHHHhhhcCccchHHHHHhhhhccC
Q 009274 88 QFTKELID-----YIRCV-STKAS---------DDNIACLG-M---YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFD 148 (538)
Q Consensus 88 pf~~~~~~-----~~~~~-~~~~~---------~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 148 (538)
||...... .+..+ ..+.. ......+. . ........+. .+.+++.+||..+
T Consensus 222 Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~l~~ll~~~L~~d 290 (396)
T 4eut_A 222 PFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQV-----------LLTPVLANILEAD 290 (396)
T ss_dssp SEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHH-----------HHHHHHHHHSCCC
T ss_pred CCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHh-----------hchHHHHHhhccC
Confidence 99753211 00000 00000 00000000 0 0000011111 2677999999999
Q ss_pred CCCCcchhhHHHHHHHhhc
Q 009274 149 PGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 149 p~~r~~~~~~~~~l~~l~~ 167 (538)
|.+||++.++.+.+..++.
T Consensus 291 P~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 291 QEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp TTTSCCHHHHHHHHHHHHT
T ss_pred hhhhccHHHHHHHHHHHhh
Confidence 9999999999888887763
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-13 Score=125.92 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=80.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+.+|+. |+++........ ......||+.|||||++ .+ ..+++++||||||+++|+|++ |+
T Consensus 143 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~ll~~g~~ 206 (269)
T 4hcu_A 143 QVIKVSDFGMTRFVLDDQYT-SSTGTKFPVKWASPEVF------SF---------SRYSSKSDVWSFGVLMWEVFSEGKI 206 (269)
T ss_dssp GCEEECCTTGGGGBCCHHHH-STTSTTCCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEeccccccccccccccc-cccCcccccccCCHHHh------cC---------CCCCchhhhHHHHHHHHHHhcCCCC
Confidence 457888 556655544322 24457788999999998 22 457789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+. ....... ......+.+++.+||..+|.+||++.++.+.+.++
T Consensus 207 p~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l 264 (269)
T 4hcu_A 207 PYENRSNSEVVEDIS----------------------TGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 264 (269)
T ss_dssp TTTTCCHHHHHHHHH----------------------TTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHh----------------------cCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHH
Confidence 99875444111 000 0000000 01122377899999999999999999999988876
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 265 ~ 265 (269)
T 4hcu_A 265 A 265 (269)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-13 Score=142.29 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=74.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+........ ..+++||+.|||||++ .+ ..++.++|+|||||+||||++|+
T Consensus 478 ~g~ikL~DFGla~~~~~~~~~--~~~~~GT~~Y~APE~l------~~---------~~~~~~~DvwSlGvilyelltG~~ 540 (674)
T 3pfq_A 478 EGHIKIADFGMCKENIWDGVT--TKTFCGTPDYIAPEII------AY---------QPYGKSVDWWAFGVLLYEMLAGQA 540 (674)
T ss_dssp SSCEEECCCTTCEECCCTTCC--BCCCCSCSSSCCHHHH------TC---------CCBSTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeecceeeccccCCcc--cccccCCCcccCHhhh------cC---------CCCCccceEechHHHHHHHHcCCC
Confidence 3567888 667654333222 5679999999999999 44 67889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.+.+...+........ ...+ ......+.+++.+||.++|.+|+.+
T Consensus 541 Pf~~~~~~~~~~~i~~~~------~~~p---------------~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 541 PFEGEDEDELFQSIMEHN------VAYP---------------KSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp SSCCSSHHHHHHHHHSSC------CCCC---------------TTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred CCCCCCHHHHHHHHHhCC------CCCC---------------ccCCHHHHHHHHHHccCCHHHCCCC
Confidence 998865542220000000 0000 0111237789999999999999987
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-13 Score=128.53 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=71.7
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++.+..... .....||+.|+|||++ .+ ..+++++||||||+++|+|++|. ||
T Consensus 150 ~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p~ 211 (283)
T 3bhy_A 150 RIKLIDFGIAHKIEAGNE---FKNIFGTPEFVAPEIV------NY---------EPLGLEADMWSIGVITYILLSGASPF 211 (283)
T ss_dssp CEEECCCTTCEECC-----------CCCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred ceEEEecccceeccCCCc---ccccCCCcCccCccee------cC---------CCCCcchhhhhHHHHHHHHHHCCCCC
Confidence 57888 45565554322 4567899999999998 43 56788999999999999999999 99
Q ss_pred chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
......... .+. .. ......... ......+.+++.+||..+|.+||++.++.+
T Consensus 212 ~~~~~~~~~~~~~---------~~-~~~~~~~~~--------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 212 LGETKQETLTNIS---------AV-NYDFDEEYF--------SNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp CCSSHHHHHHHHH---------TT-CCCCCHHHH--------TTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCcchHHHHHHhH---------hc-ccCCcchhc--------ccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 875443111 000 00 000000000 112223778999999999999999888765
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-13 Score=128.37 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=76.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++........ ....+||+.|||||++ .+ ...+++++|||||||++|+|++|+ |
T Consensus 145 ~~~kl~Dfg~~~~~~~~~~~--~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~p 208 (317)
T 2pmi_A 145 GQLKLGDFGLARAFGIPVNT--FSSEVVTLWYRAPDVL------MG--------SRTYSTSIDIWSCGCILAEMITGKPL 208 (317)
T ss_dssp CCEEECCCSSCEETTSCCCC--CCCCCSCCTTCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEECcCccceecCCCccc--CCCCcccccccCchHh------hC--------CCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 457888 566665433222 4568999999999998 33 235788999999999999999999 9
Q ss_pred cchhhhhhee-ec----cccccC--cchh--------h-cchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCC
Q 009274 89 FTKELIDYIR-CV----STKASD--DNIA--------C-LGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGC 151 (538)
Q Consensus 89 f~~~~~~~~~-~~----~~~~~~--~~~~--------~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~ 151 (538)
|.+....... .+ ...... .... . ......+. ........ .....+.+++.+||..+|.+
T Consensus 209 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 284 (317)
T 2pmi_A 209 FPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLR----QVLQPHTKEPLDGNLMDFLHGLLQLNPDM 284 (317)
T ss_dssp CCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSH----HHHGGGCSSCCCHHHHHHHHHHSCSSGGG
T ss_pred CCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHH----HhhcccccccCCHHHHHHHHHHCCCCccc
Confidence 9875433111 00 000000 0000 0 00000000 01111111 12234888999999999999
Q ss_pred CcchhhHHH
Q 009274 152 RPLLTNVWK 160 (538)
Q Consensus 152 r~~~~~~~~ 160 (538)
||++.++.+
T Consensus 285 Rpt~~e~l~ 293 (317)
T 2pmi_A 285 RLSAKQALH 293 (317)
T ss_dssp SCCHHHHTT
T ss_pred CCCHHHHhC
Confidence 999877654
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-13 Score=132.83 Aligned_cols=111 Identities=9% Similarity=0.141 Sum_probs=71.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+|+.+..... .++++||+.|||||++ .+ .....++.++|||||||+||+|++|+ |
T Consensus 152 g~vkL~DFG~a~~~~~~~~---~~~~~gt~~Y~aPE~~------~~------~~~~~~~~~~DiwSlG~il~elltG~~P 216 (384)
T 4fr4_A 152 GHVHITDFNIAAMLPRETQ---ITTMAGTKPYMAPEMF------SS------RKGAGYSFAVDWWSLGVTAYELLRGRRP 216 (384)
T ss_dssp SCEEECCCTTCEECCTTCC---BCCCCSCGGGCCGGGT------CC------CSSCCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeccceeeeccCCCc---eeccCCCccccCCeee------cc------CCCCCCCccceeechHHHHHHHHhCCCC
Confidence 467888 66776654432 5579999999999998 32 01245788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|........ .... .................+.+++.+||..+|.+||+.
T Consensus 217 f~~~~~~~~--------------~~~~----~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~ 265 (384)
T 4fr4_A 217 YHIRSSTSS--------------KEIV----HTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQ 265 (384)
T ss_dssp SCCCTTSCH--------------HHHH----HHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCS
T ss_pred CCCCCCccH--------------HHHH----HHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhccc
Confidence 975422200 0000 000000000001112347889999999999999984
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-13 Score=129.28 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=67.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 158 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~p 220 (327)
T 3a62_A 158 GHVKLTDFGLCKESIHDGT--VTHTFCGTIEYMAPEIL------MR---------SGHNRAVDWWSLGALMYDMLTGAPP 220 (327)
T ss_dssp SCEEECCCSCC------------CTTSSCCTTSCHHHH------TT---------SCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEEeCCcccccccCCc--cccccCCCcCccCHhhC------cC---------CCCCCcccchhHHHHHHHHHHCCCC
Confidence 467888 55555433322 24568999999999999 43 56788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
|.+.....+. ..+..............+.+++.+||..+|.+||+.
T Consensus 221 f~~~~~~~~~---------------------~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~ 266 (327)
T 3a62_A 221 FTGENRKKTI---------------------DKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGA 266 (327)
T ss_dssp CCCSSHHHHH---------------------HHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTS
T ss_pred CCCCCHHHHH---------------------HHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhccCC
Confidence 9875444111 000000000001112247789999999999999964
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-13 Score=131.90 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=49.0
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+|+..... .+..+||+.|||||++ .+ ..++.++|||||||+||+|+||+ ||
T Consensus 234 ~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~pf 293 (397)
T 1wak_A 234 KVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVL------IG---------SGYNTPADIWSTACMAFELATGDYLF 293 (397)
T ss_dssp CEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHH------HT---------SCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred ceEecccccccccccc-----CccCCCCCcccCChhh------cC---------CCCCcHHHHHHHHHHHHHHhhCCCCC
Confidence 67888 566665543 4467999999999999 44 45789999999999999999999 99
Q ss_pred chh
Q 009274 90 TKE 92 (538)
Q Consensus 90 ~~~ 92 (538)
.+.
T Consensus 294 ~~~ 296 (397)
T 1wak_A 294 EPH 296 (397)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-13 Score=134.68 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=49.6
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~ 90 (538)
.|+. |+|+..... ..+.+||+.|||||++ .+ ..++.++|||||||+||+|+||+ ||.
T Consensus 241 vkL~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltG~~pf~ 300 (429)
T 3kvw_A 241 IKVIDFGSSCYEHQR-----VYTYIQSRFYRAPEVI------LG---------ARYGMPIDMWSLGCILAELLTGYPLLP 300 (429)
T ss_dssp EEECCCTTCEETTCC-----CCSSCSCGGGCCHHHH------HT---------BCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred eEEeecccceecCCc-----ccccCCCCCccChHHH------hC---------CCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence 6888 556554433 3468999999999999 44 56789999999999999999999 998
Q ss_pred hhhhh
Q 009274 91 KELID 95 (538)
Q Consensus 91 ~~~~~ 95 (538)
+....
T Consensus 301 ~~~~~ 305 (429)
T 3kvw_A 301 GEDEG 305 (429)
T ss_dssp CSSHH
T ss_pred CCCHH
Confidence 75433
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-13 Score=141.00 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=76.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+....... ....+||+.|||||++ . +.+++++|||||||++|+|++|+
T Consensus 165 ~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~----------~~~~~~~DiwslG~il~~ll~g~~ 225 (484)
T 3nyv_A 165 DANIRIIDFGLSTHFEASKK---MKDKIGTAYYIAPEVL------H----------GTYDEKCDVWSTGVILYILLSGCP 225 (484)
T ss_dssp TCCEEECCTTHHHHBCCCCS---HHHHTTGGGTCCHHHH------H----------TCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEeeeeeEEcccccc---cccCCCCccccCceee------c----------CCCCCcceeHHHHHHHHHHHHCCC
Confidence 3457888 56666654432 5568899999999998 3 35788999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+. .+. +.. .....+.+ ......+.+++.+||..+|.+||++.++.+
T Consensus 226 pf~~~~~~~~~~~i~-~~~-----~~~~~~~~------------~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 226 PFNGANEYDILKKVE-KGK-----YTFELPQW------------KKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp SSCCSSHHHHHHHHH-HCC-----CCCCSGGG------------GGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCHHHHHHHHH-cCC-----CCCCCccc------------ccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 99876544222 000 000 00000111 111223778999999999999999987765
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-13 Score=139.46 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+....... ....+||+.|||||++ . +.+++++|||||||+||+|++|+ |
T Consensus 161 ~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~----------~~~~~~~DiwslG~il~~ll~g~~p 221 (486)
T 3mwu_A 161 CDIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVL------R----------GTYDEKCDVWSAGVILYILLSGTPP 221 (486)
T ss_dssp CCEEECSCSCTTTBCCC-------CCTTGGGGCCGGGG------G----------SCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEECCcCeECCCCCc---cCCCcCCCCCCCHHHh------C----------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 66666654432 5568999999999998 3 35788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.....+. .+... . .....+.+ ......+.+++.+||..+|.+||++.++.+
T Consensus 222 f~~~~~~~~~~~i~~~-~-----~~~~~~~~------------~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 222 FYGKNEYDILKRVETG-K-----YAFDLPQW------------RTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp SCCSSHHHHHHHHHHT-C-----CCSCSGGG------------GGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHHHhC-C-----CCCCCccc------------CCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 9876444221 00000 0 00000111 111223778999999999999999988776
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-13 Score=129.79 Aligned_cols=123 Identities=12% Similarity=0.192 Sum_probs=71.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++........ ......||+.|+|||++ .+ ..+++++||||||+++|+|++|+ |
T Consensus 171 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 234 (309)
T 2h34_A 171 DFAYLVDFGIASATTDEKLT-QLGNTVGTLYYMAPERF------SE---------SHATYRADIYALTCVLYECLTGSPP 234 (309)
T ss_dssp SCEEECSCCC-----------------CCGGGCCGGGT------CC-------------CCCHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEecCccCccccccccc-cccccCCCcCccCHHHH------cC---------CCCCchHhHHHHHHHHHHHHHCCCC
Confidence 457888 455555543221 23467899999999998 43 56778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCc-chhhHHHHHHHhhc
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP-LLTNVWKCIRELII 167 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~-~~~~~~~~l~~l~~ 167 (538)
|.......+... ....... +..........+.+++.+||..+|.+|| ++.++.+.+.+.+.
T Consensus 235 f~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~ 296 (309)
T 2h34_A 235 YQGDQLSVMGAH----------INQAIPR--------PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA 296 (309)
T ss_dssp SCSCHHHHHHHH----------HHSCCCC--------GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred CCCchHHHHHHH----------hccCCCC--------ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence 987644311100 0000000 0000111223478899999999999999 67888888887664
Q ss_pred C
Q 009274 168 K 168 (538)
Q Consensus 168 ~ 168 (538)
.
T Consensus 297 ~ 297 (309)
T 2h34_A 297 T 297 (309)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-13 Score=130.80 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=79.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++.+.............||+.|||||++ .+ ..+++++|||||||++|+|+| |.
T Consensus 211 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~t~g~~ 275 (343)
T 1luf_A 211 MVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI------FY---------NRYTTESDVWAYGVVLWEIFSYGLQ 275 (343)
T ss_dssp GCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CeEEEeecCCCcccccCccccccCCCcccceecChhhh------cc---------CCcCcccccHHHHHHHHHHHhcCCC
Confidence 467888 556665544322224467899999999998 22 457789999999999999999 99
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+. .+.. .. ... ........+.+++.+||+.+|.+||+..++.+.+.++.
T Consensus 276 p~~~~~~~~~~~~~~~-~~-----~~~---------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~ 334 (343)
T 1luf_A 276 PYYGMAHEEVIYYVRD-GN-----ILA---------------CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 334 (343)
T ss_dssp TTTTSCHHHHHHHHHT-TC-----CCC---------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred cCCCCChHHHHHHHhC-CC-----cCC---------------CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHH
Confidence 99875443111 0000 00 000 00111224788999999999999999999999888875
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-13 Score=130.29 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=76.4
Q ss_pred eeeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 11 KSVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
+..+|+. |+|+......... ......||+.|||||++ .+. .......+++++|||||||++|||+||
T Consensus 149 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~---~~~~~~~~~~~~DvwslG~il~el~tg 219 (301)
T 3q4u_A 149 NGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVL------DET---IQVDCFDSYKRVDIWAFGLVLWEVARR 219 (301)
T ss_dssp TSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHH------TTC---CCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEeeCCCeeecccccccccccccccccccceeChhhh------cCc---CCCCcccCCchhhHHHHHHHHHHHHhh
Confidence 3468888 5665544332211 12245899999999999 330 000001456799999999999999999
Q ss_pred ----------C-ccchhhhhhee-----e-ccccccCcchhhcchhhH-HHHHHHHHHHhhhcCccchHHHHHhhhhccC
Q 009274 87 ----------E-QFTKELIDYIR-----C-VSTKASDDNIACLGMYMA-WMEKVTYLLENKFGSEFVSLQLMFCQCLNFD 148 (538)
Q Consensus 87 ----------~-pf~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 148 (538)
+ ||......... . ...... ....+.. ..... + ..+.+++.+||+.+
T Consensus 220 ~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~--------~~l~~li~~cl~~d 283 (301)
T 3q4u_A 220 MVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQ-----RPNIPNRWFSDPT---L--------TSLAKLMKECWYQN 283 (301)
T ss_dssp BCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC-----CCCCCGGGGGSHH---H--------HHHHHHHHHHCCSS
T ss_pred hcCccccccccccccccCCCCcchhhhhHHHhccCC-----CCCCChhhccCcc---H--------HHHHHHHHHHhhcC
Confidence 6 77553222000 0 000000 0000000 00001 1 13778999999999
Q ss_pred CCCCcchhhHHHHHHHh
Q 009274 149 PGCRPLLTNVWKCIREL 165 (538)
Q Consensus 149 p~~r~~~~~~~~~l~~l 165 (538)
|.+||++.++.+.+.++
T Consensus 284 P~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 284 PSARLTALRIKKTLTKI 300 (301)
T ss_dssp GGGSCCHHHHHHHHHHH
T ss_pred hhhCCCHHHHHHHHhcc
Confidence 99999999998877653
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-13 Score=132.36 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=76.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
.+.|+. |+++.+...+. ....+||+.|||||++ .| ...++.++|||||||+||||++|+ |
T Consensus 194 ~~~kl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ell~G~~p 256 (420)
T 1j1b_A 194 AVLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELI------FG--------ATDYTSSIDVWSAGCVLAELLLGQPI 256 (420)
T ss_dssp TEEEECCCTTCEECCTTCC---CCSCCSCTTSCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CeEEeccchhhhhcccCCC---ceeeeeCCCcCCHHHH------cC--------CCCCCchhhhHHHHHHHHHHHhCCCC
Confidence 457898 67776654432 3468999999999999 33 235788999999999999999999 9
Q ss_pred cchhhhhh-eeeccccccCcchhhcchhhHHHHHHHHHHHh-----------------hhcCccchHHHHHhhhhccCCC
Q 009274 89 FTKELIDY-IRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-----------------KFGSEFVSLQLMFCQCLNFDPG 150 (538)
Q Consensus 89 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~l~~~p~ 150 (538)
|.+..... +..+. + ....+ ..+.+...... ........+.+++.+||..+|.
T Consensus 257 f~~~~~~~~l~~i~-~-------~lg~p--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~ 326 (420)
T 1j1b_A 257 FPGDSGVDQLVEII-K-------VLGTP--TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPT 326 (420)
T ss_dssp SCCSSHHHHHHHHH-H-------HHCSC--CHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGG
T ss_pred CCCCCHHHHHHHHH-H-------HhCCC--CHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChh
Confidence 98754321 11000 0 00000 00001000000 0011123478899999999999
Q ss_pred CCcchhhHHH
Q 009274 151 CRPLLTNVWK 160 (538)
Q Consensus 151 ~r~~~~~~~~ 160 (538)
+||++.++.+
T Consensus 327 ~R~t~~e~l~ 336 (420)
T 1j1b_A 327 ARLTPLEACA 336 (420)
T ss_dssp GSCCHHHHHT
T ss_pred HCCCHHHHhC
Confidence 9999887654
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-13 Score=127.62 Aligned_cols=112 Identities=20% Similarity=0.283 Sum_probs=69.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... .....||+.|||||++ . ..+++++|||||||++|+|++|+
T Consensus 163 ~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~------~----------~~~~~~~Di~slG~il~~ll~g~~ 223 (285)
T 3is5_A 163 HSPIKIIDFGLAELFKSDEH---STNAAGTALYMAPEVF------K----------RDVTFKCDIWSAGVVMYFLLTGCL 223 (285)
T ss_dssp TCCEEECCCCCCCC-------------CTTGGGCCHHHH------T----------TCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeeecceecCCccc---CcCcccccCcCChHHh------c----------cCCCcccCeehHHHHHHHHHhCCC
Confidence 3557888 56666554432 4568899999999998 2 34678999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+. ........ .. .........+.+++.+||..+|.+||++.++.+
T Consensus 224 pf~~~~~~~~~~~~~~~~~~----~~---------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 224 PFTGTSLEEVQQKATYKEPN----YA---------------VECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp SSCCSSHHHHHHHHHHCCCC----CC---------------C--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred CCCCCCHHHHHhhhccCCcc----cc---------------cccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99875443111 00000000 00 000011223778999999999999999888654
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-13 Score=130.86 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=50.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++..... .....||+.|||||++ .+ ..++.++|||||||+||+|++|+
T Consensus 178 ~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~ 237 (355)
T 2eu9_A 178 NTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVI------LE---------LGWAQPCDVWSIGCILFEYYRGFT 237 (355)
T ss_dssp CCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeecCcccccccc-----ccCCcCCCcccCCeee------ec---------CCCCCccchHHHHHHHHHHHhCCC
Confidence 5668888 556654433 3468999999999999 44 56789999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||....
T Consensus 238 pf~~~~ 243 (355)
T 2eu9_A 238 LFQTHE 243 (355)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 998643
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-13 Score=130.41 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=80.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++...............||+.|||||++ .+ ..++.++|||||||+||+|++ |+
T Consensus 194 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~~ 258 (334)
T 2pvf_A 194 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL------FD---------RVYTHQSDVWSFGVLMWEIFTLGGS 258 (334)
T ss_dssp CCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEccccccccccccccccccCCCCcccceeChHHh------cC---------CCcChHHHHHHHHHHHHHHHhCCCC
Confidence 457888 566665544322223456789999999998 22 457789999999999999999 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. ..+........ ......+.+++.+||..+|.+||++.++.+.+.++.
T Consensus 259 p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~ 317 (334)
T 2pvf_A 259 PYPGIPVEELF---------------------KLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 317 (334)
T ss_dssp SSTTCCHHHHH---------------------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcCcCCHHHHH---------------------HHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 99875433111 00000000000 112234788999999999999999999999888875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-09 Score=115.21 Aligned_cols=233 Identities=7% Similarity=-0.041 Sum_probs=146.6
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCCC----cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc---
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSGG----GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT--- 363 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--- 363 (538)
|...+..++|+|++..++++.+.+| .|++||+.+++........ ......+|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~------~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER------VKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE------ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC------cccceEEEEeCCCEEEEEEECCcccc
Confidence 4456889999998776655555444 8999999876543211110 11124589999999998888766
Q ss_pred -------------EEEEECCCCce----eEEecCCCCCeEEEEEe--CCEEEEEec-----CCcEEEEECCC------Cc
Q 009274 364 -------------IKAWSLLDGTL----SCTMSGHKSAVSTLAVC--NGVLYSGSR-----DGTIRLWSLSD------HS 413 (538)
Q Consensus 364 -------------i~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~-----dg~i~iwd~~~------~~ 413 (538)
|++|++.+++. +.....|...+.++.|+ +++|+.++. +..|++||+.+ +.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 99999988763 22223355668899999 456766654 57899999986 43
Q ss_pred -eeEEEecCCCCceEEEEEEcCCCCEEEEEeCC----CcEEEEeCCcc----eeeeccccc--eEEEEEe--CCCEEEEE
Q 009274 414 -LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES----GSIKVWRNDKF----MKSMQTHKG--SVFAVFL--EGKWLFTG 480 (538)
Q Consensus 414 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~h~~--~v~~~~~--~~~~l~sg 480 (538)
....+..+.... . ..++++|+.|+..+.. +.|.+||.... ...+..|.. .+..+.+ ++.++++.
T Consensus 277 ~~~~~l~~~~~~~-~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 277 LKWVKLIDNFEGE-Y--DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp CCCEEEECSSSSC-E--EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred cceEEeeCCCCcE-E--EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 345555443332 2 2577888888776653 35899996543 245555544 5666766 55677788
Q ss_pred eCCCe--EEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEE-EEE---CCCeEEEEEcC
Q 009274 481 GWDKT--VSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLF-VGC---ADRTVKVYYYG 537 (538)
Q Consensus 481 s~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~-sg~---~dg~v~vw~~~ 537 (538)
..|+. |++||+.+++........ ...+..+.+ +++ .++ +.+ ..+.|++||+.
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred EECCEEEEEEEECCCCCEEEecCCC-----CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 88885 566777555533322211 223333433 344 444 333 35789999874
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-13 Score=133.07 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=56.6
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++........ ....+||+.|||||++ .+ ..+++++|||||||++|+|++|+ ||
T Consensus 147 ~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~ll~g~~pf 209 (325)
T 3kn6_A 147 EIKIIDFGFARLKPPDNQP--LKTPCFTLHYAAPELL------NQ---------NGYDESCDLWSLGVILYTMLSGQVPF 209 (325)
T ss_dssp EEEECCCTTCEECCC---------------------------------------CCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred cEEEeccccceecCCCCCc--ccccCCCcCccCHHHh------cC---------CCCCCccchHHHHHHHHHHHhCCCCC
Confidence 57888 566655544332 5678999999999998 33 55788999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
......... . . ...............+..........+.+++.+||..+|.+||++.++.+
T Consensus 210 ~~~~~~~~~------~-~---~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 210 QSHDRSLTC------T-S---AVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp C-------C------C-C---HHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred CCCcccccc------c-c---HHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 875432100 0 0 00000000000000000000011224778999999999999999888754
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-08 Score=92.92 Aligned_cols=278 Identities=11% Similarity=0.007 Sum_probs=171.7
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEE-EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT-FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
-+.+......+.+++++ ++..++...++.|.+||.. ++.... +..+...+.++++.+++ .++++...++.|..||
T Consensus 12 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 12 EFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLS 89 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEEC
Confidence 34455566788999998 6666666678999999987 554432 22334678899987754 5667666678899998
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeE-EecCCCCCeEEEEEe--CCEEEEE
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-TMSGHKSAVSTLAVC--NGVLYSG 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~--~~~l~s~ 398 (538)
.. +.. ..+...........+++.+++++.++...++.|..||.. ++... .+......+.+++++ +++.++.
T Consensus 90 ~~-g~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 90 KK-GGF----TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp TT-SCE----EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred CC-CCe----EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence 76 321 111111111122244666778877777668899999987 55442 233345678899997 3455555
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeee--ccccceEEEEEe--CC
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL--EG 474 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~h~~~v~~~~~--~~ 474 (538)
..++.|..+|. +++... +...........+++.+++++.++....+.|..||.......+ ..+...+.++.. +|
T Consensus 164 ~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS 241 (300)
T ss_dssp TTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT
T ss_pred cCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCC
Confidence 55788999998 555443 3322222223346888999877776677789999964333322 233455667766 67
Q ss_pred CEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 475 KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 475 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++.++...++.|..||.. +.......... ...+......+++.++.++.. .|..++..
T Consensus 242 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITND-NTIQEYQLQTE---NAEPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECCST---TCCCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred CEEEeccCCCeEEEECCC-CcEEEEECCcc---CCccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 766666567999999984 44332211111 122223333457778777764 67766653
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-13 Score=136.68 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=68.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
..+|+. |+|+.+.... ..+..+||+.|||||++ .+ .....++.++|||||||+||+|++|+ |
T Consensus 279 ~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~------~~~~~~~~~~DiwslG~il~~lltg~~p 343 (419)
T 3i6u_A 279 CLIKITDFGHSKILGETS---LMRTLCGTPTYLAPEVL------VS------VGTAGYNRAVDCWSLGVILFICLSGYPP 343 (419)
T ss_dssp CCEEECCSSTTTSCC--------------CTTCCTTTT------C----------CTTHHHHHHHHHHHHHHHHHHSSCS
T ss_pred ceEEEeecccceecCCCc---cccccCCCCCccCceee------ec------CCCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence 358888 6677765443 25678999999999998 21 01245778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|............. .........+.. ......+.+++.+||..+|.+||++.++.+
T Consensus 344 f~~~~~~~~~~~~i--------~~~~~~~~~~~~--------~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 344 FSEHRTQVSLKDQI--------TSGKYNFIPEVW--------AEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp SCCCSSSCCHHHHH--------HTTCCCCCHHHH--------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCcchHHHHHHH--------hcCCCCCCchhh--------cccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 97643221000000 000000000100 112223778999999999999999887665
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-13 Score=134.64 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=75.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++...+.. ...+.+||+.|+|||++ .| ....++++|||||||+||+|++|+ |
T Consensus 153 ~~vkL~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlGvil~elltG~~P 215 (476)
T 2y94_A 153 MNAKIADFGLSNMMSDGE---FLRTSCGSPNYAAPEVI------SG--------RLYAGPEVDIWSSGVILYALLCGTLP 215 (476)
T ss_dssp CCEEECCCSSCEECCTTC---CBCCCCSCSTTCCHHHH------TT--------CCBCSHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCeEEEeccchhhccccc---cccccCCCcCeEChhhc------cC--------CCCCCCcceehhhHHHHHHHhhCCCC
Confidence 457888 6677665543 25578999999999999 44 122368999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. ..+..............+.+++.+||..+|.+||++.++.+
T Consensus 216 f~~~~~~~~~---------------------~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 216 FDDDHVPTLF---------------------KKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp SCCSSSHHHH---------------------HHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCHHHHH---------------------HHHhcCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 9875433111 00000000000011224778999999999999999988775
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-13 Score=126.04 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=71.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++..|+. |+++........ ......||+.|||||++ .+ ..+++++|||||||++|+|++ |.
T Consensus 152 ~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~ell~~g~ 215 (281)
T 1mp8_A 152 NDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESI------NF---------RRFTSASDVWMFGVCMWEILMHGV 215 (281)
T ss_dssp TTEEEECC--------------------CCGGGCCHHHH------HH---------CCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEECccccccccCccccc-ccccCCCcccccChhhc------cc---------CCCCCccCchHHHHHHHHHHhcCC
Confidence 3467888 566666544321 13356789999999998 22 457789999999999999997 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.. .... .........+.+++.+||+.+|.+||++.++.+.+..+
T Consensus 216 ~pf~~~~~~~~~~~i~~---------~~~~------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 216 KPFQGVKNNDVIGRIEN---------GERL------------PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp CTTTTCCGGGHHHHHHT---------TCCC------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHc---------CCCC------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 99875333111 0000 0000 00011223478899999999999999999999988876
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 275 ~ 275 (281)
T 1mp8_A 275 L 275 (281)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.6e-13 Score=124.10 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=78.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....||+.|||||++ .+ ..+++++||||||+++|+|++|. |
T Consensus 159 ~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~~~~~ 220 (284)
T 2a19_B 159 KQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQI------SS---------QDYGKEVDLYALGLILAELLHVCDT 220 (284)
T ss_dssp TEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHH------HC---------SCCCTHHHHHHHHHHHHHHHSCCSS
T ss_pred CCEEECcchhheecccccc---ccccCCcccccChhhh------cc---------CCCcchhhhHHHHHHHHHHHhcCCc
Confidence 457888 55566554432 3467899999999998 33 45788999999999999999999 8
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC-ccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
|....... . ......... ....+.+++.+||..+|.+||++.++.+.+..+.
T Consensus 221 ~~~~~~~~-~-------------------------~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~ 273 (284)
T 2a19_B 221 AFETSKFF-T-------------------------DLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK 273 (284)
T ss_dssp HHHHHHHH-H-------------------------HHHTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred chhHHHHH-H-------------------------HhhcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 76432210 0 000000011 1123778999999999999999999998887765
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-14 Score=137.23 Aligned_cols=114 Identities=10% Similarity=0.006 Sum_probs=71.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+|+..... .+..+| +.|||||++...... .........+++++|||||||+||+|++|+ |
T Consensus 243 ~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~----~~~~~~~~~~~~~~DvwSlG~il~elltg~~P 312 (377)
T 3byv_A 243 GGVFLTGFEHLVRDGAR-----VVSSVS-RGFEPPELEARRATI----SYHRDRRTLMTFSFDAWALGLVIYWIWCADLP 312 (377)
T ss_dssp CCEEECCGGGCEETTCE-----EECCCC-TTCCCHHHHHHHTST----HHHHCCEEECCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEechhheecCCc-----ccCCCC-cCccChhhhcccccc----cccccccccCChhhhHHHHHHHHHHHHHCCCC
Confidence 568999 667765543 446889 999999999333000 000001236789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|........... .... .......+.+++.+||..+|.+||++.++.+
T Consensus 313 f~~~~~~~~~~~----------~~~~---------------~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 313 ITKDAALGGSEW----------IFRS---------------CKNIPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp C------CCSGG----------GGSS---------------CCCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred Ccccccccchhh----------hhhh---------------ccCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 987654421100 0000 0111223778999999999999999887664
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-13 Score=132.65 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=76.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+|+.+..... ...+..+||+.|||||++..... ....++.++|||||||+||||++|+
T Consensus 211 ~g~vkL~DFGla~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~----------~~~~~~~~~DvwSlGvil~elltG~~ 279 (437)
T 4aw2_A 211 NGHIRLADFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQAMEG----------GKGRYGPECDWWSLGVCMYEMLYGET 279 (437)
T ss_dssp TSCEEECCCTTCEECCTTSC-EECCSCCSCGGGCCHHHHHHHHT----------SCCEECTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEcchhhhhhcccCCC-cccccccCCcCeeChHHHhhccc----------CCCCCCCcCeeHHHHHHHHHHHhCCC
Confidence 4568998 66776654432 12445899999999999933211 1256889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh-hhcCccchHHHHHhhhhccCCCC--CcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGC--RPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~--r~~~~~~~~ 160 (538)
||.+.+...+. ............+ ........+.+++.++|..+|++ |+++.++.+
T Consensus 280 Pf~~~~~~~~~-----------------~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 280 PFYAESLVETY-----------------GKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp TTCCSSHHHHH-----------------HHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred CCCCCChhHHH-----------------HhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 99876544111 0000000000000 00112234788999999888877 777766554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-10 Score=104.22 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=148.9
Q ss_pred cEEEEEEc--CCEEE-EEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 254 CVTGLAVG--GGFLF-SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 254 ~V~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
...+++++ ++.++ +.+.++.|.+||..+.........+...+.++++.+++. ++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~-- 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQT-- 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCE--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEe--
Confidence 56788887 66666 446788999999766543322223335678899988654 666665 889999997653221
Q ss_pred eeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEE
Q 009274 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408 (538)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd 408 (538)
...... ......+++.++++.+++...++.|.+||..+.............+.+++++ ++++++...++.|.+||
T Consensus 101 --~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 --VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp --ECCCCS-CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred --eeecCC-cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 111111 0112245677788877777778899999876554433333333467889998 34555555678999999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcce-eeec-cccceEEEEEe--CCCEEEEEeCCC
Q 009274 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM-KSMQ-THKGSVFAVFL--EGKWLFTGGWDK 484 (538)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~-~h~~~v~~~~~--~~~~l~sgs~dg 484 (538)
............. ... ...++++++|.++++...++.|.+||..... .... .+...+.++.+ +|+++++...++
T Consensus 178 ~~~~~~~~~~~~~-~~~-p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 178 AESNNQVVLPFTD-ITA-PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TTTCCEEECCCSS-CCS-EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred cCCCceEeecccC-CCC-ceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 8876544322221 122 3347899999877777778899999965422 2222 23345667766 788888888899
Q ss_pred eEEEEecCCCe
Q 009274 485 TVSVQELAGDE 495 (538)
Q Consensus 485 ~v~iwd~~~~~ 495 (538)
.|+++++...+
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999987654
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-13 Score=129.68 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=73.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+..... ....+||+.|||||++ .+ ....++++|||||||++|+|++|+ |
T Consensus 167 ~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~p 229 (335)
T 3dls_A 167 FTIKLIDFGSAAYLERGKL---FYTFCGTIEYCAPEVL------MG--------NPYRGPELEMWSLGVTLYTLVFEENP 229 (335)
T ss_dssp SCEEECCCTTCEECCTTCC---BCEECSCGGGCCHHHH------TT--------CCBCSHHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEeecccceECCCCCc---eeccCCCccccChhhh------cC--------CCCCCCcccchhHHHHHHHHHhCCCc
Confidence 467888 56666554432 4568999999999999 43 122378899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ....+. .....+.+++.+||..+|.+||++.++.+
T Consensus 230 f~~~~~~~~~------------~~~~~~---------------~~~~~l~~li~~~L~~dP~~Rps~~ell~ 274 (335)
T 3dls_A 230 FCELEETVEA------------AIHPPY---------------LVSKELMSLVSGLLQPVPERRTTLEKLVT 274 (335)
T ss_dssp CSSGGGGTTT------------CCCCSS---------------CCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hhhHHHHHhh------------ccCCCc---------------ccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9764322100 000000 01123778999999999999999888765
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-13 Score=137.92 Aligned_cols=111 Identities=20% Similarity=0.178 Sum_probs=76.3
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++....... ....+||+.|||||++ . +.+++++|||||||++|+|++|. ||
T Consensus 187 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~----------~~~~~~~DiwslG~il~~ll~g~~pf 247 (504)
T 3q5i_A 187 NIKIVDFGLSSFFSKDYK---LRDRLGTAYYIAPEVL------K----------KKYNEKCDVWSCGVIMYILLCGYPPF 247 (504)
T ss_dssp SEEECCCTTCEECCTTSC---BCCCCSCTTTCCHHHH------T----------TCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEEECCCCEEcCCCCc---cccccCCcCCCCHHHh------c----------cCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 46888 66766654432 5578999999999998 2 35789999999999999999999 99
Q ss_pred chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.+.....+. .+.. .. ....... .......+.+++.+||..+|.+||++.++.+
T Consensus 248 ~~~~~~~~~~~i~~-~~-----~~~~~~~------------~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 248 GGQNDQDIIKKVEK-GK-----YYFDFND------------WKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp CCSSHHHHHHHHHH-CC-----CCCCHHH------------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHHHHc-CC-----CCCCccc------------cCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 876554222 0000 00 0000010 1112234788999999999999999987765
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-13 Score=125.76 Aligned_cols=113 Identities=14% Similarity=0.252 Sum_probs=76.0
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC--cc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE--QF 89 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~--pf 89 (538)
+|+. |+++...... ...||+.|||||++ .+ ...+++++|||||||++|+|++|. ||
T Consensus 160 ~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~~~~ 219 (289)
T 4fvq_A 160 IKLSDPGISITVLPKD------ILQERIPWVPPECI------EN--------PKNLNLATDKWSFGTTLWEICSGGDKPL 219 (289)
T ss_dssp EEECCCCSCTTTSCHH------HHHHTTTTSCHHHH------HC--------GGGCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred eeeccCcccccccCcc------ccCCcCcccCHHHh------CC--------CCCCCchhHHHHHHHHHHHHHcCCCCCc
Confidence 7888 4555554332 46799999999999 22 245778999999999999999966 55
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhcC
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIK 168 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~~ 168 (538)
......... . ...............+.+++.+||+.+|.+||++.++.+.+.++..+
T Consensus 220 ~~~~~~~~~---------------------~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 220 SALDSQRKL---------------------Q-FYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp TTSCHHHHH---------------------H-HHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred cccchHHHH---------------------H-HhhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 443222100 0 00000000111233588999999999999999999999999988754
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-13 Score=132.04 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=79.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++...+...........+++.|||||++ .+ ..++.++|||||||+||||+| |.
T Consensus 249 ~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~il~el~t~g~ 313 (377)
T 3cbl_A 249 KNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEAL------NY---------GRYSSESDVWSFGILLWETFSLGA 313 (377)
T ss_dssp TCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHh------cc---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 3568898 666665543222111224568899999998 22 467889999999999999999 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+.....+.. .++ ........+.+++.+||+.+|.+||+..++.+.+..+.
T Consensus 314 ~p~~~~~~~~~~~~~~~~~-------~~~-------------~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 314 SPYPNLSNQQTREFVEKGG-------RLP-------------CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp CSSTTSCHHHHHHHHHTTC-------CCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHcCC-------CCC-------------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 998754331110000000 000 00011224778999999999999999999988877654
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-13 Score=127.82 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=74.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++..... ...+||+.|||||++ .+ .....++.++|||||||+||||++|+ |
T Consensus 191 ~~~kL~DfG~a~~~~~~------~~~~gt~~y~aPE~~------~~------~~~~~~~~~~DiwslG~il~ell~g~~p 252 (348)
T 1u5q_A 191 GLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVI------LA------MDEGQYDGKVDVWSLGITCIELAERKPP 252 (348)
T ss_dssp TEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHH------HT------TSSCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeeccCceecCCC------CcccCCcceeCHhhh------cc------ccCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 568888 556665433 257899999999998 22 01256788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|......... .+. ....+ ..........+.+++.+||..+|.+||++.++.+.
T Consensus 253 ~~~~~~~~~~~~~~---------~~~~~-----------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 253 LFNMNAMSALYHIA---------QNESP-----------ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp TTTSCHHHHHHHHH---------HSCCC-----------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred CCCCChHHHHHHHH---------hcCCC-----------CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 9764332110 000 00000 00000112237789999999999999998877653
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-13 Score=124.48 Aligned_cols=110 Identities=15% Similarity=0.257 Sum_probs=71.0
Q ss_pred eeeeeccc--cccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCV--GSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+.++ +....... .....||+.|||||++ .+ ..+++++||||||+++|+|++|+ |
T Consensus 146 ~~~~l~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 206 (279)
T 3fdn_A 146 GELKIADFGWSVHAPSSR----RTDLCGTLDYLPPEMI------EG---------RMHDEKVDLWSLGVLCYEFLVGKPP 206 (279)
T ss_dssp SCEEECSCCEESCC------------CCCCTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEEeccccccCCccc----ccccCCCCCccCHhHh------cc---------CCCCccchhHhHHHHHHHHHHCCCC
Confidence 45788854 44444332 3468999999999999 44 56678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|......... .................+.+++.+||..+|.+||++.++.++
T Consensus 207 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 207 FEANTYQETY---------------------KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp TCCSSHHHHH---------------------HHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred CCCCcHHHHH---------------------HHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 9875443111 000000000001112237789999999999999999887763
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-13 Score=126.75 Aligned_cols=114 Identities=21% Similarity=0.345 Sum_probs=74.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... ......||+.|||||++ .+. ....++.++|||||||+||+|++|+ |
T Consensus 174 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~~------~~~~~~~~~Di~slG~~l~~l~~g~~p 239 (298)
T 2zv2_A 174 GHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESL------SET------RKIFSGKALDVWAMGVTLYCFVFGQCP 239 (298)
T ss_dssp SCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGC------CTT------CCCEESHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEecCCCccccccccc--cccCCcCCccccChhhh------ccC------CCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence 467888 66666654432 24568999999999998 330 0112467899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHH-HH-hhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. ..+... .. .........+.+++.+||..+|.+||++.++.+
T Consensus 240 f~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 240 FMDERIMCLH---------------------SKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SCCSSHHHHH---------------------HHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCccHHHHH---------------------HHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 9765333111 000000 00 000112234788999999999999999887654
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-13 Score=130.88 Aligned_cols=65 Identities=18% Similarity=0.378 Sum_probs=41.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...... ..+..+||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 164 ~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~p 225 (371)
T 2xrw_A 164 CTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMIKGGVL 225 (371)
T ss_dssp SCEEECCCCC-------------------CTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEEeeccccccccc---ccCCceecCCccCHHHh------cC---------CCCCchHhHHHHHHHHHHHHhCCCC
Confidence 467888 5666655332 24568999999999999 44 56789999999999999999999 9
Q ss_pred cchhhh
Q 009274 89 FTKELI 94 (538)
Q Consensus 89 f~~~~~ 94 (538)
|.+...
T Consensus 226 f~~~~~ 231 (371)
T 2xrw_A 226 FPGTDH 231 (371)
T ss_dssp SCCSSH
T ss_pred CCCCCH
Confidence 987543
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-13 Score=128.71 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=70.1
Q ss_pred eeeec--cccccccccch-----hhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 13 VAKVG--CVGSRICDKEV-----GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-----~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
..|+. |+++.+..... .......+||+.|||||++...... ...++.++|||||||++|+|++
T Consensus 152 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----------~~~~~~~~DiwslG~il~~l~~ 221 (316)
T 2ac3_A 152 PVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEE----------ASIYDKRCDLWSLGVILYILLS 221 (316)
T ss_dssp SEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHH----------HHHHTTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEccCccccccCCccccccccccccccCCcCccChHHhhccccc----------ccCCCcccccHhHHHHHHHHHH
Confidence 47888 55655432211 1113357799999999999432111 1346789999999999999999
Q ss_pred cC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHH----HHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVT----YLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|+ ||.+.......... ... ...........+. ..+..........+.+++.+||..+|.+||++.++.+
T Consensus 222 g~~pf~~~~~~~~~~~~---~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 222 GYPPFVGRCGSDCGWDR---GEA---CPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp SSCSCCCCCCSCSCC-------C---CHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCcccccccccccc---ccc---chhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 99 99875332100000 000 0000000000000 0000011122234788999999999999999888765
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-13 Score=129.99 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-c
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~-p 88 (538)
..|+. |+++.+.............||+.|||||++ .+ ..+++++|||||||+||+|+| |+ |
T Consensus 181 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~~p 245 (327)
T 2yfx_A 181 VAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAF------ME---------GIFTSKTDTWSFGVLLWEIFSLGYMP 245 (327)
T ss_dssp CEEECCCHHHHHHHC------CCGGGSCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred eEEECccccccccccccccccCCCcCCCcceeCHhHh------cC---------CCCCchhhHHHHHHHHHHHHcCCCCC
Confidence 57888 455554433322223357899999999998 22 457789999999999999999 88 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhhc
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~~ 167 (538)
|.......+. .+... . ... ........+.+++.+||..+|.+||++.++.+.+..+..
T Consensus 246 ~~~~~~~~~~~~~~~~-~-----~~~---------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 246 YPSKSNQEVLEFVTSG-G-----RMD---------------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp STTCCHHHHHHHHHTT-C-----CCC---------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhcC-C-----CCC---------------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 9865433111 00000 0 000 001112247789999999999999999999988877654
Q ss_pred C
Q 009274 168 K 168 (538)
Q Consensus 168 ~ 168 (538)
.
T Consensus 305 ~ 305 (327)
T 2yfx_A 305 D 305 (327)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=126.46 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=50.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++..... .....||+.|||||++ .+ ..+++++|||||||++|+|++|+
T Consensus 173 ~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~ 232 (339)
T 1z57_A 173 NPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVI------LA---------LGWSQPCDVWSIGCILIEYYLGFT 232 (339)
T ss_dssp CCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHH------TT---------SCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCceEeeCcccccCccc-----cccccCCccccChHHh------hC---------CCCCcchhhHHHHHHHHHHHhCCC
Confidence 4567888 555554433 3468999999999999 44 56789999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||....
T Consensus 233 pf~~~~ 238 (339)
T 1z57_A 233 VFPTHD 238 (339)
T ss_dssp SCCCSC
T ss_pred CCCCCC
Confidence 997643
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-13 Score=124.33 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=75.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++........ ......||+.|||||++ .+ ..+++++||||||+++|+|+| |+
T Consensus 150 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~llt~g~~ 213 (281)
T 3cc6_A 150 ECVKLGDFGLSRYIEDEDYY-KASVTRLPIKWMSPESI------NF---------RRFTTASDVWMFAVCMWEILSFGKQ 213 (281)
T ss_dssp TEEEECCCCGGGCC----------CCCCCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CcEEeCccCCCccccccccc-ccccCCCCcceeCchhh------cc---------CCCCchhccHHHHHHHHHHHhCCCC
Confidence 457888 556655543221 13356789999999998 22 457789999999999999999 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh-hhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+. ......... ........+.+++.+||..+|.+||++.++.+.+..+.
T Consensus 214 p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 214 PFFWLENKDVI---------------------GVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp TTTTSCGGGHH---------------------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcccCChHHHH---------------------HHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 99754333111 000000000 00111223788999999999999999999998887765
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=121.43 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=67.8
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhhee-eccccccCcchhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIR-CVSTKASDDNIAC 111 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~-~~~~~~~~~~~~~ 111 (538)
...||+.|||||++ .+ .....++.++|||||||++|+|++|+ ||.......+. .......
T Consensus 167 ~~~~t~~y~aPE~~------~~------~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~------ 228 (271)
T 3kmu_A 167 GRMYAPAWVAPEAL------QK------KPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGL------ 228 (271)
T ss_dssp TCBSCGGGSCHHHH------HS------CGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCC------
T ss_pred CccCCccccChhhh------cc------CCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCC------
Confidence 57899999999999 32 01123344799999999999999999 99865433111 0000000
Q ss_pred cchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 112 LGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
.... ......+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 229 ---------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 229 ---------------RPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp ---------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred ---------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 0000 111224788999999999999999999998887753
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-09 Score=105.23 Aligned_cols=224 Identities=9% Similarity=0.071 Sum_probs=140.2
Q ss_pred CcEEEEEEc--CCEEEEEeCC---C--cEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcC------------
Q 009274 253 DCVTGLAVG--GGFLFSSSFD---K--SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS------------ 313 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~d---g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------------ 313 (538)
..+.+++|+ |++|+.++.+ + .|.+||+.+++.......+ . +..+.|+|++..+++++..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357788998 8888887754 2 3888898888766555443 3 9999999987766555432
Q ss_pred --------------CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC-------cEEEEECCCC
Q 009274 314 --------------GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-------TIKAWSLLDG 372 (538)
Q Consensus 314 --------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-------~i~iwd~~~~ 372 (538)
...|++||+.++.....+.. . ......+++++ .++++..++ ...+|.+.++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence 25788999876543122222 1 12245788999 777776542 3344444355
Q ss_pred ceeEEecCCCCCeEEEEEeCCEEEEEecC--------CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeC
Q 009274 373 TLSCTMSGHKSAVSTLAVCNGVLYSGSRD--------GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE 444 (538)
Q Consensus 373 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (538)
+. ..+..+ ..+..+.-.++.|+.++.+ ..|.+|| +++. ..+...+...+...+.|+ ++ ++++++.
T Consensus 209 ~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~ 281 (347)
T 2gop_A 209 KE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFE 281 (347)
T ss_dssp EE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred ce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEec
Confidence 43 334334 5555552225567666644 3688888 5543 333333333344336788 88 8899999
Q ss_pred CCcEEEEeCC-cceeeeccccceEEEEEeCCCEEEEEeCCCeE-EEEecCCCe
Q 009274 445 SGSIKVWRND-KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTV-SVQELAGDE 495 (538)
Q Consensus 445 dg~i~iwd~~-~~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v-~iwd~~~~~ 495 (538)
++.+++| .. .....+..+...|.++++...++++++.++.. .+|.+. ++
T Consensus 282 ~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 282 EGSVNLY-IWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp TTEEEEE-EESSSEEEEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES-SS
T ss_pred CCcEEEE-EcCCceEEEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC-Cc
Confidence 9999998 64 22334444577888888744777788877765 777765 44
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-13 Score=131.72 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=77.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+....... .....||+.|||||++ .| ...++.++|||||||+||+|++|+
T Consensus 178 ~~~~kL~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ell~g~~ 240 (394)
T 4e7w_A 178 SGVLKLIDFGSAKILIAGEP---NVSYICSRYYRAPELI------FG--------ATNYTTNIDIWSTGCVMAELMQGQP 240 (394)
T ss_dssp TTEEEECCCTTCEECCTTCC---CCSSCSCGGGCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeeCCCcccccCCCC---CcccccCcCccCHHHH------cC--------CCCCCcHHHHHHHHHHHHHHHhCCC
Confidence 4568888 66766654432 3468999999999998 43 235789999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHh-----------------hhcCccchHHHHHhhhhccCC
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLEN-----------------KFGSEFVSLQLMFCQCLNFDP 149 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~l~~~p 149 (538)
||.+....... .+. + ....+. .+........ ........+.+++.+||..+|
T Consensus 241 pf~~~~~~~~l~~i~-~-------~~g~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP 310 (394)
T 4e7w_A 241 LFPGESGIDQLVEII-K-------VLGTPS--REQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTP 310 (394)
T ss_dssp SSCCSSHHHHHHHHH-H-------HHCCCC--HHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred CCCCCCHHHHHHHHH-H-------HhCCCC--HHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCCh
Confidence 99875433111 000 0 000000 0000000000 001122347889999999999
Q ss_pred CCCcchhhHHH
Q 009274 150 GCRPLLTNVWK 160 (538)
Q Consensus 150 ~~r~~~~~~~~ 160 (538)
.+||++.++.+
T Consensus 311 ~~R~t~~e~l~ 321 (394)
T 4e7w_A 311 SARLTAIEALC 321 (394)
T ss_dssp GGSCCHHHHHT
T ss_pred hhCCCHHHHhc
Confidence 99999887665
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-13 Score=127.98 Aligned_cols=121 Identities=17% Similarity=0.318 Sum_probs=69.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceee--eccccccccccCcchhhhhhhhhhhhc
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVE--CEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~--~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
++..|+. |+++.+.............||+.|||||++ .+.... .......++.++|||||||+||+|++|
T Consensus 162 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g 235 (313)
T 3cek_A 162 DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAI------KDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 235 (313)
T ss_dssp TTEEEECCCSSSCC--------------CCGGGCCHHHH------TTCC----------CCCHHHHHHHHHHHHHHHHHS
T ss_pred CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHH------hhcccccccccccccCCchHHHHHHHHHHHHHHhC
Confidence 4568898 566666555433334567899999999998 321110 011124678899999999999999999
Q ss_pred C-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh----hc-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK----FG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
+ ||......... ........ .+ .....+.+++.+||..+|.+||++.++.+
T Consensus 236 ~~pf~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 236 KTPFQQIINQISK-----------------------LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp SCTTTTCCSHHHH-----------------------HHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCchhhHHHHHHH-----------------------HHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 9 99754222000 00000000 00 11224788999999999999999887765
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=7e-13 Score=127.56 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=80.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++...............||+.|||||++ .+ ..++.++|||||||++|+|+| |+
T Consensus 175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~~g~~ 239 (322)
T 1p4o_A 175 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL------KD---------GVFTTYSDVWSFGVVLWEIATLAEQ 239 (322)
T ss_dssp CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHHTSCC
T ss_pred CeEEECcCccccccccccccccccCCCCCCCccChhhh------cc---------CCCCchhhHHHHHHHHHHHHhcCCC
Confidence 467888 566665544322223456889999999998 32 457789999999999999999 77
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+........ .. .........+.+++.+||..+|.+||++.++.+.+.+.+
T Consensus 240 p~~~~~~~~~~~~~~~~~-----~~---------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~ 298 (322)
T 1p4o_A 240 PYQGLSNEQVLRFVMEGG-----LL---------------DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 298 (322)
T ss_dssp TTTTSCHHHHHHHHHTTC-----CC---------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred ccccCCHHHHHHHHHcCC-----cC---------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence 998754431110000000 00 000111223778999999999999999999998887765
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-12 Score=124.89 Aligned_cols=134 Identities=13% Similarity=0.171 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhh--hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc-
Q 009274 12 SVAKVG--CVGSRICDKEVGLF--LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG- 86 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg- 86 (538)
+.+|+. |+++.+........ ....+||+.|||||++ .+.. .......+.++|||||||+||||+||
T Consensus 179 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~~---~~~~~~~~~~~DiwslG~il~el~tg~ 249 (337)
T 3mdy_A 179 GTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVL------DESL---NRNHFQSYIMADMYSFGLILWEVARRC 249 (337)
T ss_dssp SCEEECCCTTCEECC---------CCSSCSCGGGCCHHHH------TTCC---CTTCTHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhc------cccc---CCccccCccccchHHHHHHHHHHHhcc
Confidence 468888 56665544332211 1257899999999999 3300 00011122349999999999999999
Q ss_pred ---------C-ccchhhhhhee------eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCC
Q 009274 87 ---------E-QFTKELIDYIR------CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPG 150 (538)
Q Consensus 87 ---------~-pf~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (538)
+ ||......... ....... ....+..+. ....+ ..+.+++.+||+.+|.
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~--------~~l~~li~~~l~~dP~ 314 (337)
T 3mdy_A 250 VSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKL-----RPSFPNRWS--SDECL--------RQMGKLMTECWAHNPA 314 (337)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC-----CCCCCGGGG--GSHHH--------HHHHHHHHHHSCSSGG
T ss_pred CcccccccccccHhhhcCCCCchhhhHHHHhhhcc-----Cccccccch--hhHHH--------HHHHHHHHHhhhhChh
Confidence 4 55432111000 0000000 000000000 00011 1277899999999999
Q ss_pred CCcchhhHHHHHHHhhcCC
Q 009274 151 CRPLLTNVWKCIRELIIKP 169 (538)
Q Consensus 151 ~r~~~~~~~~~l~~l~~~~ 169 (538)
+||++.++.+.+.++....
T Consensus 315 ~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 315 SRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp GSCCHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhhc
Confidence 9999999999998887543
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-13 Score=128.74 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=78.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++.+..... .....||+.|||||++ .+ ...++.++|||||||+||+|++|+
T Consensus 168 ~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~ell~g~~ 230 (360)
T 3e3p_A 168 DGTLKLCDFGSAKKLSPSEP---NVAYICSRYYRAPELI------FG--------NQHYTTAVDIWSVGCIFAEMMLGEP 230 (360)
T ss_dssp TTEEEECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeeCCCceecCCCCC---cccccCCcceeCHHHH------cC--------CCCCCcHHHHHHHHHHHHHHHhCCC
Confidence 3568898 66776665432 3467899999999998 33 234789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHH-----------------HHHHHHhhhcCccchHHHHHhhhhccCCC
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK-----------------VTYLLENKFGSEFVSLQLMFCQCLNFDPG 150 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (538)
||.+............. ...+....... ...............+.+++.+||+.+|.
T Consensus 231 pf~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 304 (360)
T 3e3p_A 231 IFRGDNSAGQLHEIVRV------LGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPE 304 (360)
T ss_dssp SSCCSSHHHHHHHHHHH------HCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGG
T ss_pred CcCCCChHHHHHHHHHH------cCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCcc
Confidence 99875433111000000 00000000000 00000000011123478899999999999
Q ss_pred CCcchhhHHH
Q 009274 151 CRPLLTNVWK 160 (538)
Q Consensus 151 ~r~~~~~~~~ 160 (538)
+||++.++.+
T Consensus 305 ~Rpt~~e~l~ 314 (360)
T 3e3p_A 305 ERMKPYEALC 314 (360)
T ss_dssp GSCCHHHHTT
T ss_pred ccCCHHHHhc
Confidence 9999887665
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-13 Score=126.91 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=69.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-+|+. |+++....... ......||+.|||||++ .| ...++.++|||||||++|+|++|+ |
T Consensus 137 ~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~p 200 (324)
T 3mtl_A 137 GELKLADFGLARAKSIPTK--TYDNEVVTLWYRPPDIL------LG--------STDYSTQIDMWGVGCIFYEMATGRPL 200 (324)
T ss_dssp CCEEECSSSEEECC--------------CGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEccCcccccccCCcc--ccccccCcccccChhhh------cC--------CCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 457888 55555543322 25568999999999998 33 245788999999999999999999 9
Q ss_pred cchhhhhhee-e----ccccccCcchhhcchhhHHHHHHHHH---------HHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 89 FTKELIDYIR-C----VSTKASDDNIACLGMYMAWMEKVTYL---------LENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 89 f~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
|.+....... . +...... .+........ .... .....+.....+.+++.+||..+|.+||+
T Consensus 201 f~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t 275 (324)
T 3mtl_A 201 FPGSTVEEQLHFIFRILGTPTEE----TWPGILSNEE-FKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRIS 275 (324)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCTT----TSTTGGGCHH-HHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred CCCCCHHHHHHHHHHHhCCCChH----hchhhhcchh-hcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCC
Confidence 9875443111 0 0000000 0000000000 0000 00001112234788999999999999999
Q ss_pred hhhHHH
Q 009274 155 LTNVWK 160 (538)
Q Consensus 155 ~~~~~~ 160 (538)
+.++.+
T Consensus 276 ~~e~l~ 281 (324)
T 3mtl_A 276 AEDAMK 281 (324)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 887665
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.7e-13 Score=127.13 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=73.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++.+.............||+.|+|||++ .+ ..+++++||||||+++|+|++ |.
T Consensus 184 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~~g~~ 248 (313)
T 3brb_A 184 MTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL------AD---------RVYTSKSDVWAFGVTMWEIATRGMT 248 (313)
T ss_dssp SCEEECSCSCC----------------CCGGGSCHHHH------HS---------SCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CcEEEeecCcceecccccccCcccccCCCccccCchhh------cC---------CCccchhhhHHHHHHHHHHHhcCCC
Confidence 357888 566666544332223457789999999999 33 567889999999999999999 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+........ .. .........+.+++.+||..+|.+||++.++.+.+..+.
T Consensus 249 p~~~~~~~~~~~~~~~~~-----~~---------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~ 307 (313)
T 3brb_A 249 PYPGVQNHEMYDYLLHGH-----RL---------------KQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL 307 (313)
T ss_dssp SSTTCCGGGHHHHHHTTC-----CC---------------CCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHcCC-----CC---------------CCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 997754331110000000 00 000111224788999999999999999999999888765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-08 Score=93.19 Aligned_cols=234 Identities=10% Similarity=0.069 Sum_probs=147.2
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (538)
.+...+.+++++ +..+++...++.|..||.+ ++. ..+. .....+.++++.++ +.++++...++.|..||. ++
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TC
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CC
Confidence 455678999997 6666666668899999986 333 3333 34567899999875 457777777889999987 32
Q ss_pred CCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CC-EEEEEecCC
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NG-VLYSGSRDG 402 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~-~l~s~s~dg 402 (538)
.. ...............++.++++..++...++.|..||. +++.... +..+...+.+++++ ++ +.++...++
T Consensus 130 ~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 130 KI----REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp CE----EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CE----EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence 21 11111111112234466777877777667789999998 6665433 33445668899998 34 545555678
Q ss_pred cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeee--ccccceEEEEEe-CCCEEEE
Q 009274 403 TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL-EGKWLFT 479 (538)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~h~~~v~~~~~-~~~~l~s 479 (538)
.|..||. +++... +...........++++++|++.++...++.|..||.......+ ..+...+.++.+ ++++.++
T Consensus 205 ~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~ 282 (299)
T 2z2n_A 205 KIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFA 282 (299)
T ss_dssp EEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEE
T ss_pred eEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEE
Confidence 9999999 666433 3222112223346889999877666678899999965433333 233455666655 5555444
Q ss_pred EeCCCeEEEEecCCCe
Q 009274 480 GGWDKTVSVQELAGDE 495 (538)
Q Consensus 480 gs~dg~v~iwd~~~~~ 495 (538)
. ..+.+..++..+.+
T Consensus 283 ~-~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 M-ECDKIGKLTLIKDN 297 (299)
T ss_dssp E-TTTEEEEEEEC---
T ss_pred e-cCCcEEEEEcCccc
Confidence 4 46778788876654
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.30 E-value=8.6e-13 Score=133.11 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=82.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++.+.+.... ......||+.|||||++ .+ ..++.++|||||||+||||+| |+
T Consensus 320 ~~~~kl~DFG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~~l~el~t~g~ 383 (454)
T 1qcf_A 320 SLVCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEAI------NF---------GSFTIKSDVWSFGILLMEIVTYGR 383 (454)
T ss_dssp TCCEEECSTTGGGGBCCHHHH-TTCSSSSCGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEeeCCCceEcCCCcee-ccCCCcccccccCHHHh------cc---------CCCCcHHHHHhHHHHHHHHHhCCC
Confidence 3568998 677776654322 23456788999999998 22 557899999999999999999 99
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.....+. ..+....... .......+.+++.+||..+|.+||+..++.+.+..+
T Consensus 384 ~P~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~ 442 (454)
T 1qcf_A 384 IPYPGMSNPEVI---------------------RALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 442 (454)
T ss_dssp CSSTTCCHHHHH---------------------HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 99875433111 0000000000 011223478899999999999999999999888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 443 ~ 443 (454)
T 1qcf_A 443 Y 443 (454)
T ss_dssp S
T ss_pred H
Confidence 5
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-13 Score=130.74 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=71.1
Q ss_pred eeeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
+..+|+. |+++......... ......||+.|||||++ .+ ..+++++|||||||+||||++ |
T Consensus 183 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~SlG~il~ellt~g 247 (373)
T 2qol_A 183 NLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAI------AY---------RKFTSASDVWSYGIVLWEVMSYG 247 (373)
T ss_dssp TCCEEECCC----------------------CTTSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEECcCccccccccCCccceeccCCCcCCCccChhhh------cc---------CCcCchhcHHHHHHHHHHHHhCC
Confidence 3568888 6677666543221 12235678899999998 22 457789999999999999998 9
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.......+. .+. . ....+ ........+.+++.+||+.+|.+||+..++.+.+.+
T Consensus 248 ~~P~~~~~~~~~~~~i~---~-----~~~~~-------------~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~ 306 (373)
T 2qol_A 248 ERPYWEMSNQDVIKAVD---E-----GYRLP-------------PPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDK 306 (373)
T ss_dssp -CTTTTCCHHHHHHHHH---T-----TEECC-------------CCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH---c-----CCCCC-------------CCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHH
Confidence 9 99765433111 000 0 00000 000122347889999999999999999999999888
Q ss_pred hhcCC
Q 009274 165 LIIKP 169 (538)
Q Consensus 165 l~~~~ 169 (538)
+...+
T Consensus 307 ~~~~~ 311 (373)
T 2qol_A 307 LIRNP 311 (373)
T ss_dssp HHHCG
T ss_pred HHhCc
Confidence 87543
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-13 Score=131.28 Aligned_cols=111 Identities=10% Similarity=-0.032 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeecc-ccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEE-SEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~-~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+.+|+. |+++..... ....+| +.|||||++...... ... ....++.++|||||||+||+|+||+
T Consensus 248 ~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~------~~~~~~~~~~~~~DvwSlGvil~elltg~~ 315 (413)
T 3dzo_A 248 GGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLP------FGQHHPTLMTFAFDTWTLGLAIYWIWCADL 315 (413)
T ss_dssp CCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTST------TGGGCCEEECHHHHHHHHHHHHHHHHHSSC
T ss_pred CeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccc------cccccCcCCCchhhHHHHHHHHHHHHHCCC
Confidence 348999 666666544 456899 999999999433100 000 2356788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~ 159 (538)
||............ ... .......+.+++.+||..+|.+||++.++.
T Consensus 316 Pf~~~~~~~~~~~~---------~~~----------------~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 316 PNTDDAALGGSEWI---------FRS----------------CKNIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp CCCTTGGGSCSGGG---------GSS----------------CCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CCCCcchhhhHHHH---------Hhh----------------cccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 99876554221000 000 001112377899999999999999987654
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-13 Score=123.00 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=79.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++..|+. |+++....... .......||+.|+|||++ .+ ..+++++||||||+++|+|++ |+
T Consensus 140 ~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~~g~ 203 (267)
T 3t9t_A 140 NQVIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVF------SF---------SRYSSKSDVWSFGVLMWEVFSEGK 203 (267)
T ss_dssp GGCEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEcccccccccccccc-cccccccccccccChhhh------cC---------CCccchhchhhhHHHHHHHhccCC
Confidence 3457888 55565543322 223457889999999998 22 456789999999999999999 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.... .. .........+.+++.+||..+|.+||++.++.+.+.++
T Consensus 204 ~p~~~~~~~~~~~~i~~~~--------~~-------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l 262 (267)
T 3t9t_A 204 IPYENRSNSEVVEDISTGF--------RL-------------YKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262 (267)
T ss_dssp CTTTTCCHHHHHHHHHTTC--------CC-------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhcCC--------cC-------------CCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 99875433111 000000 00 00001122377899999999999999999999988876
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 263 ~ 263 (267)
T 3t9t_A 263 A 263 (267)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-13 Score=131.42 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=56.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++...... .....||+.|||||++ .+ ..+++++|||||||++|+|++|+
T Consensus 167 ~~~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~ 227 (336)
T 3fhr_A 167 DAVLKLTDFGFAKETTQNA----LQTPCYTPYYVAPEVL------GP---------EKYDKSCDMWSLGVIMYILLCGFP 227 (336)
T ss_dssp TCCEEECCCTTCEEC-----------------------------------------CHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CceEEEeccccceeccccc----cccCCCCcCccChhhh------CC---------CCCCchhhHHHHHHHHHHHHHCCC
Confidence 3457888 5566555432 4568999999999998 33 56778999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.......+.. .............+..........+.+++.+||..+|.+||++.++.+
T Consensus 228 pf~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 228 PFYSNTGQAISP-------------GMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp CC----------------------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCccchhhhh-------------hHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 998764442110 000000000000000011122234788999999999999999988776
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-13 Score=124.24 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=79.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++........ ......||+.|||||++ .+ ..+++++||||||+++|+|+| |+
T Consensus 157 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~~l~~l~t~g~~ 220 (283)
T 3gen_A 157 GVVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVL------MY---------SKFSSKSDIWAFGVLMWEIYSLGKM 220 (283)
T ss_dssp SCEEECSTTGGGGBCCHHHH-STTSTTSCGGGCCHHHH------HH---------CCCSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEccccccccccccccc-cccCCccCcccCCHHHh------cc---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 566666544322 23457788999999998 32 457789999999999999999 99
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......... .+........ ......+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 221 p~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 221 PYERFTNSETAE---------------------HIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp TTTTSCHHHHHH---------------------HHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CccccChhHHHH---------------------HHhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 998754331110 0000000000 011123778999999999999999999998887765
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=125.44 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=74.9
Q ss_pred eeeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
+...|+. |+++.+....... ......||+.|||||++ .+ ..++.++|||||||+||+|++ |
T Consensus 183 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g 247 (333)
T 1mqb_A 183 NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI------SY---------RKFTSASDVWSFGIVMWEVMTYG 247 (333)
T ss_dssp TCCEEECCCCC-----------------CCCGGGSCHHHH------HS---------CCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCcEEECCCCcchhhccccccccccCCCCccccccCchhc------cc---------CCCCchhhhHHHHHHHHHHHcCC
Confidence 3467888 5566665433221 12345678999999998 33 567889999999999999999 9
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.......+. .+.. . ...+ ........+.+++.+||+.+|.+||+..++.+.+.+
T Consensus 248 ~~pf~~~~~~~~~~~~~~--~------~~~~-------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~ 306 (333)
T 1mqb_A 248 ERPYWELSNHEVMKAIND--G------FRLP-------------TPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 306 (333)
T ss_dssp CCTTTTCCHHHHHHHHHT--T------CCCC-------------CCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHC--C------CcCC-------------CcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 9 99764333111 0000 0 0000 000112247889999999999999999999998888
Q ss_pred hhcC
Q 009274 165 LIIK 168 (538)
Q Consensus 165 l~~~ 168 (538)
+...
T Consensus 307 ~~~~ 310 (333)
T 1mqb_A 307 LIRA 310 (333)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 7644
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-09 Score=116.29 Aligned_cols=194 Identities=10% Similarity=0.001 Sum_probs=125.4
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcC----CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc--
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDS----GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT-- 363 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-- 363 (538)
+|...+.+++|||++..++++.+. +..|++||+.++...... ..... .....+|++||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~----~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG----KYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC----TTCCCEECTTSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc----cccceEEecCCCEEEEEEecCCCC
Confidence 355678999999987766555443 468999999987643110 11111 0024589999999999988776
Q ss_pred -----------EEEEECCCCc----eeEEecCCCCCeEEEEEe--CCEEEEEecCC----cEEEEECCCCceeEEEecCC
Q 009274 364 -----------IKAWSLLDGT----LSCTMSGHKSAVSTLAVC--NGVLYSGSRDG----TIRLWSLSDHSLLTVLEEDS 422 (538)
Q Consensus 364 -----------i~iwd~~~~~----~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~ 422 (538)
|++|++.+++ ++.....|...+.++.|+ +++|+.++.++ .|.+||..+++. ..+..+.
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~ 271 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV 271 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC
Confidence 9999998876 333334566788899999 44677666555 677777655543 3343333
Q ss_pred CCceEEEEEEcCCCCEEEEEe---CCCcEEEEeCCcc----eeeeccc--cceEEEEEe-CCCEEEEEeCCCeEEEEecC
Q 009274 423 SGAVSSVLSLTAVQHTLVVSH---ESGSIKVWRNDKF----MKSMQTH--KGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~----~~~~~~h--~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~ 492 (538)
... ... .+ +++.+++.+. .++.|.+||.... ...+..| ...+..+++ ++.++++...|+..++|.+.
T Consensus 272 ~~~-~~~-~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 272 GAK-YEV-HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp SCC-EEE-EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred Cce-EEE-Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 333 222 33 5566444443 2578999996542 2344333 445777776 77788888999988888654
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-13 Score=125.16 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=79.6
Q ss_pred eeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 12 SVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..|+. |+++.+....... ......||+.|||||++ .+ ..+++++||||||+++|+|+| |+
T Consensus 147 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~ 211 (287)
T 1u59_A 147 HYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI------NF---------RKFSSRSDVWSYGVTMWEALSYGQ 211 (287)
T ss_dssp TEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTSC
T ss_pred CCEEECcccceeeeccCcceeeccccccccccccCHHHh------cc---------CCCCchhhHHHHHHHHHHHHcCCC
Confidence 467888 5566654332211 12346789999999998 22 457789999999999999999 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.. . ..+ .........+.+++.+||..+|.+||++.++.+.+..+
T Consensus 212 ~p~~~~~~~~~~~~i~~-~--------~~~------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 212 KPYKKMKGPEVMAFIEQ-G--------KRM------------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp CTTTTCCTHHHHHHHHT-T--------CCC------------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHhc-C--------CcC------------CCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 99865333111 0000 0 000 00011223478899999999999999999999988887
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 271 ~ 271 (287)
T 1u59_A 271 Y 271 (287)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=126.64 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=45.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++........ ....+||+.|||||++ .+ ...+++++|||||||++|+|++|+
T Consensus 173 ~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~ 236 (329)
T 3gbz_A 173 TPVLKIGDFGLARAFGIPIRQ--FTHEIITLWYRPPEIL------LG--------SRHYSTSVDIWSIACIWAEMLMKTP 236 (329)
T ss_dssp CCEEEECCTTHHHHHC-------------CCTTCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred cceEEECcCCCccccCCcccc--cCCCcCCccccCHHHh------cC--------CCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3457888 556665533222 4568899999999999 33 234789999999999999999999
Q ss_pred ccchhhh
Q 009274 88 QFTKELI 94 (538)
Q Consensus 88 pf~~~~~ 94 (538)
||.....
T Consensus 237 pf~~~~~ 243 (329)
T 3gbz_A 237 LFPGDSE 243 (329)
T ss_dssp SSCCSSH
T ss_pred CcCCCCH
Confidence 9987533
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-13 Score=129.24 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=82.2
Q ss_pred eeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..|+. |+++........ .......||+.|||||++ .+ ..+++++|||||||++|+|++|.
T Consensus 164 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~ll~g~~ 228 (327)
T 3lxl_A 164 AHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESL------SD---------NIFSRQSDVWSFGVVLYELFTYCD 228 (327)
T ss_dssp TEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTTC
T ss_pred CCEEEcccccceecccCCccceeeccCCccccccCHHHh------cc---------CCCChHHhHHHHHHHHHHHHhCCC
Confidence 457888 556655433221 123357799999999998 32 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-----cCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-----GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||............ .......... ......... ......+.+++.+||+.+|.+||++.++.+.+
T Consensus 229 p~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L 298 (327)
T 3lxl_A 229 KSCSPSAEFLRMMG---------CERDVPALSR-LLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQL 298 (327)
T ss_dssp GGGSHHHHHHHHCC-------------CCHHHH-HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred CCccccchhhhhcc---------cccccccHHH-HHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence 98875443111000 0000111111 111111111 12223488999999999999999999999988
Q ss_pred HHhhc
Q 009274 163 RELII 167 (538)
Q Consensus 163 ~~l~~ 167 (538)
..++.
T Consensus 299 ~~~~~ 303 (327)
T 3lxl_A 299 DMLWS 303 (327)
T ss_dssp HHC--
T ss_pred HHHHh
Confidence 88763
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-13 Score=128.99 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=76.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++..... .+..+||+.|||||++ .+ ...++.++|||||||++|+|++|+ |
T Consensus 165 ~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~p 225 (367)
T 1cm8_A 165 CELKILDFGLARQADSE-----MTGYVVTRWYRAPEVI------LN--------WMRYTQTVDIWSVGCIMAEMITGKTL 225 (367)
T ss_dssp CCEEECCCTTCEECCSS-----CCSSCSCGGGCCTHHH------HT--------TTCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEeeecccccccc-----cCcCcCCCCcCCHHHH------hC--------CCCCChhhhHHHHHHHHHHHHhCCCC
Confidence 467888 666765543 4568999999999998 22 245789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHH---------HHHHHHHHHh-------hhcCccchHHHHHhhhhccCCCCC
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAW---------MEKVTYLLEN-------KFGSEFVSLQLMFCQCLNFDPGCR 152 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-------~~~~~~~~l~~~~~~~l~~~p~~r 152 (538)
|.+.....+.....+. ...++... .......+.. ........+.+++.+||..+|.+|
T Consensus 226 f~~~~~~~~l~~i~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R 299 (367)
T 1cm8_A 226 FKGSDHLDQLKEIMKV------TGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQR 299 (367)
T ss_dssp SCCSSHHHHHHHHHHH------HCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTS
T ss_pred CCCCCHHHHHHHHHHh------cCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHC
Confidence 9875433111000000 00000000 0000000000 001122347889999999999999
Q ss_pred cchhhHHH
Q 009274 153 PLLTNVWK 160 (538)
Q Consensus 153 ~~~~~~~~ 160 (538)
|++.++.+
T Consensus 300 ~t~~e~l~ 307 (367)
T 1cm8_A 300 VTAGEALA 307 (367)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHhc
Confidence 99887665
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-13 Score=127.67 Aligned_cols=120 Identities=20% Similarity=0.374 Sum_probs=69.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++....... ......||+.|+|||++ .+ ..++.++||||||+++|+|++|.
T Consensus 172 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~ 234 (310)
T 2wqm_A 172 TGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERI------HE---------NGYNFKSDIWSLGCLLYEMAALQS 234 (310)
T ss_dssp TSCEEECCC--------------------CCSSCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeccceeeecCCCc--cccccCCCeeEeChHHh------CC---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 3467888 45565554332 24467899999999998 43 56788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHH--HHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+....... . ...+... +..........+.+++.+||..+|.+||++.++.+.+.++
T Consensus 235 p~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l 295 (310)
T 2wqm_A 235 PFYGDKMNLYS---------------L----CKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRM 295 (310)
T ss_dssp TTC---CCHHH---------------H----HHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCcccchhHHH---------------H----HHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 99764222000 0 0000000 0000011122478899999999999999999999888877
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 296 ~ 296 (310)
T 2wqm_A 296 H 296 (310)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-12 Score=124.75 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=75.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...............||+.|+|||++ .+ .....+.++||||||+++|+|++|+ |
T Consensus 146 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~-------~~~~~~~~~Di~slG~il~~l~~g~~p 212 (305)
T 2wtk_C 146 GTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIA------NG-------LDTFSGFKVDIWSAGVTLYNITTGLYP 212 (305)
T ss_dssp CCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHH------TC-------CSCEESHHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEeeccccccccCccccccccccCCCCCCCcChhhc------cC-------cccCCcchhhHHHHHHHHHHHHhCCCC
Confidence 456787 555555432222224467899999999998 33 1233467999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|.......+. ..+..............+.+++.+||..+|.+||++.++.+.
T Consensus 213 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 213 FEGDNIYKLF---------------------ENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp CCCSSHHHHH---------------------HHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred CCCchHHHHH---------------------HHHhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 9875433111 000000000001122347889999999999999999887753
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-13 Score=129.83 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred eeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccc-cccCcchhhhhhhhhhhhcC-cc
Q 009274 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSV-GYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~-~~~sDi~slG~~l~~lltg~-pf 89 (538)
.|+. |+|+....... ....+||+.|||||++ .+ ..+ +.++|||||||+||+|++|+ ||
T Consensus 157 ~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~~DiwslG~il~ell~g~~Pf 218 (361)
T 3uc3_A 157 LKICDFGYSKSSVLHSQ---PKSTVGTPAYIAPEVL------LR---------QEYDGKIADVWSCGVTLYVMLVGAYPF 218 (361)
T ss_dssp EEECCCCCC------------------CTTSCHHHH------HC---------SSCCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred EEEeecCccccccccCC---CCCCcCCCCcCChhhh------cC---------CCCCCCeeeeehhHHHHHHHHhCCCCC
Confidence 7888 55554333222 4467899999999998 33 333 34599999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-----hcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-----FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
......... . .....+.... .......+.+++.+||..+|.+||++.++.++
T Consensus 219 ~~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 219 EDPEEPRDY-------------R-------KTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp C----CCCH-------------H-------HHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred CCCccHHHH-------------H-------HHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 875332100 0 0000000000 00112347789999999999999999887653
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-13 Score=124.39 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=73.0
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.+ +++....... ......||+.|||||++ .+ ..++.++||||||+++|+|++|+ |
T Consensus 153 ~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 215 (279)
T 2w5a_A 153 QNVKLGDFGLARILNHDTS--FAKTFVGTPYYMSPEQM------NR---------MSYNEKSDIWSLGCLLYELCALMPP 215 (279)
T ss_dssp SCEEECCCCHHHHC---CH--HHHHHHSCCTTCCHHHH------HC---------C-CCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEecCchheeeccccc--cccccCCCccccChHHh------cc---------CCCCchhhHHHHHHHHHHHHHCCCC
Confidence 4578884 4555543322 24468899999999998 33 45778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. ..+........+ .....+.+++.+||..+|.+||++.++.+
T Consensus 216 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~ 267 (279)
T 2w5a_A 216 FTAFSQKELA---------------------GKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE 267 (279)
T ss_dssp SCCSSHHHHH---------------------HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CcccCHHHHH---------------------HHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 9875433111 000000000001 11234788999999999999999887765
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-13 Score=123.29 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=78.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++...+.... ......||+.|||||++ .+ ..+++++||||||+++|+|+| |+
T Consensus 141 ~~~~l~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~~g~~ 204 (268)
T 3sxs_A 141 LCVKVSDFGMTRYVLDDQYV-SSVGTKFPVKWSAPEVF------HY---------FKYSSKSDVWAFGILMWEVFSLGKM 204 (268)
T ss_dssp CCEEECCTTCEEECCTTCEE-ECCSCCCCGGGCCHHHH------HH---------SEEETTHHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEccCccceecchhhhh-cccCCCcCcccCCHHHH------hc---------cCCchhhhhHHHHHHHHHHHcCCCC
Confidence 457888 455555443221 13356778899999998 32 457789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||......... .+..... ... .......+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 205 p~~~~~~~~~~~~~~~~~~-----~~~----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (268)
T 3sxs_A 205 PYDLYTNSEVVLKVSQGHR-----LYR----------------PHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLR 263 (268)
T ss_dssp TTTTSCHHHHHHHHHTTCC-----CCC----------------CTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGC
T ss_pred CccccChHHHHHHHHcCCC-----CCC----------------CCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 99865433111 0000000 000 0011123778999999999999999999998877664
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=123.99 Aligned_cols=130 Identities=16% Similarity=0.101 Sum_probs=77.7
Q ss_pred eeeeeecc--ccccccccc---hhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 11 KSVAKVGC--VGSRICDKE---VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~---~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
++..|+.+ +++...... .........||+.|||||++ .+...+.......+++++|||||||++|+|++
T Consensus 165 ~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~------~~~~~~~~~~~~~~~~~~Di~slG~il~el~~ 238 (319)
T 2y4i_B 165 NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEII------RQLSPDTEEDKLPFSKHSDVFALGTIWYELHA 238 (319)
T ss_dssp --CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHH------SCBSCC--CCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecCCccccccccccccccccccCCCcccccChHHh------hhccccccccccCCCchhhHHHHHHHHHHHHh
Confidence 45678884 444432211 11113346799999999999 43222122223457889999999999999999
Q ss_pred cC-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 86 GE-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 86 g~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
|+ ||.......+. .+.... .+..........+.+++.+||..+|.+||++.++.+.+.
T Consensus 239 g~~p~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~ 298 (319)
T 2y4i_B 239 REWPFKTQPAEAIIWQMGTGM--------------------KPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLE 298 (319)
T ss_dssp SSCSSSSCCHHHHHHHHHTTC--------------------CCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHhccCC--------------------CCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 99 99875443111 000000 000000012234888999999999999999999988877
Q ss_pred Hhh
Q 009274 164 ELI 166 (538)
Q Consensus 164 ~l~ 166 (538)
.+.
T Consensus 299 ~l~ 301 (319)
T 2y4i_B 299 KLP 301 (319)
T ss_dssp TC-
T ss_pred HHH
Confidence 664
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-13 Score=133.69 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=54.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++.+...... .....+||+.|||||++....... ....++.++|+|||||++|||++|+ |
T Consensus 199 g~vkL~DFGla~~~~~~~~~-~~~~~~Gt~~Y~APE~l~~~~~~~--------~~~~~~~~~DiwSlGvilyelltG~~P 269 (412)
T 2vd5_A 199 GHIRLADFGSCLKLRADGTV-RSLVAVGTPDYLSPEILQAVGGGP--------GTGSYGPECDWWALGVFAYEMFYGQTP 269 (412)
T ss_dssp SCEEECCCTTCEECCTTSCE-ECSSCCSCGGGCCHHHHHHHHTCT--------TCSEECTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeechhheeccCCCcc-ccceeccccCcCCHHHHhhcccCc--------CCCCCChHHhhhHHhHHHHHHHhCCCC
Confidence 567888 677776544321 133589999999999994432211 1256789999999999999999999 9
Q ss_pred cchhhhh
Q 009274 89 FTKELID 95 (538)
Q Consensus 89 f~~~~~~ 95 (538)
|.+.+..
T Consensus 270 f~~~~~~ 276 (412)
T 2vd5_A 270 FYADSTA 276 (412)
T ss_dssp TCCSSHH
T ss_pred CCCCCHH
Confidence 9876544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-09 Score=110.64 Aligned_cols=270 Identities=13% Similarity=0.071 Sum_probs=169.4
Q ss_pred eeEEeecCCeEEEEEeecCCCc----------E-EEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecC--Cc---CeE
Q 009274 233 DLVNGLSKGNVKFKDLQGHRDC----------V-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGH--DH---KVM 296 (538)
Q Consensus 233 ~~~~~~~~~~~~i~~l~~h~~~----------V-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~---~v~ 296 (538)
.++.-.......+|.+..+... + ..+++.++.++.++.|+.|..+|..+|+.+..+... .. .+.
T Consensus 81 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~ 160 (689)
T 1yiq_A 81 VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTIT 160 (689)
T ss_dssp CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCC
T ss_pred eEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCcccc
Confidence 3444444444567877644321 1 234556889999999999999999999999888753 11 111
Q ss_pred -EEEEecCCCCEEEEEc-----CCCcEEEEEccCCCCCcceeeecccC--------------------------Cceeee
Q 009274 297 -AVVYVDEDQPLCISGD-----SGGGIFVWSFSFPLGHEPLKKWNEEK--------------------------DWRYSG 344 (538)
Q Consensus 297 -~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 344 (538)
+.... ++.+++..+ .+|.|+.||..+++............ ......
T Consensus 161 ~sP~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~ 238 (689)
T 1yiq_A 161 GAPRVV--NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWD 238 (689)
T ss_dssp SCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCS
T ss_pred CCcEEE--CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCcccc
Confidence 11111 333333222 37899999999887544333210000 000012
Q ss_pred EEEEeecCCEEEEeeCCCc-------------------EEEEECCCCceeEEecC--CC-------CCeE--EEEEeCC-
Q 009274 345 IHALTTSGRYLYTGSGDRT-------------------IKAWSLLDGTLSCTMSG--HK-------SAVS--TLAVCNG- 393 (538)
Q Consensus 345 ~~~~~~~~~~l~sg~~dg~-------------------i~iwd~~~~~~~~~~~~--h~-------~~v~--~l~~~~~- 393 (538)
..++.++.+.++.++.++. |..+|..+|+.++.+.. |. .+.. .+.+.+.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 3467777888998888764 99999999999998754 21 1111 2222232
Q ss_pred --EEEEEecCCcEEEEECCCCceeEEEecCCCCce-------------------------------------EEEEEEcC
Q 009274 394 --VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV-------------------------------------SSVLSLTA 434 (538)
Q Consensus 394 --~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~ 434 (538)
.++.++.+|.++++|.++|+.+........... ...++++|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 788999999999999999998755432210000 00147788
Q ss_pred CCCEEEEEeC---------------------------------------------CCcEEEEeCC--cceeeeccccceE
Q 009274 435 VQHTLVVSHE---------------------------------------------SGSIKVWRND--KFMKSMQTHKGSV 467 (538)
Q Consensus 435 ~~~~l~~~~~---------------------------------------------dg~i~iwd~~--~~~~~~~~h~~~v 467 (538)
+..++++... +|.|+.||.. +.+..+..+....
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~ 478 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN 478 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Confidence 8888877632 3678899954 3444444333221
Q ss_pred E-EEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCC
Q 009274 468 F-AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG 504 (538)
Q Consensus 468 ~-~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 504 (538)
. .+...+.+++.|+.||.++.||.++++.........
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 1 344578899999999999999999999887766543
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.2e-13 Score=127.45 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=75.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++....... .....||+.|||||++... ....++.++|||||||+||+|++|+ |
T Consensus 154 ~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------------~~~~~~~~~Di~slG~il~~l~~g~~p 218 (322)
T 2ycf_A 154 CLIKITDFGHSKILGETSL---MRTLCGTPTYLAPEVLVSV------------GTAGYNRAVDCWSLGVILFICLSGYPP 218 (322)
T ss_dssp CCEEECCCTTCEECCCCHH---HHHHHSCCTTCCHHHHHHT------------TTTTCTTHHHHHHHHHHHHHHHHSSCS
T ss_pred CeEEEccCccceecccccc---cccccCCcCccCchhhccC------------CCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 357888 56666654422 4568899999999998221 1245778999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ... ........ +.. .......+.+++.+||..+|.+||++.++.+
T Consensus 219 f~~~~~~~~~~~~~---------~~~~~~~~----~~~----~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 219 FSEHRTQVSLKDQI---------TSGKYNFI----PEV----WAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp SCSTTCSSCHHHHH---------HHTCCCCC----HHH----HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CcccchHHHHHHHH---------HhCccccC----chh----hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 9765332100 000 00000000 000 0112234788999999999999999887654
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-12 Score=125.30 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=76.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... ..+..+||+.|||||++ .+ ...++.++|||||||+||+|++|. |
T Consensus 149 ~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~~ 212 (346)
T 1ua2_A 149 GVLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELL------FG--------ARMYGVGVDMWAVGCILAELLLRVPF 212 (346)
T ss_dssp CCEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHH------TT--------CSCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEecccceeccCCcc--cCCcccccccccCchHh------hC--------CCCCCchhhhHhHHHHHHHHHHCCCC
Confidence 467888 56666654332 24568999999999998 33 234778999999999999999999 8
Q ss_pred cchhhhhhee-e-cc---cccc--Ccch-------hhc-chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCc
Q 009274 89 FTKELIDYIR-C-VS---TKAS--DDNI-------ACL-GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP 153 (538)
Q Consensus 89 f~~~~~~~~~-~-~~---~~~~--~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~ 153 (538)
|.+....... . +. .... +... ... .+...+.. ........+.+++.+||..+|.+||
T Consensus 213 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~li~~~L~~dP~~Rp 284 (346)
T 1ua2_A 213 LPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHH--------IFSAAGDDLLDLIQGLFLFNPCARI 284 (346)
T ss_dssp SCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHH--------HCTTCCHHHHHHHHHHHCSSTTTSC
T ss_pred CCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHH--------hhccCCHHHHHHHHHHhccChhhCC
Confidence 8765433111 0 00 0000 0000 000 00000000 0011123478899999999999999
Q ss_pred chhhHHH
Q 009274 154 LLTNVWK 160 (538)
Q Consensus 154 ~~~~~~~ 160 (538)
++.++.+
T Consensus 285 t~~ell~ 291 (346)
T 1ua2_A 285 TATQALK 291 (346)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9888765
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-13 Score=128.13 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=62.3
Q ss_pred eeeeec--cccccccccchhh----------hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhh
Q 009274 12 SVAKVG--CVGSRICDKEVGL----------FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACI 79 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~----------~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~ 79 (538)
+.+|+. |+++......... ......||+.|||||++ .+ .....+++++|||||||+
T Consensus 175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~------~~~~~~~~~~Dv~slG~i 242 (337)
T 3ll6_A 175 GTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII------DL------YSNFPIGEKQDIWALGCI 242 (337)
T ss_dssp SCEEBCCCTTCBCCSSCC-------------------------------------C------CTTSCSSHHHHHHHHHHH
T ss_pred CCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhh------hc------cccCCCChHHhHHHHHHH
Confidence 457888 5555554332110 01246799999999998 21 123567789999999999
Q ss_pred hhhhhhcC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 80 LLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 80 l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
||+|+||+ ||.......+.... .. ..........+.+++.+||+.+|.+||++.++
T Consensus 243 l~el~~g~~p~~~~~~~~~~~~~----------~~-------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~ 299 (337)
T 3ll6_A 243 LYLLCFRQHPFEDGAKLRIVNGK----------YS-------------IPPHDTQYTVFHSLIRAMLQVNPEERLSIAEV 299 (337)
T ss_dssp HHHHHHSSCCC----------------------CC-------------CCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHH
T ss_pred HHHHHhCCCCCcchhHHHhhcCc----------cc-------------CCcccccchHHHHHHHHHccCChhhCcCHHHH
Confidence 99999999 99865433211000 00 00011122347789999999999999999999
Q ss_pred HHHHHHhh
Q 009274 159 WKCIRELI 166 (538)
Q Consensus 159 ~~~l~~l~ 166 (538)
.+.+..+.
T Consensus 300 l~~l~~~~ 307 (337)
T 3ll6_A 300 VHQLQEIA 307 (337)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887765
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=123.75 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=78.1
Q ss_pred eeeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
++..|+. |+++......... ......||+.|+|||++ .+ ..+++++||||||+++|+|+| |
T Consensus 153 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~~g 217 (291)
T 1xbb_A 153 QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI------NY---------YKFSSKSDVWSFGVLMWEAFSYG 217 (291)
T ss_dssp TTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTT
T ss_pred CCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHh------cc---------CCCChhhhHHHHHHHHHHHHhcC
Confidence 3457888 5566554432211 12235678999999998 22 456789999999999999999 9
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.......+. .+.. .. .+ .........+.+++.+||+.+|.+||++.++.+.+..
T Consensus 218 ~~p~~~~~~~~~~~~~~~-~~--------~~------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~ 276 (291)
T 1xbb_A 218 QKPYRGMKGSEVTAMLEK-GE--------RM------------GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRN 276 (291)
T ss_dssp CCSSTTCCHHHHHHHHHT-TC--------CC------------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHc-CC--------CC------------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 9 99875443111 0000 00 00 0001112247889999999999999999999998888
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
+.
T Consensus 277 ~~ 278 (291)
T 1xbb_A 277 YY 278 (291)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=125.84 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=72.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++..... ....+||+.|||||++ .+ ...++.++|||||||+||+|++|+ |
T Consensus 181 ~~~kL~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~p 241 (371)
T 4exu_A 181 CELKILDFGLARHADAE-----MTGYVVTRWYRAPEVI------LS--------WMHYNQTVDIWSVGCIMAEMLTGKTL 241 (371)
T ss_dssp CCEEECSTTCC-------------CTTCCCTTSCHHHH------SC--------CSCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEecCcccccccC-----cCCcccCccccCHHHh------cC--------CCCCCcHHhHHHHHHHHHHHHhCCCC
Confidence 457888 566655543 4468999999999998 33 246789999999999999999999 9
Q ss_pred cchhhhhhee-e-ccccccC-cchhhcchh-hHHHHHHHHHHH-------hhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 89 FTKELIDYIR-C-VSTKASD-DNIACLGMY-MAWMEKVTYLLE-------NKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 89 f~~~~~~~~~-~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
|.+....... . +...... ..+ ..... ..........+. .........+.+++.+||..+|.+||++.+
T Consensus 242 f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e 320 (371)
T 4exu_A 242 FKGKDYLDQLTQILKVTGVPGTEF-VQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQ 320 (371)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCHHH-HTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred CCCCChHHHHHHHHHHhCCCcHHH-HHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHH
Confidence 9875433111 0 0000000 000 00000 000000000000 000112345889999999999999999887
Q ss_pred HHH
Q 009274 158 VWK 160 (538)
Q Consensus 158 ~~~ 160 (538)
+.+
T Consensus 321 ll~ 323 (371)
T 4exu_A 321 ALT 323 (371)
T ss_dssp HHT
T ss_pred Hhc
Confidence 654
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=126.36 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=51.0
Q ss_pred eeeeec--cccccccccc--hhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 12 SVAKVG--CVGSRICDKE--VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~--~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
+.+|+. |+++.+.... ........+||+.|||||++ .| ...+++++|||||||++|+|+||+
T Consensus 161 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~ 226 (351)
T 3mi9_A 161 GVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL------LG--------ERDYGPPIDLWGAGCIMAEMWTRS 226 (351)
T ss_dssp SCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSS
T ss_pred CCEEEccchhcccccccccccccccCCcccccCccCchhh------cC--------CCCCCcHhHHHHHHHHHHHHHhCC
Confidence 467888 5566554221 11124468999999999998 33 244789999999999999999999
Q ss_pred -ccchhhhh
Q 009274 88 -QFTKELID 95 (538)
Q Consensus 88 -pf~~~~~~ 95 (538)
||.+....
T Consensus 227 ~pf~~~~~~ 235 (351)
T 3mi9_A 227 PIMQGNTEQ 235 (351)
T ss_dssp CSCCCSSHH
T ss_pred CCCCCCChH
Confidence 99875433
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-12 Score=123.79 Aligned_cols=118 Identities=13% Similarity=0.181 Sum_probs=80.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+.+|+. |+++........ ......||+.|+|||++ .+ ..+++++||||||+++|+|++ |.
T Consensus 148 ~~~~l~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~ll~~g~~ 211 (288)
T 3kfa_A 148 HLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESL------AY---------NKFSIKSDVWAFGVLLWEIATYGMS 211 (288)
T ss_dssp GCEEECCCCGGGTSCSSSSE-EETTEEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEccCccceeccCCccc-cccCCccccCcCChhhh------cc---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457887 556665544321 24457889999999998 32 457789999999999999999 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+... ......... ......+.+++.+||..+|.+||++.++.+.+..+.
T Consensus 212 p~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 212 PYPGIDLSQVYEL---------------------LEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp SSTTCCGGGHHHH---------------------HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHH---------------------HhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 9987544311100 000000000 111223788999999999999999999988887765
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-12 Score=126.45 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=67.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++..... .+..+||+.|||||++ .+ ...++.++|||||||+||+|++|+ |
T Consensus 169 ~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~p 229 (367)
T 2fst_X 169 CELKILDFGLARHTADE-----MTGYVATRWYRAPEIM------LN--------WMHYNQTVDIWSVGCIMAELLTGRTL 229 (367)
T ss_dssp CCEEECC--------------------CCCTTCCHHHH------TT--------CCSCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeecccccccccc-----CCCcCcCcCccChHHH------cC--------CcCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 566665543 4568999999999998 33 246789999999999999999999 9
Q ss_pred cchhhhhhee-e-ccccccCcchhhcch-hhHHHHHHHHHH-------HhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 89 FTKELIDYIR-C-VSTKASDDNIACLGM-YMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 89 f~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
|.+....... . +........-..... ....+......+ ..........+.+++.+||..+|.+||++.++
T Consensus 230 f~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~ 309 (367)
T 2fst_X 230 FPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 309 (367)
T ss_dssp CCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHH
Confidence 9875433111 0 000000000000000 000000000000 00001122347889999999999999998876
Q ss_pred HH
Q 009274 159 WK 160 (538)
Q Consensus 159 ~~ 160 (538)
.+
T Consensus 310 L~ 311 (367)
T 2fst_X 310 LA 311 (367)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=122.55 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=77.5
Q ss_pred eeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
.-+|+. |+++.+...... .......||+.|||||++ .+ ..+++++||||||+++|+|+||.
T Consensus 151 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~~g~~ 215 (295)
T 3ugc_A 151 NRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESL------TE---------SKFSVASDVWSFGVVLYELFTYIE 215 (295)
T ss_dssp TEEEECCCCSCC-------------CTTCGGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEccCcccccccCCcceeeeccCCCCccceeCcHHh------cC---------CCCChHHHHHHHHHHHHHHHhccc
Confidence 457888 666666543321 112346788999999998 32 45778999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh----h-cCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK----F-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||.............. ................. . ......+.+++.+||+.+|.+||++.++.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L 286 (295)
T 3ugc_A 216 KSKSPPAEFMRMIGND---------KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRV 286 (295)
T ss_dssp TTCSHHHHHHHHHCTT---------CCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred ccCCChHHHHhhhcCc---------cccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence 8876533311100000 00000000111111111 1 11223488999999999999999999999888
Q ss_pred HHhh
Q 009274 163 RELI 166 (538)
Q Consensus 163 ~~l~ 166 (538)
.++.
T Consensus 287 ~~l~ 290 (295)
T 3ugc_A 287 DQIR 290 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-13 Score=128.37 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=74.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++...... .....||+.|||||++ .+ ..+++++|||||||++|+|++|+ |
T Consensus 146 ~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 206 (304)
T 2jam_A 146 SKIMITDFGLSKMEQNGI----MSTACGTPGYVAPEVL------AQ---------KPYSKAVDCWSIGVITYILLCGYPP 206 (304)
T ss_dssp CCEEBCSCSTTCCCCCBT----THHHHSCCCBCCTTTB------SS---------CSCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEccCCcceecCCCc----cccccCCCCccChHHh------cc---------CCCCchhhHHHHHHHHHHHHHCCCC
Confidence 457888 4555444332 4467899999999998 43 56788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+.. . ..... ..........+.+++.+||..+|.+||++.++.+
T Consensus 207 f~~~~~~~~~~~i~~--~-----~~~~~-----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 207 FYEETESKLFEKIKE--G-----YYEFE-----------SPFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTSCHHHHHHHHHH--C-----CCCCC-----------TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCCHHHHHHHHHc--C-----CCCCC-----------ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9775433111 0000 0 00000 0000111234788999999999999999887765
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-12 Score=124.49 Aligned_cols=126 Identities=18% Similarity=0.294 Sum_probs=71.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+..... ......||+.|||||++ .+ ...++.++|||||||++|+|++|+ |
T Consensus 161 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~g~~p 224 (331)
T 4aaa_A 161 GVVKLCDFGFARTLAAPGE--VYDDEVATRWYRAPELL------VG--------DVKYGKAVDVWAIGCLVTEMFMGEPL 224 (331)
T ss_dssp SCEEECCCTTC--------------CCCCCTTCCHHHH------TT--------CTTCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEEeCCCceeecCCcc--ccCCCcCCccccCcccc------cC--------CCCcchHHHHHHHHHHHHHHHhCCCC
Confidence 467888 55665554322 24568999999999998 33 235788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHH----------------HhhhcCccchHHHHHhhhhccCCCC
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLL----------------ENKFGSEFVSLQLMFCQCLNFDPGC 151 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~l~~~p~~ 151 (538)
|......... .+... .....+.........+ ....+.....+.+++.+||..+|.+
T Consensus 225 f~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 297 (331)
T 4aaa_A 225 FPGDSDIDQLYHIMMC-------LGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDK 297 (331)
T ss_dssp CCCSSHHHHHHHHHHH-------HCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGG
T ss_pred CCCCCcHHHHHHHHHH-------hCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCccc
Confidence 9875433111 00000 0000000000000000 0000112234788999999999999
Q ss_pred CcchhhHHH
Q 009274 152 RPLLTNVWK 160 (538)
Q Consensus 152 r~~~~~~~~ 160 (538)
||++.++.+
T Consensus 298 Rpt~~ell~ 306 (331)
T 4aaa_A 298 RPFCAELLH 306 (331)
T ss_dssp SCCGGGGGG
T ss_pred CCCHHHHhc
Confidence 999988765
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-12 Score=127.31 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=70.5
Q ss_pred eeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 12 SVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
..+|+. |+++.+.+..... ......||+.|||||++ .+ ..+++++|||||||+||||+| |
T Consensus 229 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwSlG~il~ellt~~ 293 (373)
T 3c1x_A 229 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESL------QT---------QKFTTKSDVWSFGVLLWELMTRG 293 (373)
T ss_dssp CCEEECCC---------------------CCGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEeeccccccccccccccccccCCCCCcccccChHHh------cC---------CCCCcHHHHHHHHHHHHHHHhCc
Confidence 467888 6677665443211 12357789999999998 22 557789999999999999999 5
Q ss_pred C-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
. ||.......+.....+.. ... ........+.+++.+||..+|.+||+..++.+.+..+
T Consensus 294 ~~p~~~~~~~~~~~~~~~~~-------~~~-------------~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i 353 (373)
T 3c1x_A 294 APPYPDVNTFDITVYLLQGR-------RLL-------------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353 (373)
T ss_dssp CCSCTTSCSSCHHHHHHTTC-------CCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHcCC-------CCC-------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 5 787643321110000000 000 0011122478899999999999999999999988887
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 354 ~ 354 (373)
T 3c1x_A 354 F 354 (373)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-12 Score=131.34 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=75.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++.+.+.... ......||+.|||||++ .+ ..++.++|||||||+||||+| |+
T Consensus 316 ~~~~kl~DfG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~sDvwslG~~l~el~t~g~ 379 (452)
T 1fmk_A 316 NLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAA------LY---------GRFTIKSDVWSFGILLTELTTKGR 379 (452)
T ss_dssp GGCEEECCCCTTC---------------CCGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEECCCccceecCCCcee-cccCCcccccccCHhHH------hc---------CCCCccccHHhHHHHHHHHHhCCC
Confidence 3468898 677776644322 13357789999999998 22 567899999999999999999 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.....+. .+. . . ..++ ........+.+++.+||..+|.+||+..++.+.+..+
T Consensus 380 ~P~~~~~~~~~~~~i~-~-~------~~~~-------------~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~ 438 (452)
T 1fmk_A 380 VPYPGMVNREVLDQVE-R-G------YRMP-------------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 438 (452)
T ss_dssp CSSTTCCHHHHHHHHH-T-T------CCCC-------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHH-c-C------CCCC-------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 99875433111 000 0 0 0000 0011122378899999999999999999999888876
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 439 ~ 439 (452)
T 1fmk_A 439 F 439 (452)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-12 Score=126.69 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=77.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++....... .....||+.|+|||++ .+ ..+++++|||||||++|+|+| |+
T Consensus 179 ~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ellt~g~~ 240 (327)
T 1fvr_A 179 YVAKIADFGLSRGQEVYVK---KTMGRLPVRWMAIESL------NY---------SVYTTNSDVWSYGVLLWEIVSLGGT 240 (327)
T ss_dssp GCEEECCTTCEESSCEECC---C----CCTTTCCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred CeEEEcccCcCcccccccc---ccCCCCCccccChhhh------cc---------ccCCchhcchHHHHHHHHHHcCCCC
Confidence 467888 45554332221 2346789999999998 22 456789999999999999998 99
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. .+.. .. ... ........+.+++.+||..+|.+||++.++.+.+.+++
T Consensus 241 pf~~~~~~~~~~~~~~-~~-----~~~---------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 299 (327)
T 1fvr_A 241 PYCGMTCAELYEKLPQ-GY-----RLE---------------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 299 (327)
T ss_dssp TTTTCCHHHHHHHGGG-TC-----CCC---------------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHhhc-CC-----CCC---------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 99875444211 0000 00 000 00011224778999999999999999999999988876
Q ss_pred cC
Q 009274 167 IK 168 (538)
Q Consensus 167 ~~ 168 (538)
..
T Consensus 300 ~~ 301 (327)
T 1fvr_A 300 EE 301 (327)
T ss_dssp HS
T ss_pred Hh
Confidence 43
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=126.73 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=72.9
Q ss_pred eeeeeec--cccccccccchh----------hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhh
Q 009274 11 KSVAKVG--CVGSRICDKEVG----------LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVAC 78 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~----------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~ 78 (538)
++.+|+. |+++.+...... ......+||+.|||||++ .+ ..+++++|||||||
T Consensus 200 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~ 264 (332)
T 3qd2_B 200 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQI------HG---------NNYSHKVDIFSLGL 264 (332)
T ss_dssp TCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHH------HC---------CCCCTHHHHHHHHH
T ss_pred CCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHh------cC---------CCCcchhhHHHHHH
Confidence 3568888 666666554211 113457899999999999 44 56789999999999
Q ss_pred hhhhhhhcC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 79 ILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 79 ~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
++|+|++|. |+........... ....+... .... +.+.+++.+||+.+|.+||++.+
T Consensus 265 il~el~~~~~~~~~~~~~~~~~~----------~~~~~~~~----~~~~--------~~~~~li~~~l~~~p~~Rps~~~ 322 (332)
T 3qd2_B 265 ILFELLYSFSTQMERVRIITDVR----------NLKFPLLF----TQKY--------PQEHMMVQDMLSPSPTERPEATD 322 (332)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHH----------TTCCCHHH----HHHC--------HHHHHHHHHHHCSSGGGSCCHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHhh----------ccCCCccc----ccCC--------hhHHHHHHHHccCCCCcCCCHHH
Confidence 999999999 7765422210000 00111111 1111 12567999999999999999887
Q ss_pred HHH
Q 009274 158 VWK 160 (538)
Q Consensus 158 ~~~ 160 (538)
+.+
T Consensus 323 ~l~ 325 (332)
T 3qd2_B 323 IIE 325 (332)
T ss_dssp HHH
T ss_pred Hhh
Confidence 765
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-12 Score=122.63 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=69.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+++.+..... ......||+.|||||++ .+ ...+++++|||||||++|+|++|+
T Consensus 138 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~g~~ 201 (311)
T 4agu_A 138 HSVIKLCDFGFARLLTGPSD--YYDDEVATRWYRSPELL------VG--------DTQYGPPVDVWAIGCVFAELLSGVP 201 (311)
T ss_dssp TSCEEECCCTTCEECC--------------GGGCCHHHH------HT--------CSCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeeCCCchhccCccc--ccCCCcCCccccChHHH------hc--------CCCCCcchhhHHHHHHHHHHHhCCC
Confidence 3567888 55665553322 24568999999999998 32 245788999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHH----------------HHhhhcCccchHHHHHhhhhccCCC
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYL----------------LENKFGSEFVSLQLMFCQCLNFDPG 150 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (538)
||.+....... .+... .....+......... .....+.....+.+++.+||..+|.
T Consensus 202 p~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 274 (311)
T 4agu_A 202 LWPGKSDVDQLYLIRKT-------LGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPT 274 (311)
T ss_dssp SCCCSSHHHHHHHHHHH-------HCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTT
T ss_pred CCCCCCHHHHHHHHHHH-------hcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChh
Confidence 99875433111 00000 000000000000000 0000012223477899999999999
Q ss_pred CCcchhhHHH
Q 009274 151 CRPLLTNVWK 160 (538)
Q Consensus 151 ~r~~~~~~~~ 160 (538)
+||++.++.+
T Consensus 275 ~Rpt~~ell~ 284 (311)
T 4agu_A 275 ERLTCEQLLH 284 (311)
T ss_dssp TSCCHHHHHT
T ss_pred hcCCHHHHhc
Confidence 9999887664
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-12 Score=124.04 Aligned_cols=112 Identities=18% Similarity=0.286 Sum_probs=75.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++.+...... .....||+.|+|||++ .+ ..+++++||||||++||+|++|+ |
T Consensus 156 ~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 218 (303)
T 3a7i_A 156 GEVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVI------KQ---------SAYDSKADIWSLGITAIELARGEPP 218 (303)
T ss_dssp SCEEECCCTTCEECBTTBCC--BCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeecccceecCccccc--cCccCCCcCccCHHHH------hc---------CCCCchhhhHHHHHHHHHHccCCCC
Confidence 457888 556665544322 4468899999999999 43 56778999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|......... ..+......... .....+.+++.+||..+|.+||++.++.+.
T Consensus 219 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 219 HSELHPMKVL---------------------FLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp TTTSCHHHHH---------------------HHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred CCCcCHHHHH---------------------HHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 9765333111 000000000011 112247889999999999999998887653
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-12 Score=123.10 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=72.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++..... .....||+.|+|||++ .+ ..+++++||||||+++|+|+| |+
T Consensus 153 ~~~~~l~Dfg~~~~~~~~-----~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~t~g~ 212 (278)
T 1byg_A 153 DNVAKVSDFGLTKEASST-----QDTGKLPVKWTAPEAL------RE---------KKFSTKSDVWSFGILLWEIYSFGR 212 (278)
T ss_dssp TSCEEECCCCC-----------------CCTTTSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEeecccccccccc-----ccCCCccccccCHHHh------CC---------CCCCchhcHHHHHHHHHHHHhCCC
Confidence 3467888 455555433 2346789999999998 22 457789999999999999999 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.. . .. + .........+.+++.+||..+|.+||++.++.+.+.++
T Consensus 213 ~p~~~~~~~~~~~~~~~--~------~~-~------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i 271 (278)
T 1byg_A 213 VPYPRIPLKDVVPRVEK--G------YK-M------------DAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 271 (278)
T ss_dssp CSCTTSCGGGHHHHHTT--T------CC-C------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhc--C------CC-C------------CCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHH
Confidence 99865333111 0000 0 00 0 00011123478899999999999999999999888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 272 ~ 272 (278)
T 1byg_A 272 K 272 (278)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-09 Score=97.71 Aligned_cols=209 Identities=9% Similarity=-0.013 Sum_probs=142.1
Q ss_pred ccCcceeEEeecCCeEEEEEeecCC-CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCC-cCeEEEEEecC
Q 009274 228 AGGVKDLVNGLSKGNVKFKDLQGHR-DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDE 303 (538)
Q Consensus 228 ~~~~~~~~~~~~~~~~~i~~l~~h~-~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~ 303 (538)
...+..+.....+....+|.+..|. ..+.++++. |++++ +.++.|..||. +++.+..+..+. ..+.++.+.++
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d 87 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD 87 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCC
Confidence 3344555555553555679988876 578888887 77777 45788999999 899999998753 57888899886
Q ss_pred CCCEEEEEcC-CCcEEEEEccCCCCCcceeeeccc-CCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCC
Q 009274 304 DQPLCISGDS-GGGIFVWSFSFPLGHEPLKKWNEE-KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH 381 (538)
Q Consensus 304 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 381 (538)
+. ++++.+. ++.+..+|. +++........... .........++.++|+++++...++.|..||.. |+.++++..+
T Consensus 88 G~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~ 164 (276)
T 3no2_A 88 GN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS 164 (276)
T ss_dssp SC-EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS
T ss_pred CC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC
Confidence 55 5555554 667776664 23222222111110 000011123567889999999999999999987 9999998765
Q ss_pred CCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCC----CceEEEEEEcCCCCEEEEEe
Q 009274 382 KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS----GAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 382 ~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 443 (538)
. ...++... ++.+++++.++.|..+|..+++.+.++..... -.........++|+++++.+
T Consensus 165 ~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 165 G-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp S-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred C-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 3 34455555 55788888888999999999999998864321 12233457778888887764
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-12 Score=122.56 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=73.2
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.+ ++....... .....||+.|||||++ .+ ..+++++||||||+++|+|++|. |
T Consensus 151 ~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 211 (284)
T 2vgo_A 151 GELKIADFGWSVHAPSLR----RRTMCGTLDYLPPEMI------EG---------KTHDEKVDLWCAGVLCYEFLVGMPP 211 (284)
T ss_dssp CCEEECCCTTCEECSSSC----BCCCCSCGGGCCHHHH------TT---------CCBCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEecccccccCcccc----cccccCCCCcCCHHHh------cc---------CCCCcccchhhHHHHHHHHHHCCCC
Confidence 4578884 454444332 3468899999999999 44 56788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......... .+... .... ......+.+++.+||..+|.+||++.++.+
T Consensus 212 f~~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 212 FDSPSHTETHR---------------------RIVNV-DLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp TCCSSHHHHHH---------------------HHHTT-CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCHhHHHH---------------------HHhcc-ccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 98653331110 00000 0000 011123778999999999999999988765
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-12 Score=122.40 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=75.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++...... ......||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 157 ~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 218 (326)
T 1blx_A 157 GQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVL------LQ---------SSYATPVDLWSVGCIFAEMFRRKPL 218 (326)
T ss_dssp CCEEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEecCcccccccCCC---CccccccccceeCHHHH------hc---------CCCCcchhHHHHHHHHHHHHcCCCC
Confidence 457888 5566655432 24568999999999999 43 56789999999999999999999 9
Q ss_pred cchhhhhhee-ec----cccccCcchh-hcchhh-HHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CV----STKASDDNIA-CLGMYM-AWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~----~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+....... .+ ....... .. ....+. ....................+.+++.+||..+|.+||++.++.+
T Consensus 219 f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 219 FRGSSDVDQLGKILDVIGLPGEED-WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCGGG-SCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCCCccc-CccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 9875333111 00 0000000 00 000000 00000000000000111223678999999999999999887654
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-13 Score=126.84 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=80.4
Q ss_pred eeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..|+. |+++........ .......||+.|||||++ .+ ..++.++||||||+++|+|+||.
T Consensus 171 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~ll~g~~ 235 (318)
T 3lxp_A 171 RLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECL------KE---------YKFYYASDVWSFGVTLYELLTHCD 235 (318)
T ss_dssp CCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTTC
T ss_pred CCEEECCccccccccccccccccccCCCCCceeeChHHh------cC---------CCCCcHHHHHHHHHHHHHHHhCCC
Confidence 457888 556665543221 123457899999999999 32 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-----cCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-----GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||............ ....... ............ ......+.+++.+||+.+|.+||++.++.+.+
T Consensus 236 p~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L 305 (318)
T 3lxp_A 236 SSQSPPTKFLELIG---------IAQGQMT-VLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPIL 305 (318)
T ss_dssp GGGSHHHHHHHHHC---------SCCHHHH-HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred cccccchhhhhhhc---------ccccchh-HHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence 99865433111000 0000000 001111111111 11223488999999999999999999998887
Q ss_pred HHhh
Q 009274 163 RELI 166 (538)
Q Consensus 163 ~~l~ 166 (538)
..+.
T Consensus 306 ~~l~ 309 (318)
T 3lxp_A 306 KTVH 309 (318)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-12 Score=130.86 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=77.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++..... .....+|+.|||||++ .+ ..++.++|||||||+||||+| |+
T Consensus 325 ~~~~kl~DfG~a~~~~~~-----~~~~~~~~~y~aPE~~------~~---------~~~~~~sDvwslG~~l~el~t~g~ 384 (450)
T 1k9a_A 325 DNVAKVSDFGLTKEASST-----QDTGKLPVKWTAPEAL------RE---------KKFSTKSDVWSFGILLWEIYSFGR 384 (450)
T ss_dssp TSCEEECCCTTCEECC-----------CCCTTTSCHHHH------HS---------SCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEeeCCCccccccc-----ccCCCCCcceeCHHHh------cC---------CCCCcHHHHHHHHHHHHHHHhCCC
Confidence 3568998 666655433 2245789999999999 33 567899999999999999999 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+. +. ..+ .........+.+++.+||..+|.+||+..++.+.+..+
T Consensus 385 ~P~~~~~~~~~~~~i~-~~-------~~~-------------~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i 443 (450)
T 1k9a_A 385 VPYPRIPLKDVVPRVE-KG-------YKM-------------DAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI 443 (450)
T ss_dssp CSSTTSCTTTHHHHHH-TT-------CCC-------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH-cC-------CCC-------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 99875433111 000 00 000 00011223478899999999999999999999888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 444 ~ 444 (450)
T 1k9a_A 444 R 444 (450)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-12 Score=124.92 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=76.1
Q ss_pred eeeeec--cccccccccch-hhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+-.|+. |+++....... ....+..+||+.|||||++ .+ ...++.++|||||||+||+|++|+
T Consensus 165 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~ 230 (364)
T 3qyz_A 165 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM------LN--------SKGYTKSIDIWSVGCILAEMLSNRP 230 (364)
T ss_dssp CCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHH------HT--------BCSCSTHHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCcceEecCCCCCccccccccccccCCCCCHHh------cC--------CCCCCcchhHHHHHHHHHHHHHCCC
Confidence 357888 56665554322 1123567999999999997 22 234788999999999999999999
Q ss_pred ccchhhhhhee-ecc-ccccC--cchhhcchhhHHHHHHHHHH-------HhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 88 QFTKELIDYIR-CVS-TKASD--DNIACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 88 pf~~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
||.+....... .+. ..... ..+..... ..........+ ..........+.+++.+||..+|.+||++.
T Consensus 231 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ 309 (364)
T 3qyz_A 231 IFPGKHYLDQLNHILGILGSPSQEDLNCIIN-LKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVE 309 (364)
T ss_dssp SSCCSSGGGHHHHHHHHHCSCCHHHHHTCCC-HHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred CCCCCChHHHHHHHHHHhCCCCHHHHHHhhh-hhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence 99875433111 000 00000 00000000 00000000000 000011223478899999999999999988
Q ss_pred hHHH
Q 009274 157 NVWK 160 (538)
Q Consensus 157 ~~~~ 160 (538)
++.+
T Consensus 310 e~l~ 313 (364)
T 3qyz_A 310 QALA 313 (364)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7765
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-13 Score=125.50 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=76.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++.+..... .....||+.|+|||++...... ....++.++||||||+++|+|++|+ |
T Consensus 161 ~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~---------~~~~~~~~~Di~slG~~l~~l~~g~~p 228 (298)
T 1phk_A 161 MNIKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEIIECSMND---------NHPGYGKEVDMWSTGVIMYTLLAGSPP 228 (298)
T ss_dssp CCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCT---------TSCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEecccchhhcCCCcc---cccccCCccccCHHHhcccccc---------ccccCCcccccHhHHHHHHHHHHCCCC
Confidence 357888 45565554332 4568899999999998444322 1245788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......+. .+.. .. .....+ ........+.+++.+||..+|.+||++.++.+
T Consensus 229 ~~~~~~~~~~~~~~~-~~-----~~~~~~------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 229 FWHRKQMLMLRMIMS-GN-----YQFGSP------------EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp SCCSSHHHHHHHHHH-TC-----CCCCTT------------TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CcCccHHHHHHHHhc-CC-----cccCcc------------cccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 9765333111 0000 00 000000 00011223778999999999999999887654
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.8e-13 Score=127.72 Aligned_cols=132 Identities=11% Similarity=0.161 Sum_probs=78.7
Q ss_pred eeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc-
Q 009274 12 SVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG- 86 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg- 86 (538)
+.+|+. |+++......... ......||+.|||||++ .+. .......++.++|||||||+||+|+||
T Consensus 184 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~---~~~~~~~~~~~~Di~slG~il~el~tg~ 254 (342)
T 1b6c_B 184 GTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL------DDS---INMKHFESFKRADIYAMGLVFWEIARRC 254 (342)
T ss_dssp SCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHH------TSC---CCTTCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCEEEEECCCceeccccccccccccccCCcCcccCCHhhh------ccc---ccccccccCCcccHHHHHHHHHHHHhcc
Confidence 457888 5666655443211 13457899999999999 330 000012445789999999999999999
Q ss_pred ---------C-ccchhhhhh-----ee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCC
Q 009274 87 ---------E-QFTKELIDY-----IR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPG 150 (538)
Q Consensus 87 ---------~-pf~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (538)
+ ||....... +. .+..... ....+..+. ....+ ..+.+++.+||..+|.
T Consensus 255 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~--------~~l~~li~~cl~~dp~ 319 (342)
T 1b6c_B 255 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL-----RPNIPNRWQ--SCEAL--------RVMAKIMRECWYANGA 319 (342)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC-----CCCCCGGGG--TSHHH--------HHHHHHHHHHCCSSGG
T ss_pred CcCCcccccccCccccCcCcccHHHHHHHHHHHHh-----CCCCccccc--chhHH--------HHHHHHHHHHhccChh
Confidence 6 776532210 00 0000000 000000000 00011 1277899999999999
Q ss_pred CCcchhhHHHHHHHhhc
Q 009274 151 CRPLLTNVWKCIRELII 167 (538)
Q Consensus 151 ~r~~~~~~~~~l~~l~~ 167 (538)
+||++.++.+.+.++..
T Consensus 320 ~Rps~~~i~~~L~~i~~ 336 (342)
T 1b6c_B 320 ARLTALRIKKTLSQLSQ 336 (342)
T ss_dssp GSCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 99999999999888763
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-13 Score=133.76 Aligned_cols=256 Identities=19% Similarity=0.121 Sum_probs=136.4
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccC
Q 009274 259 AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEK 338 (538)
Q Consensus 259 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 338 (538)
+..++.+++++.||.|+.||..+|+.++.++. +.+.+..+..+ +.++++++.||.|+.||..+++............
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 34588999999999999999999999999886 44544444443 4466778899999999998776543222110000
Q ss_pred CceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEE
Q 009274 339 DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418 (538)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 418 (538)
..... .+ .++..+++|+.|+.|+.||..+|+.++.+..+.. +. .+-.++.+++++.|+.|+.||.++++.+..+
T Consensus 83 -~~~sp--~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 83 -VQASP--CR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp -HTTCS--CC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred -cccCc--eE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 00000 11 1355788889999999999999999988865542 11 1114678999999999999999999987766
Q ss_pred ecCCCCceEEEEEEcCCC---CEEEEEeCCCcEEEEeCC--cceeeeccccceEEEE-Ee--CCCEE----EEEeCCCeE
Q 009274 419 EEDSSGAVSSVLSLTAVQ---HTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAV-FL--EGKWL----FTGGWDKTV 486 (538)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~-~~--~~~~l----~sgs~dg~v 486 (538)
.... .....+..+. ..+++++.||.++.||.. +.+..... ..++..+ .. ++... +.+ ++.+
T Consensus 157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l 229 (369)
T 2hz6_A 157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETL 229 (369)
T ss_dssp EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHH
T ss_pred eccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--ccce
Confidence 5321 1112233322 567788999999999954 44444432 3344332 22 33221 111 3456
Q ss_pred EEEecCCCe----eEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEc
Q 009274 487 SVQELAGDE----FEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 487 ~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~ 536 (538)
+.+|..+++ ..+......... .+ ...++.+++++.||.|+.++.
T Consensus 230 ~~ld~~tG~~~~~~~W~~~~~~~~~--sp----~~~~g~lyv~~~~G~l~al~~ 277 (369)
T 2hz6_A 230 RYLTFMSGEVGRITKWKYPFPKETE--AK----SKLTPTLYVGKYSTSLYASPS 277 (369)
T ss_dssp HHHHHHHHHHHHHHTSCCCCCCHHH--HH----HHSEEEECBEECSSCEECCEE
T ss_pred eeeehhcCCcccceeeeeccCcccc--cc----ccccceEEEecccCCEEecCc
Confidence 667765555 333322211110 01 113567888888888887664
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=132.61 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=81.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++.+...... ......||+.|||||++ .+ ..++.++|||||||+||||+| |+
T Consensus 354 ~~~~kl~DFG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~sDvwSlG~~l~el~t~g~ 417 (495)
T 1opk_A 354 NHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESL------AY---------NKFSIKSDVWAFGVLLWEIATYGM 417 (495)
T ss_dssp GGCEEECCTTCEECCTTCCEE-CCTTCCCCGGGCCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEeecccceeccCCcee-ecCCCcCCcceeCHhHH------hc---------CCCCcHHhHHhHHHHHHHHHhCCC
Confidence 4568898 677766543322 13356788999999998 22 457789999999999999999 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.....+. ..+....... .......+.+++.+||..+|.+||++.++.+.+..+
T Consensus 418 ~p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 418 SPYPGIDLSQVY---------------------ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp CSSTTCCGGGHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 99875433111 0000000000 011223477899999999999999999999888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 477 ~ 477 (495)
T 1opk_A 477 F 477 (495)
T ss_dssp C
T ss_pred H
Confidence 5
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-12 Score=122.29 Aligned_cols=116 Identities=15% Similarity=0.268 Sum_probs=72.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+++....... ......||+.|+|||++.... ..++.++||||||+++|+|++|+
T Consensus 159 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~-------------~~~~~~~Di~slG~il~~l~~g~~ 223 (295)
T 2clq_A 159 SGVLKISDFGTSKRLAGINP--CTETFTGTLQYMAPEIIDKGP-------------RGYGKAADIWSLGCTIIEMATGKP 223 (295)
T ss_dssp TCCEEECCTTTCEESCC-------CCCCCCGGGCCHHHHHHGG-------------GGCSHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEeecccccccCCCCC--cccccCCCccccChhhhcCCC-------------CCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3467888 45555543321 144688999999999982211 23678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||......... .. ..... ......+ .....+.+++.+||..+|.+||++.++.+
T Consensus 224 pf~~~~~~~~~------------~~------~~~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 224 PFYELGEPQAA------------MF------KVGMF-KVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp TTGGGSSHHHH------------HH------HHHHH-CCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred CccCCCchhHH------------HH------hhccc-cccccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 99754222000 00 00000 0000011 11234778999999999999999887654
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-12 Score=129.37 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=70.5
Q ss_pred eeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 12 SVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
..+|+. |+++.+....... .....+||+.|||||++ .+. ........++.++|||||||++|||+| |
T Consensus 165 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~--~~~~~~~~~~~~~DiwSlG~il~ellt~g 236 (434)
T 2rio_A 165 LRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELL------EES--NNLQTKRRLTRSIDIFSMGCVFYYILSKG 236 (434)
T ss_dssp CEEEECCCTTCEECCC--------------CCTTSCHHHH------SCC--CTTSCCCCCCTHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHh------ccc--cccccccCcchhhhhHhHHHHHHHHHhCC
Confidence 468888 6677666543211 13457999999999999 331 001123568899999999999999999 8
Q ss_pred C-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
+ ||..........+..... ............+ . .+.+++.+||..+|.+||++.++.+
T Consensus 237 ~~Pf~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~---~--------~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 237 KHPFGDKYSRESNIIRGIFS-----LDEMKCLHDRSLI---A--------EATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp CCTTCSTTTHHHHHHHTCCC-----CCCCTTCCCHHHH---H--------HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCchhhHHHHhcCCCC-----cccccccccccch---H--------HHHHHHHHHhhCChhhCCCHHHHHh
Confidence 8 997643221000000000 0000000000111 1 2678999999999999999887654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-09 Score=109.90 Aligned_cols=269 Identities=10% Similarity=0.069 Sum_probs=172.2
Q ss_pred ceeEEeecCCeEEEEEeecCCC-----------cEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecC-C----cCe
Q 009274 232 KDLVNGLSKGNVKFKDLQGHRD-----------CVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGH-D----HKV 295 (538)
Q Consensus 232 ~~~~~~~~~~~~~i~~l~~h~~-----------~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~----~~v 295 (538)
..++.-.......+|.+..... .-..+++.++.++.++.|+.|..+|..+|+.+..+..+ . ..+
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~ 166 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTI 166 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBC
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCccc
Confidence 3344444445556788765432 11345566889999999999999999999999998865 2 112
Q ss_pred EE-EEEecCCCCEEEEEcC------CCcEEEEEccCCCCCcceeeecccC---------------------------Cce
Q 009274 296 MA-VVYVDEDQPLCISGDS------GGGIFVWSFSFPLGHEPLKKWNEEK---------------------------DWR 341 (538)
Q Consensus 296 ~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~---------------------------~~~ 341 (538)
.+ ... . ++ .++.++. +|.|+.+|..+++............ ...
T Consensus 167 ~~~p~v-~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~ 243 (677)
T 1kb0_A 167 TGAPRV-F-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGT 243 (677)
T ss_dssp CSCCEE-E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECC
T ss_pred ccCcEE-E-CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcc
Confidence 11 111 1 33 3344432 7899999998876544333211110 000
Q ss_pred eeeEEEEeecCCEEEEeeCCC-------------------cEEEEECCCCceeEEecC--CC--------CCe-EEEEEe
Q 009274 342 YSGIHALTTSGRYLYTGSGDR-------------------TIKAWSLLDGTLSCTMSG--HK--------SAV-STLAVC 391 (538)
Q Consensus 342 ~~~~~~~~~~~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~~--h~--------~~v-~~l~~~ 391 (538)
.....+++++++.++.++.++ .|..+|..+|+.++.+.. |. .++ ......
T Consensus 244 ~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 244 MWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp CCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred cccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC
Confidence 012346777888888887664 599999999999988753 21 111 111222
Q ss_pred C---CEEEEEecCCcEEEEECCCCceeEEEecCCCCc---------eE------------------------EEEEEcCC
Q 009274 392 N---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA---------VS------------------------SVLSLTAV 435 (538)
Q Consensus 392 ~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~------------------------~~~~~~~~ 435 (538)
+ +.++.++.+|.++++|..+|+.+..+....... .. ..++++|+
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 3 578999999999999999999987765332110 00 02477888
Q ss_pred CCEEEEEeCC-------------------------------------------CcEEEEeCCc--ceeeeccccceEE--
Q 009274 436 QHTLVVSHES-------------------------------------------GSIKVWRNDK--FMKSMQTHKGSVF-- 468 (538)
Q Consensus 436 ~~~l~~~~~d-------------------------------------------g~i~iwd~~~--~~~~~~~h~~~v~-- 468 (538)
+.++++...+ |.|..||..+ .+..+... .++.
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g 482 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGG 482 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCc
Confidence 8888876432 6789999654 33333322 2222
Q ss_pred EEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCC
Q 009274 469 AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG 504 (538)
Q Consensus 469 ~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 504 (538)
.+..++..++.++.||.+++||..+++.........
T Consensus 483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 244578889999999999999999999887776543
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-12 Score=124.88 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=81.3
Q ss_pred eeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+.+|+. |+++.+...... .......||+.|+|||++ .+ ..++.++|||||||++|+|+||.
T Consensus 163 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~ 227 (302)
T 4e5w_A 163 HQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECL------MQ---------SKFYIASDVWSFGVTLHELLTYCD 227 (302)
T ss_dssp TEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTTC
T ss_pred CCEEECcccccccccCCCcceeccCCCCCCccccCCeee------cC---------CCCCcchhHHHHHHHHHHHHHccC
Confidence 457888 556655543221 123467899999999998 32 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-----cCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-----GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
|+............ . ....... ........... ......+.+++.+||+.+|.+||++.++.+.+
T Consensus 228 p~~~~~~~~~~~~~---~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L 297 (302)
T 4e5w_A 228 SDSSPMALFLKMIG---P------THGQMTV-TRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGF 297 (302)
T ss_dssp GGGSHHHHHHHHHC---S------CCGGGHH-HHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred CCcchhhHHhhccC---C------cccccCH-HHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 87654322111000 0 0000000 11111111111 11223488999999999999999999999988
Q ss_pred HHhh
Q 009274 163 RELI 166 (538)
Q Consensus 163 ~~l~ 166 (538)
..++
T Consensus 298 ~~ll 301 (302)
T 4e5w_A 298 EALL 301 (302)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-12 Score=122.00 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=79.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
+..|+. |+++...+.... ......||+.|+|||++ .+ ..++.++||||||+++|+|++ |+
T Consensus 146 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~~g~~ 209 (279)
T 1qpc_A 146 LSCKIADFGLARLIEDNEYT-AREGAKFPIKWTAPEAI------NY---------GTFTIKSDVWSFGILLTEIVTHGRI 209 (279)
T ss_dssp SCEEECCCTTCEECSSSCEE-CCTTCCCCTTTSCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCEEECCCcccccccCcccc-cccCCCCccCccChhhh------cc---------CCCCchhhhHHHHHHHHHHHhCCCC
Confidence 457888 556665543321 13357789999999998 22 457789999999999999999 88
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.....+. .+.. . ... .........+.+++.+||..+|.+||+..++.+.+..+.
T Consensus 210 p~~~~~~~~~~~~~~~--~------~~~-------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 268 (279)
T 1qpc_A 210 PYPGMTNPEVIQNLER--G------YRM-------------VRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF 268 (279)
T ss_dssp SSTTCCHHHHHHHHHT--T------CCC-------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhc--c------cCC-------------CCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence 99875433111 0000 0 000 000011224788999999999999999999998888765
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-12 Score=121.83 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=76.8
Q ss_pred eeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 12 SVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..|+. |+++.+....... ......||+.|||||++ .+ ..+++++||||||+++|+|++ |+
T Consensus 158 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~~g~ 222 (291)
T 1u46_A 158 DLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESL------KT---------RTFSHASDTWMFGVTLWEMFTYGQ 222 (291)
T ss_dssp TEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTSC
T ss_pred CCEEEccccccccccccccchhhhccCCCCceeeCchhh------cC---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 457888 5566654433221 13357889999999998 22 456789999999999999999 99
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+..... . .+ ........+.+++.+||..+|.+||++.++.+.+.++
T Consensus 223 ~p~~~~~~~~~~~~~~~~~~-------~-~~------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 282 (291)
T 1u46_A 223 EPWIGLNGSQILHKIDKEGE-------R-LP------------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 282 (291)
T ss_dssp CTTTTCCHHHHHHHHHTSCC-------C-CC------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHccCC-------C-CC------------CCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHh
Confidence 99875443111 0000000 0 00 0011122478899999999999999999999888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 283 ~ 283 (291)
T 1u46_A 283 Q 283 (291)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-13 Score=132.14 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=55.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+..... .....||+.|||||++.... ....++.++|||||||++|+|++|+ |
T Consensus 163 ~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~-----------~~~~~~~~~Di~slG~il~~l~~g~~p 228 (327)
T 3aln_A 163 GNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSA-----------SRQGYDVRSDVWSLGITLYELATGRFP 228 (327)
T ss_dssp TEEEECCCSSSCC--------------------------------------------CCSHHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEccCCCceecccccc---cccCCCCccccCceeecccc-----------CcCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 457888 56666554322 34568999999999982211 1245778999999999999999999 9
Q ss_pred cchhhhh--heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID--YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|...... .+..+. ... .+. .+..........+.+++.+||..+|.+||++.++.+
T Consensus 229 f~~~~~~~~~~~~~~-~~~--------~~~--------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 229 YPKWNSVFDQLTQVV-KGD--------PPQ--------LSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp SSCC-------CCCC-CSC--------CCC--------CCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCcchHHHHHHHHh-cCC--------CCC--------CCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 9864321 111000 000 000 000000111224778999999999999999887654
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.1e-13 Score=124.74 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=71.8
Q ss_pred eeeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+.+ ++....... .....||+.|||||++ . +.++.++|||||||++|+|++|+ |
T Consensus 169 ~~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~------~----------~~~~~~~Di~slG~~l~~l~~g~~p 228 (290)
T 1t4h_A 169 GSVKIGDLGLATLKRASF----AKAVIGTPEFMAPEMY------E----------EKYDESVDVYAFGMCMLEMATSEYP 228 (290)
T ss_dssp SCEEECCTTGGGGCCTTS----BEESCSSCCCCCGGGG------G----------TCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeeCCCcccccccc----cccccCCcCcCCHHHH------h----------ccCCCcchHHHHHHHHHHHHhCCCC
Confidence 4678884 454433321 3467899999999987 2 35788999999999999999999 9
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|...... .+.... . ....+. .........+.+++.+||..+|.+||++.++.+
T Consensus 229 f~~~~~~~~~~~~~-~-------~~~~~~-----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 229 YSECQNAAQIYRRV-T-------SGVKPA-----------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp TTTCSSHHHHHHHH-T-------TTCCCG-----------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCcCcHHHHHHHH-h-------ccCCcc-----------ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 9763222 111000 0 000000 000111234788999999999999999887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-08 Score=99.81 Aligned_cols=237 Identities=10% Similarity=0.060 Sum_probs=158.1
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCC--CCceEEEEecCCcCeEEEEEe----cCCCCEEEEEcCCCcEEEEEccC
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYV----DEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
..+.++.++ ++++++++.|+.|.+||+. +++.+..+..... ...++|+ |++..++++...++++.++|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356788998 8999999999999999995 8888888876444 5789999 57777777777789999999877
Q ss_pred CCCCcceeeecc-------cCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCcee--EEecCCCCCeEEEEEe--C
Q 009274 325 PLGHEPLKKWNE-------EKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLS--CTMSGHKSAVSTLAVC--N 392 (538)
Q Consensus 325 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~--~ 392 (538)
.+....+..... +...... ....++++. +++....+|.|.++|....+.. ..+ .......++.|+ +
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva-~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdg 353 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVA-AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSH 353 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEE-EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTS
T ss_pred CcEEEEEeccccccccccccCCCceE-EEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCC
Confidence 654443332111 0011112 234455544 5666667799999998765432 222 234456788898 4
Q ss_pred CEEEEEe-cCCcEEEEECCCCceeEEEec-C---CCCceEEEEEEcCCCCEE-EEEe-CCCcEEEEeCCc---------c
Q 009274 393 GVLYSGS-RDGTIRLWSLSDHSLLTVLEE-D---SSGAVSSVLSLTAVQHTL-VVSH-ESGSIKVWRNDK---------F 456 (538)
Q Consensus 393 ~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l-~~~~-~dg~i~iwd~~~---------~ 456 (538)
+++++++ .++.|.++|+.+++.+..+.. . +.+... ..++|++..+ +++. .++.|.++|... .
T Consensus 354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~--~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv 431 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA--NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI 431 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE--EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce--eeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence 5665544 688999999999998777765 2 222222 2367875544 4443 468999998643 4
Q ss_pred eeeeccccce-E-EEEEeCCCEEEEEeC-------CCeEEEEecCCC
Q 009274 457 MKSMQTHKGS-V-FAVFLEGKWLFTGGW-------DKTVSVQELAGD 494 (538)
Q Consensus 457 ~~~~~~h~~~-v-~~~~~~~~~l~sgs~-------dg~v~iwd~~~~ 494 (538)
++++...... + ...+++++++.+... .+.|.++|+.+.
T Consensus 432 v~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 432 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 4555543222 1 334568998888763 359999999876
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-12 Score=128.21 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=76.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+.+.+... .....||+.|||||++ .| ...++.++|||||||++|+|++|+ |
T Consensus 179 ~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~p 241 (383)
T 3eb0_A 179 NTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELM------LG--------ATEYTPSIDLWSIGCVFGELILGKPL 241 (383)
T ss_dssp TEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHh------cC--------CCCCCcchhhhhHHHHHHHHHhCCCC
Confidence 468888 66776654432 4468999999999998 43 234789999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHH----------------hhhc-CccchHHHHHhhhhccCCC
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLE----------------NKFG-SEFVSLQLMFCQCLNFDPG 150 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~~~~l~~~~~~~l~~~p~ 150 (538)
|.+....... .+. + ....+. .+....... ...+ .....+.+++.+||..+|.
T Consensus 242 f~~~~~~~~~~~i~-~-------~~g~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 311 (383)
T 3eb0_A 242 FSGETSIDQLVRII-Q-------IMGTPT--KEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPD 311 (383)
T ss_dssp SCCSSHHHHHHHHH-H-------HHCCCC--HHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGG
T ss_pred CCCCChHHHHHHHH-H-------HhCCCC--HHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChh
Confidence 9875433111 000 0 000000 000000000 0000 1222378899999999999
Q ss_pred CCcchhhHHH
Q 009274 151 CRPLLTNVWK 160 (538)
Q Consensus 151 ~r~~~~~~~~ 160 (538)
+||++.++.+
T Consensus 312 ~R~t~~e~l~ 321 (383)
T 3eb0_A 312 LRINPYEAMA 321 (383)
T ss_dssp GSCCHHHHHT
T ss_pred hCCCHHHHhc
Confidence 9999887664
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-12 Score=121.97 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=76.8
Q ss_pred eeeeec--cccccccccchh--hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 12 SVAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
+.+|+. |+++.+.+.... .......||+.|||||++ .+ ..+++++||||||+++|+|++|.
T Consensus 165 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~~~ 229 (298)
T 3f66_A 165 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESL------QT---------QKFTTKSDVWSFGVLLWELMTRG 229 (298)
T ss_dssp CCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEECcccccccccccchhccccccCCCCCccccChHHh------cC---------CCCChHHHHHHHHHHHHHHHhCC
Confidence 457888 566665543321 123457889999999998 32 45778999999999999999955
Q ss_pred --ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 --QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+........ ... ........+.+++.+||+.+|.+||++.++.+.+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~-----~~~---------------~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 289 (298)
T 3f66_A 230 APPYPDVNTFDITVYLLQGR-----RLL---------------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289 (298)
T ss_dssp CCSSTTSCTTTHHHHHHTTC-----CCC---------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHhcCC-----CCC---------------CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 666543331110000000 000 0001122377899999999999999999999988877
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 290 ~ 290 (298)
T 3f66_A 290 F 290 (298)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-09 Score=117.12 Aligned_cols=241 Identities=12% Similarity=0.083 Sum_probs=148.3
Q ss_pred CCCcEEEEEEc--CCEEEEEeCC-----CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC--------
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFD-----KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG-------- 315 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------- 315 (538)
|...+.+++|+ |++|+.++.+ ..|++||+.+++.+... .+...+..++|+|+ ..+ +.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l-~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DAL-LYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEE-EEEECCCC-------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEE-EEEEecCcccccccc
Confidence 44467889999 8888877654 36999999999876532 12222357899997 555 4444443
Q ss_pred ------cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC-----cEEEEECCCC--ceeEEecCCC
Q 009274 316 ------GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-----TIKAWSLLDG--TLSCTMSGHK 382 (538)
Q Consensus 316 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~i~iwd~~~~--~~~~~~~~h~ 382 (538)
.|++|++.++.....+. +.............+++||++|+..+.++ .|++||+.++ +....+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv-~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPV-FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEEE-eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence 38899987654322221 11111111123457899999888777544 8999999877 4144555555
Q ss_pred CCeEEEEEe-CCEEEEEecC----CcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe--C-
Q 009274 383 SAVSTLAVC-NGVLYSGSRD----GTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--N- 453 (538)
Q Consensus 383 ~~v~~l~~~-~~~l~s~s~d----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--~- 453 (538)
..+....+. ++.|+..+.+ +.|.+||+.++. ....+..+....+ ..+.+. ++.++++...|+..++|. .
T Consensus 317 ~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l-~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 317 KAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNL-ESVGIA-GNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEE-EEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeE-EEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 545444444 6777766653 459999998752 3344443333333 224555 566778888898877774 3
Q ss_pred Ccceeeecc-ccceEEEEEe--CCCEEE-EEe---CCCeEEEEecCCCeeE
Q 009274 454 DKFMKSMQT-HKGSVFAVFL--EGKWLF-TGG---WDKTVSVQELAGDEFE 497 (538)
Q Consensus 454 ~~~~~~~~~-h~~~v~~~~~--~~~~l~-sgs---~dg~v~iwd~~~~~~~ 497 (538)
++....+.. +.+.+..+++ +++.++ +.+ ..++|++||+.+++..
T Consensus 395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 344555554 3566777765 666554 322 3478999999887743
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-12 Score=125.18 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=72.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+.+.. .....||+.|||||++ .+ ....+.++|||||||++|+|++|+ |
T Consensus 187 ~~~kL~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~el~~g~~p 248 (320)
T 3a99_A 187 GELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWI------RY--------HRYHGRSAAVWSLGILLYDMVCGDIP 248 (320)
T ss_dssp TEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHH------HH--------SCBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeeCcccccccccc----ccCCCCCccCCChHHh------cc--------CCCCCccchHHhHHHHHHHHHHCCCC
Confidence 468888 5566665442 4468899999999998 22 122367899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... . .... ......+.+++.+||+.+|.+||++.++.+
T Consensus 249 f~~~~~~~~~------~-----~~~~----------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 249 FEHDEEIIRG------Q-----VFFR----------------QRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp CCSHHHHHHC------C-----CCCS----------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCChhhhhcc------c-----cccc----------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9765322100 0 0000 011123778999999999999999887754
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-12 Score=129.50 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=43.9
Q ss_pred eeeeec--cccccccccchh--------------------hhhhhccccccccChHHHHHHHhhcCceeeeccccccccc
Q 009274 12 SVAKVG--CVGSRICDKEVG--------------------LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGY 69 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~ 69 (538)
+..|+. |+|+........ ..+++.+||+.|||||++ .+ ...++.
T Consensus 166 ~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~------~~--------~~~~~~ 231 (432)
T 3n9x_A 166 CSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELI------LL--------QENYTK 231 (432)
T ss_dssp CCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHH------TT--------CSCCCT
T ss_pred CCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHH------hc--------CCCCCc
Confidence 457888 677766543221 125679999999999997 22 255889
Q ss_pred cCcchhhhhhhhhhhhcC-ccc
Q 009274 70 GSDVWPVACILLSLLIGE-QFT 90 (538)
Q Consensus 70 ~sDi~slG~~l~~lltg~-pf~ 90 (538)
++|||||||+||||++|. ||.
T Consensus 232 ~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 232 SIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTC
T ss_pred ccccchHHHHHHHHHhcccccc
Confidence 999999999999999865 544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=7.1e-09 Score=100.15 Aligned_cols=256 Identities=10% Similarity=-0.031 Sum_probs=165.8
Q ss_pred CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc---------CCCcEEEEEccCCCCCcceeeecccC--C
Q 009274 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEK--D 339 (538)
Q Consensus 271 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~--~ 339 (538)
++.|.+.|..+++.+.++.....+ . ++++|++..++++.. .++.|.+||..+.+....+....... .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 579999999999999999876666 4 999998888776653 46789999998876554443221000 0
Q ss_pred ceeeeEEEEeecCCEEEEeeC--CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCC-Cce
Q 009274 340 WRYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD-HSL 414 (538)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~ 414 (538)
........+++||++++++.. ++.|.++|+.+++.+.++.... . ...+. ...+++.+.||++.+.++.+ ++.
T Consensus 136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 011224589999998888864 6899999999999998885322 1 22233 55777889999999999986 555
Q ss_pred eEEEecCC---CCceEEEEEE-cCCCCEEEEEeCCCcEEEEeCCcc----eeeec------------cccceEEEEEeCC
Q 009274 415 LTVLEEDS---SGAVSSVLSL-TAVQHTLVVSHESGSIKVWRNDKF----MKSMQ------------THKGSVFAVFLEG 474 (538)
Q Consensus 415 ~~~~~~~~---~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~------------~h~~~v~~~~~~~ 474 (538)
........ ......-..| .++|++++ .+.+|.+++.|.... ...+. .......++..++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 213 EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 33221110 1111111233 46776555 556899999996432 22221 1112235566677
Q ss_pred CEEEEEeC----------CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC--EEEEEE-CCCeEEEEEcC
Q 009274 475 KWLFTGGW----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGC-ADRTVKVYYYG 537 (538)
Q Consensus 475 ~~l~sgs~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~-~dg~v~vw~~~ 537 (538)
+.++.... .+.|.+.|+.+.+......... ....+.+.+|+ +|+++. .++.|.++|..
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-----EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-----CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 77777643 2579999999998776554321 13344555665 466654 58999999975
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-12 Score=124.07 Aligned_cols=110 Identities=19% Similarity=0.344 Sum_probs=74.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+...... .....||+.|||||++ .+ ..++.++|||||||+||+|++|+ |
T Consensus 178 ~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 240 (335)
T 2owb_A 178 LEVKIGDFGLATKVEYDGER--KKVLCGTPNYIAPEVL------SK---------KGHSFEVDVWSIGCIMYTLLVGKPP 240 (335)
T ss_dssp CCEEECCCTTCEECCSTTCC--BCCCCSCCSSCCHHHH------HT---------SCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeeccCceecccCccc--ccccCCCccccCHHHh------cc---------CCCCchhhHHHHHHHHHHHHHCcCC
Confidence 457888 556655433221 3458899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ..... .....+ .....+.+++.+||..+|.+||++.++.+
T Consensus 241 f~~~~~~~~~-----------------~~~~~-----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 241 FETSCLKETY-----------------LRIKK-----NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp TCCSSHHHHH-----------------HHHHH-----TCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCCCCHHHHH-----------------HHHhc-----CCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9865333111 00000 000000 11223778999999999999999988776
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-12 Score=133.82 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=76.6
Q ss_pred eeeeeec--cccccccccchhhh-hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVGLF-LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
+..+|+. |+++.+........ .....||+.|||||++ .+ ..++.++|||||||+||||+| |
T Consensus 472 ~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~------~~---------~~~~~~sDvwSlGv~l~ellt~G 536 (613)
T 2ozo_A 472 RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI------NF---------RKFSSRSDVWSYGVTMWEALSYG 536 (613)
T ss_dssp TTEEEECCCSTTTTCC--------------CCTTSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhh------cC---------CCCCcHHHHHHHHHHHHHHHHCC
Confidence 3568998 77777654432111 2235677999999998 22 567899999999999999998 9
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.......+. .+. +.. .+ .........+.+++.+||..+|.+||+..++.+.+..
T Consensus 537 ~~Pf~~~~~~~~~~~i~-~~~-------~~-------------~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~ 595 (613)
T 2ozo_A 537 QKPYKKMKGPEVMAFIE-QGK-------RM-------------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRA 595 (613)
T ss_dssp CCTTTTCCSHHHHHHHH-TTC-------CC-------------CCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH-cCC-------CC-------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence 9 99875433111 000 000 00 0001122347889999999999999999999888877
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
++
T Consensus 596 ~~ 597 (613)
T 2ozo_A 596 CY 597 (613)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-12 Score=120.72 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=78.1
Q ss_pred eeeeec--cccccccccchh--hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 12 SVAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
+..|+. |+++.+.+.... .......||+.|+|||++ .+ ..+++++|||||||++|+|++|.
T Consensus 161 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~ 225 (298)
T 3pls_A 161 FTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL------QT---------YRFTTKSDVWSFGVLLWELLTRG 225 (298)
T ss_dssp CCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHTS
T ss_pred CcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhh------cc---------CCCChhhchhhHHHHHHHHhhCC
Confidence 357888 566655443311 113357899999999999 44 56789999999999999999966
Q ss_pred --ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-hcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 --QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+... ........ .......+.+++.+||..+|.+||++.++.+.+.+
T Consensus 226 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~ 284 (298)
T 3pls_A 226 APPYRHIDPFDLTHF---------------------LAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQ 284 (298)
T ss_dssp CCTTTTSCGGGHHHH---------------------HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHH---------------------hhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 4544333211100 00000000 00112237789999999999999999999888877
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
+.
T Consensus 285 ~~ 286 (298)
T 3pls_A 285 IV 286 (298)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-12 Score=125.76 Aligned_cols=64 Identities=22% Similarity=0.414 Sum_probs=47.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+.+.. .....||+.|||||++ .+ ..++.++|||||||++|+|++|+ |
T Consensus 169 ~~~kl~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 229 (360)
T 3eqc_A 169 GEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVEMAVGRYP 229 (360)
T ss_dssp CCEEECCCCCCHHHHHHC--------CCCCTTCCHHHH------TT---------CCCSHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCccccccc----ccCCCCCCCeECHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 5555554332 4468999999999999 44 56789999999999999999999 9
Q ss_pred cchhhh
Q 009274 89 FTKELI 94 (538)
Q Consensus 89 f~~~~~ 94 (538)
|.....
T Consensus 230 f~~~~~ 235 (360)
T 3eqc_A 230 IPPPDA 235 (360)
T ss_dssp SSCCCH
T ss_pred CCCCCH
Confidence 986543
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-12 Score=121.75 Aligned_cols=111 Identities=18% Similarity=0.324 Sum_probs=74.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++........ .....||+.|+|||++ .+ ..++.++||||||+++|+|++|+ |
T Consensus 152 ~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~l~~g~~p 214 (294)
T 2rku_A 152 LEVKIGDFGLATKVEYDGER--KKVLCGTPNYIAPEVL------SK---------KGHSFEVDVWSIGCIMYTLLVGKPP 214 (294)
T ss_dssp CCEEECCCTTCEECCSTTCC--BCCCCSCCSSCCHHHH------TT---------SCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEEeccCceecccCccc--cccccCCCCcCCcchh------cc---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 455554432221 3457899999999998 43 45678999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|......... .+. .. .... .......+.+++.+||..+|.+||++.++.+.
T Consensus 215 ~~~~~~~~~~~~~~--~~-----~~~~---------------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 215 FETSCLKETYLRIK--KN-----EYSI---------------PKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp TCCSSHHHHHHHHH--TT-----CCCC---------------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred CCCCCHHHHHHHHh--hc-----cCCC---------------ccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 9875333111 000 00 0000 00111237789999999999999999887763
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-13 Score=125.60 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=64.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++....... .....||+.|||||++ .+ ......+++++|||||||++|+|+||+ |
T Consensus 147 ~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~------~~-----~~~~~~~~~~~Di~slG~il~~l~~g~~p 212 (290)
T 3fme_A 147 GQVKMCDFGISGYLVDDVA---KDIDAGCKPYMAPERI------NP-----ELNQKGYSVKSDIWSLGITMIELAILRFP 212 (290)
T ss_dssp CCEEBCCC------------------CCCCCCSCHHHH------SC-----CTTC--CCHHHHHHHHHHHHHHHHHTSCS
T ss_pred CCEEEeecCCccccccccc---ccccCCCccccChhhc------Ch-----hhcCcCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 457888 55666554432 3346899999999997 21 012356788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh-hhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ........... ........+.+++.+||+.+|.+||++.++.+
T Consensus 213 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 213 YDSWGTPFQQ-------------------LKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp SCCCSCHHHH-------------------HHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccccCchHHH-------------------HHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 9752111000 00000000000 00011224778999999999999999887765
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-12 Score=120.09 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=47.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-+|+. |+++....... ..+...||+.|||||++ .+ ...++.++|||||||++|+|++|. |
T Consensus 138 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~~~~p 201 (292)
T 3o0g_A 138 GELKLANFGLARAFGIPVR--CYSAEVVTLWYRPPDVL------FG--------AKLYSTSIDMWSAGCIFAELANAGRP 201 (292)
T ss_dssp SCEEECCCTTCEECCSCCS--CCCSCCSCGGGCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHTTTSCC
T ss_pred CCEEEeecccceecCCccc--cccCCccccCCcChHHH------cC--------CCCcCchHHHHHHHHHHHHHHHcCCC
Confidence 457888 56666543322 24568999999999999 43 133789999999999999999988 7
Q ss_pred c
Q 009274 89 F 89 (538)
Q Consensus 89 f 89 (538)
|
T Consensus 202 ~ 202 (292)
T 3o0g_A 202 L 202 (292)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-12 Score=122.66 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=73.0
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+.............||+.|+|||++ .+ ....+.++||||||+++|+|++|+ |
T Consensus 142 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~g~~p 207 (276)
T 2yex_A 142 DNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL------KR--------REFHAEPVDVWSCGIVLTAMLAGELP 207 (276)
T ss_dssp CCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGG------TC--------SSBCHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEeeCCCccccCCCcchhcccCCccccCccChHHH------hc--------CCCCCCcchHHHHHHHHHHHHhCCCC
Confidence 457888 455554433222224568999999999998 33 122367899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|................. .... ........+.+++.+||..+|.+||++.++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~------~~~~------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 208 WDQPSDSCQEYSDWKEKK------TYLN------------PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp CSCSCTTSHHHHHHHTTC------TTST------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCchHHHHHHHhhhcc------cccC------------chhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 986533200000000000 0000 00111223778999999999999999877654
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-12 Score=121.90 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=66.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++....... ......||+.|||||++.... .....+++++|||||||++|+|++|+ |
T Consensus 166 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~----------~~~~~~~~~~Di~slG~il~~l~~g~~p 233 (326)
T 2x7f_A 166 AEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDE----------NPDATYDFKSDLWSLGITAIEMAEGAPP 233 (326)
T ss_dssp CCEEECCCTTTC---------------CCGGGCCHHHHC------------------CCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeeCcCceecCcCcc--ccccccCCccccChhhhcccc----------ccCcCCCccchHHHHHHHHHHHHhCCCC
Confidence 457888 45555543321 134678999999999982111 01356788999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh--hhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN--KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ......+.. ........+.+++.+||..+|.+||++.++.+
T Consensus 234 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 234 LCDMHPMRAL---------------------FLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp TTTSCHHHHH---------------------HHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCCCcHHHHH---------------------HHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 9765333111 000000000 00111234788999999999999999887765
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-12 Score=121.84 Aligned_cols=110 Identities=21% Similarity=0.287 Sum_probs=53.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+++........ .....||+.|||||++ .+ ..+++++||||||+++|+|++|+ |
T Consensus 149 ~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 211 (278)
T 3cok_A 149 MNIKIADFGLATQLKMPHEK--HYTLCGTPNYISPEIA------TR---------SAHGLESDVWSLGCMFYTLLIGRPP 211 (278)
T ss_dssp CCEEECCCTTCEECC---------------------------------------------CTHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEeecceeeccCCCCc--ceeccCCCCcCCcchh------cC---------CCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 455555432221 3357899999999998 33 45678999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .+... ....+. .....+.+++.+||..+|.+||++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~-------~~~~~~---------------~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 212 FDTDTVKNTLNKVVLA-------DYEMPS---------------FLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp SCCCSCC-----CCSS-------CCCCCT---------------TSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCChhHHHHHHHHhhc-------ccCCcc---------------ccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 9875433111 00000 000000 01123778999999999999999877654
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-12 Score=125.75 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=39.5
Q ss_pred hccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhh
Q 009274 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKEL 93 (538)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~ 93 (538)
..+||+.|||||++ .+ ....++.++|||||||+||+|++|+ ||.+..
T Consensus 194 ~~~gt~~y~aPE~~------~~-------~~~~~~~~~DiwslG~il~el~~g~~pf~~~~ 241 (389)
T 3gni_B 194 YSVKVLPWLSPEVL------QQ-------NLQGYDAKSDIYSVGITACELANGHVPFKDMP 241 (389)
T ss_dssp TCTTTGGGSCHHHH------ST-------TSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred cccccccccCHHHH------hc-------cCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCC
Confidence 46899999999999 33 1245789999999999999999999 998743
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-12 Score=123.14 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=48.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++....... .....||+.|||||++ .+ ...++.++|||||||+||+|++|+ ||
T Consensus 169 ~~kl~Dfg~a~~~~~~~~---~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~p~ 231 (330)
T 3nsz_A 169 KLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELL------VD--------YQMYDYSLDMWSLGCMLASMIFRKEPF 231 (330)
T ss_dssp EEEECCCTTCEECCTTCC---CCSCCSCGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred EEEEEeCCCceEcCCCCc---cccccccccccChhhh------cC--------CCcCCchhhHHHHHHHHHHHHhCCCCc
Confidence 57888 66666654432 4567999999999998 32 245788999999999999999999 99
Q ss_pred ch
Q 009274 90 TK 91 (538)
Q Consensus 90 ~~ 91 (538)
..
T Consensus 232 ~~ 233 (330)
T 3nsz_A 232 FH 233 (330)
T ss_dssp SC
T ss_pred cc
Confidence 54
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-12 Score=133.98 Aligned_cols=120 Identities=15% Similarity=0.197 Sum_probs=76.5
Q ss_pred eeeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
+..+|+. |+|+.+...... ...+...||+.|||||++ .+ ..++.++|||||||+||||++ |
T Consensus 505 ~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~------~~---------~~~~~~sDvwSlGv~l~ellt~G 569 (635)
T 4fl3_A 505 QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI------NY---------YKFSSKSDVWSFGVLMWEAFSYG 569 (635)
T ss_dssp TTEEEECCTTHHHHTTC-------------CGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEEcCCccccccCccccccccCCCCceeeeChhhh------cC---------CCCCcHHHHHHHHHHHHHHHhCC
Confidence 3468898 677766544321 113346788999999999 22 567899999999999999999 9
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.+.....+. .+. +.. ... ........+.+++.+||..+|.+||+..++.+.+..
T Consensus 570 ~~Pf~~~~~~~~~~~i~-~~~-----~~~---------------~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~ 628 (635)
T 4fl3_A 570 QKPYRGMKGSEVTAMLE-KGE-----RMG---------------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRN 628 (635)
T ss_dssp CCSSTTCCHHHHHHHHH-TTC-----CCC---------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH-cCC-----CCC---------------CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence 9 99875443111 000 000 000 000112247889999999999999999999888776
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
+.
T Consensus 629 ~~ 630 (635)
T 4fl3_A 629 YY 630 (635)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=8e-12 Score=121.77 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=71.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++..... .+...||+.|||||++ .+ ...++.++|||||||++|+|++|+ |
T Consensus 163 ~~~kl~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~el~~g~~p 223 (353)
T 3coi_A 163 CELKILDFGLARHADAE-----MTGYVVTRWYRAPEVI------LS--------WMHYNQTVDIWSVGCIMAEMLTGKTL 223 (353)
T ss_dssp CCEEECSTTCTTC-------------CCSBCCSCHHHH------SC--------CSCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEeecccccCCCCC-----ccccccCcCcCCHHHH------hC--------cCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 457888 555655433 3468999999999998 33 245788999999999999999999 9
Q ss_pred cchhhhhhee-ec-cccccC-cchhhcchhhH-HHHHHHHHHHh-------hhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 89 FTKELIDYIR-CV-STKASD-DNIACLGMYMA-WMEKVTYLLEN-------KFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 89 f~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
|.+....... .+ ...... ..+ ....... ........+.. ........+.+++.+||..+|.+||++.+
T Consensus 224 f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e 302 (353)
T 3coi_A 224 FKGKDYLDQLTQILKVTGVPGTEF-VQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQ 302 (353)
T ss_dssp SBSSCHHHHHHHHHHHHCBCCHHH-HTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCHHH-HHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHH
Confidence 9875433111 00 000000 000 0000000 00000000000 00112334889999999999999999887
Q ss_pred HHH
Q 009274 158 VWK 160 (538)
Q Consensus 158 ~~~ 160 (538)
+.+
T Consensus 303 ~l~ 305 (353)
T 3coi_A 303 ALT 305 (353)
T ss_dssp HHT
T ss_pred Hhc
Confidence 654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-08 Score=97.50 Aligned_cols=242 Identities=14% Similarity=0.076 Sum_probs=150.0
Q ss_pred ecCCCcEEEEEEc--CCEEEE-------EeCCCcEEEEeCCCCceEEEEe----cCCcCeEEEEEecCCCCEEEEEcCCC
Q 009274 249 QGHRDCVTGLAVG--GGFLFS-------SSFDKSIHVWSLKDFSHVHTFK----GHDHKVMAVVYVDEDQPLCISGDSGG 315 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~~dg 315 (538)
...-....+++|+ +..+++ +..++.|.+||..+++...... ++...+.++++.++++.++++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 3344556788997 666666 5778999999988877643222 14467899999886355555444 44
Q ss_pred cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC---------------CcEEEEECCCCceeEEecC
Q 009274 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD---------------RTIKAWSLLDGTLSCTMSG 380 (538)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---------------g~i~iwd~~~~~~~~~~~~ 380 (538)
.|.+||.. ++....................++.+++++.++...+ +.|..||.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 78889976 3321110110001111112345677888877766554 578888865 5543332 2
Q ss_pred CCCCeEEEEEe----CC--EEEEE-ecCCcEEEEECC-CCcee--EEEec-CCCC-ceEEEEEEcCCCCEEEEEeCCCcE
Q 009274 381 HKSAVSTLAVC----NG--VLYSG-SRDGTIRLWSLS-DHSLL--TVLEE-DSSG-AVSSVLSLTAVQHTLVVSHESGSI 448 (538)
Q Consensus 381 h~~~v~~l~~~----~~--~l~s~-s~dg~i~iwd~~-~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~dg~i 448 (538)
+......++++ ++ .++.+ ..++.|.+||.. +++.. ..+.. .... .....++++++|+++++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 33456788887 44 45444 567899999986 44321 11111 1111 223347899999988888888999
Q ss_pred EEEeCC--cceeeeccccceEEEEEe--CCCEEE-EEeCCCeEEEEecCCC
Q 009274 449 KVWRND--KFMKSMQTHKGSVFAVFL--EGKWLF-TGGWDKTVSVQELAGD 494 (538)
Q Consensus 449 ~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~-sgs~dg~v~iwd~~~~ 494 (538)
.+||.. +....+..+...+.++.+ +++.|+ +...++.|..|++...
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999965 455556666667788876 777554 4555689999998753
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-12 Score=123.37 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=73.1
Q ss_pred eeeecc--ccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVGC--VGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+.+ +++....... .....||+.|+|||++ .| .++.++||||||+++|+|++|+ ||
T Consensus 162 ~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~----------~~~~~~Di~slG~~l~~l~~g~~p~ 222 (287)
T 2wei_A 162 DIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVL------RG----------TYDEKCDVWSAGVILYILLSGTPPF 222 (287)
T ss_dssp CEEECSTTGGGTBCCCSS---CSCHHHHHTTCCHHHH------TT----------CCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEeccCcceeecCCCc---cccccCcccccChHHh------cC----------CCCCchhhHhHHHHHHHHHhCCCCC
Confidence 578884 4555543322 3456799999999998 33 4778999999999999999999 99
Q ss_pred chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
.......+. .+... . .....+ ........+.+++.+||..+|.+||++.++.+
T Consensus 223 ~~~~~~~~~~~~~~~-~-----~~~~~~------------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 223 YGKNEYDILKRVETG-K-----YAFDLP------------QWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp CCSSHHHHHHHHHHC-C-----CCCCSG------------GGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHHHHHHcC-C-----CCCCch------------hhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 875433111 00000 0 000000 00111223778999999999999999988765
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-12 Score=128.62 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=31.3
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
+++.+||+.|||||++ .+ ...++.++|||||||+||||+||
T Consensus 240 ~~~~~gt~~Y~aPE~~------~~--------~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 240 LTGHVVTRWYRAPELI------LL--------QENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp -----CCCTTCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccccccChHHh------hC--------CCCCCcHhHHHHHHHHHHHHHHh
Confidence 5678999999999987 22 25588999999999999999993
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.8e-12 Score=119.04 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=74.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++.+.+... ......||+.|+|||++ .+ ..++.++||||||+++|+|++|+ |
T Consensus 162 ~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p 224 (314)
T 3com_A 162 GHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVI------QE---------IGYNCVADIWSLGITAIEMAEGKPP 224 (314)
T ss_dssp CCEEECCCTTCEECBTTBS--CBCCCCSCGGGCCHHHH------SS---------SCBCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeecccchhhhhhcc--ccCccCCCCCccChhhc------CC---------CCCCccccHHHHHHHHHHHHhCCCC
Confidence 457888 45555544322 13457899999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .+...... .... .......+.+++.+||..+|.+||++.++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~----~~~~---------------~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 225 YADIHPMRAIFMIPTNPPP----TFRK---------------PELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp TTTSCHHHHHHHHHHSCCC----CCSS---------------GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCCChHHHHHHHhcCCCc----ccCC---------------cccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 9764332110 00000000 0000 0001123778999999999999999887765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-09 Score=102.51 Aligned_cols=257 Identities=11% Similarity=0.005 Sum_probs=169.2
Q ss_pred CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc---------CCCcEEEEEccCCCCCcceeeecccC--Cc
Q 009274 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEK--DW 340 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~--~~ 340 (538)
+.|.++|..+++.+.++.....+ .++++|+++.++++.. .++.|.++|..+.+....+....... ..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 68999999999999999876666 8999998888877653 46799999998876554443210000 00
Q ss_pred eeeeEEEEeecCCEEEEeeC--CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEE
Q 009274 341 RYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTV 417 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~ 417 (538)
....-..+++||++++++.. ++.|.+.|+.+++.+.++.... ...+.-. ...+++.+.||.+.+.+..+++....
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 01113489999999998874 5789999999999988886422 1222222 45777888999999999966665532
Q ss_pred E----ecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc-e---eeec------------cccceEEEEEeCCCEE
Q 009274 418 L----EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF-M---KSMQ------------THKGSVFAVFLEGKWL 477 (538)
Q Consensus 418 ~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~---~~~~------------~h~~~v~~~~~~~~~l 477 (538)
. ... .........+.+++..++.....+.+.+.|.... . ..+. ........++++++.+
T Consensus 255 ~~~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rl 333 (426)
T 3c75_H 255 NTEVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRI 333 (426)
T ss_dssp ECCCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEE
T ss_pred eeeeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEE
Confidence 2 111 1111112467888888877788899999995321 1 1111 0111123667787776
Q ss_pred EEEeC----------CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCC--EEEEEE-CCCeEEEEEcCC
Q 009274 478 FTGGW----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGC-ADRTVKVYYYGK 538 (538)
Q Consensus 478 ~sgs~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~-~dg~v~vw~~~~ 538 (538)
++... ++.|.++|+.+.+......... ......+.+|+ +++++. .++.|.++|..+
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 66542 3579999999998766554221 13344455555 467776 599999999753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-09 Score=111.14 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=173.2
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcC-----------eEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK-----------VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 260 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
..++.++.++.++.|..+|..+|+.+..+...... ...+++ .+..++.++.|+.+..+|..+++..
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL---WKGKVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE---ECCEEEEEcCCCEEEEEECCCCCEE
Confidence 34788888888999999999999999998754321 122333 2346677888999999999988765
Q ss_pred cceeee-cccCCceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCC-----------------
Q 009274 329 EPLKKW-NEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSA----------------- 384 (538)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~----------------- 384 (538)
...... .......... .....+..+++++. ++.|+.||..+|+.++.+......
T Consensus 152 W~~~~~~~~~~~~~~~~--~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITG--APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCS--CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCccccc--CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 444322 1000000000 11112556666654 699999999999999887542211
Q ss_pred ---------------eEEEEEe--CCEEEEEecCC-------------------cEEEEECCCCceeEEEecCCCC----
Q 009274 385 ---------------VSTLAVC--NGVLYSGSRDG-------------------TIRLWSLSDHSLLTVLEEDSSG---- 424 (538)
Q Consensus 385 ---------------v~~l~~~--~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~---- 424 (538)
...++++ .+.++.++.++ .|..+|.++|+.+..+...+..
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 1245666 56888777664 5999999999999887753221
Q ss_pred ---ceEEEEEEcCCC---CEEEEEeCCCcEEEEeC--Ccceeeecccc-----------ce-------------------
Q 009274 425 ---AVSSVLSLTAVQ---HTLVVSHESGSIKVWRN--DKFMKSMQTHK-----------GS------------------- 466 (538)
Q Consensus 425 ---~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~--~~~~~~~~~h~-----------~~------------------- 466 (538)
..........+| ..++.++.+|.++++|. ++.+..+.... .+
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 111112344467 68899999999999994 44443332110 01
Q ss_pred -------EEEEEeCCCEEEEEeC-------------------------------------------CCeEEEEecCCCee
Q 009274 467 -------VFAVFLEGKWLFTGGW-------------------------------------------DKTVSVQELAGDEF 496 (538)
Q Consensus 467 -------v~~~~~~~~~l~sgs~-------------------------------------------dg~v~iwd~~~~~~ 496 (538)
-.++++++.++++... .|.|..||+.+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1234456677776543 27899999999998
Q ss_pred EeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcCC
Q 009274 497 EEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~~ 538 (538)
............ ..+...++.+++++.||.+++||..+
T Consensus 470 ~W~~~~~~~~~~----g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 470 AWSVEHVSPWNG----GTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTT
T ss_pred EeecCCCCCCcC----cceEeCCCEEEEECCCCcEEEEECCC
Confidence 877665322111 12334577888899999999999753
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-09 Score=99.31 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=142.7
Q ss_pred CCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC
Q 009274 281 DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360 (538)
Q Consensus 281 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 360 (538)
.+..+..+..+.....+++|+|+++.+++++..++.|..||..++ ...+.... ......+++++++++++...
T Consensus 16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~--~~~~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPS--HHQNGHCLNKQGHLIACSHG 88 (296)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSC--SSEEEEEECTTCCEEEEETT
T ss_pred CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCC--CCcceeeECCCCcEEEEecC
Confidence 344556666677788999999977768899999999999998764 22222211 11234577888988777777
Q ss_pred CCcEEEEECCCCceeEEecCC----CCCeEEEEEe--CCEEEE----Ee-------------cCCcEEEEECCCCceeEE
Q 009274 361 DRTIKAWSLLDGTLSCTMSGH----KSAVSTLAVC--NGVLYS----GS-------------RDGTIRLWSLSDHSLLTV 417 (538)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~s----~s-------------~dg~i~iwd~~~~~~~~~ 417 (538)
++.|.+||..+++........ ...+.+++++ ++++++ |+ ..+.|..+|.. ++. ..
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~ 166 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SA 166 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EE
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EE
Confidence 789999999888754433211 2346678888 345555 22 13456666654 443 33
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cc---eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEE
Q 009274 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KF---MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQ 489 (538)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~---~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iw 489 (538)
+... ... ...++++|+++.+++.+.++.|.+||.. +. ...+..+...+.++.+ +|+++++. ++.|.+|
T Consensus 167 ~~~~-~~~-~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 167 PIRD-RVK-PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp EECC-CSS-EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred eecC-CCC-CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 3322 222 2347999999998777778999999954 22 1222223333445555 77766655 8899999
Q ss_pred ecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCC
Q 009274 490 ELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADR 529 (538)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg 529 (538)
|..+... ...... .. +..+.+. +++ .|++++.++
T Consensus 243 ~~~g~~~-~~~~~~----~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 243 TPDGDEL-GRVLTP----QT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CTTSCEE-EEEECS----SC-CCEEEEESTTSCEEEEEETTE
T ss_pred CCCCCEE-EEEECC----CC-ceeEEEECCCCCEEEEEcCCe
Confidence 9975433 332221 22 3333342 344 577877764
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-12 Score=132.68 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=77.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++.+.+... ...+...||+.|||||++ .+ ..++.++|||||||+||||++ |.
T Consensus 527 ~~~vkL~DFG~a~~~~~~~~-~~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~ellt~g~ 590 (656)
T 2j0j_A 527 NDCVKLGDFGLSRYMEDSTY-YKASKGKLPIKWMAPESI------NF---------RRFTSASDVWMFGVCMWEILMHGV 590 (656)
T ss_dssp TTEEEECCCCCCCSCCC-----------CCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEecCCCeecCCCcc-eeccCCCCCcceeCHHHh------cC---------CCCCchhhHHHHHHHHHHHHHcCC
Confidence 3568888 67777654432 223457789999999998 22 457789999999999999997 88
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh-hhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.....+. ..+...... ........+.+++.+||..+|.+||++.++.+.+..+
T Consensus 591 ~Pf~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 591 KPFQGVKNNDVI---------------------GRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp CTTTTCCHHHHH---------------------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH---------------------HHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 99875433111 000000000 0011223478899999999999999999999888876
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 650 l 650 (656)
T 2j0j_A 650 L 650 (656)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-12 Score=120.40 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=64.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....||+.|+|||++ .+ ....++++||||||+++|+|++|+ |
T Consensus 148 ~~~~l~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~~l~~l~~g~~p 210 (276)
T 2h6d_A 148 MNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVI------SG--------RLYAGPEVDIWSCGVILYALLCGTLP 210 (276)
T ss_dssp SCEEECCCCGGGCCCC----------------CCTGGG------TT--------SCCCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEeecccccccCCCcc---eecccCCccccCHHHH------cC--------CCCCCccchHHHHHHHHHHHHhCCCC
Confidence 457888 55565554332 4467899999999998 33 122367999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~ 161 (538)
|.......+. ....... ...+ .....+.+++.+||..+|.+||++.++.++
T Consensus 211 ~~~~~~~~~~-----------------~~~~~~~-----~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 211 FDDEHVPTLF-----------------KKIRGGV-----FYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp SCCSSHHHHH-----------------HHHHHCC-----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred CCCCcHHHHH-----------------HHhhcCc-----ccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 9765333111 0000000 0000 112247789999999999999999888763
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-12 Score=122.90 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=69.7
Q ss_pred hhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhh
Q 009274 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (538)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (538)
....||+.|||||++ .+ .....+++++|||||||++|+|++|+ ||......... .
T Consensus 201 ~~~~gt~~y~aPE~~------~~------~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------------~ 256 (317)
T 2buj_A 201 AAQRCTISYRAPELF------SV------QSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS------------V 256 (317)
T ss_dssp HHHHSCGGGCCGGGS------SC------CSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSC------------H
T ss_pred ccccCCcccCCHhHh------cc------CCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccch------------h
Confidence 357899999999998 33 11234678999999999999999999 99764322000 0
Q ss_pred cchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
.. .... .............+.+++.+||..+|.+||++.++.+.+..+.
T Consensus 257 ~~---~~~~---~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 257 AL---AVQN---QLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp HH---HHHC---C--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred hH---Hhhc---cCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 00 0000 0000000112234788999999999999999999999888765
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-12 Score=130.03 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=81.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++.+.+.... ......||+.|||||++ .+ ..++.++|||||||+||||+| |+
T Consensus 399 ~~~~kl~DFG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~sDvwSlGv~l~el~t~g~ 462 (535)
T 2h8h_A 399 NLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAA------LY---------GRFTIKSDVWSFGILLTELTTKGR 462 (535)
T ss_dssp GGCEEECCTTSTTTCCCHHHH-TTCSTTSCGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCcEEEcccccceecCCCcee-cccCCcCcccccCHHHh------cc---------CCCCchhhHHHHHHHHHHHHhCCC
Confidence 3468898 677777654322 23356788999999998 22 567889999999999999999 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.....+. .+. . . ..+. ........+.+++.+||..+|.+||+..++.+.+..+
T Consensus 463 ~P~~~~~~~~~~~~i~-~-~------~~~~-------------~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~ 521 (535)
T 2h8h_A 463 VPYPGMVNREVLDQVE-R-G------YRMP-------------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 521 (535)
T ss_dssp CSSTTCCHHHHHHHHH-T-T------CCCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHH-c-C------CCCC-------------CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 99875433111 000 0 0 0000 0001122377899999999999999999999888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 522 ~ 522 (535)
T 2h8h_A 522 F 522 (535)
T ss_dssp S
T ss_pred h
Confidence 5
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-12 Score=118.53 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=70.3
Q ss_pred eeeeecccc--ccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVGCVG--SRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+.+++ +...... .......||+.|||||++...... ...++.++||||||+++|+|++|+ |
T Consensus 154 ~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~----------~~~~~~~~Di~slG~il~~l~~g~~p 221 (302)
T 2j7t_A 154 GDIRLADFGVSAKNLKTL--QKRDSFIGTPYWMAPEVVMCETMK----------DTPYDYKADIWSLGITLIEMAQIEPP 221 (302)
T ss_dssp SCEEECCCHHHHHHHHHH--HC-----CCGGGCCHHHHHHHHTT----------STTTTTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEEECCCCccccccc--cccccccCChhhcCCeeeccccCC----------CCCCchhhhHHHHHHHHHHHhcCCCC
Confidence 457888554 3322221 113457899999999998443222 245778999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... .+...... .... .......+.+++.+||..+|.+||++.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~----~~~~---------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 222 HHELNPMRVLLKIAKSDPP----TLLT---------------PSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp TTTSCHHHHHHHHHHSCCC----CCSS---------------GGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred CccCCHHHHHHHHhccCCc----ccCC---------------ccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 9865433111 00000000 0000 0011123778999999999999999877654
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-12 Score=127.19 Aligned_cols=118 Identities=18% Similarity=0.275 Sum_probs=68.0
Q ss_pred eeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 13 VAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
.+|+. |+|+.+...... ...+..+||+.|||||++ .+ .....++.++|||||||+||+|+| |.
T Consensus 161 ~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l------~~------~~~~~~t~~~DiwSlG~il~ellt~g~~ 228 (432)
T 3p23_A 161 KAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEML------SE------DCKENPTYTVDIFSAGCVFYYVISEGSH 228 (432)
T ss_dssp CEEECCTTEEECC------------CCSCTTSCCGGGT------SC------C---CCCTHHHHHHHHHHHHHHHTTSCB
T ss_pred eEEEecccceeeccCCCcceeeccccCCCcCccChhhh------hc------ccccCCCcHHHHHHHHHHHHHHHcCCCC
Confidence 36788 667766543221 123468899999999998 32 012456779999999999999999 88
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||..........+..... ........ ..+. .+.+++.+||+.+|.+||++.++.+
T Consensus 229 pf~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~-----------~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 229 PFGKSLQRQANILLGACS---LDCLHPEK----HEDV-----------IARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp TTBSTTTHHHHHHTTCCC---CTTSCTTC----HHHH-----------HHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CcchhhHHHHHHHhccCC---ccccCccc----cccH-----------HHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 997643331110000000 00000000 0111 1567999999999999999877653
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.5e-12 Score=120.15 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=80.6
Q ss_pred eeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..|+. |+++........ .......||+.|||||++ .+ ..++.++||||||+++|+|+||.
T Consensus 182 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~tg~~ 246 (326)
T 2w1i_A 182 NRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESL------TE---------SKFSVASDVWSFGVVLYELFTYIE 246 (326)
T ss_dssp TEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEecCcchhhccccccccccccCCCCceeEECchhh------cC---------CCCCchhhHHHHHHHHHHHHhcCC
Confidence 457888 566665543221 112346788999999998 32 45678999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhh-----hcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENK-----FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||............ ................... .......+.+++.+||+.+|.+||++.++.+.+
T Consensus 247 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L 317 (326)
T 2w1i_A 247 KSKSPPAEFMRMIG---------NDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRV 317 (326)
T ss_dssp GGGSHHHHHHHHHC---------TTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred CCCCCHHHHHHhhc---------cccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence 88754322111000 0000000111111111111 012223588999999999999999999998887
Q ss_pred HHhh
Q 009274 163 RELI 166 (538)
Q Consensus 163 ~~l~ 166 (538)
.++.
T Consensus 318 ~~l~ 321 (326)
T 2w1i_A 318 DQIR 321 (326)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=121.41 Aligned_cols=124 Identities=10% Similarity=0.104 Sum_probs=67.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++....... .....||+.|||||++ .+ ...+++++|||||||++|+|++|+ |
T Consensus 171 ~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~p 233 (362)
T 3pg1_A 171 NDITICDFNLAREDTADAN---KTHYVTHRWYRAPELV------MQ--------FKGFTKLVDMWSAGCVMAEMFNRKAL 233 (362)
T ss_dssp CCEEECCTTC------------------CGGGCCHHHH------TT--------CTTCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEecCcccccccccc---cceecccceecCcHHh------cC--------CCCCCcHhHHHhHHHHHHHHHhCCCC
Confidence 457888 55554443322 4468999999999998 32 245788999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHH------HHHHHHHHH------------hhhcCccchHHHHHhhhhccCC
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAW------MEKVTYLLE------------NKFGSEFVSLQLMFCQCLNFDP 149 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~~~~~l~~~~~~~l~~~p 149 (538)
|.+....... .+.. ....+... ......... ...+.....+.+++.+||..+|
T Consensus 234 f~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP 305 (362)
T 3pg1_A 234 FRGSTFYNQLNKIVE--------VVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNP 305 (362)
T ss_dssp CCCSSHHHHHHHHHH--------HHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSG
T ss_pred CCCCCHHHHHHHHHH--------HcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCCh
Confidence 9875433111 0000 00000000 000000000 0001122347889999999999
Q ss_pred CCCcchhhHHH
Q 009274 150 GCRPLLTNVWK 160 (538)
Q Consensus 150 ~~r~~~~~~~~ 160 (538)
.+||++.++.+
T Consensus 306 ~~Rpt~~ell~ 316 (362)
T 3pg1_A 306 QRRISTEQALR 316 (362)
T ss_dssp GGSCCHHHHHT
T ss_pred hhCCCHHHHHc
Confidence 99999887665
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-12 Score=121.61 Aligned_cols=134 Identities=21% Similarity=0.248 Sum_probs=74.1
Q ss_pred eeeeec--cccccccccchh--------hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhh
Q 009274 12 SVAKVG--CVGSRICDKEVG--------LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILL 81 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~--------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~ 81 (538)
+..|+. |+++.+...... ......+||+.|||||++ .+ ...++.++|||||||+||
T Consensus 149 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~ 214 (353)
T 2b9h_A 149 CDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVM------LT--------SAKYSRAMDVWSCGCILA 214 (353)
T ss_dssp CCEEECCCTTCEECC----------------CCCCCCGGGCCHHHH------HS--------CCCCCHHHHHHHHHHHHH
T ss_pred CcEEEEecccccccccccccccCccccccchhhccccccccCCeee------cc--------CCCccchhhHHHHHHHHH
Confidence 457888 556655432211 013347899999999998 22 245788999999999999
Q ss_pred hhhhcC-ccchhhhhhee-e----ccccccCcchhhcchhhHHHHHHHHHH-------HhhhcCccchHHHHHhhhhccC
Q 009274 82 SLLIGE-QFTKELIDYIR-C----VSTKASDDNIACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFD 148 (538)
Q Consensus 82 ~lltg~-pf~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~ 148 (538)
+|++|+ ||.+....... . ............. ......+.....+ ....+.....+.+++.+||..+
T Consensus 215 ~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d 293 (353)
T 2b9h_A 215 ELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCI-ESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFD 293 (353)
T ss_dssp HHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTC-CCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSS
T ss_pred HHHhCCCCCCCCCcHHHHHHHHHHhCCCchhcccccc-ccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcC
Confidence 999999 99875432111 0 0000000000000 0000001000000 0001122334788999999999
Q ss_pred CCCCcchhhHHH
Q 009274 149 PGCRPLLTNVWK 160 (538)
Q Consensus 149 p~~r~~~~~~~~ 160 (538)
|.+||++.++.+
T Consensus 294 P~~Rpt~~ell~ 305 (353)
T 2b9h_A 294 PAKRITAKEALE 305 (353)
T ss_dssp GGGSCCHHHHHT
T ss_pred cccCCCHHHHhc
Confidence 999999888765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-08 Score=109.83 Aligned_cols=233 Identities=12% Similarity=-0.038 Sum_probs=140.7
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCCC----cEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc---
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSGG----GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT--- 363 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--- 363 (538)
|...+..++|+|++..++++.+.+| .|++||+.++...... ... ......+|++| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~----~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKW----VKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEE----EESCCCEESTT-SEEEEEECCCC---
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCC----ceeccEEEECC-CEEEEEEecCcccc
Confidence 3346889999998776666655444 5999999877542210 000 11123478999 98888776654
Q ss_pred -----------EEEEECCCCce----eEEecCCCCCeEEEEEe--CCEEEEEecCC-----cEEEEECCCC--ceeEEEe
Q 009274 364 -----------IKAWSLLDGTL----SCTMSGHKSAVSTLAVC--NGVLYSGSRDG-----TIRLWSLSDH--SLLTVLE 419 (538)
Q Consensus 364 -----------i~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~dg-----~i~iwd~~~~--~~~~~~~ 419 (538)
|++|++.++.. +.....+...+.++.|+ +++|+..+.++ .|++||+.++ +....+.
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 89999987652 22223344468899999 44677666543 8999999877 4144454
Q ss_pred cCCCCceEEEEEEcCCCCEEEEEeCC----CcEEEEeCCc----ceeeeccccceEEEEEe-CCCEEEEEeCCCeEEEEe
Q 009274 420 EDSSGAVSSVLSLTAVQHTLVVSHES----GSIKVWRNDK----FMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~----~~~~~~~h~~~v~~~~~-~~~~l~sgs~dg~v~iwd 490 (538)
.+.... .. .++++++.|+..+.+ +.|.+||... ....+..+...+..+++ ++.++++...|+..++|.
T Consensus 314 ~~~~~~-~~--~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 314 PDLKAQ-WD--FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp CSSSSC-EE--EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred CCCCce-EE--EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 443333 22 234888888887764 4599999654 23334445556667777 666788888899877775
Q ss_pred cC-CCeeEeeeecCCcccCCCceEEEEE-eCC-EEE-EEE---CCCeEEEEEcC
Q 009274 491 LA-GDEFEEDVIPTGAIPCGSVITALLY-WQG-KLF-VGC---ADRTVKVYYYG 537 (538)
Q Consensus 491 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~-sg~---~dg~v~vw~~~ 537 (538)
+. ++........ +....+..+.+ +++ .++ +.+ ..++|++||+.
T Consensus 391 ~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 391 FDLDGKPAGAVSL----PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EETTSCEEEECBC----SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred EeCCCCceeeccC----CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 54 2322222211 11223344433 344 344 322 35789999874
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=119.04 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=64.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+++.+..... .....||+.|+|||++.... .....+++++|||||||+||+|++|+ |
T Consensus 162 ~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~----------~~~~~~~~~~Di~slG~il~~l~~g~~p 228 (318)
T 2dyl_A 162 GQIKLCDFGISGRLVDDKA---KDRSAGCAAYMAPERIDPPD----------PTKPDYDIRADVWSLGISLVELATGQFP 228 (318)
T ss_dssp SCEEECCCTTC-----------------CCTTCCHHHHC------------------CCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEEECCCchhccCCcc---ccccCCCccccChhhccccc----------ccccCCccccchhhHHHHHHHHHhCCCC
Confidence 467888 45555544322 44678999999999982111 01345778999999999999999999 9
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhh---cCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF---GSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|...... .+. .. ......... ......+.+++.+||..+|.+||++.++.+
T Consensus 229 f~~~~~~~~~~--------------------~~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 229 YKNCKTDFEVL--------------------TK-VLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp TTTCCSHHHHH--------------------HH-HHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCCCccHHHH--------------------HH-HhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 9763211 000 00 000000000 011234788999999999999999887665
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.8e-12 Score=119.27 Aligned_cols=104 Identities=20% Similarity=0.313 Sum_probs=71.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...... .....||+.|+|||++. + ....+.++|||||||++|+|++|+ |
T Consensus 177 ~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~------~--------~~~~~~~~Di~slG~il~~l~~g~~p 238 (312)
T 2iwi_A 177 GCAKLIDFGSGALLHDEP----YTDFDGTRVYSPPEWIS------R--------HQYHALPATVWSLGILLYDMVCGDIP 238 (312)
T ss_dssp TEEEECCCSSCEECCSSC----BCCCCSCTTTSCHHHHH------H--------SCBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CeEEEEEcchhhhcccCc----ccccCCcccccCceeee------c--------CCCCCccchHHHHHHHHHHHHHCCCC
Confidence 467888 5566665443 45688999999999982 1 122345899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|......... ....+ ......+.+++.+||..+|.+||++.++.+
T Consensus 239 f~~~~~~~~~------------~~~~~---------------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 239 FERDQEILEA------------ELHFP---------------AHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp CCSHHHHHHT------------CCCCC---------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCChHHHhhh------------ccCCc---------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9764322000 00000 001123678999999999999999888765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-09 Score=108.89 Aligned_cols=270 Identities=11% Similarity=0.090 Sum_probs=169.6
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcC----------e-EEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK----------V-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 260 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
..++.++.++.++.|..+|..+|+.+..+..+... + ..+++. +..++.++.|+.|..+|..+++..
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEe
Confidence 34788888888999999999999999998654321 1 112231 336678888999999999988765
Q ss_pred cceeee-cccCCceeeeEEEEeecCCEEEEee------CCCcEEEEECCCCceeEEecCCC-------------------
Q 009274 329 EPLKKW-NEEKDWRYSGIHALTTSGRYLYTGS------GDRTIKAWSLLDGTLSCTMSGHK------------------- 382 (538)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~h~------------------- 382 (538)
...... ........... -.-. +..+++++ .+|.|+.||.++|+.++.+....
T Consensus 145 W~~~~~~~~~~~~~~~~s-P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGA-PRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCTTSCCBCCSC-CEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCCCCCccccCC-cEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 444332 11000000000 0111 44555554 36899999999999998875210
Q ss_pred ------------CCeEEEEEe--CCEEEEEecCCc-------------------EEEEECCCCceeEEEecCCCC-----
Q 009274 383 ------------SAVSTLAVC--NGVLYSGSRDGT-------------------IRLWSLSDHSLLTVLEEDSSG----- 424 (538)
Q Consensus 383 ------------~~v~~l~~~--~~~l~s~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~----- 424 (538)
.....++++ .++++.++.++. |..+|.++|+.+..+...+..
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence 001246666 568888887763 999999999999888753211
Q ss_pred --ceEEEEEEcCCCC---EEEEEeCCCcEEEEeCC--cceeeecc-------c---------------------cce---
Q 009274 425 --AVSSVLSLTAVQH---TLVVSHESGSIKVWRND--KFMKSMQT-------H---------------------KGS--- 466 (538)
Q Consensus 425 --~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~--~~~~~~~~-------h---------------------~~~--- 466 (538)
..........+|+ .++.++.+|.++++|.. +.+..... + ...
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1111122333554 78899999999999943 33321110 0 000
Q ss_pred ----------EEEEEeCCCEEEEEeC---------------------------------------------CCeEEEEec
Q 009274 467 ----------VFAVFLEGKWLFTGGW---------------------------------------------DKTVSVQEL 491 (538)
Q Consensus 467 ----------v~~~~~~~~~l~sgs~---------------------------------------------dg~v~iwd~ 491 (538)
-.+++++..++++... +|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0234445566665421 478999999
Q ss_pred CCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcCC
Q 009274 492 AGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~~ 538 (538)
.+++............. ..+...++.+++|+.||.++.||..+
T Consensus 463 ~tG~~~W~~~~~~~~~~----g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 463 VKQQAAWEVPYVTIFNG----GTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp TTTEEEEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCCeEeEccCCCCccC----ccceECCCEEEEECCCCcEEEEECCC
Confidence 99998877665432111 13334578899999999999999753
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-08 Score=94.83 Aligned_cols=233 Identities=12% Similarity=0.130 Sum_probs=144.5
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC--cEEEEEccCCCCC
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG--GIFVWSFSFPLGH 328 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~ 328 (538)
.....++++ ++++++...++.|++||.++++..........+ . ++|+++++ .+++++.++ .|.+|+.......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCC-cEEEEecCCCceEEEEEcCCCcee
Confidence 467899998 666666667799999999887776665543333 3 88988666 555665544 7888887654332
Q ss_pred cceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE----ecCCCCCe--EEEEEeC--CE-EEEEe
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT----MSGHKSAV--STLAVCN--GV-LYSGS 399 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~h~~~v--~~l~~~~--~~-l~s~s 399 (538)
..+........ ......++++++..|+++..++.|+.||..++..... ..++...- ..++|++ +. +++-.
T Consensus 208 ~~~g~~~~~~~-~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFS-GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSC-SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhc-CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 22211111011 1112347788555566677789999999987764332 22222222 3899983 44 44555
Q ss_pred cCCcEEEEECCCCceeEEEecCC--C-----------CceEEEEEEcCCCCEEEEEe-CCCcEEEEe-CCcceeeeccc-
Q 009274 400 RDGTIRLWSLSDHSLLTVLEEDS--S-----------GAVSSVLSLTAVQHTLVVSH-ESGSIKVWR-NDKFMKSMQTH- 463 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd-~~~~~~~~~~h- 463 (538)
.++.|+.||.... ...+.... . -....-++++++|+++++-+ .++.|+.|+ ....+..+.++
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 6788999987643 22332221 0 01133479999999777777 789999999 44444555443
Q ss_pred --------------cceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 464 --------------KGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 464 --------------~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
-.....+++ ++.++++-..++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 123455655 6667777777788887765
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-12 Score=123.45 Aligned_cols=124 Identities=15% Similarity=0.247 Sum_probs=69.2
Q ss_pred eeeeecc--ccccccccc---hhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 12 SVAKVGC--VGSRICDKE---VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 12 ~~~~~~~--~~~~~~~~~---~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
+..|+.+ +++.+.... .........||+.|+|||++... ..+++++|||||||+||+|++|
T Consensus 158 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--------------~~~~~~~Di~slG~il~~l~~g 223 (303)
T 2vwi_A 158 GSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQV--------------RGYDFKADIWSFGITAIELATG 223 (303)
T ss_dssp CCEEECCCHHHHHCC---------------CCCTTCCHHHHHHH--------------HCCCTHHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccc--------------cCCCchhhHHHHHHHHHHHHhC
Confidence 4578884 444443221 11113457899999999998221 2367899999999999999999
Q ss_pred C-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
+ ||.............+.. ......... ...........+.+++.+||..+|.+||++.++.+
T Consensus 224 ~~pf~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 224 AAPYHKYPPMKVLMLTLQND---------PPSLETGVQ--DKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp SCTTTTSCGGGHHHHHHTSS---------CCCTTC-------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCCCccCchhhHHHHHhccC---------CCccccccc--cchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 9 998753331110000000 000000000 00001112234788999999999999999888765
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-11 Score=117.38 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=74.4
Q ss_pred eeeeec--cccccccccch-hhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
..+|+. |+++...+... ........||+.|+|||++ .+ ...++.++|||||||+||+|++|+
T Consensus 158 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~el~~g~~ 223 (320)
T 2i6l_A 158 LVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLL------LS--------PNNYTKAIDMWAAGCIFAEMLTGKT 223 (320)
T ss_dssp TEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHH------HC--------TTCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CeEEEccCccccccCCCcccccccccccccccccCcHHh------cC--------cccCCchhhhHhHHHHHHHHHhCCC
Confidence 467888 55665543211 1113457889999999998 22 245778999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHH----HHH-----------hhhcCccchHHHHHhhhhccCCCCC
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY----LLE-----------NKFGSEFVSLQLMFCQCLNFDPGCR 152 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------~~~~~~~~~l~~~~~~~l~~~p~~r 152 (538)
||.+............. ........+..... ... .........+.+++.+||+.+|.+|
T Consensus 224 pf~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R 297 (320)
T 2i6l_A 224 LFAGAHELEQMQLILES------IPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDR 297 (320)
T ss_dssp SSCCSSHHHHHHHHHHH------SCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGS
T ss_pred CCCCCCHHHHHHHHHHh------cCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCcccc
Confidence 99875433111000000 00000000000000 000 0001123348899999999999999
Q ss_pred cchhhHHH
Q 009274 153 PLLTNVWK 160 (538)
Q Consensus 153 ~~~~~~~~ 160 (538)
|++.++.+
T Consensus 298 pt~~ell~ 305 (320)
T 2i6l_A 298 LTAEEALS 305 (320)
T ss_dssp CCHHHHHT
T ss_pred CCHHHHhC
Confidence 99888765
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-11 Score=116.92 Aligned_cols=105 Identities=17% Similarity=0.096 Sum_probs=68.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++...... ...||+.|||||++ .+ ...+++++|||||||++|+|++|. |
T Consensus 171 ~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~~~~~ 230 (289)
T 1x8b_A 171 VMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVL------QE--------NYTHLPKADIFALALTVVCAAGAEPL 230 (289)
T ss_dssp CCEEECCCTTCEETTCSC------CCCCCGGGCCHHHH------TT--------CCTTHHHHHHHHHHHHHHHHTTCCCC
T ss_pred eEEEEcccccccccCCcc------ccCCCccccChhHh------cC--------CCCCCchhhHHHHHHHHHHHhcCCCC
Confidence 357888 5555554332 35699999999999 33 235668999999999999999999 4
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|...... .+.. . . .... .......+.+++.+||..+|.+||++.++.+
T Consensus 231 ~~~~~~~~~~~~-----~-~---~~~~---------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 231 PRNGDQWHEIRQ-----G-R---LPRI---------------PQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp CSSSHHHHHHHT-----T-C---CCCC---------------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CcchhHHHHHHc-----C-C---CCCC---------------CcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 4332111 1110 0 0 0000 0011224778999999999999999887654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-08 Score=94.26 Aligned_cols=193 Identities=8% Similarity=-0.002 Sum_probs=127.9
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
..+.+++++ ++.+++.. ++.|.+||....... .+. .....+.++++.+++ .++++...++.|.+|+..+....
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~- 142 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT- 142 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCE-
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeE-
Confidence 567889998 56555554 889999998765433 333 233678999998855 57777777899999975432211
Q ss_pred ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C-CEEEEEecCCcEEEE
Q 009274 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-GVLYSGSRDGTIRLW 407 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-~~l~s~s~dg~i~iw 407 (538)
... .........++++++++.+++...++.|.+||............+...+.+++++ + .++++...++.|.+|
T Consensus 143 -~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 143 -VLP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -ECC---CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -eec---cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 110 0111112245778888877777778899999987766544433444678899998 4 355555568899999
Q ss_pred ECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 009274 408 SLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (538)
Q Consensus 408 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 455 (538)
|........ ......... ..++++++|+++++...++.|++++...
T Consensus 219 ~~~~~~~~~-~~~~~~~~p-~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 219 LAGSTTSTV-LPFTGLNTP-LAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CTTCSCCEE-CCCCSCSCE-EEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred cCCCCccee-eccCCCCCc-eeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 987654332 222111223 3468999999888888999999998654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-09 Score=104.02 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=119.8
Q ss_pred cEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc-----------eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-----------HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 254 ~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
+++.++++ .+++++|+.| .+++|++++.+ ..... .+.. |+.++| ++.+++++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 57888888 8889999988 56669865332 11223 3566 999999 45566777 88999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEec
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSR 400 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 400 (538)
|+.+.........+.. . +..+.+....+++++.||.|.+||+.+++... +...|+|++|+++-++.|..
T Consensus 112 dv~sl~~~~~~~~~~~----~---v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~ 180 (388)
T 1xip_A 112 DLEELSEFRTVTSFEK----P---VFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLK 180 (388)
T ss_dssp ESSSTTCEEEEEECSS----C---EEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEET
T ss_pred EchhhhccCccceeec----c---eeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEc
Confidence 9987654333322211 1 22334444458999999999999999887653 34689999999554889999
Q ss_pred CCcEEEEECCCCce--eEEEec--------CCCCceEEEEEEcCCCCEEEEEe
Q 009274 401 DGTIRLWSLSDHSL--LTVLEE--------DSSGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 401 dg~i~iwd~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~ 443 (538)
||++++|+...++. ..++.. .+...+. .+.|.+++.++++-.
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~-sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPL-SVTILSPQDFLAVFG 232 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEE-EEEESSSSEEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEE-EEEEecCCeEEEEEc
Confidence 99999999987775 555521 1233344 468888888887643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.5e-07 Score=87.32 Aligned_cols=242 Identities=8% Similarity=0.018 Sum_probs=151.0
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCceEEEEecC-------CcCeEEEEEecCCC
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGH-------DHKVMAVVYVDEDQ 305 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~ 305 (538)
+..+.....+ .++++ +++++.+. .++.|.+||..+.+.+..+... ...-..++|+|+++
T Consensus 60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence 3444433344 78888 88888875 3678999999998888777532 12345789999877
Q ss_pred CEEEEEcC-CCcEEEEEccCCCCCcc-eeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCceeEEec---
Q 009274 306 PLCISGDS-GGGIFVWSFSFPLGHEP-LKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMS--- 379 (538)
Q Consensus 306 ~~l~s~~~-dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~--- 379 (538)
.++++... ++.|.++| .+++.... +. .. .+..+.+++ +.+++.+.||.+.++|. +++.+....
T Consensus 138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i~---~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~ 206 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-QGGSSDDQLLS---SP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA 206 (373)
T ss_pred EEEEEecCCCCeEEEEE-CCCCEEeEEcC---CC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc
Confidence 66665543 68899999 87643322 11 11 122344554 46677788999999999 887664322
Q ss_pred --CCCCCe-EEEEEe--CCEEEEEecCCcEEEEECCCCce--eEEEecCC---------CCceEEEEEEcCCCCEEEEEe
Q 009274 380 --GHKSAV-STLAVC--NGVLYSGSRDGTIRLWSLSDHSL--LTVLEEDS---------SGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 380 --~h~~~v-~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~ 443 (538)
....++ ....+. ++.++..+.++.+.+.|+.+... +..+.... ... ...+.++++++.++++.
T Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 207 MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLT 285 (373)
T ss_pred cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEe
Confidence 112222 223333 34444444788999999976532 22222110 111 12257899998888765
Q ss_pred C----------CCcEEEEeCC--cceeeecccc-ceEEEEEeCCC-EEEEEe-CCCeEEEEecCCCeeEeee
Q 009274 444 E----------SGSIKVWRND--KFMKSMQTHK-GSVFAVFLEGK-WLFTGG-WDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 444 ~----------dg~i~iwd~~--~~~~~~~~h~-~~v~~~~~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~~ 500 (538)
. ++.|.++|.. +.+..+.... ..-..+++||+ .++++. .++.|.+||+.+.+.....
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 4 3579999965 3455554322 22234455888 788877 4899999999998876553
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-09 Score=102.03 Aligned_cols=170 Identities=12% Similarity=0.043 Sum_probs=120.4
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC--------CCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEE
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL--------GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 365 (538)
+++.+++++..+ ++++|+.+ .+.+|++.... ......... .. . +..+..++++|+++ .++.|+
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp-~---V~~l~fd~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IP-D---VIFVCFHGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CT-T---EEEEEEETTEEEEE-ESSEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CC-C---eeEEEECCCEEEEE-cCCcEE
Confidence 688999988555 66777776 55669876432 011101111 11 1 33333388999998 889999
Q ss_pred EEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC
Q 009274 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (538)
Q Consensus 366 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 445 (538)
+||+++.........|...+.++.+....+++++.||.|.+||+.++.... + ... ..+++|+|+| ++.|..|
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~----~~~-Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L----AQN-VTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E----EES-EEEEEECSSE--EEEEETT
T ss_pred EEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c----cCC-ceEEEEcCCc--eEEEEcC
Confidence 999988777667777888899988885569999999999999999887653 2 122 3447999999 7889999
Q ss_pred CcEEEEeCCc-c---eeee------c---cccceEEEEEe--CCCEEEEE
Q 009274 446 GSIKVWRNDK-F---MKSM------Q---THKGSVFAVFL--EGKWLFTG 480 (538)
Q Consensus 446 g~i~iwd~~~-~---~~~~------~---~h~~~v~~~~~--~~~~l~sg 480 (538)
|++++|+... . ...+ . +|...|.++.| ++.++++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999998432 2 3344 2 37789999999 66666653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.5e-07 Score=88.11 Aligned_cols=236 Identities=9% Similarity=0.045 Sum_probs=148.7
Q ss_pred cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC--cEEEEECC
Q 009274 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR--TIKAWSLL 370 (538)
Q Consensus 293 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~i~iwd~~ 370 (538)
.....++|.+++. ++++...++.|+.||..++....... .. .... .+++++++.++++..++ .|..||..
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~----~~--~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHP----GF--KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEE----TC--CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeec----cC--CCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 3578899987554 77777788999999987543221111 11 1112 58899999888888766 79999987
Q ss_pred CCceeEEe----cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEE---ecCCCCce-EEEEEEcCC-CCEE
Q 009274 371 DGTLSCTM----SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVL---EEDSSGAV-SSVLSLTAV-QHTL 439 (538)
Q Consensus 371 ~~~~~~~~----~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~-~~~~~~~~~-~~~l 439 (538)
.+.....+ ......+.+++++ ++.|+.+..++.|+.||..++...... ........ ..-++++|+ +.++
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 66544443 2245667889998 457777888899999999877643220 11111111 113789995 5555
Q ss_pred EEEeCCCcEEEEeCCcceeeecccc---------------ceEEEEEe--CCCEEEEEe-CCCeEEEEecCCCeeEeeee
Q 009274 440 VVSHESGSIKVWRNDKFMKSMQTHK---------------GSVFAVFL--EGKWLFTGG-WDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 440 ~~~~~dg~i~iwd~~~~~~~~~~h~---------------~~v~~~~~--~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~ 501 (538)
++-..++.|+.|+.......+.++. .....+++ +|+++++-+ .++.|+.|++.++.......
T Consensus 283 v~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 5666788999998654444443332 22455555 788777777 78999999987777554433
Q ss_pred cCCcc----------cCCCceEEEEEeCCEEEEE-ECCCeEEEEEc
Q 009274 502 PTGAI----------PCGSVITALLYWQGKLFVG-CADRTVKVYYY 536 (538)
Q Consensus 502 ~~~~~----------~~~~~~~~~~~~~~~l~sg-~~dg~v~vw~~ 536 (538)
..... ....+......+++.|+++ ..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 21100 0122333344456776654 56778888765
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-11 Score=117.55 Aligned_cols=123 Identities=14% Similarity=0.108 Sum_probs=73.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccc-cCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGY-GSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~-~sDi~slG~~l~~lltg~- 87 (538)
+..|+. |+++...... .....||+.|+|||++ .+ ...++. ++|||||||++|+|++|+
T Consensus 189 ~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~------~~--------~~~~~~~~~Di~slG~il~~l~~g~~ 250 (348)
T 2pml_X 189 GRVKLSDFGESEYMVDKK----IKGSRGTYEFMPPEFF------SN--------ESSYNGAKVDIWSLGICLYVMFYNVV 250 (348)
T ss_dssp SCEEECCCTTCEECBTTE----ECSSCSCGGGCCGGGG------SS--------CCCEEHHHHHHHHHHHHHHHHHHSSC
T ss_pred CcEEEecccccccccccc----ccCCCCCcCccCchhh------cC--------CCCCCcchhhHHHHHHHHHHHHhCCC
Confidence 457888 4555554432 4568999999999998 43 114445 899999999999999999
Q ss_pred ccchhhh-hhee-ec-----cccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELI-DYIR-CV-----STKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~-~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||..... ..+. .+ ........ ....... . .. ..........+.+++.+||..+|.+||++.++.+
T Consensus 251 pf~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~--~-~~---~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 251 PFSLKISLVELFNNIRTKNIEYPLDRNH--FLYPLTN--K-KS---TCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp SSCCSSCSHHHHHHHTSCCCCCCCSSSS--STTTTCC--------------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCCCCCcHHHHHHHHhccCcCCccchhh--hhccccc--c-cc---ccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 9986533 1111 00 00000000 0000000 0 00 0000112234788999999999999999887655
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-07 Score=83.19 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=142.7
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEE-EecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT-FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (538)
+..+...+.+++++ ++.+++...++.|..||.. ++.... +......+.++++.++ +.++++...++.|..+|..
T Consensus 57 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~- 133 (300)
T 2qc5_A 57 VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD- 133 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-
T ss_pred CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-
Confidence 33445678899997 6666666667899999987 554322 2224467889999874 4576777768889999875
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CC-EEEEEecC
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NG-VLYSGSRD 401 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~-~l~s~s~d 401 (538)
+... ..............++.++++..++...++.|..+|. +++.... ...+...+.+++++ ++ +.++....
T Consensus 134 g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 134 GTIY----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp SCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CCEE----EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCC
Confidence 2211 1111111112234466778886666666789999998 5554432 23345678899998 44 44444456
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeee--ccccceEEEEEe--CCCEE
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL--EGKWL 477 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~h~~~v~~~~~--~~~~l 477 (538)
+.|..||. +++............ ...++++++|++.++...++.|..||.......+ ......+.++.. +|++.
T Consensus 209 ~~i~~~~~-~g~~~~~~~~~~~~~-~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 286 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDIPTPNAR-PHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVW 286 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCC-EEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEE
T ss_pred CEEEEEcC-CCcEEEEECCCCCCC-ceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEE
Confidence 78999998 555443322211222 3346899999877766667899999965433333 222344555655 56655
Q ss_pred EEEeCCCeEEEEecC
Q 009274 478 FTGGWDKTVSVQELA 492 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~ 492 (538)
++.. + .|..+|.+
T Consensus 287 v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 287 FALK-C-KIGKLNLN 299 (300)
T ss_dssp EECS-S-EEEEEEEC
T ss_pred EEcc-C-ceEEeCCC
Confidence 5444 4 77777653
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-11 Score=116.10 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=54.9
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcCccchhhh-hhee-eccccccCcch
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGEQFTKELI-DYIR-CVSTKASDDNI 109 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~pf~~~~~-~~~~-~~~~~~~~~~~ 109 (538)
.....||+.|||||++ .+ ...++.++|||||||++|+|++ ||..... ..+. .+. ..
T Consensus 187 ~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~--p~~~~~~~~~~~~~~~--~~---- 244 (303)
T 1zy4_A 187 LTSAIGTAMYVATEVL------DG--------TGHYNEKIDMYSLGIIFFEMIY--PFSTGMERVNILKKLR--SV---- 244 (303)
T ss_dssp -------CTTSCHHHH------TS--------CSCCCTHHHHHHHHHHHHHHHS--CCSSHHHHHHHHHHHH--ST----
T ss_pred cccCCCcccccCcccc------cC--------CCCCcchhhHHHHHHHHHHHHh--ccCCchhHHHHHHhcc--cc----
Confidence 3468899999999998 33 2457899999999999999999 4432111 1000 000 00
Q ss_pred hhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
....+ ..........+.+++.+||..+|.+||++.++.+
T Consensus 245 -~~~~~-----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 245 -SIEFP-----------PDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp -TCCCC-----------TTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -ccccC-----------ccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 00000 0000111123678999999999999999888765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=104.81 Aligned_cols=269 Identities=13% Similarity=0.048 Sum_probs=159.3
Q ss_pred EEEEEeecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 243 VKFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
..+|.+..+.....+.... ++.+..++.++.|..|| .+++....+..+...+.++...+ ++ .+..++.+ +..+|
T Consensus 10 ~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~--l~~~d 84 (330)
T 3hxj_A 10 KIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGK-DG-TIYFGSDK--VYAIN 84 (330)
T ss_dssp --CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETT-TT-EECCSSCE--EEEEC
T ss_pred eEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEec-CC-cEEEecCc--EEEEC
Confidence 3455555444444455664 67788888888999999 88887766554444455565543 23 34555544 77777
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEec
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSR 400 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~ 400 (538)
. +++....... ... ......+. +..+..++.++.|..+|.. ++.......+...+.++... ++.++.++.
T Consensus 85 ~-~g~~~~~~~~---~~~--~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~ 155 (330)
T 3hxj_A 85 P-DGTEKWRFDT---KKA--IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN 155 (330)
T ss_dssp C-CGGGGGGSCC----------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT
T ss_pred C-CCcEEEEEEC---CCC--cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC
Confidence 4 3222211111 110 11111222 5678888888999999988 77777776555666677776 667888888
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-cceeeeccccceEEEEEeCC-CEEE
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQTHKGSVFAVFLEG-KWLF 478 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~h~~~v~~~~~~~-~~l~ 478 (538)
++.|..+|.. ++....+..... . ...+...+++.+.+ ++ +.+..+|.. +...........+.++..+. ..|.
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~~-~-~~~~~~d~~g~l~v-~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTNDA-I-TSAASIGKDGTIYF-GS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIY 229 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSC-C-CSCCEECTTCCEEE-ES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEE
T ss_pred CCEEEEECCC-CCEeEEEecCCC-c-eeeeEEcCCCEEEE-Ee--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEE
Confidence 8999999998 777666654322 1 22245556666444 44 788888832 33334444444555666543 3677
Q ss_pred EEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEc
Q 009274 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 479 sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~ 536 (538)
.++.++.+..+|..+... .......... ...+...++.+++++.+|.|..++-
T Consensus 230 v~t~~~gl~~~~~~g~~~-~~~~~~~~~~----~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 230 VTSLDGHLYAINPDGTEK-WRFKTGKRIE----SSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEETTTEEEEECTTSCEE-EEEECSSCCC----SCCEECTTSCEEEECTTCEEEEECT
T ss_pred EEcCCCeEEEECCCCCEe-EEeeCCCCcc----ccceEcCCCeEEEecCCCCEEEECC
Confidence 777888888888644433 3322221111 1112223677888888887877763
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-07 Score=97.97 Aligned_cols=269 Identities=13% Similarity=0.083 Sum_probs=164.6
Q ss_pred eeEEeecCCeEEEEEeecCCCc----------E-EEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCC----cCeEE
Q 009274 233 DLVNGLSKGNVKFKDLQGHRDC----------V-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD----HKVMA 297 (538)
Q Consensus 233 ~~~~~~~~~~~~i~~l~~h~~~----------V-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~----~~v~~ 297 (538)
.++.-.......+|.+...... + ..+++.++.++.++.|+.|..+|..+|+.+..+.... ..+.+
T Consensus 77 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~ 156 (668)
T 1kv9_A 77 RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITG 156 (668)
T ss_dssp EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCS
T ss_pred eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecC
Confidence 3333333444557877543221 1 2345567888999999999999999999998887531 11111
Q ss_pred -EEEecCCCCEEEEEcC------CCcEEEEEccCCCCCcceeeecccCC--------------------------ceeee
Q 009274 298 -VVYVDEDQPLCISGDS------GGGIFVWSFSFPLGHEPLKKWNEEKD--------------------------WRYSG 344 (538)
Q Consensus 298 -l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 344 (538)
.... ++ .++.+.. +|.|..+|..+++............. .....
T Consensus 157 ~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~ 233 (668)
T 1kv9_A 157 APRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWD 233 (668)
T ss_dssp CCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCS
T ss_pred CCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCcccc
Confidence 1111 33 3344432 58999999988765544332110000 00011
Q ss_pred EEEEeecCCEEEEeeCCC-------------------cEEEEECCCCceeEEecC--CC-------CCeEE--EEEeCC-
Q 009274 345 IHALTTSGRYLYTGSGDR-------------------TIKAWSLLDGTLSCTMSG--HK-------SAVST--LAVCNG- 393 (538)
Q Consensus 345 ~~~~~~~~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~~--h~-------~~v~~--l~~~~~- 393 (538)
..++.++.+.++.++.++ .|..+|..+|+.++.++. |. .+... +.+.++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 246667778888887766 399999999999998864 22 22222 223332
Q ss_pred --EEEEEecCCcEEEEECCCCceeEEEecCCCCceE----------------------------------EEEEEcCCCC
Q 009274 394 --VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS----------------------------------SVLSLTAVQH 437 (538)
Q Consensus 394 --~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 437 (538)
.++.++.+|.++++|..+|+.+............ ..++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 6889999999999999999988554332100000 0136677666
Q ss_pred EEEEEe------------------------------------CCCcEEEEeCCc--ceeeeccccceE-EEEEeCCCEEE
Q 009274 438 TLVVSH------------------------------------ESGSIKVWRNDK--FMKSMQTHKGSV-FAVFLEGKWLF 478 (538)
Q Consensus 438 ~l~~~~------------------------------------~dg~i~iwd~~~--~~~~~~~h~~~v-~~~~~~~~~l~ 478 (538)
.+++.. .+|.|..||..+ .+.....+.... ..+...+.+++
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf 473 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF 473 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEE
Confidence 665421 237788899544 333333222211 23445788999
Q ss_pred EEeCCCeEEEEecCCCeeEeeeecCC
Q 009274 479 TGGWDKTVSVQELAGDEFEEDVIPTG 504 (538)
Q Consensus 479 sgs~dg~v~iwd~~~~~~~~~~~~~~ 504 (538)
.++.||.+++||.++++.........
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EECCcccchhhhhhcChhheEecCCC
Confidence 99999999999999999877766543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.3e-09 Score=99.87 Aligned_cols=267 Identities=12% Similarity=0.115 Sum_probs=163.4
Q ss_pred EEEEeecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 244 KFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
.+|....+...+.++... +..+..++.+ +..+|. +++.+..+..+.......... +..+..++.++.+..+|.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~ 124 (330)
T 3hxj_A 51 VKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF---EDILYVTSMDGHLYAINT 124 (330)
T ss_dssp EEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE---TTEEEEECTTSEEEEECT
T ss_pred EEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE---CCEEEEEecCCEEEEEcC
Confidence 356665555666778886 6777777666 888886 666554443333222233333 335677888899999987
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEecC
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRD 401 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~d 401 (538)
. +....... .... .........++ .++.++.++.|..+|.. ++....+......+.++... ++.+..++
T Consensus 125 ~-g~~~~~~~---~~~~--~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-- 194 (330)
T 3hxj_A 125 D-GTEKWRFK---TKKA--IYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-- 194 (330)
T ss_dssp T-SCEEEEEE---CSSC--CCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--
T ss_pred C-CCEEEEEc---CCCc--eeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--
Confidence 6 33221111 1111 11112333344 46778888999999998 88877776666677778775 66666666
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC-CcceeeeccccceEEEEEeC-CCEEEE
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSMQTHKGSVFAVFLE-GKWLFT 479 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~h~~~v~~~~~~-~~~l~s 479 (538)
+.|..+| .+++.......... .+ ..+...+++. +..++.++.+..+|. ++....+......+.++..+ +..|..
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~~-~~-~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v 270 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGYW-TV-TRPAISEDGT-IYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYF 270 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSSC-CC-SCCEECTTSC-EEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEE
T ss_pred CEEEEEC-CCCcEEEEEccCCc-ce-eceEECCCCe-EEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEE
Confidence 8899999 77777666654321 22 2245666665 556777888888884 33334443333323334443 667888
Q ss_pred EeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCEEEEEECCCeEEEEEc
Q 009274 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 480 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~v~vw~~ 536 (538)
++.+|.+..+|. +++........ ...+..+.. .++.|+.|+.+|.+++...
T Consensus 271 ~t~~ggl~~~d~-~g~~~~~~~~~-----~~~~~~~~~d~~g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTEKWNFETG-----SWIIATPVIDENGTIYFGTRNGKFYALFN 322 (330)
T ss_dssp ECTTCEEEEECT-TSCEEEEEECS-----SCCCSCCEECTTCCEEEECTTSCEEEEEC
T ss_pred ecCCCCEEEECC-CCcEEEEEEcC-----CccccceEEcCCCEEEEEcCCCeEEEEec
Confidence 888999999996 45444433321 122333344 6888999999999998764
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-11 Score=126.50 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=49.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++....... .....||+.|+|||++ .+ ..+++++|||||||++|+|++|. ||
T Consensus 162 ~vKL~DFG~a~~~~~~~~---~~~~~gt~~Y~APE~l------~~---------~~~s~ksDIwSLGviLyeLltG~~Pf 223 (676)
T 3qa8_A 162 IHKIIDLGYAKELDQGEL---CTEFVGTLQYLAPELL------EQ---------KKYTVTVDYWSFGTLAFECITGFRPF 223 (676)
T ss_dssp EEEECSCCCCCBTTSCCC---CCCCCSCCTTCSSCSS------CC---------SCCSTTHHHHHHHHHHHHHHSSCSSC
T ss_pred eEEEcccccccccccccc---cccccCCcccCChHHh------cc---------CCCCchhHHHHHHHHHHHHHHCCCCC
Confidence 47888 56666654432 4568999999999998 44 67889999999999999999999 99
Q ss_pred chh
Q 009274 90 TKE 92 (538)
Q Consensus 90 ~~~ 92 (538)
.+.
T Consensus 224 ~~~ 226 (676)
T 3qa8_A 224 LPN 226 (676)
T ss_dssp CSS
T ss_pred Ccc
Confidence 753
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-07 Score=88.20 Aligned_cols=250 Identities=14% Similarity=0.081 Sum_probs=156.7
Q ss_pred eEEEEEeecCCCcEEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCceEEEEecCC-------cCeEEEEEec
Q 009274 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGHD-------HKVMAVVYVD 302 (538)
Q Consensus 242 ~~~i~~l~~h~~~V~~l~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~~ 302 (538)
...+..+..-..+ . ++++ +++++.++ .++.|.+||..+++.+.++.... ..-..++++|
T Consensus 69 ~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 69 GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 3344555544455 3 8888 77777765 36789999999999998886422 2345789999
Q ss_pred CCCCEEEEEc-CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC-CceeEEecC
Q 009274 303 EDQPLCISGD-SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-GTLSCTMSG 380 (538)
Q Consensus 303 ~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~ 380 (538)
++..++++.. .++.|.++|+.+.+....+.... ....+....+.+++.+.||.+.+.++.+ ++.......
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~ 218 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 218 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc
Confidence 8876666654 37899999998765444432210 0112233455777888899999999876 554332211
Q ss_pred C----CCCeE-EEEEe--CCEEEEEecCCcEEEEECCCCc--eeEEEec---------CCCCceEEEEEEcCCCCEEEEE
Q 009274 381 H----KSAVS-TLAVC--NGVLYSGSRDGTIRLWSLSDHS--LLTVLEE---------DSSGAVSSVLSLTAVQHTLVVS 442 (538)
Q Consensus 381 h----~~~v~-~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~ 442 (538)
+ ..++. ...|. ++.++..+.+|.+++.|+.+.. ....+.. -..+... .+.++++++.+++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q-~~a~~~~~~~lyV~ 297 (386)
T 3sjl_D 219 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ-QVAYHRALDRIYLL 297 (386)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS-CEEEETTTTEEEEE
T ss_pred eeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc-eeeECCCCCeEEEE
Confidence 1 12222 24554 5555557778999999997664 2332220 0011111 15778999888886
Q ss_pred eC----------CCcEEEEeCC--cceeeeccccceEEEE--EeCCC-EEEEEe-CCCeEEEEecCCCeeEeeeecC
Q 009274 443 HE----------SGSIKVWRND--KFMKSMQTHKGSVFAV--FLEGK-WLFTGG-WDKTVSVQELAGDEFEEDVIPT 503 (538)
Q Consensus 443 ~~----------dg~i~iwd~~--~~~~~~~~h~~~v~~~--~~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~~~~~ 503 (538)
.. .+.|.++|.. +.+..+..- ..+.++ ++|++ +|++.. .++.|.++|..+++........
T Consensus 298 ~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 298 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred eccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 53 2568888954 455555432 234444 45876 666654 5899999999999877665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-10 Score=123.78 Aligned_cols=101 Identities=17% Similarity=0.099 Sum_probs=69.0
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++.+... ...+||+.|||||++ .+ .++.++|||||||+||+|++|. ||
T Consensus 219 ~~kl~DFG~a~~~~~~------~~~~gt~~y~aPE~~------~~----------~~~~~sDi~slG~~l~~l~~g~~~~ 276 (681)
T 2pzi_A 219 QLKLIDLGAVSRINSF------GYLYGTPGFQAPEIV------RT----------GPTVATDIYTVGRTLAALTLDLPTR 276 (681)
T ss_dssp CEEECCCTTCEETTCC------SCCCCCTTTSCTTHH------HH----------CSCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred cEEEEecccchhcccC------CccCCCccccCHHHH------cC----------CCCCceehhhhHHHHHHHHhCCCCC
Confidence 56888 566665543 357899999999998 22 2368999999999999999999 88
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh-hHHHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT-NVWKCI 162 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~-~~~~~l 162 (538)
.+..... ...... ..... ..+.+++.+||..+|.+||+.. ++...+
T Consensus 277 ~~~~~~~--------------~~~~~~-----~~~~~--------~~l~~li~~~l~~dP~~R~~~~~~l~~~l 323 (681)
T 2pzi_A 277 NGRYVDG--------------LPEDDP-----VLKTY--------DSYGRLLRRAIDPDPRQRFTTAEEMSAQL 323 (681)
T ss_dssp TTEECSS--------------CCTTCH-----HHHHC--------HHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred ccccccc--------------cccccc-----ccccC--------HHHHHHHhhhccCChhhCCCHHHHHHHHH
Confidence 7643220 000000 01111 1377899999999999999854 343333
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-07 Score=99.35 Aligned_cols=269 Identities=13% Similarity=0.077 Sum_probs=167.1
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcC----------e-EEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK----------V-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 260 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
..++.++.++.++.|..+|..+|+.+..+...... + ..+++. +..++.++.|+.|..+|..+++..
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEe
Confidence 34788888888999999999999999988643221 0 122332 235677888999999999988765
Q ss_pred cceeeecccCCceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCCC---C----------------
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHK---S---------------- 383 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~---~---------------- 383 (538)
.................-. ..+..+++++. +|.|+.+|..+|+.++.+.... .
T Consensus 141 W~~~~~~~~~~~~~~~~P~--v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPR--VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCE--EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCE--EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 4443321111100000001 12445666543 5899999999999998875211 0
Q ss_pred ------------CeEEEEEe--CCEEEEEecCC-------------------cEEEEECCCCceeEEEecCCCC------
Q 009274 384 ------------AVSTLAVC--NGVLYSGSRDG-------------------TIRLWSLSDHSLLTVLEEDSSG------ 424 (538)
Q Consensus 384 ------------~v~~l~~~--~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~------ 424 (538)
....++++ .+.++.++.++ .|..+|.++|+.+..+...+..
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 01235665 56888887766 3999999999999888753211
Q ss_pred -ceEEEEEEcCCCC---EEEEEeCCCcEEEEeC--Ccceeeecccc------------ceE-------------------
Q 009274 425 -AVSSVLSLTAVQH---TLVVSHESGSIKVWRN--DKFMKSMQTHK------------GSV------------------- 467 (538)
Q Consensus 425 -~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~--~~~~~~~~~h~------------~~v------------------- 467 (538)
.......+..+|+ .++.++.+|.++++|. ++.+....... .++
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 1111123334665 6888999999999994 34432211110 000
Q ss_pred -------EEEEeCCCEEEEE------------------------------------eCCCeEEEEecCCCeeEeeeecCC
Q 009274 468 -------FAVFLEGKWLFTG------------------------------------GWDKTVSVQELAGDEFEEDVIPTG 504 (538)
Q Consensus 468 -------~~~~~~~~~l~sg------------------------------------s~dg~v~iwd~~~~~~~~~~~~~~ 504 (538)
.+++++...++.. ..+|.|..||+.+++.........
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 2333333444331 134889999999999877665432
Q ss_pred cccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 505 AIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 505 ~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.. .-..+...++.+++|+.||.|+.||..
T Consensus 459 ~~----~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 459 HW----NGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp SC----CCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CC----cCceeEeCCCEEEEECCcccchhhhhh
Confidence 21 112334458889999999999999864
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-10 Score=112.94 Aligned_cols=182 Identities=12% Similarity=0.040 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-
Q 009274 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS- 383 (538)
Q Consensus 305 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~- 383 (538)
+..+++++.||.|+.||..+++....... ... . ...+..++..+++++.||.|+.||..+++.+..+..+..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~---~---s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPV---L---QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCS---C---CCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCc---e---ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 45778899999999999998876544433 110 1 112334566788888999999999999988777654321
Q ss_pred Ce-EEEEE-eCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceee
Q 009274 384 AV-STLAV-CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKS 459 (538)
Q Consensus 384 ~v-~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~ 459 (538)
.+ .+..+ .++.+++++.|+.++.||.++|+.+..+..+.. ..++|++..+++++.|+.|+.||.. +.+..
T Consensus 82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 82 LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp HHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------ccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 11 11122 366888899999999999999998877765421 2445688899999999999999954 33333
Q ss_pred eccccceEEEEEeCC-----CEEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 460 MQTHKGSVFAVFLEG-----KWLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 460 ~~~h~~~v~~~~~~~-----~~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
+..+. ......++ ..+++++.||.++.||..+++..+...
T Consensus 156 ~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 156 ATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred Eeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 33221 11222232 567888999999999999998877655
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-07 Score=101.44 Aligned_cols=242 Identities=13% Similarity=0.084 Sum_probs=144.8
Q ss_pred cCCCcEEEEEEc--CCEEEE-----EeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCC--------
Q 009274 250 GHRDCVTGLAVG--GGFLFS-----SSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG-------- 314 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------- 314 (538)
+|...+..++|+ |++|+- |+.+.+|++||+++++.+... .+......++|+ +++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 466678888998 787774 333357999999999865431 111113567899 776555444332
Q ss_pred ----CcEEEEEccCCCCCcceeeecccC-CceeeeEEEEeecCCEEEEeeC----CCcEEEEECCCCc-eeEEecCCCCC
Q 009274 315 ----GGIFVWSFSFPLGHEPLKKWNEEK-DWRYSGIHALTTSGRYLYTGSG----DRTIKAWSLLDGT-LSCTMSGHKSA 384 (538)
Q Consensus 315 ----g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~----dg~i~iwd~~~~~-~~~~~~~h~~~ 384 (538)
..|++|++.++....... +.... .........+++||++|+.... +..|+++|+.++. ....+..+...
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLV-FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEE-ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred cCCCcEEEEEECCCCcccceEE-EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 249999988764322221 11111 0111223478999997754432 3589999998764 34555556665
Q ss_pred eEEEEEe-CCEE-EEEecC---CcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEeCCC---cEEEEeCC
Q 009274 385 VSTLAVC-NGVL-YSGSRD---GTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG---SIKVWRND 454 (538)
Q Consensus 385 v~~l~~~-~~~l-~s~s~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~ 454 (538)
....... ++.| +....+ +.|..+|+.++.. ...+..+.... . .++++++.|+....++ .|++||..
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~---~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV-L---TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-E---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE-E---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 5554333 5544 444443 6799999988754 34454443332 2 7888888887766544 68888864
Q ss_pred c-ceeeecc-ccceEEEEEe--CCCEEEEEeCC----CeEEEEecCCCeeEe
Q 009274 455 K-FMKSMQT-HKGSVFAVFL--EGKWLFTGGWD----KTVSVQELAGDEFEE 498 (538)
Q Consensus 455 ~-~~~~~~~-h~~~v~~~~~--~~~~l~sgs~d----g~v~iwd~~~~~~~~ 498 (538)
. ....+.. ..+.+..+++ +++.++....+ +.++.||+.+++...
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 3 3334432 3345555554 56655544444 889999998776443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-07 Score=87.72 Aligned_cols=231 Identities=13% Similarity=0.074 Sum_probs=141.3
Q ss_pred EEeecCCCcEEEEEEc--CC-EEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 246 KDLQGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
..+..+.....+..|+ ++ ++++...++.|..|+. +++ ...+..+...+..+++.+++ +++++...++.|..|+.
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECC
Confidence 3444555667788887 66 6777778899999998 444 45566677789999998865 46666666688999987
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEE----eeC-------------CCcEEEEECCCCceeEEecCCCCCe
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT----GSG-------------DRTIKAWSLLDGTLSCTMSGHKSAV 385 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----g~~-------------dg~i~iwd~~~~~~~~~~~~h~~~v 385 (538)
. +.. ..+.............-..+.++|++.++ |.. .+.|+.||..+++..... .....
T Consensus 115 ~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 115 D-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp T-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred C-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 5 221 11111111100011123577888887776 432 356888888777654433 33456
Q ss_pred EEEEEe--CCEEEEEecC------CcEEEEECCCCcee--EEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 009274 386 STLAVC--NGVLYSGSRD------GTIRLWSLSDHSLL--TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND- 454 (538)
Q Consensus 386 ~~l~~~--~~~l~s~s~d------g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~- 454 (538)
+.++|+ ++.|+.+... +.|.+||+..+... ..+.....+... .+++.++|++. +++.+ .|.+|+..
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd-gi~~d~~G~lw-v~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD-GFCVDRGGWLW-SSSGT-GVCVFDSDG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC-SEEECTTSCEE-ECCSS-EEEEECTTS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC-eEEECCCCCEE-EecCC-cEEEECCCC
Confidence 789998 3467766655 78999998765411 111111111112 26889999944 44444 49999954
Q ss_pred cceeeeccccceEEEEEe--CCCEEEEEeCCCeEE
Q 009274 455 KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVS 487 (538)
Q Consensus 455 ~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~ 487 (538)
+.+..+..+. .+.++.+ +++.|+.++.++..+
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 4455555444 3566666 777888877764433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-06 Score=83.07 Aligned_cols=224 Identities=9% Similarity=0.082 Sum_probs=136.5
Q ss_pred cCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 009274 250 GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 250 ~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
.+..--.+..|+ +..+++...++.|..||..+++. ..+. ....+.++++.+++. ++++. ++.|.+||..++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCc
Confidence 344455678887 45666777789999999988765 3333 457799999998766 54443 5789999987543
Q ss_pred CCcceeeecccCCceeeeEEEEeecCCEEEEeeC-----------CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC
Q 009274 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-----------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG 393 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 393 (538)
.. .+.............-..++++|++.++... .+.|+.+|.. ++.. .+..+....+.++|+ ++
T Consensus 85 ~~-~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 85 AV-VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EE-EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSC
T ss_pred EE-EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCC
Confidence 22 1111111111122233567888885554422 2344444432 3332 233334456889998 34
Q ss_pred EE-EEEecCCcEEEEEC--CCCcee--EEEec-CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccceeeeccccc
Q 009274 394 VL-YSGSRDGTIRLWSL--SDHSLL--TVLEE-DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKG 465 (538)
Q Consensus 394 ~l-~s~s~dg~i~iwd~--~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~~ 465 (538)
.+ ++.+.++.|..||+ .++... ..+.. ........-++++++|++.++...++.|..||. ++.+..+..+..
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~ 241 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD 241 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence 44 55566889999997 455432 11211 111122334789999998888888889999995 467777777777
Q ss_pred eEEEEEe---CCCEEEEEe
Q 009274 466 SVFAVFL---EGKWLFTGG 481 (538)
Q Consensus 466 ~v~~~~~---~~~~l~sgs 481 (538)
.+++++| +++.|+.++
T Consensus 242 ~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp BEEEEEEESGGGCEEEEEE
T ss_pred CceEEEEeCCCCCEEEEEc
Confidence 7888887 445554443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-06 Score=89.49 Aligned_cols=263 Identities=16% Similarity=0.121 Sum_probs=157.8
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCc----CeE-EEEEecCCCCEEEEEcC------CCcEEEEEccCCC
Q 009274 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----KVM-AVVYVDEDQPLCISGDS------GGGIFVWSFSFPL 326 (538)
Q Consensus 258 l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~ 326 (538)
+++.++.++.++.|+.+..+|..+|+.+........ .+. +.... ++ .++.++. ++.|..+|..+++
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 455688899999999999999999999988764321 121 11111 33 3444443 7899999998876
Q ss_pred CCcceeeecccC---------------------------------CceeeeEEEEeecCCEEEEeeCC------------
Q 009274 327 GHEPLKKWNEEK---------------------------------DWRYSGIHALTTSGRYLYTGSGD------------ 361 (538)
Q Consensus 327 ~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~l~sg~~d------------ 361 (538)
............ ........++.++...++.++.+
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 543332211100 00000112455555666666532
Q ss_pred ----CcEEEEECCCCceeEEecCC--C--------CCeE-EEEEeC---CEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 009274 362 ----RTIKAWSLLDGTLSCTMSGH--K--------SAVS-TLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423 (538)
Q Consensus 362 ----g~i~iwd~~~~~~~~~~~~h--~--------~~v~-~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 423 (538)
+.|..+|..+|+.+..++.. . .++. .....+ ..++.++.+|.++++|..+++.+........
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 36999999999999887532 1 2221 111113 2577888999999999999998877654320
Q ss_pred -----------CceE--------------------------EEEEEcCCCCEEEEEe-----------------------
Q 009274 424 -----------GAVS--------------------------SVLSLTAVQHTLVVSH----------------------- 443 (538)
Q Consensus 424 -----------~~~~--------------------------~~~~~~~~~~~l~~~~----------------------- 443 (538)
+... ..++++|+..++++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 0000 1136777777777654
Q ss_pred --------------CCCcEEEEeCC--cceeeeccccceEE--EEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCc
Q 009274 444 --------------ESGSIKVWRND--KFMKSMQTHKGSVF--AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGA 505 (538)
Q Consensus 444 --------------~dg~i~iwd~~--~~~~~~~~h~~~v~--~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 505 (538)
.+|.|..||.. +.+.++... ..+. .+...+..++.++.||.++.||.++++..........
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 34678888854 333333221 1111 1233677888899999999999999998877765443
Q ss_pred ccCCCceEEEEEeCCEEEEEEC
Q 009274 506 IPCGSVITALLYWQGKLFVGCA 527 (538)
Q Consensus 506 ~~~~~~~~~~~~~~~~l~sg~~ 527 (538)
.... .+ ....+++++.+..
T Consensus 507 ~~~~-p~--~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 507 GIGS-PM--TYSFKGKQYIGSM 525 (571)
T ss_dssp CCSC-CE--EEEETTEEEEEEE
T ss_pred cEee-eE--EEEECCEEEEEEE
Confidence 2222 22 2235777555433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-06 Score=89.00 Aligned_cols=267 Identities=13% Similarity=0.060 Sum_probs=162.9
Q ss_pred EcCCEEEEEeC-CCcEEEEeC-CCCceEEEEecCCcC----------e-EEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 009274 260 VGGGFLFSSSF-DKSIHVWSL-KDFSHVHTFKGHDHK----------V-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 260 ~~~~~l~s~s~-dg~i~iwd~-~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
..++.++.++. ++.|..+|. .+|+.+..+...... + ..++.. +..++.++.|+.+..+|..+++
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCC
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCC
Confidence 34777777777 899999999 999999887643210 0 122332 3356777889999999998876
Q ss_pred CCcceeeecccC--CceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCC--------------
Q 009274 327 GHEPLKKWNEEK--DWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSA-------------- 384 (538)
Q Consensus 327 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~-------------- 384 (538)
............ ......+ + .+..+++++. ++.|+.+|..+|+.++++......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~--v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPF--V--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCE--E--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEEecCCCCCccceeccCCE--E--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 554333211100 0011111 1 2455666655 799999999999999877532111
Q ss_pred -----------------------e-EEEEEe--CCEEEEEecC----------------CcEEEEECCCCceeEEEecCC
Q 009274 385 -----------------------V-STLAVC--NGVLYSGSRD----------------GTIRLWSLSDHSLLTVLEEDS 422 (538)
Q Consensus 385 -----------------------v-~~l~~~--~~~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~~ 422 (538)
+ ..++++ .+.++.+..+ +.|..+|.++++.+..++...
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 0 124555 4566666532 359999999999988886432
Q ss_pred C------C-ceEEEEEEcCCCC---EEEEEeCCCcEEEEeCC--cceeeecccc-------------ceE----------
Q 009274 423 S------G-AVSSVLSLTAVQH---TLVVSHESGSIKVWRND--KFMKSMQTHK-------------GSV---------- 467 (538)
Q Consensus 423 ~------~-~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~--~~~~~~~~h~-------------~~v---------- 467 (538)
. . ..........+|+ .++.++.+|.++++|.. +.+....... .++
T Consensus 293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCC
Confidence 1 0 0111123334673 57788899999999943 3333322110 111
Q ss_pred ------------------EEEEeCCCEEEEEe-------------------------------------CCCeEEEEecC
Q 009274 468 ------------------FAVFLEGKWLFTGG-------------------------------------WDKTVSVQELA 492 (538)
Q Consensus 468 ------------------~~~~~~~~~l~sgs-------------------------------------~dg~v~iwd~~ 492 (538)
.+++++..+++..+ .+|.|..||+.
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 12334445555443 35789999999
Q ss_pred CCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 493 GDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
+++............. ..+...++.+++++.||.|+.||..
T Consensus 453 tG~~~W~~~~~~~~~~----~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 453 TGKAKWTKWEKFAAWG----GTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp TCCEEEEEEESSCCCS----BCEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCEEEEecCCCCccc----eeEEECCCEEEEEcCCCeEEEEECC
Confidence 9988777654332111 1123347888889999999999864
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.87 E-value=3.7e-06 Score=79.23 Aligned_cols=201 Identities=13% Similarity=0.085 Sum_probs=122.7
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
..+..--.+..|+++++.++++...++.|+.||..++.. ..+... ......++++++++++ +. ++.|.+||
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~~~~---~~~~~i~~~~dG~l~v-~~-~~~l~~~d 79 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRVTMD---APVSSVALRQSGGYVA-TI-GTKFCALN 79 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEEECS---SCEEEEEEBTTSSEEE-EE-TTEEEEEE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEEeCC---CceEEEEECCCCCEEE-EE-CCeEEEEE
Confidence 344455678899998888888888899999999876532 111111 1123457788888544 44 56799999
Q ss_pred CCCCceeEEecC----CCCCeEEEEEe-CCEEEEEe-cC---------CcEEEEECCC-CceeEEEecCCCCceEEEEEE
Q 009274 369 LLDGTLSCTMSG----HKSAVSTLAVC-NGVLYSGS-RD---------GTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSL 432 (538)
Q Consensus 369 ~~~~~~~~~~~~----h~~~v~~l~~~-~~~l~s~s-~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 432 (538)
..+++....... ....+++++++ ++.++.++ .+ ..-.+|.+.. ++....... .. ...-+++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~-~pngi~~ 156 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--VD-ISNGLDW 156 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--ES-BEEEEEE
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--cc-cccceEE
Confidence 988765433221 12357888888 34344333 21 2334555443 333222221 11 2334799
Q ss_pred cCCCCEEEE-EeCCCcEEEEeCC--c--c-----eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeee
Q 009274 433 TAVQHTLVV-SHESGSIKVWRND--K--F-----MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 433 ~~~~~~l~~-~~~dg~i~iwd~~--~--~-----~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 500 (538)
+|+++.++. .+.++.|..||.. . . ...+..+......+.+ +|++.++...++.|..||..+++.....
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 999987755 4557889999852 1 1 1222233345566665 7887777777889999999877765544
Q ss_pred e
Q 009274 501 I 501 (538)
Q Consensus 501 ~ 501 (538)
.
T Consensus 237 ~ 237 (297)
T 3g4e_A 237 K 237 (297)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-06 Score=88.62 Aligned_cols=270 Identities=14% Similarity=0.063 Sum_probs=160.3
Q ss_pred eEEeecCCeEEEEEeecCCCc---------EEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCc----CeE-EEE
Q 009274 234 LVNGLSKGNVKFKDLQGHRDC---------VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----KVM-AVV 299 (538)
Q Consensus 234 ~~~~~~~~~~~i~~l~~h~~~---------V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~ 299 (538)
++.-.......+|.+...... -..+++.++.++.++.|+.|..+|..+|+.+...+.... .+. ...
T Consensus 80 v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~ 159 (582)
T 1flg_A 80 LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT 159 (582)
T ss_dssp EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE
T ss_pred EEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE
Confidence 333333344456777654321 123455688899999999999999999999988764331 111 111
Q ss_pred EecC---CCCEEEEEc------CCCcEEEEEccCCCCCcceeeeccc-----------------C---------------
Q 009274 300 YVDE---DQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEE-----------------K--------------- 338 (538)
Q Consensus 300 ~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~-----------------~--------------- 338 (538)
...+ +...++.++ .+|.|+-+|..+++........... .
T Consensus 160 v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~ 239 (582)
T 1flg_A 160 IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVES 239 (582)
T ss_dssp EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGG
T ss_pred EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccc
Confidence 1121 111455554 3788999998877644322110000 0
Q ss_pred ----CceeeeEEEEeecCCEEEEeeC--------------------C----CcEEEEECCCCceeEEecC--CC------
Q 009274 339 ----DWRYSGIHALTTSGRYLYTGSG--------------------D----RTIKAWSLLDGTLSCTMSG--HK------ 382 (538)
Q Consensus 339 ----~~~~~~~~~~~~~~~~l~sg~~--------------------d----g~i~iwd~~~~~~~~~~~~--h~------ 382 (538)
....-...++.+..+.++.++. | +.|..+|..+|+.+..++. |.
T Consensus 240 ~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~ 319 (582)
T 1flg_A 240 WSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSG 319 (582)
T ss_dssp GGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccC
Confidence 0000012355666677776653 2 6899999999999998753 32
Q ss_pred --CCeEEEEE---eC---CEEEEEecCCcEEEEECCCCceeEEEecCCCC-----------ce-----------------
Q 009274 383 --SAVSTLAV---CN---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG-----------AV----------------- 426 (538)
Q Consensus 383 --~~v~~l~~---~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~----------------- 426 (538)
.++. +.. .+ ..++.++.+|.++++|.++|+.+..+...... ..
T Consensus 320 ~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~ 398 (582)
T 1flg_A 320 NNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKH 398 (582)
T ss_dssp CCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSS
T ss_pred CCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccC
Confidence 1222 122 13 37888999999999999999988776543200 00
Q ss_pred ---E------------EEEEEcCCCCEEEEEe---------------------------------CCCcEEEEeCC--cc
Q 009274 427 ---S------------SVLSLTAVQHTLVVSH---------------------------------ESGSIKVWRND--KF 456 (538)
Q Consensus 427 ---~------------~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~--~~ 456 (538)
. ..++++|+..++++.. .+|.|..||.. +.
T Consensus 399 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~ 478 (582)
T 1flg_A 399 GKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV 478 (582)
T ss_dssp CCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCE
T ss_pred CCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCE
Confidence 0 0124555555555433 25778888854 33
Q ss_pred eeeeccccceEE--EEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCc
Q 009274 457 MKSMQTHKGSVF--AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGA 505 (538)
Q Consensus 457 ~~~~~~h~~~v~--~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 505 (538)
+.+..... ++. .+...+.+++.|+.||.++.||.++++..........
T Consensus 479 ~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 479 VWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred EEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 33332221 111 2234677888899999999999999998887766443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.4e-07 Score=93.99 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=122.4
Q ss_pred CCcCeEEEEEecCCCCEEEEEcCC----CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc---
Q 009274 291 HDHKVMAVVYVDEDQPLCISGDSG----GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT--- 363 (538)
Q Consensus 291 h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--- 363 (538)
|...+..++|+|++..++++.+.. ..|++||+.+++.... .... ......+|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD----VKFSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE----EESCCCEEE-TTTEEEEEESSCCC--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC----ceeccEEEe-CCCEEEEEEecCcccc
Confidence 555788899999887776655443 4799999998753221 1110 111234788 9998888887743
Q ss_pred ----------EEEEECCCCce----eEEecC-CCCCeEEEEEe--CCEEE-EEec---CCcEEEEECCCCc-eeEEEecC
Q 009274 364 ----------IKAWSLLDGTL----SCTMSG-HKSAVSTLAVC--NGVLY-SGSR---DGTIRLWSLSDHS-LLTVLEED 421 (538)
Q Consensus 364 ----------i~iwd~~~~~~----~~~~~~-h~~~v~~l~~~--~~~l~-s~s~---dg~i~iwd~~~~~-~~~~~~~~ 421 (538)
|++|++.++.. +..... |...+.++.|+ +++|+ +.+. ++.|+++|+.++. ....+..+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 99999987653 333333 45567888898 44554 3332 3589999998764 34445444
Q ss_pred CCCceEEEEEEcCCCCEEEEEeC-C---CcEEEEeCCcc----eeeeccccceEEEEEeCCCEEEEEeCC-C--eEEEEe
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHE-S---GSIKVWRNDKF----MKSMQTHKGSVFAVFLEGKWLFTGGWD-K--TVSVQE 490 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~----~~~~~~h~~~v~~~~~~~~~l~sgs~d-g--~v~iwd 490 (538)
... ... .+++++..|+..+. + +.|..+|.... .+.+..|...+..++++++.|+....+ + .|++||
T Consensus 280 ~~~-~~~--~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 280 LDA-DVS--LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp SSS-CEE--EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CCc-eEE--EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEE
Confidence 332 222 25566665554443 3 57888886542 245555554444777888877766654 4 689999
Q ss_pred cCCCee
Q 009274 491 LAGDEF 496 (538)
Q Consensus 491 ~~~~~~ 496 (538)
+.++..
T Consensus 357 ~~g~~~ 362 (693)
T 3iuj_A 357 YEGKRV 362 (693)
T ss_dssp TTSCEE
T ss_pred CCCCee
Confidence 987654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-07 Score=90.50 Aligned_cols=247 Identities=9% Similarity=-0.078 Sum_probs=153.9
Q ss_pred cEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEc---------CCCcEEEEEccCCCCCcceeeecccC--Cce
Q 009274 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEK--DWR 341 (538)
Q Consensus 273 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~ 341 (538)
+|.++|..+++.+.++.....+ .+.++|++..++++.+ .++.|.+||..+.+....+....... ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999876666 7999998888777653 47899999999877655554320000 000
Q ss_pred eeeEEEEeecCCEEEEeeC--CCcEEE--EECCCCceeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCC-----
Q 009274 342 YSGIHALTTSGRYLYTGSG--DRTIKA--WSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSD----- 411 (538)
Q Consensus 342 ~~~~~~~~~~~~~l~sg~~--dg~i~i--wd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~----- 411 (538)
......++|||++++++.. +..+.+ +|..+ +.++..... ..+... ...+++.+.|+.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 1124589999998888874 467888 99877 444432111 112223 44666777899999999886
Q ss_pred CceeEE----EecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc----ceeeecc------------ccceEEEEE
Q 009274 412 HSLLTV----LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK----FMKSMQT------------HKGSVFAVF 471 (538)
Q Consensus 412 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~------------h~~~v~~~~ 471 (538)
++.... +... ... . . .+++..++..+. +.+.+.|... ....+.. +......++
T Consensus 200 ~~v~~~~t~~i~vg-~~P-~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCS-SQA-A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBC-SCC-E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred CeEEEEeeeeeeCC-CCc-c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 333211 1111 111 1 3 555666655556 8999999642 1222211 111124577
Q ss_pred eCCCEEEEEeC---------CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE--EEEEE-CCCeEEEEEcCC
Q 009274 472 LEGKWLFTGGW---------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGC-ADRTVKVYYYGK 538 (538)
Q Consensus 472 ~~~~~l~sgs~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~sg~-~dg~v~vw~~~~ 538 (538)
++++.++.+.. ++.+.++|+.+.+......... ......+.+|++ +++.. .++.|.++|..+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-----DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-----CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 78888776543 2356699999988665443221 133444555664 55566 599999999753
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.86 E-value=7.6e-07 Score=84.49 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=121.1
Q ss_pred CCCcEEEEEEc-C-CEEEEEeCCCcEEEEeCCCCceEEE-Eec----CCcCeEEEEEecCCCCEEEEEcCC---------
Q 009274 251 HRDCVTGLAVG-G-GFLFSSSFDKSIHVWSLKDFSHVHT-FKG----HDHKVMAVVYVDEDQPLCISGDSG--------- 314 (538)
Q Consensus 251 h~~~V~~l~~~-~-~~l~s~s~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~~l~s~~~d--------- 314 (538)
+...+.+++++ . ..++.++.++.|.+||.+ ++.... ... +...+.++++.+++ .++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccc
Confidence 44678899998 4 676666666689999988 665432 221 12357899998865 465655544
Q ss_pred ------CcEEEEEccCCCCCcceeeecccCCceeeeEEEEe----ecCCEEEEe-eCCCcEEEEECC-CCc-----eeEE
Q 009274 315 ------GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT----TSGRYLYTG-SGDRTIKAWSLL-DGT-----LSCT 377 (538)
Q Consensus 315 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~sg-~~dg~i~iwd~~-~~~-----~~~~ 377 (538)
+.|..||.. +. ........ ......+++ ++++.++.+ ..++.|.+||.. +++ ....
T Consensus 147 ~~~~~~~~l~~~~~~-g~----~~~~~~~~--~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~ 219 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQ----MIQVDTAF--QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH 219 (314)
T ss_dssp TTSSSCEEEEEECTT-SC----EEEEEEEE--SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred cccCCCCeEEEECCC-CC----EEEeccCC--CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence 456555543 21 11111111 111234677 888655544 567899999986 443 2233
Q ss_pred ecCCC-CCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeC
Q 009274 378 MSGHK-SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRN 453 (538)
Q Consensus 378 ~~~h~-~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~ 453 (538)
+..+. .....++++ ++++++...++.|.+||..+++....+..+. .... .++++++++.|+++ ..++.|..|+.
T Consensus 220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~-~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF-EKPS-NLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS-SCEE-EEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-CCce-eEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 34444 567889998 4456666678899999998787776665442 2333 36889999955544 45688999986
Q ss_pred C
Q 009274 454 D 454 (538)
Q Consensus 454 ~ 454 (538)
.
T Consensus 298 ~ 298 (314)
T 1pjx_A 298 Q 298 (314)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-06 Score=88.04 Aligned_cols=271 Identities=10% Similarity=0.022 Sum_probs=163.7
Q ss_pred cCCEEEEEeC-CCcEEEEeC-CCCceEEEEecCCcC-----------eEEEEEecCCCC---EEEEEcCCCcEEEEEccC
Q 009274 261 GGGFLFSSSF-DKSIHVWSL-KDFSHVHTFKGHDHK-----------VMAVVYVDEDQP---LCISGDSGGGIFVWSFSF 324 (538)
Q Consensus 261 ~~~~l~s~s~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~---~l~s~~~dg~i~vwd~~~ 324 (538)
.++.++.++. ++.|.-+|. .+|+.+..+...... ...+++.|.++. .++.++.|+.+.-+|..+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 4777888887 899999999 999999988643321 123455433333 357788899999999988
Q ss_pred CCCCcceeeecccCCceeeeEEEEeecCCEEEEee------CCCcEEEEECCCCceeEEecCCCCC--------------
Q 009274 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS------GDRTIKAWSLLDGTLSCTMSGHKSA-------------- 384 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~h~~~-------------- 384 (538)
++...................-.+ .+..+++++ .+|.|+.+|.++|+.++.+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 765543322111000000000011 244566665 3899999999999999887532211
Q ss_pred -----------------------e-EEEEEe--CCEEEEEecC----------------CcEEEEECCCCceeEEEecCC
Q 009274 385 -----------------------V-STLAVC--NGVLYSGSRD----------------GTIRLWSLSDHSLLTVLEEDS 422 (538)
Q Consensus 385 -----------------------v-~~l~~~--~~~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~~ 422 (538)
+ ..+++. .++++.+..+ +.|..+|.++|+.+..++..+
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 123444 5677777665 389999999999998887543
Q ss_pred CCc-------eEEEEEEc-CCC---CEEEEEeCCCcEEEEeCC--cceeeeccc-------------cceE---------
Q 009274 423 SGA-------VSSVLSLT-AVQ---HTLVVSHESGSIKVWRND--KFMKSMQTH-------------KGSV--------- 467 (538)
Q Consensus 423 ~~~-------~~~~~~~~-~~~---~~l~~~~~dg~i~iwd~~--~~~~~~~~h-------------~~~v--------- 467 (538)
... ........ .+| ..++.++.+|.++++|.. +.+...... ..++
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 211 11112232 567 467778899999999943 333322110 0011
Q ss_pred -------------------EEEEeCCCEEEEE---------------------------------e------CCCeEEEE
Q 009274 468 -------------------FAVFLEGKWLFTG---------------------------------G------WDKTVSVQ 489 (538)
Q Consensus 468 -------------------~~~~~~~~~l~sg---------------------------------s------~dg~v~iw 489 (538)
.+++++.+++++. + .+|.+..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 1222222222221 1 45889999
Q ss_pred ecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 490 ELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
|+.+++............. ..+...++.++.++.||.++.||..
T Consensus 459 D~~tG~~~W~~~~~~~~~~----g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 459 NAITGDYKWEKMERFAVWG----GTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp CTTTCCEEEEEEESSCCCS----BCEEETTTEEEEECTTSEEEEEETT
T ss_pred ECCCCCEEeEecCCCCccC----cceEecCCEEEEECCCCeEEEEECC
Confidence 9999998777654322111 1233457888889999999999864
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.8e-07 Score=80.60 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=128.0
Q ss_pred EEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCc-CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 009274 255 VTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH-KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (538)
Q Consensus 255 V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (538)
...+.|+ +.++.+.+.+|.|+++|+++++.+..+ -... .-..+++ .++.+.+....++.+.+||..+.+....+.
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4688888 566667778889999999999998887 3322 1233544 466787888889999999998766554444
Q ss_pred eecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecC--CC---CCeEEEEEeCCEEEEEe-cCCcEEE
Q 009274 333 KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG--HK---SAVSTLAVCNGVLYSGS-RDGTIRL 406 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~l~~~~~~l~s~s-~dg~i~i 406 (538)
.. .. -..++++++.|+.+..++.|.++|..+.+.+.++.. +. ..++.+.|.++.|++.. .++.|.+
T Consensus 134 ~~--~e------GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 134 YS--GE------GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLE 205 (268)
T ss_dssp CS--SC------CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred CC--Cc------eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEE
Confidence 31 11 125567888888887899999999999998887743 22 24577888866666665 5889999
Q ss_pred EECCCCceeEEEecC-----------CCCceEEEEEEcCCCCEEEEEe
Q 009274 407 WSLSDHSLLTVLEED-----------SSGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 407 wd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~ 443 (538)
.|.++++.+..+... ....+..-++++|+++.|++.+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999998887643 1223455579999776555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-06 Score=86.52 Aligned_cols=243 Identities=16% Similarity=0.152 Sum_probs=148.2
Q ss_pred EEEE--cCCE----EEEEeCCCcEEEEeCCCCceEEEEecCCc----CeE-EEEEecCCCCEEEEEc------CCCcEEE
Q 009274 257 GLAV--GGGF----LFSSSFDKSIHVWSLKDFSHVHTFKGHDH----KVM-AVVYVDEDQPLCISGD------SGGGIFV 319 (538)
Q Consensus 257 ~l~~--~~~~----l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~~l~s~~------~dg~i~v 319 (538)
.+++ .+.. ++.++.|+.+..+|..+|+.+........ .+. ..... ++ .++.++ .+|.|+.
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A 186 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTA 186 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEE
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEE
Confidence 3566 5444 88888999999999999999988764321 121 11111 33 344444 3799999
Q ss_pred EEccCCCCCcceeeecccC---------------------------------CceeeeEEEEeecCCEEEEeeCC-----
Q 009274 320 WSFSFPLGHEPLKKWNEEK---------------------------------DWRYSGIHALTTSGRYLYTGSGD----- 361 (538)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~l~sg~~d----- 361 (538)
+|..+++............ ....-...++.+....++.++.+
T Consensus 187 ~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~ 266 (599)
T 1w6s_A 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWN 266 (599)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred EECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcccc
Confidence 9998876543332211100 00000123455666777777665
Q ss_pred -----------CcEEEEECCCCceeEEecCCC----------CCeEEEEE---eC---CEEEEEecCCcEEEEECCCCce
Q 009274 362 -----------RTIKAWSLLDGTLSCTMSGHK----------SAVSTLAV---CN---GVLYSGSRDGTIRLWSLSDHSL 414 (538)
Q Consensus 362 -----------g~i~iwd~~~~~~~~~~~~h~----------~~v~~l~~---~~---~~l~s~s~dg~i~iwd~~~~~~ 414 (538)
+.|..+|..+|+.+..++... .++. +.. .+ ..++.++.+|.++++|.++|+.
T Consensus 267 ~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 267 ETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp GGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 389999999999998875422 1222 222 13 3677789999999999999998
Q ss_pred eEEEecCC-----------CCceE--------------------------EEEEEcCCCCEEEEEe--------------
Q 009274 415 LTVLEEDS-----------SGAVS--------------------------SVLSLTAVQHTLVVSH-------------- 443 (538)
Q Consensus 415 ~~~~~~~~-----------~~~~~--------------------------~~~~~~~~~~~l~~~~-------------- 443 (538)
+....... .+... ..++++|+..++++..
T Consensus 346 lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 425 (599)
T 1w6s_A 346 VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPY 425 (599)
T ss_dssp EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccc
Confidence 87765321 00000 1135666666655532
Q ss_pred -------------------------CCCcEEEEeCCc--ceeeeccccceEE--EEEeCCCEEEEEeCCCeEEEEecCCC
Q 009274 444 -------------------------ESGSIKVWRNDK--FMKSMQTHKGSVF--AVFLEGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 444 -------------------------~dg~i~iwd~~~--~~~~~~~h~~~v~--~~~~~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
.+|.+..||..+ .+..... ..+.. .+...+.+++.++.||.++.||.+++
T Consensus 426 ~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 426 KAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp CTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 236677777543 2222221 11111 13346788888999999999999999
Q ss_pred eeEeeeecCC
Q 009274 495 EFEEDVIPTG 504 (538)
Q Consensus 495 ~~~~~~~~~~ 504 (538)
+.........
T Consensus 505 ~~lW~~~l~~ 514 (599)
T 1w6s_A 505 DLLWKFKIPS 514 (599)
T ss_dssp CEEEEEECSS
T ss_pred CEEEEeeCCC
Confidence 9888776543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-06 Score=76.50 Aligned_cols=185 Identities=14% Similarity=0.116 Sum_probs=130.6
Q ss_pred cCCCc--EEEEEEc-CCEEEEEeCCC--cEEEEeCCCCceEEEEecCCcC-eEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 250 GHRDC--VTGLAVG-GGFLFSSSFDK--SIHVWSLKDFSHVHTFKGHDHK-VMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 250 ~h~~~--V~~l~~~-~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
.|... ...+.|+ +.++.+.+.+| .|+++|+++++.+..+...... -..++. .++.+.+....++.+.++|..
T Consensus 38 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 38 PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETT
T ss_pred cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECc
Confidence 45433 3788888 55556666665 8999999999999988754332 133444 356677777789999999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCC--C---CCeEEEEEeCCEEEEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH--K---SAVSTLAVCNGVLYSG 398 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h--~---~~v~~l~~~~~~l~s~ 398 (538)
+.+....+.... . -..++++++.|+....++.|.++|..+.+.+.++... . ..++.+.|.++.+++.
T Consensus 116 t~~~~~ti~~~~--e------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan 187 (262)
T 3nol_A 116 NLRQVRSFNYDG--E------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFAN 187 (262)
T ss_dssp TCCEEEEEECSS--C------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEECCC--C------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEE
Confidence 776554444311 1 1256678887777777889999999999988876532 1 3355678886666666
Q ss_pred e-cCCcEEEEECCCCceeEEEecC----------CCCceEEEEEEcCCCCEEEEEeC
Q 009274 399 S-RDGTIRLWSLSDHSLLTVLEED----------SSGAVSSVLSLTAVQHTLVVSHE 444 (538)
Q Consensus 399 s-~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~ 444 (538)
. .++.|.+.|.++++.+..+... ....+..-++++|+++.|++.+.
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 5 5889999999999998888653 11234455799998887777664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-06 Score=83.90 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=155.4
Q ss_pred CCeEEEEEeecCCCcEEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCceEEEEecC-------CcCeEEEEE
Q 009274 240 KGNVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGH-------DHKVMAVVY 300 (538)
Q Consensus 240 ~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~ 300 (538)
.....+..+.--..+ .++++ +++++.+. .++.|.++|..+++.+.++.-. ...-..+.+
T Consensus 107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~ 184 (426)
T 3c75_H 107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL 184 (426)
T ss_dssp TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence 333445555544455 78998 77777765 4679999999999998887632 123457889
Q ss_pred ecCCCCEEEEEcC-CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCceeEE-
Q 009274 301 VDEDQPLCISGDS-GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCT- 377 (538)
Q Consensus 301 ~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~- 377 (538)
+|+++.++++... ++.|.+.|+.+.+....+... .+..+.|++ +.+++.+.||.+.+.+..+++....
T Consensus 185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~---------g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP---------DCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---------SEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC---------CceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 9977766665543 689999999876544333221 012344443 4667777889888888866655432
Q ss_pred ---ecCCCCCe-EEEEEe--CCEEEEEecCCcEEEEECCCCcee--EEEecC--C-------CCceEEEEEEcCCCCEEE
Q 009274 378 ---MSGHKSAV-STLAVC--NGVLYSGSRDGTIRLWSLSDHSLL--TVLEED--S-------SGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 378 ---~~~h~~~v-~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~--~-------~~~~~~~~~~~~~~~~l~ 440 (538)
+.....++ ..+.+. ++.++..+..+.+.+.|....... ..+... . ..... .+.++++++.++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~-~va~s~dg~rly 334 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ-QTAYHRQSDRIY 334 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS-CEEEEGGGTEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce-eeEEcCCCCEEE
Confidence 21112221 123445 455556667889999998765422 111100 0 00000 147899988777
Q ss_pred EEeC----------CCcEEEEeCC--cceeeeccccceEEEE--EeCCC-EEEEEe-CCCeEEEEecCCCeeEeee
Q 009274 441 VSHE----------SGSIKVWRND--KFMKSMQTHKGSVFAV--FLEGK-WLFTGG-WDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 441 ~~~~----------dg~i~iwd~~--~~~~~~~~h~~~v~~~--~~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~~ 500 (538)
+... ++.|.++|.. +.+..+.... ...++ ++|++ ++++.. .++.|.++|+.+.+.....
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 7642 3579999954 4555554322 23344 45888 888888 5899999999999887664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.9e-06 Score=84.43 Aligned_cols=271 Identities=9% Similarity=-0.001 Sum_probs=159.2
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCe---------EEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 009274 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV---------MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (538)
Q Consensus 260 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v---------~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (538)
..++.++.++.++.|..+|..+|+.+..+....... ..+++. +..++.++.|+.+.-+|..+++....
T Consensus 66 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 66 VSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp EETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred EECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeCCCEEEEEECCCCCEEee
Confidence 346667777764559999999999999887543210 122231 23567778899999999988876543
Q ss_pred eeeecccCC--ceeeeEEEEe-ecCC-EEEEeeC------CCcEEEEECCCCceeEEecCCCCCe---------------
Q 009274 331 LKKWNEEKD--WRYSGIHALT-TSGR-YLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAV--------------- 385 (538)
Q Consensus 331 ~~~~~~~~~--~~~~~~~~~~-~~~~-~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v--------------- 385 (538)
......... .....+..-. .+++ .+++++. ++.|+.+|..+|+.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 332211100 0111111100 0122 6666653 7899999999999988764321100
Q ss_pred --------------------------EEEEEe--CCEEEEEec--------------------C----CcEEEEECCCCc
Q 009274 386 --------------------------STLAVC--NGVLYSGSR--------------------D----GTIRLWSLSDHS 413 (538)
Q Consensus 386 --------------------------~~l~~~--~~~l~s~s~--------------------d----g~i~iwd~~~~~ 413 (538)
..++++ .++++.+.. | +.|..+|.++|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 123444 456766653 2 589999999999
Q ss_pred eeEEEecCCCC------ceEEE-EEEc-CCCC---EEEEEeCCCcEEEEeCC--cceeeecccc-------------ce-
Q 009274 414 LLTVLEEDSSG------AVSSV-LSLT-AVQH---TLVVSHESGSIKVWRND--KFMKSMQTHK-------------GS- 466 (538)
Q Consensus 414 ~~~~~~~~~~~------~~~~~-~~~~-~~~~---~l~~~~~dg~i~iwd~~--~~~~~~~~h~-------------~~- 466 (538)
.+..++..+.. ....+ .... .+|+ .++.++.+|.++++|.. +.+....... .+
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 99888653211 11111 2222 4664 78889999999999943 3333222110 00
Q ss_pred --------------------E-------------EEEEeCCCEEEEEe--------------------------------
Q 009274 467 --------------------V-------------FAVFLEGKWLFTGG-------------------------------- 481 (538)
Q Consensus 467 --------------------v-------------~~~~~~~~~l~sgs-------------------------------- 481 (538)
+ .+++++...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 0 01112222333221
Q ss_pred -CCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 482 -WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 482 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.+|.|..||+.+++............. ..+...++.++.|+.||.++.||..
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~----g~~~tagglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHLPLWA----GVLATAGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESSCCCS----CCEEETTTEEEEECTTSEEEEEETT
T ss_pred CCcceEEEEECCCCCEEEEecCCCCCcc----cceEeCCCEEEEECCCCcEEEEECC
Confidence 368899999999998776654332211 1223357888899999999999865
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=9.9e-06 Score=77.44 Aligned_cols=218 Identities=11% Similarity=0.082 Sum_probs=130.5
Q ss_pred EEEEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 009274 255 VTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 255 V~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
..+.+|+ +..+++...++.|..||.++++.. .+. ....+.++++.+++. ++++. . ..|.+||..++.... +
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~-l~v~~-~-~gl~~~d~~~g~~~~-~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTL-H 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEE-E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCe-EEEEE-C-CCEEEEECCCCcEEE-E
Confidence 4566777 455666667889999999877543 333 356799999998655 44443 3 349999987654221 1
Q ss_pred eeecccCCceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEE-EEecCC
Q 009274 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLY-SGSRDG 402 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg 402 (538)
................++++|++.++... .+.|..+| +++... +..+......++|+ ++.++ +.+.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 11111111122234567888886555432 24566666 454332 32233456789998 33554 445678
Q ss_pred cEEEEECC--CC-cee--EEEe-cCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC-cceeeeccccceEEEEEe---
Q 009274 403 TIRLWSLS--DH-SLL--TVLE-EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQTHKGSVFAVFL--- 472 (538)
Q Consensus 403 ~i~iwd~~--~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~h~~~v~~~~~--- 472 (538)
.|.+||+. ++ +.. ..+. ..........++++++|++.++...++.|..||.. +....+..+...+.++++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecC
Confidence 99999986 55 321 1221 11112233447889999888877777899999953 445566666667888876
Q ss_pred CCCEEEEEe
Q 009274 473 EGKWLFTGG 481 (538)
Q Consensus 473 ~~~~l~sgs 481 (538)
+++.|+.++
T Consensus 282 d~~~L~vt~ 290 (326)
T 2ghs_A 282 DASRLLVTS 290 (326)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEe
Confidence 445554444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-06 Score=75.49 Aligned_cols=185 Identities=15% Similarity=0.080 Sum_probs=129.7
Q ss_pred cCC--CcEEEEEEcCCE-EEEEeCC--CcEEEEeCCCCceEEEEecCCcC-eEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 250 GHR--DCVTGLAVGGGF-LFSSSFD--KSIHVWSLKDFSHVHTFKGHDHK-VMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 250 ~h~--~~V~~l~~~~~~-l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
.|. .-...+.|+++. +.+.+.+ ..|+.+|+++++.+..+...... -..++.. ++.+......++.+.++|..
T Consensus 16 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC
Confidence 454 345689999544 4555554 48999999999999988754332 2334443 56677777889999999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCC-----CCeEEEEEeCCEEEEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-----SAVSTLAVCNGVLYSG 398 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~ 398 (538)
+.+....+... .. -..++++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.+.++.+++.
T Consensus 94 tl~~~~ti~~~--~~------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 94 TLTPRARFRYP--GE------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp TTEEEEEEECS--SC------CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEeCC--CC------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 76554444331 11 13566788877777778999999999998888775321 3567788887766666
Q ss_pred e-cCCcEEEEECCCCceeEEEecC-----------CCCceEEEEEEcCCCCEEEEEeC
Q 009274 399 S-RDGTIRLWSLSDHSLLTVLEED-----------SSGAVSSVLSLTAVQHTLVVSHE 444 (538)
Q Consensus 399 s-~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 444 (538)
. .+..|.+.|.++++.+..+... ....+..-++++|+++.|++.+.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5 5789999999999998887633 12234555799998777766654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-07 Score=85.72 Aligned_cols=251 Identities=12% Similarity=0.058 Sum_probs=142.1
Q ss_pred CcEEEEEEc--CCEEEEEe--CCCcEEEEeCCCCceEEEEe-------cCCcCeEEEEEecCCCCEEEEEcC-----CCc
Q 009274 253 DCVTGLAVG--GGFLFSSS--FDKSIHVWSLKDFSHVHTFK-------GHDHKVMAVVYVDEDQPLCISGDS-----GGG 316 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~-----dg~ 316 (538)
..+..++++ |+.+++.. .++.++||.+.+++. ..+. .|-..+.++++.+++. ++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCe
Confidence 678899998 67777753 234356666555543 2221 2456789999988644 5444332 578
Q ss_pred EEEEEccCCCCCcceeeecc-cCCceeeeEEEEeecCCEE-EEee---CCCcEEEEECCCCceeEEecCCCCCe---EEE
Q 009274 317 IFVWSFSFPLGHEPLKKWNE-EKDWRYSGIHALTTSGRYL-YTGS---GDRTIKAWSLLDGTLSCTMSGHKSAV---STL 388 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l-~sg~---~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l 388 (538)
|.+||+.+++....+..... ........-..+++++..+ ++.. .++.|.+||+.+++....+.+|.... ..+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 99999886643222221100 0000111234667655544 4444 57899999999888777666543221 112
Q ss_pred EEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC-cEEEEeCCcc----------e
Q 009274 389 AVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG-SIKVWRNDKF----------M 457 (538)
Q Consensus 389 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~----------~ 457 (538)
...+..+.+.+.++.++.|.. ... -++++|+++.|+.+..++ .+..++.... .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~---------------~~~-gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHL---------------GVN-GIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp EETTEECBEECTTSCEECCCC---------------CEE-EEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred eECCEEEEeccCCCceeceec---------------ccc-eeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 222345666777777765531 122 279999999898887766 4555542110 0
Q ss_pred e--eeccccceEE--EEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCCEEEEE
Q 009274 458 K--SMQTHKGSVF--AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGKLFVG 525 (538)
Q Consensus 458 ~--~~~~h~~~v~--~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sg 525 (538)
. ...++.+... +++.+|+++++...++.|.+||..+++........ .......+++ +++.|+..
T Consensus 239 ~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~----~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 239 SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE----KLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG----GGSCEEEEEECTTSCEEEE
T ss_pred cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC----ceecCCeeEECCCCcEEEE
Confidence 0 1112222222 33448888888888999999999555543332211 1223344444 46665543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.3e-06 Score=75.26 Aligned_cols=192 Identities=14% Similarity=0.057 Sum_probs=134.3
Q ss_pred cEEEEEEcC-CEEEEEeC---CCcEEEEeCCCCceEEEEecCC-cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 254 CVTGLAVGG-GFLFSSSF---DKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 254 ~V~~l~~~~-~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
....++|++ +.|+.++. ++.|++.|+.+++.+..+.-.. .....+++. ++.+.++.-.++.+.++|..+.+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 367899983 56665543 5899999999999998876322 233455554 5567777778999999999876544
Q ss_pred cceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCC-----CCeEEEEEeCCEEEEEe-cCC
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-----SAVSTLAVCNGVLYSGS-RDG 402 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~s-~dg 402 (538)
..+..- .... ..+++|++.++++..++.|.++|..+.+.+..+.-.. ...+.+.|.++.+++.. .++
T Consensus 100 ~~i~~g-~~~g------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~ 172 (266)
T 2iwa_A 100 KNFTHQ-MKDG------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTD 172 (266)
T ss_dssp EEEECC-SSSC------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS
T ss_pred EEEECC-CCCe------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCC
Confidence 433321 1111 3577888877777788999999999998887775321 23677888866666655 578
Q ss_pred cEEEEECCCCceeEEEecCC-----------CCceEEEEEEcCCCCEEE-EEeCCCcEEEEeCC
Q 009274 403 TIRLWSLSDHSLLTVLEEDS-----------SGAVSSVLSLTAVQHTLV-VSHESGSIKVWRND 454 (538)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 454 (538)
.|.+.|..+++.+..+.... ......-++++|+++.++ ++...+.+...++.
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 99999999999988886421 112334479999986555 55567888887743
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-09 Score=102.32 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=55.8
Q ss_pred cccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhc
Q 009274 68 GYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLN 146 (538)
Q Consensus 68 ~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 146 (538)
+.++|||||||+||+|+||+ ||.+...........+. ............+ .....+.+++.+||+
T Consensus 180 ~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~l~~li~~~l~ 245 (286)
T 3uqc_A 180 NPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERD------TAGQPIEPADIDR--------DIPFQISAVAARSVQ 245 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBC------TTSCBCCHHHHCT--------TSCHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHH------hccCCCChhhccc--------CCCHHHHHHHHHHcc
Confidence 47999999999999999999 99986543111000000 1111111111111 122248889999999
Q ss_pred cCCCCCcchhhHHHHHHHhhc
Q 009274 147 FDPGCRPLLTNVWKCIRELII 167 (538)
Q Consensus 147 ~~p~~r~~~~~~~~~l~~l~~ 167 (538)
.+|.+| ++.++.+.+.+...
T Consensus 246 ~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 246 GDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp TTSSCC-CHHHHHHHHHHHHC
T ss_pred cCCccC-CHHHHHHHHHHHhc
Confidence 999999 99999998888653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=0.00016 Score=78.23 Aligned_cols=279 Identities=9% Similarity=0.124 Sum_probs=160.9
Q ss_pred CCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEec-------CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 252 RDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-------HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 252 ~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
...|.++... .+.+..|+.++-+.+||..+++....... ....|.++...+++. + ..|+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-l-Wigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-L-WIGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-E-EEEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC-E-EEEeCC-hhheEcCC
Confidence 4568888876 66677777665689999877654432221 135688888765443 3 444444 68888876
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEec------CCCCCeEEEEEe-CCEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMS------GHKSAVSTLAVC-NGVL 395 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~l 395 (538)
+....................+.++..|.+ .+..|+.++-|..|+..++....... -....|.++..+ ++.|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 432111000000011111223445555433 57778887889999876543322111 124568999887 6678
Q ss_pred EEEecCCcEEEEECCCCceeEEEecC------CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeec-----cc
Q 009274 396 YSGSRDGTIRLWSLSDHSLLTVLEED------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQ-----TH 463 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~-----~h 463 (538)
..|+.++-|..||..+++........ ........+...++++.|..|+.++-+..||..+ ....+. .+
T Consensus 371 WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~ 450 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLV 450 (795)
T ss_dssp EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCS
T ss_pred EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcC
Confidence 88888888999998877644332111 0112233356677787577788877799998553 233332 23
Q ss_pred cceEEEEEeC-CCEEEEEeCCCeEEEEecCCCeeEeeeecC--CcccCCCceEEEEE-eCCEEEEEECCCeEEEEEc
Q 009274 464 KGSVFAVFLE-GKWLFTGGWDKTVSVQELAGDEFEEDVIPT--GAIPCGSVITALLY-WQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 464 ~~~v~~~~~~-~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~sg~~dg~v~vw~~ 536 (538)
...|.++..+ ...|..|+. +.+.+||..+++........ ... ....+..+.. +++.+..|+. +.|..|+.
T Consensus 451 ~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPV-VSKQITTLFRDSHKRLWIGGE-EGLSVFKQ 524 (795)
T ss_dssp CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBC-CCCCEEEEEECTTCCEEEEES-SCEEEEEE
T ss_pred CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccccc-CCceEEEEEECCCCCEEEEeC-CceEEEeC
Confidence 4578888773 234455555 45889999887654432210 111 1233455544 4777888887 44777764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.6e-05 Score=73.62 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=119.9
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCC-CCCcceeeecc-----cCCceeeeEEEEeecCCEEEEeeCC------CcEEEEEC
Q 009274 302 DEDQPLCISGDSGGGIFVWSFSFP-LGHEPLKKWNE-----EKDWRYSGIHALTTSGRYLYTGSGD------RTIKAWSL 369 (538)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~iwd~ 369 (538)
.+...+++++-.+++|+++|+.+. ......+.... ........-....|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 666777888889999999999654 22223332210 0011111223566888 77766655 78999999
Q ss_pred CCCceeEEecCCCC---CeEEEEEe--CCEEEEEe-------------------cCCcEEEEECCCCceeEEEecCCCCc
Q 009274 370 LDGTLSCTMSGHKS---AVSTLAVC--NGVLYSGS-------------------RDGTIRLWSLSDHSLLTVLEEDSSGA 425 (538)
Q Consensus 370 ~~~~~~~~~~~h~~---~v~~l~~~--~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 425 (538)
.+++.+.++..... .-+.+.|+ .+.+++.. .+.+|.+||+.+++.+.++.....+.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999998863222 23457777 45666664 37899999999998888887642222
Q ss_pred eEEEE--EEcCCCCEEEEEe------CCCcEEEEeCCc----ceeee--ccc----------------cceE--EEEEeC
Q 009274 426 VSSVL--SLTAVQHTLVVSH------ESGSIKVWRNDK----FMKSM--QTH----------------KGSV--FAVFLE 473 (538)
Q Consensus 426 ~~~~~--~~~~~~~~l~~~~------~dg~i~iwd~~~----~~~~~--~~h----------------~~~v--~~~~~~ 473 (538)
...-+ .++|+++++++++ .+++|.+|.... ..+.+ ... .... ..+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 22223 4599999988877 456777654211 01110 000 0112 235569
Q ss_pred CCEEEEEeC-CCeEEEEecC
Q 009274 474 GKWLFTGGW-DKTVSVQELA 492 (538)
Q Consensus 474 ~~~l~sgs~-dg~v~iwd~~ 492 (538)
|++|+++.. .+.|.+||+.
T Consensus 332 GrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp SCEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEeCCCCEEEEEEec
Confidence 999888886 5899999986
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.3e-05 Score=72.31 Aligned_cols=187 Identities=10% Similarity=-0.025 Sum_probs=113.1
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 373 (538)
-..+..|+|+++.++++...++.|..||..++.. ..+... .......++++++++++. .+ .|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~~~~---~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK----TVHALP---FMGSALAKISDSKQLIAS-DD-GLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEEECS---SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----EEEECC---CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc
Confidence 3467789998788888888889999999875432 111111 112234677888766654 44 49999998877
Q ss_pred eeEEecC---C-CCCeEEEEEe-CC-EEEEEec------CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEE
Q 009274 374 LSCTMSG---H-KSAVSTLAVC-NG-VLYSGSR------DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (538)
Q Consensus 374 ~~~~~~~---h-~~~v~~l~~~-~~-~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (538)
....... . ...+++++++ ++ ++++... .+.|..+| +++... +... .. ....++++++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~-~~-~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD-IS-IPNSICFSPDGTTGYF 195 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE-ES-SEEEEEECTTSCEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC-Cc-ccCCeEEcCCCCEEEE
Confidence 5433221 1 2357889998 33 4443332 24566666 454332 2211 11 2334789999987765
Q ss_pred E-eCCCcEEEEeCC--cc--------eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC
Q 009274 442 S-HESGSIKVWRND--KF--------MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 442 ~-~~dg~i~iwd~~--~~--------~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
+ +.++.|.+||.. .. ...+.........+.+ +|++.++...++.|.+||..+.
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~ 261 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN 261 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCC
Confidence 5 457889999953 21 1112223344556665 6777777666789999998543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.9e-06 Score=80.34 Aligned_cols=243 Identities=11% Similarity=0.051 Sum_probs=149.7
Q ss_pred CCeEEEEEeecCCCcEEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCceEEEEecCC-------cCeEEEEE
Q 009274 240 KGNVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGHD-------HKVMAVVY 300 (538)
Q Consensus 240 ~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~ 300 (538)
+....+.++..-..+ .+.++ +++++.+. .+++|.+||..+++.+.++..+. .....+++
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~ 131 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence 333445555544456 68998 77777775 37899999999999999987541 23467899
Q ss_pred ecCCCCEEEEEcC-CCcEEE--EEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCC-----
Q 009274 301 VDEDQPLCISGDS-GGGIFV--WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLD----- 371 (538)
Q Consensus 301 ~~~~~~~l~s~~~-dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~----- 371 (538)
+|++..++++... +..+.+ +|..+ +....... +..+.++++ .+++.+.||.+.+.|+.+
T Consensus 132 SpDGk~lyVan~~~~~~v~V~~iD~~t------v~~i~v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 132 CASSACLLFFLFGSSAAAGLSVPGASD------DQLTKSAS------CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSSCEEEEECSSSCEEEEEETTTEE------EEEEECSS------CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred cCCCCEEEEEccCCCCeEEEEEEchhh------ceEEECCC------ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 9988877666544 467888 88875 12111111 112334444 566677889998999876
Q ss_pred CceeE----EecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCc--eeEEEecCC-----CCceE---EEEEEcCCC
Q 009274 372 GTLSC----TMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHS--LLTVLEEDS-----SGAVS---SVLSLTAVQ 436 (538)
Q Consensus 372 ~~~~~----~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~-----~~~~~---~~~~~~~~~ 436 (538)
++... .+.....+. ... ++.++..+. +.+.+.|..+.. .+..+.... .+... ..+.+++++
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 44331 111123343 233 556566666 999999997543 222221110 00000 014799999
Q ss_pred CEEEEEeC---------CCcEEEEeCC--cceeeeccccceEEEEE--eCCC-EEEEEe-CCCeEEEEecCCCeeEeeee
Q 009274 437 HTLVVSHE---------SGSIKVWRND--KFMKSMQTHKGSVFAVF--LEGK-WLFTGG-WDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 437 ~~l~~~~~---------dg~i~iwd~~--~~~~~~~~h~~~v~~~~--~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~~~ 501 (538)
+.++++.. ++.+.++|.. +.+..+.... ...++. +||+ .+++.. .++.|.++|+.+.+......
T Consensus 276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 98887643 2356699954 4555555433 344554 4787 566666 59999999999998776554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00015 Score=66.80 Aligned_cols=230 Identities=15% Similarity=0.059 Sum_probs=136.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-----EEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeeccc
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (538)
.+|+.+.. +.|+.++++.... ...+.........++|.++++.++++-..++.|..++........ ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQ- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECT-
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEEC-
Confidence 45555553 4788888765432 112222234578999998778788888888999999987543211 1111
Q ss_pred CCceeeeEEEEeecCCEEE-EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEec---CCcEEEEECCC
Q 009274 338 KDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR---DGTIRLWSLSD 411 (538)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~i~iwd~~~ 411 (538)
........++.++++.++ +-...+.|.+++...................++++ ++.|+.+.. .+.|..+++..
T Consensus 77 -~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 77 -DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp -TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred -CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 111122456777655454 44556889999986543322222222456889998 456666654 36888888754
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCcc-e-eeeccccceEEEEEeCCCEEEEEe-CCCeEE
Q 009274 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF-M-KSMQTHKGSVFAVFLEGKWLFTGG-WDKTVS 487 (538)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~-~~~~~h~~~v~~~~~~~~~l~sgs-~dg~v~ 487 (538)
. ....+...... ....++++++++.|+.+. ..+.|..+|.... . ..+..- ..-..+++++..|+.+. .++.|.
T Consensus 156 ~-~~~~~~~~~~~-~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 156 T-NRRILAQDNLG-LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVI 232 (267)
T ss_dssp C-CCEEEECTTCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEETTEEEEEETTTTEEE
T ss_pred C-CcEEEEECCCC-CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEeCCEEEEEECCCCeEE
Confidence 3 33333222122 233478999877665554 5678999996532 1 112221 22245666666666655 458999
Q ss_pred EEecCCCeeEeeee
Q 009274 488 VQELAGDEFEEDVI 501 (538)
Q Consensus 488 iwd~~~~~~~~~~~ 501 (538)
.+|..+++......
T Consensus 233 ~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 233 AMDLAISKEMDTFH 246 (267)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEeCCCCCceEEEc
Confidence 99999887665543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.5e-06 Score=76.71 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=131.4
Q ss_pred eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 284 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
.+..+..+........|+++++.++++...++.|..|+.. +. ...+.... ......+++++|+++++...++.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~----~~~~~~~~--~~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT----VDVLLDAT--AFTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC----EEEEEESC--SCEEEEEECTTSCEEEEETTTTE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC----EEEEeCCC--CccceeeECCCCCEEEEECCCCE
Confidence 4444555566778899999887788899899999999873 22 12221111 11234577888886666556688
Q ss_pred EEEEECCCCceeEEec---C-CCCCeEEEEEe-CC-EEEE----Eec-------------CCcEEEEECCCCceeEEEec
Q 009274 364 IKAWSLLDGTLSCTMS---G-HKSAVSTLAVC-NG-VLYS----GSR-------------DGTIRLWSLSDHSLLTVLEE 420 (538)
Q Consensus 364 i~iwd~~~~~~~~~~~---~-h~~~v~~l~~~-~~-~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~ 420 (538)
|..||.. ++...... + ....+++++++ ++ ++++ |.. .+.|..+|..+++..... .
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~ 186 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D 186 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence 9999975 55322211 1 12346778888 34 5554 322 256888888777654333 1
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCC------CcEEEEeCCcc-ee---ee-ccccceEEEEE--eCCCEEEEEeCCCeEE
Q 009274 421 DSSGAVSSVLSLTAVQHTLVVSHES------GSIKVWRNDKF-MK---SM-QTHKGSVFAVF--LEGKWLFTGGWDKTVS 487 (538)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~-~~---~~-~~h~~~v~~~~--~~~~~l~sgs~dg~v~ 487 (538)
... ...++++|+++.|+++... +.|.+|+.... +. .+ ....+....+. .+|+ |.+++.+ .|.
T Consensus 187 --~~~-p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~ 261 (305)
T 3dr2_A 187 --LDH-PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVC 261 (305)
T ss_dssp --ESS-EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEE
T ss_pred --CCC-CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEE
Confidence 122 2337899999988887765 68999985421 11 11 11111122344 3777 4444444 599
Q ss_pred EEecCCCeeEeeeecCCcccCCCceEEEEEeCC-EEEEEECCCeEE
Q 009274 488 VQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVK 532 (538)
Q Consensus 488 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~v~ 532 (538)
+|+..+..... .... . .+..+.+.+++ .|+.++.++..+
T Consensus 262 ~~~~~g~~~~~-~~~~----~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 262 VFDSDGQLLGH-IPTP----G-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECTTSCEEEE-EECS----S-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EECCCCCEEEE-EECC----C-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 99986554332 2221 1 13333343444 577777765333
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=0.0002 Score=77.43 Aligned_cols=276 Identities=12% Similarity=0.171 Sum_probs=160.0
Q ss_pred EEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEE-ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 009274 255 VTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (538)
Q Consensus 255 V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (538)
|.++... ++.+..++.++.+..||..+++..... ..+...|.++...+++. +..|+.++.+..||..+........
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR--IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE--EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC--EEEEECCCCeEEEeCCCCeEEEeec
Confidence 8888886 666777777666899998776543321 12346688887755433 4455555558888876432111100
Q ss_pred eecccCCceeeeEEEEeecC-CEEEEeeCCCcEEEEECCCCceeEEecC-------CCCCeEEEEEe-CCEEEEEecCCc
Q 009274 333 KWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSG-------HKSAVSTLAVC-NGVLYSGSRDGT 403 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~-~~~l~s~s~dg~ 403 (538)
............+.++..+. ..+..|+.+ -|.+||..+++....... ....|.++..+ ++.+..|+.++-
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~G 331 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGG 331 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSC
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCC
Confidence 00000011112344555442 246666666 589999877654432211 23578999888 667888888888
Q ss_pred EEEEECCCCceeEEEecC----CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeec---------cccceEEE
Q 009274 404 IRLWSLSDHSLLTVLEED----SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQ---------THKGSVFA 469 (538)
Q Consensus 404 i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---------~h~~~v~~ 469 (538)
|..|+..++......... ........+...++|+ |..|+.++-|..||..+ ....+. .....|.+
T Consensus 332 l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 410 (795)
T 4a2l_A 332 LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKA 410 (795)
T ss_dssp EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEE
T ss_pred eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEE
Confidence 999987665432221110 0122233356666666 55677777799998653 222221 12356888
Q ss_pred EEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEEECCCeEEEEEc
Q 009274 470 VFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 470 ~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~v~vw~~ 536 (538)
+.. +++.|..|+.++.+..||..+++...........+ ...+.++... ++.|..|+.+| |.+|+.
T Consensus 411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~-~~~v~~i~~d~~g~lwigt~~G-l~~~~~ 478 (795)
T 4a2l_A 411 VYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLV-NENVYAILPDGEGNLWLGTLSA-LVRFNP 478 (795)
T ss_dssp EEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCS-CSCEEEEEECSSSCEEEEESSC-EEEEET
T ss_pred EEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcC-CCeeEEEEECCCCCEEEEecCc-eeEEeC
Confidence 876 45547888888889999998876544332111122 2344555444 67788888754 777764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-05 Score=75.94 Aligned_cols=215 Identities=11% Similarity=0.085 Sum_probs=132.3
Q ss_pred CEEEEEeCCCcEEEEeCCCC----ceEEEEe-------cCCcCeEEEEEecCCCCEEEEEcCC------CcEEEEEccCC
Q 009274 263 GFLFSSSFDKSIHVWSLKDF----SHVHTFK-------GHDHKVMAVVYVDEDQPLCISGDSG------GGIFVWSFSFP 325 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~----~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~ 325 (538)
..++++..+++|.++|+.+. +..++++ .....-..+..+|++ +++++..+ |.+.+.|..+.
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 34556777899999998755 5666663 111234566777866 66666554 78999998876
Q ss_pred CCCcceeeecccCCceeeeEEEEeecCCEEEEee-------------------CCCcEEEEECCCCceeEEecCC-C-CC
Q 009274 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-------------------GDRTIKAWSLLDGTLSCTMSGH-K-SA 384 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-------------------~dg~i~iwd~~~~~~~~~~~~h-~-~~ 384 (538)
+.......-..... ..--..++|+++.+++.. .+.+|.+||+.+++.+.++... . ..
T Consensus 175 ~v~~~~~~~~~~~~--~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 175 EPLGKWEIDRGDQY--LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp CEEEECCSBCTTCC--CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred eEEEEEccCCCCcc--ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 54433322111111 111246789999888875 3689999999999888887642 1 23
Q ss_pred eEEEEE--e--CCEEEEEe------cCCcEEEEECCCCce--eEEEecCC---C-------------CceEEEEEEcCCC
Q 009274 385 VSTLAV--C--NGVLYSGS------RDGTIRLWSLSDHSL--LTVLEEDS---S-------------GAVSSVLSLTAVQ 436 (538)
Q Consensus 385 v~~l~~--~--~~~l~s~s------~dg~i~iwd~~~~~~--~~~~~~~~---~-------------~~~~~~~~~~~~~ 436 (538)
...+.| + ++++++++ .+++|.+|....++. .+.+.... . +....-+.+++|+
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 456666 5 44555555 567888777655432 11111000 0 1122336899999
Q ss_pred CEEEEEeC-CCcEEEEeCC-----cceeeeccc----------------cceEEEEEeCCCEEEEEe
Q 009274 437 HTLVVSHE-SGSIKVWRND-----KFMKSMQTH----------------KGSVFAVFLEGKWLFTGG 481 (538)
Q Consensus 437 ~~l~~~~~-dg~i~iwd~~-----~~~~~~~~h----------------~~~v~~~~~~~~~l~sgs 481 (538)
++|.++.. .+.|.+||.. +.+..+... ...-..+++||++|+++.
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99988775 6899999953 223333221 123356677999999888
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-08 Score=93.81 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=49.1
Q ss_pred ccccccCcchhhhhhhhhhhhcC-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHh
Q 009274 65 FSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFC 142 (538)
Q Consensus 65 ~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 142 (538)
..++.++|||||||+||+|+||+ ||.......+. ....... . .......... ......+.+++.
T Consensus 173 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~--------~~~~~~~~~li~ 238 (299)
T 3m2w_A 173 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR-----M-GQYEFPNPEW--------SEVSEEVKMLIR 238 (299)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSC-----T-TCCSSCHHHH--------TTSCHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHh-----h-ccccCCchhc--------ccCCHHHHHHHH
Confidence 45678999999999999999999 99765433211 0000000 0 0000000000 112224788999
Q ss_pred hhhccCCCCCcchhhHHH
Q 009274 143 QCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 143 ~~l~~~p~~r~~~~~~~~ 160 (538)
+||+.+|.+||++.++.+
T Consensus 239 ~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 239 NLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp HHTCSSTTTSCCHHHHHT
T ss_pred HHcccChhhCCCHHHHhc
Confidence 999999999999888765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.4e-06 Score=79.91 Aligned_cols=202 Identities=8% Similarity=0.018 Sum_probs=122.7
Q ss_pred cCCCcEEEEEEc-CCEEEEEe-C-----CCcEEEEeCCCCceEEEEecC------CcCeEEEEEecCCCCEEEEEc---C
Q 009274 250 GHRDCVTGLAVG-GGFLFSSS-F-----DKSIHVWSLKDFSHVHTFKGH------DHKVMAVVYVDEDQPLCISGD---S 313 (538)
Q Consensus 250 ~h~~~V~~l~~~-~~~l~s~s-~-----dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~---~ 313 (538)
+|...+.+++++ ...|+.+. . ++.|.+||+.+++.+..+..+ ...+..+++.++++.++++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 466789999998 34444443 3 578999999999887777542 235689999876666666665 6
Q ss_pred CCcEEEEEccCCCCCcceee-----------ecccCC------------c-eeeeEEEEeecCCEEEEeeCCC-cEEEEE
Q 009274 314 GGGIFVWSFSFPLGHEPLKK-----------WNEEKD------------W-RYSGIHALTTSGRYLYTGSGDR-TIKAWS 368 (538)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~-----------~~~~~~------------~-~~~~~~~~~~~~~~l~sg~~dg-~i~iwd 368 (538)
++.|.+||+.+++....+.. ...... + ....-++++++++.|+++..++ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 88999999876532111100 000000 0 0122368889998888877665 555554
Q ss_pred CC---CCc-----eeE--EecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 009274 369 LL---DGT-----LSC--TMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (538)
Q Consensus 369 ~~---~~~-----~~~--~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (538)
.. .+. ... ...++......++++ +.++++...++.|.+||..+++........ .......+++.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g 302 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDG 302 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTS
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCC
Confidence 31 111 000 111334455678888 457777778899999998666643333322 12223346888888
Q ss_pred CEEEEEeCCCcEEEEe
Q 009274 437 HTLVVSHESGSIKVWR 452 (538)
Q Consensus 437 ~~l~~~~~dg~i~iwd 452 (538)
.++++.+..+.+.+|.
T Consensus 303 ~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEEEECCGGGSGGGB
T ss_pred cEEEEeCccccccccc
Confidence 8887776655544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 538 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-21 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.4 bits (233), Expect = 6e-22
Identities = 60/314 (19%), Positives = 102/314 (32%), Gaps = 37/314 (11%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GHR VT + + S+S D +I VW + T KGH V + + +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L + ++ +G ++ + S D+TIK
Sbjct: 73 LLASC------SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T +GH+ V + ++ S S D T+R+W ++ L E
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186
Query: 424 GAVS------------------SVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTH 463
L+ +IK+W + ++ H
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 464 KGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK 521
V V GK++ + DKT+ V + + T V + +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSLDFHKTAP 302
Query: 522 LFV-GCADRTVKVY 534
V G D+TVKV+
Sbjct: 303 YVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 246 KDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
L GH + V G+ GG F+ S + DK++ VW K+ + T H+H V ++ + +
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-HK 299
Query: 304 DQPLCISGDSGGGIFVW 320
P ++G + VW
Sbjct: 300 TAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.7 bits (122), Expect = 9e-08
Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 29/234 (12%)
Query: 332 KKWNEEKDWRYS------GIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS 383
K+W +Y+ + + + + S D TIK W G T+ GH
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 384 AVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443
+V ++ + S + + + S +S+ +V +
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 444 ESGSIKVW--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE---- 495
+IK+W + +K+ H+ V V +G + + D+TV V +A E
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180
Query: 496 ------------FEEDVIPTGAIPCGSVITALLYWQGKLF-VGCADRTVKVYYY 536
+ + + T G G D+T+K++
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.6 bits (228), Expect = 2e-21
Identities = 51/289 (17%), Positives = 89/289 (30%), Gaps = 48/289 (16%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+ V L + S D +I +W GH V+ + Y +
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG----------- 352
S + V + + + + +
Sbjct: 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126
Query: 353 ----------------------RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390
+Y+ + SGDRTIK W+ T++GHK ++ L
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 186
Query: 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
+ ++ SGS D TIRLW + + L V G V + +V G IKV
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRV----LEGHEELVRCIRFDNKRIVSGAYDGKIKV 242
Query: 451 W-----------RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSV 488
W ++++ H G VF + + + + D T+ +
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 42/293 (14%), Positives = 90/293 (30%), Gaps = 46/293 (15%)
Query: 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-------------------- 323
+ V + D +SG I +W +
Sbjct: 4 SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 324 -------------FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ + + L + + T S DR+I W +
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 371 DGTLSCTM---SGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS 427
T GH++AV+ + + + S S D TI++W+ S + L G
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN----GHKR 179
Query: 428 SVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKT 485
+ L +V +I++W ++ ++ H+ V + + K + +G +D
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 486 VSVQELAGDEFEEDVIPTGAIPC----GSVITALLYWQGKLFVGCADRTVKVY 534
+ V +L T + + L + + ++ D T+ ++
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 240 KGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVW 277
G + + L H V L + SSS D +I +W
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 93.3 bits (230), Expect = 2e-21
Identities = 46/290 (15%), Positives = 87/290 (30%), Gaps = 47/290 (16%)
Query: 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+ L+GH + + G L S+S D + +W + VH VM Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG------------------- 344
+ G + ++ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 345 --------------------IHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA 384
+L R +G+ D + K W + +G T +GH+S
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 385 VSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442
++ + +GS D T RL+ L L D+ + +S + L+
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 443 HESGSIKVW--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488
++ + VW + H V + + +G + TG WD + +
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 92.9 bits (229), Expect = 3e-21
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 10/151 (6%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321
S + D S +W +++ TF GH+ + A+ + + +G ++
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDDATCRLFD 254
Query: 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMS 379
+ D GI +++ S GR L G D W L + ++
Sbjct: 255 L-----RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 380 GHKSAVSTLAVCNG--VLYSGSRDGTIRLWS 408
GH + VS L V + + +GS D +++W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (126), Expect = 3e-08
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV-MAVVYVDED 304
GH + + G + S D + ++ L+ + T+ + + V +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
L ++G VW + + +T G + TGS D +
Sbjct: 282 GRLLLAGYDDFNCNVWDAL---KADRAGVLAGHDNRVSCL--GVTDDGMAVATGSWDSFL 336
Query: 365 KAWS 368
K W+
Sbjct: 337 KIWN 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 7e-20
Identities = 53/290 (18%), Positives = 104/290 (35%), Gaps = 19/290 (6%)
Query: 248 LQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306
L+GH D V T L G + S S D ++ VWS + T GH V +
Sbjct: 12 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM------ 65
Query: 307 LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
D+ + + + + S + + + + +GS D T++
Sbjct: 66 ----RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121
Query: 367 WSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426
W + G + GH +AV + + SG+ D +++W + L L+ ++
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 181
Query: 427 SSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDK 484
S +V SI+VW + ++ H+ + L+ L +G D
Sbjct: 182 SLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 237
Query: 485 TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVY 534
TV + ++ + + + + + + D TVK++
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 18/176 (10%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
LQGH + V L G + S S D SI VW ++ + +HT GH +
Sbjct: 171 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KD 227
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ +SG++ + +W + L+ N+ + + ++ T S D T+K
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVK 283
Query: 366 AWSLLDGTLSCT-----MSGHKSAVSTLAVCNG--VLYSGSRDGT----IRLWSLS 410
W L G G V + N V GSR+GT + +
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 9e-11
Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 20/248 (8%)
Query: 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCIS 310
H V + + + S S D ++ VW ++ +H GH AV V D +S
Sbjct: 96 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVS 152
Query: 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
G + VW L+ G ++ +GS D +I+ W +
Sbjct: 153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-------DGIHVVSGSLDTSIRVWDVE 205
Query: 371 DGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL 430
G T++GH+S S + + + +L SG+ D T+++W + L L+ + S+V
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVT 264
Query: 431 SLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQT-----HKGSVFAVFL--EGKWLFTGG 481
L ++ ++ S + G++K+W + +F++++ T G V+ + G
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324
Query: 482 WDKTVSVQ 489
+ T +
Sbjct: 325 RNGTEETK 332
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 1e-09
Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 20/260 (7%)
Query: 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE 336
W + KGHD V+ + + +SG + VWS + L+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAV---TGKCLRTLVG 55
Query: 337 EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY 396
+ + + +GS DRT+K W+ G T+ GH S V + + +
Sbjct: 56 HTGG----VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 397 SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RND 454
SGSRD T+R+W + L VL G V++V + +V +KVW +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLM----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 167
Query: 455 KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514
+ ++Q H V+++ +G + +G D ++ V ++ + S+ +
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSG 222
Query: 515 LLYWQGKLFVGCADRTVKVY 534
+ L G AD TVK++
Sbjct: 223 MELKDNILVSGNADSTVKIW 242
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.4 bits (199), Expect = 3e-17
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 23/170 (13%)
Query: 262 GGFLFSSSFDKSIHVWSLKD-------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314
G ++ + S D+++ VW + S + GH V +VV+ D +SG
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLD 275
Query: 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH-------ALTTSGRYLYTGSGDRTIKAW 367
+ +W+ K N H A T + Y+ +GS DR + W
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGV--------LYSGSRDGTIRLWSL 409
G + GH+++V ++AV NG +GS D R+W
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.5 bits (163), Expect = 8e-13
Identities = 42/278 (15%), Positives = 88/278 (31%), Gaps = 37/278 (13%)
Query: 242 NVKFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300
N+ + + G ++ + + + + + + +
Sbjct: 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170
Query: 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360
+SG + +W L + S G+Y+ GS
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD-----GKYIAAGSL 225
Query: 361 DRTIKAWSLLDGTLSCTM-------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD 411
DR ++ W G L + +GHK +V ++ + SGS D +++LW+L +
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Query: 412 HSLLT-----------VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMK 458
+ + V V SV + T ++ + + W ++ +
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSV-ATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344
Query: 459 SMQTHKGSVFAVFL--------EGKWLFTGGWDKTVSV 488
+Q H+ SV +V + E TG D +
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.8 bits (143), Expect = 3e-10
Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 21/200 (10%)
Query: 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332
++ +W L+ T D V + + + +G + VW E L
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI-AAGSLDRAVRVWDSETGFLVERLD 244
Query: 333 KWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDG------------TLSCTM 378
NE ++++ + G+ + +GS DR++K W+L + T T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 379 SGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG----AVSSVLSL 432
GHK V ++A + SGS+D + W + L +L+ + AV++ SL
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 433 TAVQHTLVVSHESGSIKVWR 452
+ ++W+
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 251 HRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV-----DE 303
H+D V +A ++ S S D+ + W K + + +GH + V++V
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 304 DQPLCISGDSGGGIFVWSF 322
+ + +G +W +
Sbjct: 367 EYNVFATGSGDCKARIWKY 385
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.5 bits (155), Expect = 8e-12
Identities = 53/311 (17%), Positives = 100/311 (32%), Gaps = 34/311 (10%)
Query: 248 LQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306
L+GH V T L ++ + + DK I V+ + + GHD V A+ Y
Sbjct: 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 307 LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
+ SG + + +Y+ TGS D T+
Sbjct: 68 V-----SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 367 WSLLDGTL-----------------------SCTMSGHKSAVSTLAVCNGVLYSGSRDGT 403
W L + + GH ++V T++ ++ SGS D T
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182
Query: 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTH 463
+ +W ++ L +L + S++ + + I N + M ++Q H
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242
Query: 464 KGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLF 523
V + L K+L + D ++ + + T Y +
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI-----TTFYVSDNIL 297
Query: 524 VGCADRTVKVY 534
V ++ +Y
Sbjct: 298 VSGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 4e-06
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 377 TMSGHKSAVST-LAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL----S 431
T+ GH ++V T L + + +G+ D IR++ + L L G V ++
Sbjct: 7 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGG 65
Query: 432 LTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQEL 491
+ T K F T + + K++ TG D T+ V +L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 492 AGDE 495
+
Sbjct: 126 PKES 129
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 10/204 (4%)
Query: 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCIS 310
H V ++ G + S S+D ++ VW + ++ GH ++ + +Y E + +
Sbjct: 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 219
Query: 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ L + R S + + +
Sbjct: 220 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF-------LVSAAADGSIRGWDAND 272
Query: 371 DGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL 430
+ SA++T V + +L SGS + +++L L+ + + SV
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVN 331
Query: 431 SLTAVQHTLVVSHESGSIKVWRND 454
+ + + G + D
Sbjct: 332 FKG--KTLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVH-TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320
+ S + ++++L+ VH ++ +V + + + L + + G F+
Sbjct: 293 SDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTLVAAVEKDGQSFLE 350
Query: 321 SFSF 324
F
Sbjct: 351 ILDF 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 1e-10
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 7/140 (5%)
Query: 275 HVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
K + T V V + + I+ S I +
Sbjct: 188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIE 245
Query: 335 NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--- 391
++++ + + T D TI+ W + + K + V
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305
Query: 392 --NGVLYSGSRDGTIRLWSL 409
NG + S S DGT+ + L
Sbjct: 306 TGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 3e-05
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV--MAVVYVDEDQPLCISGDSGGGIFV 319
+ D +I VW + V + ++ V V IS G +
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 320 W 320
+
Sbjct: 323 Y 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 6e-05
Identities = 24/213 (11%), Positives = 63/213 (29%), Gaps = 11/213 (5%)
Query: 249 QGHRDCVTGLAV----GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED 304
Q ++ ++ + D S + + GH ++ A
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
++ G + + + +++ + + SG ++ T DR I
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD-VEFSPDSGEFVITVGSDRKI 230
Query: 365 KAWSLLDGTLSCTMSGHKSAVSTLAVC-----NGVLYSGSRDGTIRLWSLSDHSLLTVLE 419
+ G + + V + + D TIR+W ++ +
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290
Query: 420 EDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVW 451
D + + + A + ++S G++ +
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 14/194 (7%), Positives = 39/194 (20%), Gaps = 14/194 (7%)
Query: 238 LSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSH-------VHTFKG 290
+ + + D L+ S+ +
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS-GIHALT 349
V ++ S + + + +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 350 TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLW 407
Y + + + ++ K+ ++ L + + + DG I +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341
Query: 408 SLSDHSLLTVLEED 421
L +E D
Sbjct: 342 PLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 19/171 (11%), Positives = 45/171 (26%), Gaps = 18/171 (10%)
Query: 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-------TMSGHKSAVS 386
+ + + A + LY S + + S + + +
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 231
Query: 387 TLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-----TL 439
+ +G D S ++ SS+L + H
Sbjct: 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 291
Query: 440 VVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488
+ E G + + D + + K ++ + L + K + D +
Sbjct: 292 QGAPEKGVLLKY--DVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 15/196 (7%)
Query: 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF---VWSFSFP 325
++IHV+ ++ + H D +S S V +FSF
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215
Query: 326 LGHEPLK---KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW-SLLDGTLSCTMSGH 381
+ +P + + +G Y R+ D + +
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 275
Query: 382 KSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439
S G + + + + V ++ + L+A + T+
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-----KNNLTDL-RLSADRKTV 329
Query: 440 VVSHESGSIKVWRNDK 455
+V + G I + +K
Sbjct: 330 MVRKDDGKIYTFPLEK 345
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.3 bits (139), Expect = 7e-10
Identities = 36/321 (11%), Positives = 76/321 (23%), Gaps = 71/321 (22%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFK---GHDHKVMAVVYVD 302
Q +D ++ + + L +S+D S+ V+ + + H ++ ++D
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 303 EDQPLCISGDSGGGIFVWSF---------------------------------------- 322
G G I
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 323 ----SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378
++ G +K N + I + T+ L G + ++ + L
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 379 SGHKSAVSTLAVC------NGVLYSGSRDGTIRLWSLSDHSLLTVLEED----------- 421
+ S DG + + D +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 422 --SSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQT-HKGSVFAVFLEGKW 476
+ + + + L + G I W + K +K+ ++ SV +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306
Query: 477 LFTGGWDKTVSVQELAGDEFE 497
L D T E
Sbjct: 307 LCLATSDDTFKTNAAIDQTIE 327
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 4/91 (4%)
Query: 377 TMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE--DSSGAVSSVLSL 432
K +S + + +L S DG++ ++ + L + + +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 433 TAVQHTLVVSHESGSIKVWRNDKFMKSMQTH 463
+ V G I
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALT 96
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.001
Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 26/143 (18%)
Query: 261 GGGFLFSSSFDKSIHVWSL---------------KDFSHVHTFKGHDHKVMAVVYVDEDQ 305
SS D + V + + V ++ +
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPRH 263
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ S G I W+ + +K + + + + + S L + D T K
Sbjct: 264 KFLYTAGSDGIISCWNLQ---TRKKIKNFAKFNEDS---VVKIACSDNILCLATSDDTFK 317
Query: 366 AWSLLDGTLSCTMSGHKSAVSTL 388
+ +D T+ + S++ +
Sbjct: 318 TNAAIDQTI----ELNASSIYII 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 5e-09
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 5/145 (3%)
Query: 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328
S D + D + ++ + + L S
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 329 EPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386
K + S + +L + G++ + D + AW G S S+V
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVL 310
Query: 387 TLAVC--NGVLYSGSRDGTIRLWSL 409
+ + + + +GS D ++ +
Sbjct: 311 SCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 6e-08
Identities = 31/292 (10%), Positives = 78/292 (26%), Gaps = 14/292 (4%)
Query: 250 GHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHT-----FKGHDHKVMAVVYVD 302
H + V + + +++ + VW + + D+ + + +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362
+ L + G++ + Y+ + + + G+
Sbjct: 108 DGCTLIVGGEAS--TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS 422
+ ++ ++ L++G D T+R W L + L + S
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225
Query: 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGW 482
+ S + V + DK+ + GKW + G
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 483 DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVY 534
D ++ + ++ + + G D+ VY
Sbjct: 286 DNLLNAWRTPYGASIFQSKESSSVLS----CDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321
G + S+ D ++ W + + V++ + D ++G V+
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD-ISVDDKYIVTGSGDKKATVYE 334
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 21/201 (10%), Positives = 52/201 (25%), Gaps = 41/201 (20%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLK----DFSHVHTFKGHDHK--------V 295
+ H + ++ F S S D + VW K + ++ HK +
Sbjct: 10 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT------ 349
A+ + L + G + + + + + + H+
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 350 ----TSGRYLYTGSGDRTIKAWSLLDG------------------TLSCTMSGHKSAVST 387
L T W + ++
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 388 LAVC-NGVLYSGSRDGTIRLW 407
+ + G++ +G +GT+++
Sbjct: 190 VDISERGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 3e-07
Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 44/201 (21%)
Query: 380 GHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG----------AVSSV 429
H + + +++ CN S S DG +++W ++ S V
Sbjct: 12 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 430 LSLTAVQHTLVVS-HESGSIKVWR------------NDKFMKSMQTHKGSVFAV------ 470
+ A + LV + SG + +R + K S +A+
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 471 -FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---------- 519
L L T + + E + + P + +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 520 ----GKLFVGCADRTVKVYYY 536
G + G + TV++
Sbjct: 192 ISERGLIATGFNNGTVQISEL 212
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 9e-07
Identities = 19/226 (8%), Positives = 53/226 (23%), Gaps = 28/226 (12%)
Query: 244 KFKDLQGHRDCVTGLAV-GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV- 301
+ T + + G + + + ++ + L ++ F+ + +
Sbjct: 176 TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235
Query: 302 ----DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI-----------H 346
L + E + + + +
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRL 406
+ SG L + D ++ W + T++ H + V G +
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355
Query: 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452
+ + + +L SI+ +R
Sbjct: 356 FDVKFLK-----------KGWRSGMGADLNESLCCVCLDRSIRWFR 390
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 5e-04
Identities = 38/332 (11%), Positives = 82/332 (24%), Gaps = 62/332 (18%)
Query: 253 DCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKG----------HDHKVMAVVYVD 302
+ A + ++SF + + + H A+ +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 303 EDQPLC----ISGDSGGGIFVWSF-SFPLGHEPLKKWNEEKDWRYSGIHALTTSGR---- 353
+ L ++ D G ++W F F L + + T +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 354 -------YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYS--------G 398
+ TG + T++ L S ++ V +S
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH--------------E 444
+ +L + + S SS SL H+ V
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309
Query: 445 SGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIP 502
G ++ W + + + ++ H + G V ++
Sbjct: 310 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK---------- 359
Query: 503 TGAIPCGSVITALLYWQGKLFVGCADRTVKVY 534
+ G L C DR+++ +
Sbjct: 360 --FLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 2e-08
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVST---LAV 390
+ G + + S D+TIK W++ + T+ +
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291
Query: 391 CNGVLYSGSRDGTIRLW 407
L S S +G I
Sbjct: 292 TKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (109), Expect = 3e-06
Identities = 29/297 (9%), Positives = 72/297 (24%), Gaps = 16/297 (5%)
Query: 249 QGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLC 308
+G + G + + S++ + + + H H+ C
Sbjct: 17 RGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYC 73
Query: 309 ISGDSGGGIFVWSFSFP-----------LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357
SGD G + +W + G W+ E + G
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
+G S + + + + +H+
Sbjct: 134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWL 477
+ + L + V+ +D + +G +
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253
Query: 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVY 534
+ DKT+ + +A + E+ + +++ + L A+ +
Sbjct: 254 ASASADKTIKIWNVATLKVEKTI--PVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454
+ S S D TI++W+++ + + + L + + LV +G I +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.1 bits (125), Expect = 3e-08
Identities = 39/296 (13%), Positives = 71/296 (23%), Gaps = 17/296 (5%)
Query: 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDED 304
GH +T L+ G LFS+ + I+ W + F H + + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
+S P G + + S L S +
Sbjct: 68 DLFTVSW------DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 365 KAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424
A +S + S V+ V G +
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLE-----GKWLFT 479
S S N+ + + V L T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFV-GCADRTVKVY 534
G D +V V + ++ + I S + ++++ V D +K +
Sbjct: 242 GSLDNSVIVWNM--NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.0 bits (117), Expect = 3e-07
Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 4/164 (2%)
Query: 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCIS 310
+ +A+ F + + V K + + V
Sbjct: 135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194
Query: 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ V +S E + + + L TGS D ++ W++
Sbjct: 195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 254
Query: 371 DGTLSCTM---SGHKSAVSTLAVCNG-VLYSGSRDGTIRLWSLS 410
+ + + S+V+++ N + S +D I+ W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 1e-06
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 372 GTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429
G++ GH A++ L+ L+S +G I W +S V + + ++ +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 6/67 (8%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 346 HALTTSGRYLYTGSGDRTIKAWSLLDGTLSC--TMSGHKSAVSTLAVC--NGVLYSGSRD 401
HA + + + + + H V+ + + + + D
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 402 GTIRLWS 408
+W+
Sbjct: 73 RNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 42/325 (12%), Positives = 86/325 (26%), Gaps = 35/325 (10%)
Query: 239 SKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV-HTFKGHDHKV 295
V+ +L+ H VTG+ + + D++ +VW+LK + ++
Sbjct: 38 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 97
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355
V ++ G I + F K + + + L
Sbjct: 98 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW-HPNSVLL 156
Query: 356 YTGSGDRTIKAWSLLDGTLS------------------CTMSGHKSAVSTLAVCNGVLYS 397
GS D + +S + S V +
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 398 G--SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND- 454
S D T+ L + L ++ ++ +LV + ++ D
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE---SSLVAAGHDCFPVLFTYDS 273
Query: 455 -----KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCG 509
F + K S DK S + A D + ++
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRGL--TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 331
Query: 510 SVITALLYWQGKLFVGCADRTVKVY 534
SV++ + D + ++
Sbjct: 332 SVLSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 34/268 (12%)
Query: 249 QGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSL--KDFSHVHTFKGHDHKVMAVVYVDED 304
+ ++ A + + +H++ + VH K H+ +V V + D
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APD 62
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
++ + +VW+ + R + + + GSG R I
Sbjct: 63 SNRIVTCGTDRNAYVWTLKG---RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 365 KAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY------SGSRDGTIRLWSLSDHSLLTV- 417
K + + + +GS D R++S +
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179
Query: 418 -------------LEEDSSGAVSSVLSLTAVQHTLVVSHES--GSIKVWRNDKFMKSMQT 462
L +SS + V + + V+ S ++ + DK M
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239
Query: 463 HKGS----VFAVFLEGKWLFTGGWDKTV 486
+ E + G V
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPV 267
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 16/199 (8%), Positives = 41/199 (20%), Gaps = 10/199 (5%)
Query: 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328
+ + + V V + + + +
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAV 236
Query: 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388
L T + G D ++ + G
Sbjct: 237 ATLASETLPLLA-----VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQS 290
Query: 389 AVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL---TAVQHTLVVSHES 445
+ ++ + S + L+ +VS + L A +
Sbjct: 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 446 GSIKVWRNDKFMKSMQTHK 464
G + +W +++ K
Sbjct: 351 GGMSIWDVRSLESALKDLK 369
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 2e-07
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC- 391
G + + TGS D I +S+ + ++ HK V+ L
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 392 NGVLYSGSRDGTIRLWS 408
L S D I+ W+
Sbjct: 269 PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 1e-05
Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 17/290 (5%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
+ GH +T L V L S S+D I WS + H + ++++ +
Sbjct: 9 ISGHNKGITALTVNP--LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYS 61
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367
IS D + + + N + + IK+
Sbjct: 62 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND----DDLLILQSFTGDIIKSV 117
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS 427
L + ++S + AV ++ S + + + S
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 428 SVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGS---VFAVFLEGKWLFTGGWDK 484
+ + + W + + K + +E + TG D
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 485 TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVY 534
+ + + +I V L L AD +K +
Sbjct: 238 NIFIYSVKRP---MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 9e-04
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 377 TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429
T+SGH ++ L V L SGS DG I WS S + +D S + S+
Sbjct: 8 TISGHNKGITALTVNP--LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 5e-06
Identities = 26/323 (8%), Positives = 76/323 (23%), Gaps = 50/323 (15%)
Query: 257 GLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED-QPLCISGDS 313
G A+ G ++ +++ ++HV + + + D + D + + +
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 314 GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH-ALTTSGRYLYTGSGDRT--------- 363
G I+ + + S A++ G+ +Y
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120
Query: 364 ---IKAWSLLDGTLSCTMSGHKSAVSTLAVCNG----VLYSGSRDGTIRLWSLSDHSLLT 416
++ +S DG + + + + +G + + + L
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP 180
Query: 417 VLEEDSSGAVS--------------------SVLSLTAVQHTLVVSHESGSIKVWR---N 453
+ + G + ++ + +
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240
Query: 454 DKFMKSMQTHKGSVFAVFLEGKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVI 512
+ F K ++ +L +
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK-LIKAANLDHTYYCVAF 299
Query: 513 TALLYWQGK-LFVGCADRTVKVY 534
+G L++G + V+
Sbjct: 300 DK----KGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/246 (9%), Positives = 53/246 (21%), Gaps = 19/246 (7%)
Query: 249 QGHRDCVTGLAV--GGGFLFSSSFDKSIHVW-SLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
+ A+ G ++++ + + F D V
Sbjct: 85 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 144
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ ++ + +K AL S +
Sbjct: 145 RQVYLMRAADDGSLYVAGPDIYKMDVKTGKY--------TVALPLRNWNRKGYSAPDVLY 196
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA 425
W +M + + L T D +
Sbjct: 197 FWPHQSPRHEFSMLYTIARFKD---DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253
Query: 426 VSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFL-EGKWLFTGGW 482
+ L + + + + + K +K+ F +G L+ GG
Sbjct: 254 YFTGLRSP--KDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT 311
Query: 483 DKTVSV 488
++V
Sbjct: 312 FNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 37.8 bits (86), Expect = 0.002
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 9/142 (6%)
Query: 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCIS 310
+ ++ LK ++ P I
Sbjct: 209 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 268
Query: 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ + + +K N + Y + A G LY G + ++
Sbjct: 269 -GVLNRLAKYDLK---QRKLIKAANLDH--TYYCV-AFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 371 DGTL--SCTMSGHKSAVSTLAV 390
+ + G + +T V
Sbjct: 322 TLEKVKNIKLPGGDMSTTTPQV 343
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.8 bits (102), Expect = 3e-05
Identities = 18/228 (7%), Positives = 42/228 (18%), Gaps = 32/228 (14%)
Query: 342 YSGIHALTTSGRYLY----------TGSGDRTIKAWSLLDGTLSCTMSGHK-------SA 384
+ + SG G ++ + + +
Sbjct: 66 FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125
Query: 385 VSTLAVCNG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS-----SVLSLTAVQ 436
V + C +L+ S+ S + + S + + +
Sbjct: 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPA 185
Query: 437 HTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAG--- 493
+ Q G ++ AG
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 494 ----DEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537
D E G + A L + + + +
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 25/282 (8%), Positives = 61/282 (21%), Gaps = 44/282 (15%)
Query: 247 DLQGHRDCVTGLAV---GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV----V 299
+ V G + + +S+ L + +
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGH------EPLKKWNEEKDWRYSGIHALTTSGR 353
+ D +S + + F E L + + R + A G
Sbjct: 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147
Query: 354 YLYTGSGDRTIKAW-------------------SLLDGTLSCTMSGHKSAVSTLAVC--- 391
LY D + + D ++T
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207
Query: 392 -NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
+ + L + + S ++
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMR---EVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264
Query: 451 W--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488
+ + +K + S ++V + +G ++ GG ++
Sbjct: 265 FDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.5 bits (85), Expect = 0.003
Identities = 6/119 (5%), Positives = 31/119 (26%), Gaps = 8/119 (6%)
Query: 353 RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-----NGVLYSGSRDGTIRLW 407
Y+ + + + ++ + + + + ++ ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 408 SLSDHSLL---TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTH 463
L L + + +L+ TL + +++ + + +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 12/194 (6%), Positives = 34/194 (17%), Gaps = 22/194 (11%)
Query: 249 QGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHV---------------HTFKGHDH 293
G + + + + + F
Sbjct: 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT 215
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
+ + + + + + G + I+ L
Sbjct: 216 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY----HRALDRIYLLVDQRD 271
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG---VLYSGSRDGTIRLWSLS 410
+ R + G S + + + D T+ +
Sbjct: 272 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
Query: 411 DHSLLTVLEEDSSG 424
L + + G
Sbjct: 332 SGEELRSVNQLGHG 345
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (84), Expect = 0.004
Identities = 25/217 (11%), Positives = 50/217 (23%), Gaps = 26/217 (11%)
Query: 347 ALTTSGRYLY-----TGSGDRTIKAWSLLDGTLSCTMSGHKS---AVS----TLAVCN-- 392
A R +Y + G + + G V+ +A +
Sbjct: 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTV 67
Query: 393 -GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVSHESG 446
+ G R + ++ +E + G + SLT TL+ S
Sbjct: 68 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 127
Query: 447 SIKVWRND----KFMKSMQTHKGS-VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVI 501
+ V D F + + +F + ++ G
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187
Query: 502 PTGAIPCGSVIT-ALLYWQGKLFVGCADRTVKVYYYG 537
+ A G+L +
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 224
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (92), Expect = 7e-04
Identities = 19/157 (12%), Positives = 36/157 (22%), Gaps = 25/157 (15%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLS-----CTMSGHKSAVSTLAV---CNGVLYSG 398
L+ SGRYL+ D + L + S +S ++ +
Sbjct: 68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127
Query: 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH----------ESGSI 448
+ + ++ SH E+G I
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187
Query: 449 KVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKT 485
+ ++L GG D +
Sbjct: 188 LLV-------DYTDLNNLKTTEISAERFLHDGGLDGS 217
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 538 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.79 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.72 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.69 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.69 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.68 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.67 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.66 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.66 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.65 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.65 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.64 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.64 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.64 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.63 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.62 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.62 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.62 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.62 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.62 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.62 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.61 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.61 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.61 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.61 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.61 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.6 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.6 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.6 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.6 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.6 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.59 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.58 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.58 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.58 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.58 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.57 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.57 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.56 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.56 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.56 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.56 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.55 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.55 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.54 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.53 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.52 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.52 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.52 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.51 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.51 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.51 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.5 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.5 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.47 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.46 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.42 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.42 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.4 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.35 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.35 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.33 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.28 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.27 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.25 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.21 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.2 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.19 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.1 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.94 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.89 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.76 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.75 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.67 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.65 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.47 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.42 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.41 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.31 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.19 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.17 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.13 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.13 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.05 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.88 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.72 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.68 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.46 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.41 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.28 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.27 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.14 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.03 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.75 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.75 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.68 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.65 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.56 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.45 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.45 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.93 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.78 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.43 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.4 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.76 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.35 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.18 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 91.35 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 87.65 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 87.58 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.69 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 86.42 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 85.53 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 82.22 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 80.18 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.8e-35 Score=282.66 Aligned_cols=282 Identities=17% Similarity=0.303 Sum_probs=225.6
Q ss_pred CCeEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCce-----EEEEecCCcCeEEEEEecCCCCEEEEEc
Q 009274 240 KGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (538)
Q Consensus 240 ~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 312 (538)
.....+.++ +|...|+|++|+ +++|+||+ ||.|+|||+.++.. .....+|.+.|.+++|+|++ .+|++|+
T Consensus 40 ~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~ 116 (337)
T d1gxra_ 40 RHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGG 116 (337)
T ss_dssp SEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEE
T ss_pred CCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEee
Confidence 333455666 799999999999 89999987 89999999976432 22335789999999999965 5789999
Q ss_pred CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC- 391 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~- 391 (538)
.||.|++||+....... ......+. ......++++++.++++++.|+.|++||+.++++.....+|...|.+++|+
T Consensus 117 ~dg~i~iwd~~~~~~~~-~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 193 (337)
T d1gxra_ 117 EASTLSIWDLAAPTPRI-KAELTSSA--PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp SSSEEEEEECCCC--EE-EEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ccccccccccccccccc-cccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999987543221 12222222 222345788899999999999999999999999999999999999999998
Q ss_pred -CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-ceeeeccccceEEE
Q 009274 392 -NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFA 469 (538)
Q Consensus 392 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~h~~~v~~ 469 (538)
+..+++++.|+.+++||+++++.+..+.. ...+.. ++++|+++++++|+.|+.+++||... .......|...|.+
T Consensus 194 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~--~~~i~~-l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 270 (337)
T d1gxra_ 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFS-LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS 270 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEE-EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEE
T ss_pred cccccccccccccccccccccceeeccccc--ccceEE-EEEcccccccceeccccccccccccccccccccccccccce
Confidence 56999999999999999999998877764 334444 68999999999999999999999654 34566789999999
Q ss_pred EEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEE-EEeCC-EEEEEECCCeEEEEEc
Q 009274 470 VFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQG-KLFVGCADRTVKVYYY 536 (538)
Q Consensus 470 ~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~sg~~dg~v~vw~~ 536 (538)
+.| ++++|++++.||.|++||+.+++......+. . .+..+ +.+++ .|++|+.||+|+|||+
T Consensus 271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-----~-~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-----S-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-----S-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC-----C-CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 987 8899999999999999999998876655432 2 34444 44555 5888999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.1e-34 Score=274.13 Aligned_cols=277 Identities=23% Similarity=0.339 Sum_probs=230.1
Q ss_pred EEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 246 ~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
+.|+||.++|++++|+ +++|+||+.||+|+|||+++++.+.++++|...|.+++|+|+ +.+++++..++.+.+|+..
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETT
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecc-ccccccccccccccccccc
Confidence 5689999999999998 899999999999999999999999999999999999999884 5678899999999999987
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecC
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d 401 (538)
.......... +. .......++++++.+++++.|+.+++||+++++.+..+.+|...+.+++|+ +.++++++.|
T Consensus 90 ~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 164 (317)
T d1vyhc1 90 GFECIRTMHG---HD--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164 (317)
T ss_dssp SSCEEECCCC---CS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccc---cc--ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence 5543222221 11 223356788899999999999999999999999999999999999999999 5699999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCC--cceee
Q 009274 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV--------------------QHTLVVSHESGSIKVWRND--KFMKS 459 (538)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~--~~~~~ 459 (538)
+.|++|++.+++....+..+.. .+.. +.++|+ +..+++++.|+.|++||.. +++..
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 242 (317)
T d1vyhc1 165 QTVRVWVVATKECKAELREHRH-VVEC-ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242 (317)
T ss_dssp SCEEEEETTTCCEEEEECCCSS-CEEE-EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CeEEEEeeccceeeEEEecCCC-CceE-EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence 9999999999998888776532 2222 455443 4579999999999999954 56788
Q ss_pred eccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE-eCC-EEEEEECCCeEEEEE
Q 009274 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQG-KLFVGCADRTVKVYY 535 (538)
Q Consensus 460 ~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~sg~~dg~v~vw~ 535 (538)
+.+|...|.++.+ ++++|++|+.||.|++||+.+++....+.. +...+.++.+ +++ .|++|+.||+|++||
T Consensus 243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-----HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-----CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 8999999999886 889999999999999999998876655442 3335666655 444 589999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-33 Score=273.29 Aligned_cols=280 Identities=19% Similarity=0.297 Sum_probs=221.0
Q ss_pred EEEeecCCCcE-EEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 245 FKDLQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 245 i~~l~~h~~~V-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+|+||.+.| +|+++++++|+||+.||+|+|||+.+++.+.++++|.+.|.+++|+|+ .++++|+.|++|++|++.
T Consensus 5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETT
T ss_pred cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC--CEEEEEeccccccccccc
Confidence 45699998875 789999999999999999999999999999999999999999999874 478999999999999987
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeE-----------------------EecC
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-----------------------TMSG 380 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-----------------------~~~~ 380 (538)
...... .................++++.+++++.|+.|++||+++..... ....
T Consensus 83 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 83 KGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp TTEEEE---EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccccc---ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 643222 22222222333344566778899999999999999997654322 2234
Q ss_pred CCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--ccee
Q 009274 381 HKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMK 458 (538)
Q Consensus 381 h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~ 458 (538)
|...+.+...++++++++..|+.|++||+++++.+.....+... .....+++++..+++++.|+.|++||.. ..+.
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 237 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR--IYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred ccccccccccccceeeeecccceeeeeecccccceeeeeccccc--cccccccccceeeecccccceEEeeecccccccc
Confidence 55666666667889999999999999999999988877765433 3336899999999999999999999954 5778
Q ss_pred eeccccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceE-EEEEeCCEEEEEECCCeEEEEEcC
Q 009274 459 SMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVIT-ALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 459 ~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
.+.+|...|.++.+++++|++|+.||.|++||+++.......... .... ..+.+++.+++++.||.|++||+.
T Consensus 238 ~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~g~d~~i~vwd~~ 311 (355)
T d1nexb2 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT------NLSAITTFYVSDNILVSGSENQFNIYNLR 311 (355)
T ss_dssp EECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECT------TCCCCCEEEECSSEEEEEETTEEEEEETT
T ss_pred ccccccccccccccccceeeeeecccccccccccccceecccccC------CceEEEEEcCCCCEEEEEeCCEEEEEECC
Confidence 889999999999999999999999999999999987654433221 1222 234557778887789999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.3e-33 Score=265.09 Aligned_cols=282 Identities=16% Similarity=0.155 Sum_probs=214.0
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
..+.++||.++|++++|+ +++|+||+.||+|++||+++++.+..+. .|...|.+++|+|++. +++++.|+.+++|
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEE
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--eecccceeeEEEe
Confidence 457799999999999999 8999999999999999999999988874 6899999999998653 4667789999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (538)
+................. ......+++++++.+++++ ++.+++|+.. +..... ....+.+++|+ ++++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLS--SQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp CSSSSSSCTTSCCEEECS--SCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred ccCCcccccccccccccc--ccccccccccccccccccc-cccccccccc--cccccc--cccccccccccccccccccc
Confidence 987543322221111111 1122457788888776665 5789999953 333332 34457889998 5599999
Q ss_pred ecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc-----ceeeeccccceEEEEEe-
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-----FMKSMQTHKGSVFAVFL- 472 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~h~~~v~~~~~- 472 (538)
+.|+.|++||+++++........+...+.. ++++|+++++++++.|+.|++||..+ ....+.+|...|.++++
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 233 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITS-VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEE-EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999887655444344455554 69999999999999999999999543 23456779999999987
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCEEEEEECCCeEEEEEcC
Q 009274 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 -~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~v~vw~~~ 537 (538)
++++|++|+.||.|++||+++........... ++...+.+++++ ++.|++|+.||.|++||+.
T Consensus 234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA--HAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEETTS--STTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ccccceEEEcCCCEEEEEECCCCCcceEEEecC--CCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 89999999999999999998765433322221 134456666665 6679999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.4e-33 Score=267.74 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=223.3
Q ss_pred cCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 009274 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (538)
Q Consensus 250 ~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (538)
.+.+.+.+++++ |+.|+.++ ++.|.+||+++++..+.+.+|...|++++|+|+ +.++++|+.||+|++||+.+...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeecccc
Confidence 344556677887 88888875 667999999999999999999999999999995 56889999999999999987654
Q ss_pred CcceeeecccCCceeeeEEEEeecCCEEEEeeC--CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEEecCC
Q 009274 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDG 402 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg 402 (538)
.... ....+.. ....++++++++++++++. +..+++|++++++....+.+|...|++++|+ ++ .+++|+.|+
T Consensus 93 ~~~~-~~~~~~~--~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 93 ILKT-TIPVFSG--PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp CEEE-EEECSSS--CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred cccc-ccccccC--ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 3221 1222222 2234578899999998876 4569999999999999999999999999998 33 688999999
Q ss_pred cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceee-------eccccceEEEEEe-
Q 009274 403 TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKS-------MQTHKGSVFAVFL- 472 (538)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~-------~~~h~~~v~~~~~- 472 (538)
.|++||+++++....+..+. ..+.. +.++|+++++++++.|+.|++||... .... ..+|...|.+++|
T Consensus 170 ~i~i~d~~~~~~~~~~~~~~-~~i~~-v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 247 (311)
T d1nr0a1 170 TVAIFEGPPFKFKSTFGEHT-KFVHS-VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247 (311)
T ss_dssp CEEEEETTTBEEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred cccccccccccccccccccc-ccccc-cccCccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 99999999999888887653 34444 68999999999999999999999543 2222 3468899999987
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 473 -~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
++++|++|+.||.|+|||++++++.......... ......+.+.++.+++++.||.|++||..
T Consensus 248 ~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~--~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI--EDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG--GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc--cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 8999999999999999999999877665443321 22344556667789999999999999963
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-33 Score=269.69 Aligned_cols=245 Identities=19% Similarity=0.309 Sum_probs=205.1
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
.++|+||.++|++++|+ +++|+||+.||+|+|||+.+++.+..+..|...|.+++|+|+ +.++++|+.|+.+++|+.
T Consensus 48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT-SSEEEEEETTCCEEEEES
T ss_pred eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc-ceeeeeecccceeecccc
Confidence 46799999999999998 899999999999999999999999999999999999999985 558899999999999997
Q ss_pred cCCCCCcceee-ecccCCc---------------------------------------eeeeEEEEeecCCEEEEeeCCC
Q 009274 323 SFPLGHEPLKK-WNEEKDW---------------------------------------RYSGIHALTTSGRYLYTGSGDR 362 (538)
Q Consensus 323 ~~~~~~~~~~~-~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~sg~~dg 362 (538)
........... ...+... .........+.+.++++|+.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 206 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence 65433221111 1100000 0011224455677999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (538)
.|++||+++++++..+.+|.+.|++++|+ +++|++|+.|+.|++||++.......+...........++++|++++|+
T Consensus 207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 286 (340)
T d1tbga_ 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEE
Confidence 99999999999999999999999999999 5599999999999999999998887775544444445579999999999
Q ss_pred EEeCCCcEEEEeC--CcceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 441 VSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 441 ~~~~dg~i~iwd~--~~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
+|+.||.|++||. .+.+..+.+|.++|.+++| ++++|++|+.||.|++||
T Consensus 287 ~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999995 4678889999999999987 889999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-33 Score=266.85 Aligned_cols=286 Identities=24% Similarity=0.351 Sum_probs=222.5
Q ss_pred EEEeecCCCcE-EEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 245 FKDLQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 245 i~~l~~h~~~V-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
...|+||.+.| +|++++|++|+||+.||+|+|||+.+++++.++.+|.+.|.+++|++ .++++|+.|+.+++|+..
T Consensus 9 ~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~ 85 (342)
T d2ovrb2 9 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAE 85 (342)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETT
T ss_pred CEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceecccccccccc
Confidence 35689999987 56778899999999999999999999999999999999999999976 388999999999999976
Q ss_pred CCCCCccee--------------------------eecccCCc-------eeeeEEEEeecCCEEEEeeCCCcEEEEECC
Q 009274 324 FPLGHEPLK--------------------------KWNEEKDW-------RYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (538)
Q Consensus 324 ~~~~~~~~~--------------------------~~~~~~~~-------~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~ 370 (538)
......... .+...... ..............+++++.|+.|++||.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 165 (342)
T d2ovrb2 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165 (342)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence 532111000 00000000 000112344556688999999999999999
Q ss_pred CCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEE
Q 009274 371 DGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (538)
Q Consensus 371 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 450 (538)
..+.+..+.+|...+..+.+++.++++++.||.|++||++.++.+..+..+.. .+ .+++++++++++++.||.|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~-~v---~~~~~~~~~l~s~s~d~~i~i 241 (342)
T d2ovrb2 166 TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LT---SGMELKDNILVSGNADSTVKI 241 (342)
T ss_dssp GTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CE---EEEEEETTEEEEEETTSCEEE
T ss_pred cceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccc-ce---eEEecCCCEEEEEcCCCEEEE
Confidence 99999999999999999988899999999999999999999999888876543 33 244556789999999999999
Q ss_pred EeCCc--ceeeec---cccceEEEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CCE-EE
Q 009274 451 WRNDK--FMKSMQ---THKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGK-LF 523 (538)
Q Consensus 451 wd~~~--~~~~~~---~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-l~ 523 (538)
||... ....+. .|...+.++.++++++++|+.||.|++||+++++............+...+..+.++ ++. ++
T Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la 321 (342)
T d2ovrb2 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321 (342)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred EecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence 99643 333443 467888999999999999999999999999998876655443333345567776665 554 56
Q ss_pred EEECCCe----EEEEEcC
Q 009274 524 VGCADRT----VKVYYYG 537 (538)
Q Consensus 524 sg~~dg~----v~vw~~~ 537 (538)
+|+.||+ |++|||.
T Consensus 322 ~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 322 VGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EECSSSSSCCEEEEEECC
T ss_pred EEeCCCCCeeEEEEEeCC
Confidence 7888885 9999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.8e-33 Score=271.78 Aligned_cols=280 Identities=21% Similarity=0.291 Sum_probs=216.2
Q ss_pred EEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe------------------cCCcCeEEEEEecCC
Q 009274 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK------------------GHDHKVMAVVYVDED 304 (538)
Q Consensus 245 i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------~h~~~v~~l~~~~~~ 304 (538)
+....+|.+.|+|++|+ |++|++|+ |++|+|||+.+++.+..+. .|...|.+++|+|+
T Consensus 55 l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~- 132 (388)
T d1erja_ 55 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD- 132 (388)
T ss_dssp EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-
T ss_pred eEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-
Confidence 34445799999999999 88999987 8999999999988877664 35667999999985
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCC
Q 009274 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA 384 (538)
Q Consensus 305 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 384 (538)
+.++++|+.||.|++||...++.. .....+.. ......+++++..+++|+.++.+++||.++.........+..
T Consensus 133 ~~~l~s~~~dg~v~i~~~~~~~~~---~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~- 206 (388)
T d1erja_ 133 GKFLATGAEDRLIRIWDIENRKIV---MILQGHEQ--DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG- 206 (388)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEE---EEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-
T ss_pred CCcceecccccccccccccccccc---cccccccc--cccccccccccccccccccceeeeeeeccccccccccccccc-
Confidence 568899999999999998765432 22222222 223456778888999999999999999999888877765554
Q ss_pred eEEEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecC------CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 009274 385 VSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEED------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (538)
Q Consensus 385 v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 455 (538)
..++.+. +.+|++++.|+.|++||.+++.....+... +...+.. +.++|++++|++++.||.|++||...
T Consensus 207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~d~~i~iwd~~~ 285 (388)
T d1erja_ 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS-VVFTRDGQSVVSGSLDRSVKLWNLQN 285 (388)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE-EEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEE-EEECCCCCEEEEEECCCcEEEEeccC
Confidence 4555555 469999999999999999999887766432 2334444 79999999999999999999999542
Q ss_pred --------------ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEE--
Q 009274 456 --------------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-- 517 (538)
Q Consensus 456 --------------~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 517 (538)
.......|...|.++++ ++++|++|+.||.|++||+.+++....+.. +...+..+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-----H~~~V~~~~~~~ 360 (388)
T d1erja_ 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----HRNSVISVAVAN 360 (388)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECS
T ss_pred CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC-----CCCCEEEEEEec
Confidence 23445668889999887 899999999999999999999887665543 2234444433
Q ss_pred -----eCC-EEEEEECCCeEEEEEcCC
Q 009274 518 -----WQG-KLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 518 -----~~~-~l~sg~~dg~v~vw~~~~ 538 (538)
+++ .|++|+.||+|+||++++
T Consensus 361 ~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 361 GSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcccCCCCCEEEEEeCCCEEEEEeeee
Confidence 244 478899999999999864
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.4e-32 Score=258.31 Aligned_cols=238 Identities=17% Similarity=0.204 Sum_probs=196.1
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceE--EEEecCCcCeEEEEEecCCCCEEEEEcC--CCcEEEEE
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV--HTFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWS 321 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd 321 (538)
+.+|.+.|++++|+ +++|++|+.||+|++||+.+++.. ..+..|..+|.+++|+|++. ++++++. +..+++|+
T Consensus 54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~ 132 (311)
T d1nr0a1 54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFL 132 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEE
T ss_pred EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc-ccccccccccccccccc
Confidence 67899999999998 999999999999999999887643 56788999999999999655 5555554 56799999
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (538)
+++.+....+.. +.. ....++++|+++ .+++|+.|+.|++||+++++....+..|..+|+++.|+ +++++++
T Consensus 133 ~~~~~~~~~l~~---h~~--~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 133 FDTGTSNGNLTG---QAR--AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp TTTCCBCBCCCC---CSS--CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccc---ccc--ccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccc
Confidence 987765444332 222 123456888887 58899999999999999999999999999999999998 5699999
Q ss_pred ecCCcEEEEECCCCceeEEEecC------CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeecccc---ceE
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEED------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHK---GSV 467 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~---~~v 467 (538)
+.|+.|++||.++++....+... |...+.. ++|+|++++|++|+.||.|++||.. ++++++..|. ..+
T Consensus 208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~ 286 (311)
T d1nr0a1 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG-LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 286 (311)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred cccccccccccccccccccccccccccccccccccc-cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceE
Confidence 99999999999999888776532 2334444 7999999999999999999999955 4566676553 466
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEecC
Q 009274 468 FAVFLEGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 468 ~~~~~~~~~l~sgs~dg~v~iwd~~ 492 (538)
.++.|+++.|++++.||.|++||++
T Consensus 287 ~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 287 LGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEecCCEEEEEECCCEEEEEeCC
Confidence 7888899999999999999999974
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-32 Score=257.43 Aligned_cols=273 Identities=19% Similarity=0.339 Sum_probs=220.2
Q ss_pred EEEEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
++..+.+|...|+|+++++++|+||+.||+|+|||+++++++.++++|.+.|.+++| ++.+|++|+.|+.|++|++.
T Consensus 7 ~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESS
T ss_pred EEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeecccccccccccccc
Confidence 345567889999999999999999999999999999999999999999999999987 45689999999999999998
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce---eEEecCCCCCeEEEEEeCCEEEEEec
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL---SCTMSGHKSAVSTLAVCNGVLYSGSR 400 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~l~s~s~ 400 (538)
.+........ . .............++++..++.+.+||..+... ...+..|...+.++.+....+++++.
T Consensus 84 ~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~ 156 (293)
T d1p22a2 84 TGEMLNTLIH---H----CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG 156 (293)
T ss_dssp SCCEEEEECC---C----CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred cccccccccc---c----ccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccC
Confidence 6543222221 1 112335566677899999999999999987653 44557789999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEeCCCEEE
Q 009274 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFLEGKWLF 478 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~~~~~l~ 478 (538)
|+.+++||+++++.+..+..+... + ..+++++..+++++.||.|++||.+ +.+....+|...+..+.+++.+|+
T Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~-v---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 232 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRTLNGHKRG-I---ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232 (293)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSC-E---EEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEE
T ss_pred CCceeeecCCCCcEEEEEcccccc-c---ccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEE
Confidence 999999999999999888765432 2 3445567899999999999999955 467778889999999999999999
Q ss_pred EEeCCCeEEEEecCCCe---------eEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEE
Q 009274 479 TGGWDKTVSVQELAGDE---------FEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYY 535 (538)
Q Consensus 479 sgs~dg~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~ 535 (538)
+|+.||.|++||+.... ...... .|...+..+.+++..|++|+.||+|++||
T Consensus 233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-----EHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-----CCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred EEcCCCEEEEEECCCCccccccCCceeeEEec-----CCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 99999999999975322 111111 13344566677777899999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-30 Score=252.68 Aligned_cols=299 Identities=21% Similarity=0.351 Sum_probs=225.9
Q ss_pred cCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCe--E
Q 009274 229 GGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV--M 296 (538)
Q Consensus 229 ~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v--~ 296 (538)
.+++.++++..++.+++|+ +++|.++|++++|+ +++|++|+.|++|++|+....+.......+.... .
T Consensus 21 ~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~ 100 (355)
T d1nexb2 21 FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100 (355)
T ss_dssp EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccccccc
Confidence 4567899999999999997 57899999999999 8899999999999999999988877766544433 3
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec--------cc--------CCceeeeEEEEeecCCEEEEeeC
Q 009274 297 AVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN--------EE--------KDWRYSGIHALTTSGRYLYTGSG 360 (538)
Q Consensus 297 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~l~sg~~ 360 (538)
...+.+ +..++++++.|+.|++||+.+........... .. ...+...+....++++.++++..
T Consensus 101 ~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (355)
T d1nexb2 101 DIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179 (355)
T ss_dssp EEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred cccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc
Confidence 444444 55678999999999999998654322111100 00 00112235577888999999999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 009274 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (538)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (538)
|+.|++||+++++.+....++...+.++.++ ++++++++.|+.|++||++++..+..+..+.. .+.. +++ ++++
T Consensus 180 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~-~~~--~~~~ 255 (355)
T d1nexb2 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGL-LRL--SDKF 255 (355)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CCCE-EEE--CSSE
T ss_pred cceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccc-cccc-ccc--ccce
Confidence 9999999999999999999999999999999 66999999999999999999999998887643 3332 455 4679
Q ss_pred EEEEeCCCcEEEEeCCcceeeeccccceEEEE---EeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEE
Q 009274 439 LVVSHESGSIKVWRNDKFMKSMQTHKGSVFAV---FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL 515 (538)
Q Consensus 439 l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~~---~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (538)
|++|+.||.|++||.++....+..|...+.++ .++++++++|+ ||.|++||++++++...... .+...+.++
T Consensus 256 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~----~~~~~V~~v 330 (355)
T d1nexb2 256 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL----KDADQIWSV 330 (355)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTT----TTCSEEEEE
T ss_pred eeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEec----CCCCCEEEE
Confidence 99999999999999988888888887766554 34777776665 89999999999876432211 134456666
Q ss_pred EEeCCE-EEEEECCCeEE--EEEcC
Q 009274 516 LYWQGK-LFVGCADRTVK--VYYYG 537 (538)
Q Consensus 516 ~~~~~~-l~sg~~dg~v~--vw~~~ 537 (538)
.++++. +++++.||.++ +|||+
T Consensus 331 ~~~~~~~~~~~s~dg~~~l~~~dfs 355 (355)
T d1nexb2 331 NFKGKTLVAAVEKDGQSFLEILDFS 355 (355)
T ss_dssp EEETTEEEEEEESSSCEEEEEEECC
T ss_pred EEcCCeEEEEEECCCcEEEEEEeCC
Confidence 666555 55688999855 45553
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-31 Score=253.53 Aligned_cols=260 Identities=18% Similarity=0.301 Sum_probs=214.4
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe--------------ecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCC--
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL--------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD-- 281 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l--------------~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~-- 281 (538)
..|.++.++++++.++++. ++.+++|++ .+|.+.|++++|+ +++|++|+.||+|++||+..
T Consensus 52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~ 130 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc
Confidence 4578899999999999986 789999984 3688999999998 89999999999999999874
Q ss_pred CceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC
Q 009274 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361 (538)
Q Consensus 282 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 361 (538)
++....+..|...+.+++|+|+ +.++++++.|+.|++|++.+.+.. .....+.. .....+++++++.+++|+.|
T Consensus 131 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~~---~~~~~~~~--~v~~l~~s~~~~~~~~~~~d 204 (337)
T d1gxra_ 131 PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLV---RQFQGHTD--GASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE---EEECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccc---cccccccc--cccccccccccccccccccc
Confidence 4566778899999999999884 567899999999999999865422 22222222 22345778899999999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE
Q 009274 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439 (538)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 439 (538)
+.+++||+++++.+..+. |...|.+++|+ ++++++++.|+.+++||+++++...... +...+.. ++|+|++++|
T Consensus 205 ~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~-v~~s~~g~~l 280 (337)
T d1gxra_ 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLS-LKFAYCGKWF 280 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC--CSSCEEE-EEECTTSSEE
T ss_pred ccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccc--cccccce-EEECCCCCEE
Confidence 999999999999887775 88999999998 5699999999999999999888754432 2344444 6999999999
Q ss_pred EEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 440 VVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 440 ~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
++++.||.|++||... .+.. ..|...|.++++ ++++|++|+.||+|+|||+
T Consensus 281 ~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 281 VSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCCEEEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9999999999999653 3433 347789999887 8899999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.4e-31 Score=256.36 Aligned_cols=234 Identities=15% Similarity=0.153 Sum_probs=182.3
Q ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
+.++|+|++|+ +++||+|+.||.|+|||+++++ .+..+++|.++|.+++|+|++ .+|++|+.|++|++||+.+..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecccc
Confidence 35889999999 8999999999999999998775 667889999999999999954 588999999999999998653
Q ss_pred CCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCce----eEEecCCCCCeEEEEEe--CCEEEEEec
Q 009274 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL----SCTMSGHKSAVSTLAVC--NGVLYSGSR 400 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~ 400 (538)
...... ...+. .....++++|+++.+++|+.|++|++|++..... ......|...|.+++|+ +.+|++|+.
T Consensus 85 ~~~~~~-~~~~~--~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 85 WKPTLV-ILRIN--RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEEEE-CCCCS--SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred cccccc-ccccc--ccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 322221 11111 2233567889999999999999999999876543 33446789999999999 459999999
Q ss_pred CCcEEEEECCCCc------------------eeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccceeee
Q 009274 401 DGTIRLWSLSDHS------------------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSM 460 (538)
Q Consensus 401 dg~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~ 460 (538)
|+++++||..... .+..... +...+.. ++|+|++++|++++.|+.|++||. ...+..+
T Consensus 162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 239 (371)
T d1k8kc_ 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHG-VCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239 (371)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEE-EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CcEEEEEeeccCccccccccccccccccceeeeeeccC-ccCcEEE-EEeecccccccccccCCcceEEeeecccceeee
Confidence 9999999986543 2222222 2333444 799999999999999999999995 4567788
Q ss_pred ccccceEEEEEe--CCCEEEEEeCCCeEEEEec
Q 009274 461 QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 461 ~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~ 491 (538)
..|..+|.++.| ++++|++| .|+.+++|+.
T Consensus 240 ~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~ 271 (371)
T d1k8kc_ 240 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 271 (371)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred ecccccceeeeecCCCCEEEEE-cCCceEEEEe
Confidence 899999999887 77666654 5777666654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-30 Score=255.61 Aligned_cols=265 Identities=18% Similarity=0.320 Sum_probs=211.6
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEee---------------------------cCCCcEEEEEEc--CCEEEEEeC
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQ---------------------------GHRDCVTGLAVG--GGFLFSSSF 270 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~---------------------------~h~~~V~~l~~~--~~~l~s~s~ 270 (538)
..|.++.+++++..++++. ++.+++|++. +|...|++++|+ +++|++|+.
T Consensus 63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~ 141 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc
Confidence 4588999999999888875 8899999752 477889999999 899999999
Q ss_pred CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee
Q 009274 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT 350 (538)
Q Consensus 271 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (538)
||.|++||..+++.+..+.+|...|.++.++++ ...+++++.++.+++||..+..... ...... ....+.....
T Consensus 142 dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~--~~~~~~~~~~ 215 (388)
T d1erja_ 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSL---TLSIED--GVTTVAVSPG 215 (388)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE---EEECSS--CEEEEEECST
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccceeeeeeecccccccc---cccccc--ccccccccCC
Confidence 999999999999999999999999999999884 5577899999999999987543222 111111 2222334445
Q ss_pred cCCEEEEeeCCCcEEEEECCCCceeEEe-------cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEE---
Q 009274 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTM-------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVL--- 418 (538)
Q Consensus 351 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~--- 418 (538)
++++|++|+.|+.|++||.+++.....+ .+|...|.+++|+ +.+|++++.|+.|++||++++......
T Consensus 216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence 7889999999999999999998876654 4688999999999 559999999999999999876533221
Q ss_pred --------ecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--------CCCEEEEE
Q 009274 419 --------EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--------EGKWLFTG 480 (538)
Q Consensus 419 --------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--------~~~~l~sg 480 (538)
...+...+.. ++++|++++|++|+.||.|++||.. +++..+++|.+.|.++.+ ++++|+||
T Consensus 296 ~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 296 NSGTCEVTYIGHKDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp ---CEEEEEECCSSCEEE-EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred cccceeeecccccceEEE-EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence 1122334444 6999999999999999999999954 678889999999999864 67899999
Q ss_pred eCCCeEEEEecC
Q 009274 481 GWDKTVSVQELA 492 (538)
Q Consensus 481 s~dg~v~iwd~~ 492 (538)
+.||+|+|||++
T Consensus 375 s~Dg~I~iW~~~ 386 (388)
T d1erja_ 375 SGDCKARIWKYK 386 (388)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCEEEEEeee
Confidence 999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=6.5e-30 Score=242.69 Aligned_cols=263 Identities=22% Similarity=0.405 Sum_probs=229.1
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 288 (538)
..|.++.+++++..+++++.|+.+++|+ +.+|.+.|++++++ +.++++++.++.+.+|+....+....+
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccc
Confidence 3588899999999999999999999997 56899999999999 899999999999999999999988889
Q ss_pred ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEE
Q 009274 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (538)
Q Consensus 289 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd 368 (538)
..|...+.++.|++++ ..+++++.|+.+++||+.++.....+ ..+. ......+++++++++++++.|+.|++|+
T Consensus 98 ~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~l~~~~~d~~v~~~~ 171 (317)
T d1vyhc1 98 HGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF---TGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWV 171 (317)
T ss_dssp CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE---ECCS--SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEE---ccCC--CcceeeecccCCCEEEEEeCCCeEEEEe
Confidence 9999999999999854 56789999999999999876543332 2222 2233557888999999999999999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEe----------------------CCEEEEEecCCcEEEEECCCCceeEEEecCCCCce
Q 009274 369 LLDGTLSCTMSGHKSAVSTLAVC----------------------NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426 (538)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~----------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 426 (538)
..+++....+.+|...+.++.++ +.++++++.|+.|++||+++++++..+..+. ..+
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~v 250 (317)
T d1vyhc1 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWV 250 (317)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCE
T ss_pred eccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC-CCE
Confidence 99999999999999999999885 1368999999999999999999999988764 344
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEe
Q 009274 427 SSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd 490 (538)
.. ++++|++++|++|+.||.|++||.. +++..+.+|...|++++| ++++|++|+.||+|++||
T Consensus 251 ~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 251 RG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EE-EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EE-EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 44 6999999999999999999999954 578889999999999987 889999999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=9e-30 Score=244.52 Aligned_cols=283 Identities=15% Similarity=0.155 Sum_probs=209.6
Q ss_pred cEEEEEEc--CCEEEEEeCCC-cEEEEeCCCC--ceEEEEecCC-cCeEEEEEecC-CCCEEEEEcCCCcEEEEEccCCC
Q 009274 254 CVTGLAVG--GGFLFSSSFDK-SIHVWSLKDF--SHVHTFKGHD-HKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 254 ~V~~l~~~--~~~l~s~s~dg-~i~iwd~~~~--~~~~~~~~h~-~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
.+++++|+ ++.|+.++.+. .|+.||.... .....+.+|. ..|++++|+|. ++.++++|+.||+|++||+....
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 45788898 88888886554 3566765433 4467778874 68999999984 56799999999999999998655
Q ss_pred CCcceeeeccc---CCceeeeEEEEeecCCEEEEeeC--CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEE
Q 009274 327 GHEPLKKWNEE---KDWRYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSG 398 (538)
Q Consensus 327 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~ 398 (538)
........... .........+++++++++++++. ++.+++|+..+++.+..+.+|...|++++|+ ++ +++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence 44333321110 00011234577888998877654 6789999999999999999999999999998 22 68899
Q ss_pred ecCCcEEEEECCCCceeEEEecCCC-CceEEEEEEcCC-CCEEEEEeCCCcEEEEeCC--cceeeeccccceE----EEE
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSS-GAVSSVLSLTAV-QHTLVVSHESGSIKVWRND--KFMKSMQTHKGSV----FAV 470 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v----~~~ 470 (538)
+.|+.+++||....+.......+.. ......++|+|+ +.++++++.||.|++||.+ +.+..+.+|...+ .++
T Consensus 179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 258 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258 (325)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeee
Confidence 9999999999998887766654321 222344789996 6899999999999999954 5677888777654 555
Q ss_pred Ee-CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEc
Q 009274 471 FL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 471 ~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~ 536 (538)
.+ ++++|++++.|+.|+|||+++++..................+.+.+++.+++|+.||.|++||+
T Consensus 259 ~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 54 8999999999999999999998876655433221111222333344778999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=3.1e-29 Score=245.43 Aligned_cols=269 Identities=14% Similarity=0.082 Sum_probs=207.9
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEE-----------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceE--
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV-- 285 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~-- 285 (538)
+|.+..+++++..++++..++.+.+|+ +++|.++|++++|+ +++|++|+.|++|++||+.++...
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~ 88 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 88 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence 467788888888888888888888876 46899999999998 899999999999999999877654
Q ss_pred EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEE
Q 009274 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (538)
Q Consensus 286 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 365 (538)
..+.+|...|.+++|+|+ +..+++++.|+++++|++................. ......+++|++++|++|+.|++|+
T Consensus 89 ~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 89 LVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-STVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccc-cccceeecccCcceeeeeecccccccccccccccc-cccccccccccccceeccccCcEEE
Confidence 445678999999999995 45789999999999999987654433333222222 1223457889999999999999999
Q ss_pred EEECCCC------------------ceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCc
Q 009274 366 AWSLLDG------------------TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA 425 (538)
Q Consensus 366 iwd~~~~------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 425 (538)
+||.... +......+|...|.+++|+ +++|++++.|+.|++||+.+++.+..+..+.. .
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~ 245 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-P 245 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-C
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc-c
Confidence 9998643 3455667899999999999 56999999999999999999999988887643 3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCcEEEEe--CCcce-----------------------------------------eeecc
Q 009274 426 VSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFM-----------------------------------------KSMQT 462 (538)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~-----------------------------------------~~~~~ 462 (538)
+.+ ++|+|++.++++| .|+.+++|+ ..... .....
T Consensus 246 v~s-~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
T d1k8kc_ 246 LLA-VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323 (371)
T ss_dssp EEE-EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred cee-eeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence 444 6899999877765 477777664 21100 00013
Q ss_pred ccceEEEEEe--C----CCEEEEEeCCCeEEEEecCCC
Q 009274 463 HKGSVFAVFL--E----GKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 463 h~~~v~~~~~--~----~~~l~sgs~dg~v~iwd~~~~ 494 (538)
|.+.|.++++ . ...|+|+|.||.|++||+++.
T Consensus 324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 8888988876 1 246999999999999998653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-29 Score=237.77 Aligned_cols=266 Identities=17% Similarity=0.173 Sum_probs=203.1
Q ss_pred EEEEEeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEc
Q 009274 243 VKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (538)
Q Consensus 243 ~~i~~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 322 (538)
..+..|+||.++|++++|+. |+||+.||+|++||+.++ .++|...|.++.++++ . .+++++.|+++++|++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~-~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-Q-EYSSISWDDTLKVNGI 74 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-T-CCEEEETTTEEEETTE
T ss_pred ceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-C-eEEEEeeccccccccc
Confidence 46788999999999999986 999999999999998754 3689999999999763 3 4689999999999997
Q ss_pred cCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCC
Q 009274 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDG 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg 402 (538)
....... .....++.+++..+++ +.++.+.+|+..+++.+..+.. ...+.++..+++.+++++.|+
T Consensus 75 ~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 75 TKHEFGS------------QPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEG 140 (287)
T ss_dssp EEEECSS------------CEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETTT
T ss_pred ccccccc------------ceeeeeeccCCceEEE-eecccceeeeccceeeeeeccc-cceeeeeeccCcceeeecccc
Confidence 6432111 1123455666655555 4567799999999998888764 456677777777777777765
Q ss_pred -cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc---eeeeccccceEEEEEe------
Q 009274 403 -TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF---MKSMQTHKGSVFAVFL------ 472 (538)
Q Consensus 403 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~h~~~v~~~~~------ 472 (538)
.+++|++...+....+...+...+.. ++|+|++.+|++|+.||.|++||..+. ...+.+|...|.+++|
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSY-ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred ceeeeeeccccceeeeeeeccCCceeE-EEeccCccccccccccccccceeecccccccccccccccccceeeecccccc
Confidence 79999998777666666555555544 799999999999999999999997653 2346789999999875
Q ss_pred ------CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEE-EEeCCEEEEEECCCeEEEEEc
Q 009274 473 ------EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQGKLFVGCADRTVKVYYY 536 (538)
Q Consensus 473 ------~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~v~vw~~ 536 (538)
++.+|++|+.|++|++||++.......... . +...+..+ +.+++.|++++.||.|++|++
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~-~---h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-A---HKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-S---STTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC-C---CCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 467899999999999999976432222111 1 33345555 456888999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.5e-29 Score=232.27 Aligned_cols=256 Identities=24% Similarity=0.408 Sum_probs=214.3
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCC
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD 292 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 292 (538)
|.+. +.+++.+++++.|+.+++|+ +.+|.++|++++|++++|++|+.|+.|++|++..+........+.
T Consensus 18 V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~ 95 (293)
T d1p22a2 18 VYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHC 95 (293)
T ss_dssp EEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred EEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccc
Confidence 4443 34678899999999999997 468999999999999999999999999999999998888777665
Q ss_pred cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC
Q 009274 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG 372 (538)
Q Consensus 293 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 372 (538)
....... + ....++++..++.+.+|+...............+. ..+....+....+++++.|+.|++||.+++
T Consensus 96 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~ 168 (293)
T d1p22a2 96 EAVLHLR--F-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR----AAVNVVDFDDKYIVSASGDRTIKVWNTSTC 168 (293)
T ss_dssp SCEEEEE--C-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS----SCEEEEEEETTEEEEEETTSEEEEEETTTC
T ss_pred ccccccc--c-cccceeecccccceeEeeccccccccccccccccc----cccccceecccccccccCCCceeeecCCCC
Confidence 5444432 3 44577899999999999998766554444443333 235567777889999999999999999999
Q ss_pred ceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009274 373 TLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (538)
Q Consensus 373 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 452 (538)
+.+..+.++...+..+.+++..+++++.|+.|++||+++.+.+.....+.. .+ ..+++++.+|++|+.||.|++||
T Consensus 169 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v---~~~~~~~~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 169 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LV---RCIRFDNKRIVSGAYDGKIKVWD 244 (293)
T ss_dssp CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CE---EEEECCSSEEEEEETTSCEEEEE
T ss_pred cEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccce-ee---eeccccceEEEEEcCCCEEEEEE
Confidence 999999999999999999999999999999999999999998888776533 22 36778899999999999999998
Q ss_pred CC-----------cceeeeccccceEEEEEeCCCEEEEEeCCCeEEEEe
Q 009274 453 ND-----------KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQE 490 (538)
Q Consensus 453 ~~-----------~~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd 490 (538)
.. ..+..+.+|.+.|+++++++++|+|||.||+|++||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred CCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 32 246778899999999999999999999999999998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-28 Score=235.48 Aligned_cols=284 Identities=14% Similarity=0.098 Sum_probs=204.1
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEE---EEecCCcCeEEEEEecCCCCEEEEEcCCCcEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH---TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 318 (538)
.+.-.++|++.|++|+|+ +++|++|+.||+|+|||++++.... ...+|..+|.+++|+|+++.++++|+.||.|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 355678999999999999 8999999999999999997655432 33469999999999998888999999999999
Q ss_pred EEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeE----EecCCC----CCeEEEEE
Q 009274 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC----TMSGHK----SAVSTLAV 390 (538)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~h~----~~v~~l~~ 390 (538)
+|++............. ..........+++..+++++.|+.+++||++++.... ....+. .....+..
T Consensus 83 ~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 83 KVDLIGSPSFQALTNNE----ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSSEEECBSCC----CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred eeecccccccccccccc----cccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence 99998654332222111 1222344566778899999999999999987543322 222222 12223333
Q ss_pred eCCEEEEEecCCcEEEEECCCCceeEEE--ecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc------------
Q 009274 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVL--EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF------------ 456 (538)
Q Consensus 391 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------ 456 (538)
.++.+++++.|+.|++||++..+..... .............++.++..+++++.||.+.+|+....
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 4779999999999999999877643322 22223334444556677889999999999999974321
Q ss_pred -----eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCC
Q 009274 457 -----MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADR 529 (538)
Q Consensus 457 -----~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 529 (538)
......|...+.+++| ++++|+||+.||.|++||+++++........ +...+..+.+.+..+++|+.|+
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~----~~~~~~~~s~~~~~l~~a~sdd 314 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF----NEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC----SSSEEEEEEECSSEEEEEEECT
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC----CCCEEEEEEeCCCEEEEEEcCC
Confidence 1112346677888877 8899999999999999999998866544322 2333455555566788888888
Q ss_pred eEEEEE
Q 009274 530 TVKVYY 535 (538)
Q Consensus 530 ~v~vw~ 535 (538)
.+++|.
T Consensus 315 ~~~~~~ 320 (342)
T d1yfqa_ 315 TFKTNA 320 (342)
T ss_dssp HHHHCS
T ss_pred cEEEee
Confidence 776664
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-27 Score=227.80 Aligned_cols=259 Identities=22% Similarity=0.357 Sum_probs=199.0
Q ss_pred eccCcceeEEeecCCeEEEEE---------eecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEE
Q 009274 227 AAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA 297 (538)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~i~~---------l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 297 (538)
++.+++.+++++.|+.+++|+ +.+|.+.|++++|++++|++|+.|+++++|+............+...+..
T Consensus 23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
T d2ovrb2 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeEee
Confidence 344577899999999999997 46899999999999999999999999999998876655544444433333
Q ss_pred EEEec-------------------------------------CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCc
Q 009274 298 VVYVD-------------------------------------EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 298 l~~~~-------------------------------------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (538)
....+ .....+++++.|+.|++||...... +.....+
T Consensus 103 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~--- 176 (342)
T d2ovrb2 103 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC---LHTLQGH--- 176 (342)
T ss_dssp EEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE---EEEECCC---
T ss_pred eecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccccee---eEEEcCc---
Confidence 22211 1222455666677777777654322 1222221
Q ss_pred eeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEec
Q 009274 341 RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 420 (538)
...+..+.+++.++++|+.||.|++||+++++++..+.+|...+.+++++++++++++.|+.|++||+...+....+..
T Consensus 177 -~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 255 (342)
T d2ovrb2 177 -TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255 (342)
T ss_dssp -SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred -ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccc
Confidence 2235577889999999999999999999999999999999999999999999999999999999999999988887765
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--cceeee-----ccccceEEEEEe--CCCEEEEEeCCCe----EE
Q 009274 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSM-----QTHKGSVFAVFL--EGKWLFTGGWDKT----VS 487 (538)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~-----~~h~~~v~~~~~--~~~~l~sgs~dg~----v~ 487 (538)
+.. ....+.++.++++++++|+.||+|++||.. +.++.+ .+|...|+++++ ++.++++|+.||+ |+
T Consensus 256 ~~~-~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~ 334 (342)
T d2ovrb2 256 PNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334 (342)
T ss_dssp TTS-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred cce-eeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEE
Confidence 432 222334666778899999999999999964 455554 357889999987 7789999999985 99
Q ss_pred EEecCC
Q 009274 488 VQELAG 493 (538)
Q Consensus 488 iwd~~~ 493 (538)
+||+..
T Consensus 335 ~~Df~~ 340 (342)
T d2ovrb2 335 VLDFDV 340 (342)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999864
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=2.6e-27 Score=227.58 Aligned_cols=240 Identities=15% Similarity=0.256 Sum_probs=182.7
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 362 (538)
+..++|++|.+.|++++|+|+ +.+|++|+.||+|++||+.++..... +..+.. ....++++|+++++++|+.|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~---~~~~~~--~v~~v~~~~~~~~l~~~~~d~ 119 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSS--WVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEE---EECSCS--CEEEEEECTTSSEEEEEETTC
T ss_pred eeeEEECCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccceeEEE---Eecccc--cEEeeEeeccceeeeeecccc
Confidence 455789999999999999985 55889999999999999987654333 333322 223558889999999999999
Q ss_pred cEEEEECCCCc----eeEEec-----------------------------------------CCCCCeEEEEEe--CCEE
Q 009274 363 TIKAWSLLDGT----LSCTMS-----------------------------------------GHKSAVSTLAVC--NGVL 395 (538)
Q Consensus 363 ~i~iwd~~~~~----~~~~~~-----------------------------------------~h~~~v~~l~~~--~~~l 395 (538)
.+++|+..... ....+. .+...+....+. +.++
T Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (340)
T d1tbga_ 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence 99999975431 111222 223344555555 4589
Q ss_pred EEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc--eee--eccccceEEEEE
Q 009274 396 YSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKS--MQTHKGSVFAVF 471 (538)
Q Consensus 396 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~--~~~h~~~v~~~~ 471 (538)
++++.|+.|++||+++++.+..+..+. ..+.+ ++++|++++|++|+.||.|++||.... ... ...|...+.++.
T Consensus 200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~-~~i~~-v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 200 VSGACDASAKLWDVREGMCRQTFTGHE-SDINA-ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEeecCceEEEEECCCCcEEEEEeCCC-CCeEE-EEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence 999999999999999999999888653 44444 699999999999999999999996643 222 345677788887
Q ss_pred e--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEe-CC-EEEEEECCCeEEEEE
Q 009274 472 L--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QG-KLFVGCADRTVKVYY 535 (538)
Q Consensus 472 ~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~sg~~dg~v~vw~ 535 (538)
+ ++++|++|+.||.|++||+.+++....... +...+.++.+. ++ .|++|+.||.|++||
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 7 889999999999999999998887655442 33356666554 54 588999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.6e-26 Score=227.73 Aligned_cols=288 Identities=16% Similarity=0.195 Sum_probs=201.7
Q ss_pred EeecCCCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCc------eEEEEecCCcCeEEEEEe------cCCCCEEEEEcCC
Q 009274 247 DLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS------HVHTFKGHDHKVMAVVYV------DEDQPLCISGDSG 314 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~------~~~~~~l~s~~~d 314 (538)
..++|.+.|.++++++++++|+|.|++|+|||..+.+ .......|...+..+... +....++++++.|
T Consensus 9 ~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 88 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88 (393)
T ss_dssp ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence 3689999999999999999999999999999976543 233344565554433322 1223467899999
Q ss_pred CcEEEEEccCCCCCcceeeeccc-----CCceeeeEEEEeec-----CCEEEEeeCCCcEEEEECCCCc-----------
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEE-----KDWRYSGIHALTTS-----GRYLYTGSGDRTIKAWSLLDGT----------- 373 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~l~sg~~dg~i~iwd~~~~~----------- 373 (538)
|.|++|++............... .........++.++ +.++++++.||++++||+....
T Consensus 89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 168 (393)
T d1sq9a_ 89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 168 (393)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence 99999998766544333221110 01111122344443 4589999999999999985321
Q ss_pred -------eeEEecCCCCCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecC-----CCCceEEEEEEcCCCCEEE
Q 009274 374 -------LSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEED-----SSGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 374 -------~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~ 440 (538)
.......+...+.+++|+ +++|++|+.|++|++||+++++.+..+... |...+.+ ++|+|++++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~ 247 (393)
T d1sq9a_ 169 PTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS-VKFSPQGSLLA 247 (393)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE-EEECSSTTEEE
T ss_pred cceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEE-cccccccceee
Confidence 111123456678999999 669999999999999999999887766532 2344444 79999999999
Q ss_pred EEeCCCc---EEEEeCC--cceee-------------eccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeee
Q 009274 441 VSHESGS---IKVWRND--KFMKS-------------MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDV 500 (538)
Q Consensus 441 ~~~~dg~---i~iwd~~--~~~~~-------------~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 500 (538)
+|+.|++ |++||.. +.+.. +.+|...|++++| ++++|+|||.|++|++||++++++...+
T Consensus 248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l 327 (393)
T d1sq9a_ 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 327 (393)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence 9999874 8999954 33333 3579999999988 8999999999999999999999876654
Q ss_pred ecC-Ccc----------------cCCCceEEEEEeC-----------CEEEEEECCCeEEEEE
Q 009274 501 IPT-GAI----------------PCGSVITALLYWQ-----------GKLFVGCADRTVKVYY 535 (538)
Q Consensus 501 ~~~-~~~----------------~~~~~~~~~~~~~-----------~~l~sg~~dg~v~vw~ 535 (538)
... ..+ .........+++. ..+++++.|+.|++|+
T Consensus 328 ~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 328 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 321 111 0112222333321 2488999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=7.5e-27 Score=223.91 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=180.6
Q ss_pred EEEeecC-CCcEEEEEEc----CCEEEEEeCCCcEEEEeCCCCce--------EEEEecCCcCeEEEEEecCCCCEEEEE
Q 009274 245 FKDLQGH-RDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSH--------VHTFKGHDHKVMAVVYVDEDQPLCISG 311 (538)
Q Consensus 245 i~~l~~h-~~~V~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~h~~~v~~l~~~~~~~~~l~s~ 311 (538)
+..+.+| ...|++++|+ +.+|++|+.||+|+|||+..++. ...+..|.++|.+++|++++..+++++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence 3446677 4689999996 67999999999999999865432 234567899999999999776554443
Q ss_pred -cCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeE
Q 009274 312 -DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVS 386 (538)
Q Consensus 312 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~ 386 (538)
+.++.+++|+++++... .....+.. ....+++++++. .+++++.|+.+++||..+++....+ ..|...|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~---~~~~~h~~--~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~ 209 (325)
T d1pgua1 135 EGRDNFGVFISWDSGNSL---GEVSGHSQ--RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 209 (325)
T ss_dssp CCSSCSEEEEETTTCCEE---EECCSCSS--CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred ccccceEEEEeecccccc---eeeeeccc--ccccccccccccceEEEeecccccccccccccccceecccccCCCCccE
Confidence 45789999999865433 22322222 122357778776 5788999999999999887766554 45778899
Q ss_pred EEEEe---CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEE-EcCCCCEEEEEeCCCcEEEEeCC--cceeee
Q 009274 387 TLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLS-LTAVQHTLVVSHESGSIKVWRND--KFMKSM 460 (538)
Q Consensus 387 ~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~ 460 (538)
+++|+ +.++++++.|+.|++||+++++.+..+..+.......+.+ ..+++++|++++.|+.|++||.. ++++.+
T Consensus 210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~ 289 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 289 (325)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 99998 3589999999999999999999999888654432211112 12688999999999999999954 466666
Q ss_pred ccccce----EEEEEe-CCCEEEEEeCCCeEEEEec
Q 009274 461 QTHKGS----VFAVFL-EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 461 ~~h~~~----v~~~~~-~~~~l~sgs~dg~v~iwd~ 491 (538)
..|... ..++.+ .+.+|++++.||.|++||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 554432 345555 5568999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=6.6e-27 Score=221.22 Aligned_cols=261 Identities=15% Similarity=0.199 Sum_probs=199.2
Q ss_pred ccceeeeeccCcceeEEeecCCeEEEEEe----------ecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCce---E
Q 009274 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL----------QGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSH---V 285 (538)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l----------~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~---~ 285 (538)
..|.++.+++++..++++..++.+++|++ .+|...|++++|+ ...+++++.|+.+++|+...... .
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~ 92 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK 92 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTS
T ss_pred CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccc
Confidence 34888899999999999999999999985 3699999999999 55677888899999999864321 2
Q ss_pred EEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEE
Q 009274 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (538)
Q Consensus 286 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 365 (538)
.....+...+.+++|++++. +++ ++.++.+++|+.... ...... ......+++++++++++|+.||.|+
T Consensus 93 ~~~~~~~~~~~~~~~s~~g~-~~~-~~~~~~i~~~~~~~~-----~~~~~~----~~~~~~~~s~~~~~l~~g~~dg~i~ 161 (299)
T d1nr0a2 93 AVANKLSSQPLGLAVSADGD-IAV-AACYKHIAIYSHGKL-----TEVPIS----YNSSCVALSNDKQFVAVGGQDSKVH 161 (299)
T ss_dssp CCEEECSSCEEEEEECTTSS-CEE-EEESSEEEEEETTEE-----EEEECS----SCEEEEEECTTSCEEEEEETTSEEE
T ss_pred cccccccccccccccccccc-ccc-ccccccccccccccc-----cccccc----ccccccccccccccccccccccccc
Confidence 23345778899999998765 333 345678999985421 111111 1224568899999999999999999
Q ss_pred EEECCCCceeE-EecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEec--CCCCceEEEEEEcCCCCEEE
Q 009274 366 AWSLLDGTLSC-TMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE--DSSGAVSSVLSLTAVQHTLV 440 (538)
Q Consensus 366 iwd~~~~~~~~-~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 440 (538)
+||+++++... ....|...|++++|+ +.++++++.|+.|++||+.++........ .+...+.+ ++|+|++++|+
T Consensus 162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~ 240 (299)
T d1nr0a2 162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC-VSWSPDNVRLA 240 (299)
T ss_dssp EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE-EEECTTSSEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccceE
Confidence 99998877544 345689999999999 56999999999999999988765543321 12334444 68999999999
Q ss_pred EEeCCCcEEEEeCCcc----eeeecc-ccceEEEEEe-CCCEEEEEeCCCeEEEEecC
Q 009274 441 VSHESGSIKVWRNDKF----MKSMQT-HKGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 441 ~~~~dg~i~iwd~~~~----~~~~~~-h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~~ 492 (538)
+|+.||.|++||..+. ...... +...+.++.+ ++++|++++.||.|++||+.
T Consensus 241 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred EEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 9999999999996532 222223 4456777765 88999999999999999984
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.4e-24 Score=202.23 Aligned_cols=249 Identities=15% Similarity=0.168 Sum_probs=190.0
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEE----eecCCCcEEEEEEc-CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCe
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKD----LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV 295 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~----l~~h~~~V~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 295 (538)
+|..+.+.+ ++++..++.+++|+ ..+|...|.+++++ +..+++++.|++|++|++.+. .....+
T Consensus 15 ~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~-------~~~~~~ 83 (287)
T d1pgua2 15 GITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH-------EFGSQP 83 (287)
T ss_dssp CEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE-------ECSSCE
T ss_pred ceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccccc-------ccccce
Confidence 355555543 89999999999996 56899999999999 888999999999999997532 133456
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCC-cEEEEECCCCce
Q 009274 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-TIKAWSLLDGTL 374 (538)
Q Consensus 296 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~ 374 (538)
..+.+.++ +.+ +..+.++.+.+|+..++.....+. .. ....+++++++.+++++.|+ .+++|++...+.
T Consensus 84 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~ 153 (287)
T d1pgua2 84 KVASANND-GFT-AVLTNDDDLLILQSFTGDIIKSVR---LN-----SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 153 (287)
T ss_dssp EEEEECSS-SEE-EEEETTSEEEEEETTTCCEEEEEE---CS-----SCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred eeeeeccC-Cce-EEEeecccceeeeccceeeeeecc---cc-----ceeeeeeccCcceeeeccccceeeeeeccccce
Confidence 77777654 334 444556778899887654332222 11 12457888899888888775 799999987666
Q ss_pred eEEec-CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC----------CCCEEEE
Q 009274 375 SCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA----------VQHTLVV 441 (538)
Q Consensus 375 ~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~ 441 (538)
...+. .|...+++++|+ +.+|++|+.||.|++||+.+++........|...+.. ++|+| ++.++++
T Consensus 154 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~~~~~~~~l~s 232 (287)
T d1pgua2 154 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA-ISWKPAEKGANEEEIEEDLVAT 232 (287)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE-EEECCCC------CCSCCEEEE
T ss_pred eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccce-eeecccccccccccCCCCeeEe
Confidence 65553 477899999999 5599999999999999999988765544444444444 57765 4578999
Q ss_pred EeCCCcEEEEeCC---cceeeeccccceEEEEEe-CCCEEEEEeCCCeEEEEec
Q 009274 442 SHESGSIKVWRND---KFMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQEL 491 (538)
Q Consensus 442 ~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~-~~~~l~sgs~dg~v~iwd~ 491 (538)
|+.|++|++||.. +....+.+|...|.++.| ++..|++++.||.|++|++
T Consensus 233 gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 9999999999964 356667889999999987 5567999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3e-24 Score=205.25 Aligned_cols=275 Identities=12% Similarity=0.048 Sum_probs=207.6
Q ss_pred CCccceeeeeccCcceeEEeecCCeEEEEEee------------cCCCcEEEEEEc---CCEEEEEeCCCcEEEEeCCCC
Q 009274 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ------------GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF 282 (538)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~------------~h~~~V~~l~~~---~~~l~s~s~dg~i~iwd~~~~ 282 (538)
+...|..+.+++++..+++++.|+.+++|++. +|.++|++++|+ +.+|++|+.||+|++|++...
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence 34458899999999999999999999999852 599999999997 558999999999999999988
Q ss_pred ceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeee-cccCCceeeeEEEEeecCCEEEEeeCC
Q 009274 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW-NEEKDWRYSGIHALTTSGRYLYTGSGD 361 (538)
Q Consensus 283 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~d 361 (538)
........+........+.+.+...+++++.|+++++||++........... .............+.++++.+++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (342)
T d1yfqa_ 90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCC
Confidence 8887777666655555555557778899999999999998765443333221 222222233455778889999999999
Q ss_pred CcEEEEECCCCceeE---EecCCCCCeEEEEEe---CCEEEEEecCCcEEEEECCCCcee------EEEec--------C
Q 009274 362 RTIKAWSLLDGTLSC---TMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLL------TVLEE--------D 421 (538)
Q Consensus 362 g~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~--------~ 421 (538)
+.|++||++..+... ....+...+.+..+. +..+++++.||.+.+|+....... ..+.. .
T Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
T d1yfqa_ 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249 (342)
T ss_dssp TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCc
Confidence 999999998765433 233455566666665 558999999999999998654321 11110 1
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeec-cccceEEEEEeCCCEEEEEeCCCeEEEEecCC
Q 009274 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQ-THKGSVFAVFLEGKWLFTGGWDKTVSVQELAG 493 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~-~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~ 493 (538)
+... ...++|+|++++|++|+.||.|++||..+ .+..+. .|...+.+++++++++++++.|+.+++|....
T Consensus 250 ~~~~-v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 250 LAYP-VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp SCCC-EEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred cccc-ceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 1122 33479999999999999999999999654 455554 46778899999999999999999998887643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.6e-22 Score=198.80 Aligned_cols=244 Identities=15% Similarity=0.192 Sum_probs=173.6
Q ss_pred cceeeeeccCcceeEEeecCCeEEEEEee---------------cCCCcEEEEEEc---------CCEEEEEeCCCcEEE
Q 009274 221 DIDQARAAGGVKDLVNGLSKGNVKFKDLQ---------------GHRDCVTGLAVG---------GGFLFSSSFDKSIHV 276 (538)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~---------------~h~~~V~~l~~~---------~~~l~s~s~dg~i~i 276 (538)
.|..+.+ .++.+++++.|+.+++|+.. .|...+..+... +.++++++.||.|++
T Consensus 16 ~I~~v~~--~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~ 93 (393)
T d1sq9a_ 16 DIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 93 (393)
T ss_dssp CEEEEEE--CSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred ccEEEEE--eCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEE
Confidence 3545544 34689999999999999843 344444333321 357889999999999
Q ss_pred EeCCCCceEE-----EEe-----cCCcCeEEEEEecCC----CCEEEEEcCCCcEEEEEccCCCCCcc-----------e
Q 009274 277 WSLKDFSHVH-----TFK-----GHDHKVMAVVYVDED----QPLCISGDSGGGIFVWSFSFPLGHEP-----------L 331 (538)
Q Consensus 277 wd~~~~~~~~-----~~~-----~h~~~v~~l~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~-----------~ 331 (538)
|++....... ... .+...+..++|.++. ..++++++.||++++|++........ +
T Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 173 (393)
T d1sq9a_ 94 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173 (393)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred EEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceec
Confidence 9975432211 111 244567888887654 35789999999999999864321100 0
Q ss_pred eee--cccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe------cCCCCCeEEEEEe--CCEEEEEecC
Q 009274 332 KKW--NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM------SGHKSAVSTLAVC--NGVLYSGSRD 401 (538)
Q Consensus 332 ~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~------~~h~~~v~~l~~~--~~~l~s~s~d 401 (538)
... ............++++++ +|++|+.||+|++||+.+++++..+ .+|..+|++++|+ +.+|++|+.|
T Consensus 174 ~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D 252 (393)
T d1sq9a_ 174 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252 (393)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred ccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC
Confidence 000 001111122345777776 8999999999999999998876644 5689999999999 5699999999
Q ss_pred Cc---EEEEECCCCceeEEEec------------CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC--Ccceeeecccc
Q 009274 402 GT---IRLWSLSDHSLLTVLEE------------DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHK 464 (538)
Q Consensus 402 g~---i~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~h~ 464 (538)
++ |++||+++++.+..+.. .|...+.+ ++|+|++++|++|+.|++|++||. ++++.++.+|.
T Consensus 253 ~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~-l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS-LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCcceeeecccccceeeeeeccccccccceeeeecccCceee-eccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence 75 89999999998887752 23444554 699999999999999999999994 56788899998
Q ss_pred ceEE
Q 009274 465 GSVF 468 (538)
Q Consensus 465 ~~v~ 468 (538)
..|.
T Consensus 332 ~~v~ 335 (393)
T d1sq9a_ 332 DDIE 335 (393)
T ss_dssp GGCS
T ss_pred Cccc
Confidence 7664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=4e-22 Score=192.72 Aligned_cols=257 Identities=9% Similarity=0.057 Sum_probs=182.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC-cEEEEEccCCCCCcceeeecccCCc
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG-GIFVWSFSFPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (538)
|+++++++ +|.|++||+++++..+. .|...|.+++|+|+++.+++++..++ .|++||.+++... ....+.
T Consensus 15 G~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~----~~~~~~-- 85 (360)
T d1k32a3 15 GDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE----KFEENL-- 85 (360)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE----ECCCCC--
T ss_pred CCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE----EeeCCC--
Confidence 88888876 57999999988877653 69999999999998776655565554 7999999875432 222222
Q ss_pred eeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe----------cCCcEEEEE
Q 009274 341 RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS----------RDGTIRLWS 408 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s----------~dg~i~iwd 408 (538)
......+++|++++|++++.++.+++|++.+++....+..|...+.+++|+ +++|+.++ .++.+++||
T Consensus 86 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d 165 (360)
T d1k32a3 86 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165 (360)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred ceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence 222356899999999999999999999999999999999999999999999 45666543 345699999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc---------eeeecc-----------------
Q 009274 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF---------MKSMQT----------------- 462 (538)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~----------------- 462 (538)
+.+++........ .. .....++|+|+.|++++.++.+.+||.... ...+..
T Consensus 166 ~~~~~~~~~~~~~--~~-~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (360)
T d1k32a3 166 MEGRKIFAATTEN--SH-DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242 (360)
T ss_dssp TTTTEEEECSCSS--SB-EEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSC
T ss_pred cccCceeeecccc--cc-cccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcc
Confidence 9988765444322 22 334689999999999999999999973210 000000
Q ss_pred -------------------ccceEEEEEe---------------CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccC
Q 009274 463 -------------------HKGSVFAVFL---------------EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508 (538)
Q Consensus 463 -------------------h~~~v~~~~~---------------~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~ 508 (538)
..+....+.. ++.++++++.++.+++||+.+++......+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------ 316 (360)
T d1k32a3 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN------ 316 (360)
T ss_dssp CCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEE------
T ss_pred cccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCC------
Confidence 0111112211 112456677789999999998875432211
Q ss_pred CCceEEEEEeCC-EEEEEECCCeEEEEEcCC
Q 009274 509 GSVITALLYWQG-KLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 509 ~~~~~~~~~~~~-~l~sg~~dg~v~vw~~~~ 538 (538)
+....+++|+ +|++++.||.|++|++.+
T Consensus 317 --v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~ 345 (360)
T d1k32a3 317 --LTDLRLSADRKTVMVRKDDGKIYTFPLEK 345 (360)
T ss_dssp --EEEEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred --cCEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 2233445566 488899999999999864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=2e-20 Score=180.49 Aligned_cols=264 Identities=10% Similarity=-0.001 Sum_probs=180.9
Q ss_pred eeecc-CcceeEEeecCCeEEEEEe-------ecCCCcEEEEEEc--CCEEEEEeCCC--cEEEEeCCCCceEEEEecCC
Q 009274 225 ARAAG-GVKDLVNGLSKGNVKFKDL-------QGHRDCVTGLAVG--GGFLFSSSFDK--SIHVWSLKDFSHVHTFKGHD 292 (538)
Q Consensus 225 ~~~~~-~~~~~~~~~~~~~~~i~~l-------~~h~~~V~~l~~~--~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~ 292 (538)
..+++ +++.++.. ..+.+.+|++ .+|...|++++|+ |++|++++.+. .|++||+++++.. .+..|.
T Consensus 8 ~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~ 85 (360)
T d1k32a3 8 EDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL 85 (360)
T ss_dssp EEEEECGGGCEEEE-ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC
T ss_pred ccccCCCCCEEEEE-ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC
Confidence 34555 44444443 3455655553 2699999999999 88888776553 7999999887654 567899
Q ss_pred cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee----------CCC
Q 009274 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS----------GDR 362 (538)
Q Consensus 293 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~----------~dg 362 (538)
..|.+++|+|++ .++++++.++.+++|++.+........... ......+++|+|++|+.++ .++
T Consensus 86 ~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 86 GNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSRE-----AMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp CSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSS-----SCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred ceEEeeeecccc-cccceeccccccccccccccceeeeeeccc-----ccccchhhccceeeeeeeccccccceeecccc
Confidence 999999999954 577999999999999998765433332211 1223468999999888543 455
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCce-------eEEEecCC-----------
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSL-------LTVLEEDS----------- 422 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~----------- 422 (538)
.+++||+.+++.... ..|...+.+++|+ ++.|++++.|+.+.+||...... ...+..+.
T Consensus 160 ~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 160 AIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp EEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred ceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence 799999988766544 4577788899999 56999999999999998754321 11111100
Q ss_pred -----------------------CCceEEEEEEcCCC-------------CEEEEEeCCCcEEEEeCCcceeeeccccce
Q 009274 423 -----------------------SGAVSSVLSLTAVQ-------------HTLVVSHESGSIKVWRNDKFMKSMQTHKGS 466 (538)
Q Consensus 423 -----------------------~~~~~~~~~~~~~~-------------~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~ 466 (538)
.......+...+++ .++++++.++.+++||..+. ....|.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~ 316 (360)
T d1k32a3 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--KVTEVKNN 316 (360)
T ss_dssp GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC--CEEEEEEE
T ss_pred cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC--eEEEecCC
Confidence 00000112222222 23445556789999997653 23455667
Q ss_pred EEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEee
Q 009274 467 VFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (538)
Q Consensus 467 v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~ 499 (538)
|.+++| ||++|++++.||.|++||+++++....
T Consensus 317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~ 351 (360)
T d1k32a3 317 LTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351 (360)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred cCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 777766 999999999999999999988765443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=1e-19 Score=180.58 Aligned_cols=272 Identities=11% Similarity=0.006 Sum_probs=169.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceee
Q 009274 264 FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS 343 (538)
Q Consensus 264 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
++++.+.||+|++||+.+++.+.+++.|. .+..++|+|++. ++++++.|+++++||+.+++.................
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 45778899999999999999999999874 589999999665 6688899999999999887643322211111111111
Q ss_pred eEEEEeecCCEEE-EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEEecCCc-----------EEEEE
Q 009274 344 GIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDGT-----------IRLWS 408 (538)
Q Consensus 344 ~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~-----------i~iwd 408 (538)
...+++|||++++ ++..++.+++||..+++++..+..|...+....+. +. ..++.+.|+. +.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 1235678999764 45588999999999999988887766555444444 11 3334444444 44444
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC-CcEEEEeCC---------------------------------
Q 009274 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-GSIKVWRND--------------------------------- 454 (538)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~--------------------------------- 454 (538)
..+............... ..+.++|++++++++..+ ..+.+++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T d1hzua2 192 YKDIDNLTVTSIGAAPFL-ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST 270 (426)
T ss_dssp CSSSSSCEEEEEECCSSE-EEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred eccccceeeEEeccCCcc-EeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence 433332221111112222 235788888877666532 334444321
Q ss_pred -----------------------cceeeeccccceEEEEEe--CCCEEEE-------EeCCCeEEEEecCCCeeEeeeec
Q 009274 455 -----------------------KFMKSMQTHKGSVFAVFL--EGKWLFT-------GGWDKTVSVQELAGDEFEEDVIP 502 (538)
Q Consensus 455 -----------------------~~~~~~~~h~~~v~~~~~--~~~~l~s-------gs~dg~v~iwd~~~~~~~~~~~~ 502 (538)
+....+.+|...+..+++ ++++|++ ++.|++|++||+.+++.......
T Consensus 271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~ 350 (426)
T d1hzua2 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 350 (426)
T ss_dssp ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence 123345566666766655 8999994 55688999999998765433322
Q ss_pred CC-----cccCCCceEEEEEeCCE-E-EEE----ECCCeEEEEEcCC
Q 009274 503 TG-----AIPCGSVITALLYWQGK-L-FVG----CADRTVKVYYYGK 538 (538)
Q Consensus 503 ~~-----~~~~~~~~~~~~~~~~~-l-~sg----~~dg~v~vw~~~~ 538 (538)
.. ......+....+++||+ + +++ +.+|.|+|||..+
T Consensus 351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T 397 (426)
T d1hzua2 351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 397 (426)
T ss_dssp HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence 11 11123344455667875 4 343 3588999999754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=2.5e-18 Score=161.18 Aligned_cols=257 Identities=12% Similarity=0.091 Sum_probs=183.4
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeee
Q 009274 265 LFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (538)
Q Consensus 265 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
+++++.|++|.+||+++++.+++++.. .....++|+|++..++++++.++.|++||+.++.....+. .+.. ..
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~~~---~~ 77 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AGSS---PQ 77 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CSSS---EE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cccc---cc
Confidence 456778999999999999999998854 4578999999888787889999999999998765433332 2221 12
Q ss_pred EEEEeecCCE-EEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEEecCCcEEEEECCCCceeEEEec
Q 009274 345 IHALTTSGRY-LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDGTIRLWSLSDHSLLTVLEE 420 (538)
Q Consensus 345 ~~~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~ 420 (538)
...++++++. ++++..++.+.+||..+++....+..+ ....++.++ +. .++++..++.+.+|+..+++....+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (301)
T d1l0qa2 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence 3477888884 555667789999999999988888754 556788888 33 456667788999999999998888775
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCC-CcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeC---CCeEEEEecC
Q 009274 421 DSSGAVSSVLSLTAVQHTLVVSHES-GSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGW---DKTVSVQELA 492 (538)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~---dg~v~iwd~~ 492 (538)
... . ..+.+++++..+++++.+ +.+.+|+... .......+ .....+.+ ++..++.++. ++.|++||+.
T Consensus 157 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~ 232 (301)
T d1l0qa2 157 GRS--P-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (301)
T ss_dssp CSS--E-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred CCC--c-eEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecC
Confidence 432 2 336899999988888766 5566666443 33333333 33444444 7887765543 4689999999
Q ss_pred CCeeEeeeecCCcccCCCceEEEEEeCCE-E-EEEECCCeEEEEEcCC
Q 009274 493 GDEFEEDVIPTGAIPCGSVITALLYWQGK-L-FVGCADRTVKVYYYGK 538 (538)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~sg~~dg~v~vw~~~~ 538 (538)
+++........ ..+....+.+|++ | ++++.|+.|++||+.+
T Consensus 233 t~~~~~~~~~~-----~~~~~va~spdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 233 TNKITARIPVG-----PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp TTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred CCeEEEEEcCC-----CCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 99876654432 2233444556664 5 4677899999999863
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.3e-18 Score=165.92 Aligned_cols=263 Identities=10% Similarity=0.012 Sum_probs=180.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecC--CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCc
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGH--DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (538)
+++++++.|++|++||+++++.+..+..+ ...+.+++|+|++..++++++.++.|.+||+.+++....+.........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 68999999999999999999999998754 4567899999988777788889999999999987654444332221111
Q ss_pred eeeeEEEEeecCCEEEEee------------CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEE
Q 009274 341 RYSGIHALTTSGRYLYTGS------------GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRL 406 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~i 406 (538)
......++++++++++++. .+..+.+||..+++....+.. ...+.+++|+ +.++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 2222458899999888776 467899999999998888874 4567889998 447777754 4788
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCE------------------------EEEEeCCCcEEEEeCCcc---eee
Q 009274 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT------------------------LVVSHESGSIKVWRNDKF---MKS 459 (538)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------l~~~~~dg~i~iwd~~~~---~~~ 459 (538)
||..+++....+..+..... ..+++++.. ...+..++.+.+||.... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred eeeecCcEEEEeecCCcccc---ceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 99999988777654322111 111222111 111222345777774432 222
Q ss_pred eccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEECCCeEEEEEc
Q 009274 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKVYYY 536 (538)
Q Consensus 460 ~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~dg~v~vw~~ 536 (538)
+..+......+.+ ++.+++.+ ++.|++||+.+++......... .+....+.+|+. |++++.||.|++||.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH-----SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS-----CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCC-----CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 3345555555554 67777665 5899999999998877655432 233444556664 788999999999997
Q ss_pred CC
Q 009274 537 GK 538 (538)
Q Consensus 537 ~~ 538 (538)
.+
T Consensus 309 ~t 310 (337)
T d1pbyb_ 309 ET 310 (337)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1e-18 Score=173.12 Aligned_cols=187 Identities=7% Similarity=-0.055 Sum_probs=135.2
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeee
Q 009274 265 LFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (538)
Q Consensus 265 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
+++.+.||+|.|||..+++.+..++.| ..+..++|+|++ +++++++.|+++++||+.+.+..................
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 588899999999999999999999977 469999999965 466888999999999998765432221111111111111
Q ss_pred EEEEeecCCEE-EEeeCCCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe--CC-EEEEEecCCcEEEEEC
Q 009274 345 IHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC--NG-VLYSGSRDGTIRLWSL 409 (538)
Q Consensus 345 ~~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~ 409 (538)
...++|||+++ ++++.+++|++||..+++++..+..| ......+.++ +. ++++...++.|.+||.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 12457799965 77888999999999999988877544 3445667777 33 5567778899999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC-CcEEEEeCC
Q 009274 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-GSIKVWRND 454 (538)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~ 454 (538)
.+.+.............. .+.++|+|+++++++.+ +.+.++|..
T Consensus 193 ~~~~~~~~~~i~~g~~~~-~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLH-DGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp TCSSEEEEEEEECCSSEE-EEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred cCCCcceEEEEcccCccc-cceECCCCCEEEEeccccceEEEeecc
Confidence 988765544433333333 47999999988877754 567777754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.79 E-value=2.3e-16 Score=147.50 Aligned_cols=245 Identities=13% Similarity=0.140 Sum_probs=178.4
Q ss_pred EEEEeecCCCcEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
.+..+... ..+..++|+ |+++ ++++.++.|++||+.+++.+..+..+.. +..++|++++..+++++..++.+.+|
T Consensus 24 ~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (301)
T d1l0qa2 24 VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVI 101 (301)
T ss_dssp EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeec
Confidence 34444433 457889998 7776 5677899999999999999999987764 68899999888888889999999999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEE-EEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEE
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (538)
+..++.....+.. .. .....+++++++.+ +++..++.+.+|+..+++.+..+..+ ..+.+++++ ++.+++
T Consensus 102 ~~~~~~~~~~~~~---~~---~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 174 (301)
T d1l0qa2 102 DTTSNTVAGTVKT---GK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYV 174 (301)
T ss_dssp ETTTTEEEEEEEC---SS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred ccccceeeeeccc---cc---cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceee
Confidence 9886543333322 11 12356788999865 55666889999999999988888754 457888888 446666
Q ss_pred Eec-CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeC---CCcEEEEeCCc--ceeeeccccceEEEEE
Q 009274 398 GSR-DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE---SGSIKVWRNDK--FMKSMQTHKGSVFAVF 471 (538)
Q Consensus 398 ~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~h~~~v~~~~ 471 (538)
++. ++.+.+|+....+......... . ...+.++++++.+++++. ++.|++||..+ ....+..+ ..+.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va 250 (301)
T d1l0qa2 175 ANFDSMSISVIDTVTNSVIDTVKVEA--A-PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA 250 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSS--E-EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred ecccccccccccccceeeeecccccC--C-cceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEE
Confidence 654 4667788887777666665432 2 233689999998876653 46799999654 44445443 3456666
Q ss_pred e--CCCEE-EEEeCCCeEEEEecCCCeeEeeee
Q 009274 472 L--EGKWL-FTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 472 ~--~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
+ ||++| ++++.|+.|++||+++++......
T Consensus 251 ~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 251 VTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 5 88876 577789999999999998766553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=6.4e-18 Score=161.59 Aligned_cols=269 Identities=9% Similarity=0.043 Sum_probs=179.4
Q ss_pred EEc--CCEEEEEeCCCcEEEEeCCCCceEEEEec-CCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec
Q 009274 259 AVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335 (538)
Q Consensus 259 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 335 (538)
+++ ++++++++.|++|.+||+.+++.+.+++. |...+.+++|+|++..+++++..++.|++||+.+++.........
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence 455 78999999999999999999999999874 566788999999888888888999999999998765443332211
Q ss_pred ccCCc-eeeeEEEEeecCCEEEEee------------CCCcEEEEECCCCceeEEecCC--CCCeEEEEEe-CCEEEEEe
Q 009274 336 EEKDW-RYSGIHALTTSGRYLYTGS------------GDRTIKAWSLLDGTLSCTMSGH--KSAVSTLAVC-NGVLYSGS 399 (538)
Q Consensus 336 ~~~~~-~~~~~~~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~-~~~l~s~s 399 (538)
..... ......++++||+++++++ .++.+.+||..+++....+..+ ...+..+.++ ++.++..+
T Consensus 83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162 (346)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC
Confidence 11110 1122458899999887765 4678999999887765544322 3345556666 45555543
Q ss_pred cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC--------------------------EEEEEeCCCcEEEEeC
Q 009274 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH--------------------------TLVVSHESGSIKVWRN 453 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~l~~~~~dg~i~iwd~ 453 (538)
+.+.+||+.+++.+..+..+..... ..++|++. .+.++..++.+.+||.
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 163 --PDIYKMDVKTGKYTVALPLRNWNRK---GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp --SSEEEECTTTCCEEEEECSTTCCCT---TBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred --CcceEEEccCCCEEEEEecCCCccc---eEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence 5689999999988887754321100 12333332 2333344556777774
Q ss_pred Ccc---eeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEEC
Q 009274 454 DKF---MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCA 527 (538)
Q Consensus 454 ~~~---~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~ 527 (538)
... ......|...+.++.+ ++.+++... ++.|++||..+++......... .+....+.+|+. +++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~-----~~~~va~s~DG~~l~v~~~ 311 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH-----TYYCVAFDKKGDKLYLGGT 311 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSS-----CCCEEEECSSSSCEEEESB
T ss_pred CCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCC-----CEEEEEEcCCCCEEEEEeC
Confidence 432 2334456666666654 666666655 4689999999998766554322 234455556664 888999
Q ss_pred CCeEEEEEcCC
Q 009274 528 DRTVKVYYYGK 538 (538)
Q Consensus 528 dg~v~vw~~~~ 538 (538)
||.|++||..+
T Consensus 312 d~~v~v~D~~t 322 (346)
T d1jmxb_ 312 FNDLAVFNPDT 322 (346)
T ss_dssp SSEEEEEETTT
T ss_pred CCcEEEEECcc
Confidence 99999999863
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=1.6e-17 Score=164.43 Aligned_cols=290 Identities=10% Similarity=-0.041 Sum_probs=175.3
Q ss_pred CCeEEEEEeecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCce--EEEEe---cCCcCeEEEEEecCCCCEEEEEc
Q 009274 240 KGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH--VHTFK---GHDHKVMAVVYVDEDQPLCISGD 312 (538)
Q Consensus 240 ~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~~~~~l~s~~ 312 (538)
+....+..+..| ..+..++|+ |+++++++.|++|++||+.+++. ...++ .|.+.+.+..|+|++..++++++
T Consensus 50 ~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~ 128 (432)
T d1qksa2 50 STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY 128 (432)
T ss_dssp TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC
Confidence 333344556666 469999999 99999999999999999988764 33333 45556666677788887889999
Q ss_pred CCCcEEEEEccCCCCCcceeeecccC------CceeeeEEEEeecCCE-EEEeeCCCcEEEEECCCCceeEEec-CCCCC
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEK------DWRYSGIHALTTSGRY-LYTGSGDRTIKAWSLLDGTLSCTMS-GHKSA 384 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~ 384 (538)
.+++|++||..+++............ .........+++++.. +++...++.|.+||..+.+...... .+...
T Consensus 129 ~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~ 208 (432)
T d1qksa2 129 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208 (432)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCc
Confidence 99999999998776443332211100 0011112466788875 4666778999999998877544332 35567
Q ss_pred eEEEEEe--CCEEEEEe-cCCcEEEEECCCCceeEEEecCC----CCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCcc
Q 009274 385 VSTLAVC--NGVLYSGS-RDGTIRLWSLSDHSLLTVLEEDS----SGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF 456 (538)
Q Consensus 385 v~~l~~~--~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 456 (538)
..+++|+ ++++++++ .++.+.++|..+++....+.... ...... ......+....+.. .++.+.+|+....
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccc-eecCCCCceecccccCCceEEecccccc
Confidence 8899999 44565555 56679999998887776654321 111111 22333333333322 2556666653210
Q ss_pred ---------eeee-------------------------ccccceEEEEE-eCCCEEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 457 ---------MKSM-------------------------QTHKGSVFAVF-LEGKWLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 457 ---------~~~~-------------------------~~h~~~v~~~~-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
...+ ..|.....+++ ||++.+++++.|+.+++|++.+.... ..
T Consensus 288 ~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l--~~ 365 (432)
T d1qksa2 288 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI--TE 365 (432)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC--CS
T ss_pred cccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccccccc--CC
Confidence 1111 11111111122 68888888888888888887543211 11
Q ss_pred cCCcccCCCceEEEEEeCCE-EEEE-----ECCCeEEEEEcCC
Q 009274 502 PTGAIPCGSVITALLYWQGK-LFVG-----CADRTVKVYYYGK 538 (538)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~-l~sg-----~~dg~v~vw~~~~ 538 (538)
+ +..++...+++||+ +++. ..+|.|.|||-.+
T Consensus 366 ~-----~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 366 G-----QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 403 (432)
T ss_dssp S-----CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred C-----CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCC
Confidence 1 22244444556875 4332 2478999999653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.75 E-value=1.3e-16 Score=157.92 Aligned_cols=264 Identities=14% Similarity=0.057 Sum_probs=172.9
Q ss_pred EEeecCCeEEEEE---------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEE--e---cCCcCeEEE
Q 009274 235 VNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF--K---GHDHKVMAV 298 (538)
Q Consensus 235 ~~~~~~~~~~i~~---------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~--~---~h~~~v~~l 298 (538)
++...++.+.+|+ +..| ..+.+++|+ |+++++++.|++|++||+.+++..... + +|.+.+.++
T Consensus 36 V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp EEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence 3444455555554 5666 458999999 999999999999999999988754433 2 455666777
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec------------------------------ccCC---------
Q 009274 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN------------------------------EEKD--------- 339 (538)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------~~~~--------- 339 (538)
+|+|++..+++++..++.+++||..+........... ....
T Consensus 115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 7888888777888899999999987643221110000 0000
Q ss_pred -----------ceeeeEEEEeecCCEEEEee-CCCcEEEEECCCCceeEEecC--CCCCeEEEEEe--C-C--EEEEEec
Q 009274 340 -----------WRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC--N-G--VLYSGSR 400 (538)
Q Consensus 340 -----------~~~~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~--~-~--~l~s~s~ 400 (538)
.....-..+++++++++++. .+..+.++|..+++.+..... +........+. + . ..++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG 274 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTT
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCC
Confidence 00001235677788666655 456788999998888776643 22223334433 2 2 2334456
Q ss_pred CCcEEEEECCCC-------ceeEEEecCCCCceEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCc--ceeee----
Q 009274 401 DGTIRLWSLSDH-------SLLTVLEEDSSGAVSSVLSLTAVQHTLVV-------SHESGSIKVWRNDK--FMKSM---- 460 (538)
Q Consensus 401 dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~--~~~~~---- 460 (538)
|+.+.+|+.... +....+..+.... .. ++++|+++++++ ++.|++|++||..+ ...++
T Consensus 275 d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v-~~-v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 275 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGS-LF-IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TCEEEEEECCTTTCTTTBTSEEEEEECSSSCC-CC-EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CceEEEeeccccccccccceEeEEEecCCCce-eE-EEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 888989887653 5667777654333 33 689999999995 45578999999653 23222
Q ss_pred -----ccccceEEEEEe--CCCEEEEE-----eCCCeEEEEecCCCeeEeeee
Q 009274 461 -----QTHKGSVFAVFL--EGKWLFTG-----GWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 461 -----~~h~~~v~~~~~--~~~~l~sg-----s~dg~v~iwd~~~~~~~~~~~ 501 (538)
..|...+.++.| ||++++.+ +.+|.|+|||.++.+......
T Consensus 353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence 235566877766 99877443 357899999999998765443
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.3e-19 Score=165.60 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=79.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|++ |+|+..........+++..||+.|||||++ ++ .....++.++|||||||+||||+||+
T Consensus 140 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l------~~------~~~~~~~~~sDiwS~Gv~l~el~tg~~ 207 (276)
T d1uwha_ 140 DLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI------RM------QDKNPYSFQSDVYAFGIVLYELMTGQL 207 (276)
T ss_dssp TSSEEECCCCCSCC------------CCCCGGGCCHHHH------TT------CSSCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEccccceeeccccCCcccccccccCcccCCHHHH------hc------ccCCCCCchhhhhhhHHHHHHHHHCCC
Confidence 4578999 788777655444446779999999999999 43 11245789999999999999999999
Q ss_pred ccchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.... .+.... ... ...+ .+..........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 208 Pf~~~~~~~~~~~~~-~~~-------~~~p--------~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~ 271 (276)
T d1uwha_ 208 PYSNINNRDQIIFMV-GRG-------YLSP--------DLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 271 (276)
T ss_dssp TTTTCCCHHHHHHHH-HHT-------SCCC--------CGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHH-hcC-------CCCC--------cchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 99875333 111000 000 0000 000001112234888999999999999999999988877764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=2.1e-15 Score=143.09 Aligned_cols=258 Identities=10% Similarity=0.027 Sum_probs=172.4
Q ss_pred eEEeecCCeEEEEE---------ee--cCCCcEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEEecCCc-----C
Q 009274 234 LVNGLSKGNVKFKD---------LQ--GHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDH-----K 294 (538)
Q Consensus 234 ~~~~~~~~~~~i~~---------l~--~h~~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~-----~ 294 (538)
++++..++.+.+|+ +. .+...+.+++|+ |+++ ++++.++.|.+||+.+++.+..+..+.. .
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence 44555555555555 33 244567899998 7776 5667899999999999999998876643 3
Q ss_pred eEEEEEecCCCCEEEEEc-----------CCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCc
Q 009274 295 VMAVVYVDEDQPLCISGD-----------SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (538)
Q Consensus 295 v~~l~~~~~~~~~l~s~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 363 (538)
+..++|+|++..++++.. .+..+.+||..+......+..... ....+++++++++++++. .
T Consensus 84 ~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~--~ 155 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ------ITMLAWARDGSKLYGLGR--D 155 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS------CCCEEECTTSSCEEEESS--S
T ss_pred eeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC------ceEEEEcCCCCEEEEEcC--C
Confidence 457899997765544432 467888999886543333322111 124588999999988865 4
Q ss_pred EEEEECCCCceeEEecCCCCCe------EEEEEe-------------------CCEEEEEecCCcEEEEECCCCceeEEE
Q 009274 364 IKAWSLLDGTLSCTMSGHKSAV------STLAVC-------------------NGVLYSGSRDGTIRLWSLSDHSLLTVL 418 (538)
Q Consensus 364 i~iwd~~~~~~~~~~~~h~~~v------~~l~~~-------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~ 418 (538)
+.+||..+++....+..+.... ....+. ......++.++.+.+||..++......
T Consensus 156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 7889999988877765432110 000000 111222334567999999998876554
Q ss_pred ecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCC
Q 009274 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~ 494 (538)
..++... .....+++++.+++++ ++.+++||..+ .+..+. +...+.++.+ ||++|++++.|+.|++||..+.
T Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 236 VRIMDVF-YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEECSSC-EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ecCCCcc-eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 4433333 3346899999988776 47899999654 344443 4445566665 9999999999999999999998
Q ss_pred eeEeeeecC
Q 009274 495 EFEEDVIPT 503 (538)
Q Consensus 495 ~~~~~~~~~ 503 (538)
+........
T Consensus 312 ~~v~~i~~~ 320 (337)
T d1pbyb_ 312 EKKGQVDLP 320 (337)
T ss_dssp CEEEEEECG
T ss_pred cEEEEEECC
Confidence 876665543
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.7e-18 Score=158.98 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=73.2
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+..... ..++.+|||.|||||++ .+ ..+++++|||||||+||||+||+
T Consensus 150 ~~~vkl~DFG~a~~~~~~~~--~~~~~~gt~~Y~APE~l------~~---------~~~~~~~DIwSlGvilyel~tg~~ 212 (269)
T d2java1 150 KQNVKLGDFGLARILNHDTS--FAKAFVGTPYYMSPEQM------NR---------MSYNEKSDIWSLGCLLYELCALMP 212 (269)
T ss_dssp TSCEEECCHHHHHHC-------------CCCSCCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeeccceeecccCCC--ccccCCCCcccCCHHHH------cC---------CCCChHHHHHhhCHHHHHHhhCCC
Confidence 3568999 77777765432 25679999999999999 44 66889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcC-ccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+. ..+........+. ...++.+++.+||..+|.+||++.++.+
T Consensus 213 Pf~~~~~~~~~---------------------~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~ 265 (269)
T d2java1 213 PFTAFSQKELA---------------------GKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE 265 (269)
T ss_dssp SCCCSSHHHHH---------------------HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 99876544221 0000000001111 1224888999999999999999887654
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.5e-18 Score=157.23 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=77.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+...... ....+||+.|||||++ +| ..+++++|||||||+||+|+||+ |
T Consensus 143 ~~~kl~DFG~a~~~~~~~----~~~~~Gt~~Y~APE~~------~~---------~~~~~~~DiwSlGvilyell~G~~P 203 (263)
T d2j4za1 143 GELKIADFGWSVHAPSSR----RTTLCGTLDYLPPEMI------EG---------RMHDEKVDLWSLGVLCYEFLVGKPP 203 (263)
T ss_dssp SCEEECCCCSCSCCCCCC----CEETTEEGGGCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCEeecccceeeecCCCc----ccccCCCCcccCHHHH------cC---------CCCCchhhhhhHhHHHHHHhcCCCC
Confidence 467898 7777766443 4468999999999999 54 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.+...+.....+.. +. ........+.+++.+||..+|.+||++.++.+
T Consensus 204 f~~~~~~~~~~~i~~~~---------~~------------~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~ 254 (263)
T d2j4za1 204 FEANTYQETYKRISRVE---------FT------------FPDFVTEGARDLISRLLKHNPSQRPMLREVLE 254 (263)
T ss_dssp TCCSSHHHHHHHHHTTC---------CC------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCHHHHHHHHHcCC---------CC------------CCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence 98765552220000000 00 00011224778999999999999999888764
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.4e-18 Score=158.43 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=74.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+.+.........++.+||+.|||||++ .+ ..++.++|||||||+||+|+||+ |
T Consensus 145 ~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~------~~---------~~~~~~~DiwSlGvilyell~g~~P 209 (288)
T d1uu3a_ 145 MHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL------TE---------KSACKSSDLWALGCIIYQLVAGLPP 209 (288)
T ss_dssp SCEEECCCTTCEECC----------CCCCGGGCCHHHH------HT---------CCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred ceEEecccccceecccCCcccccccccCCccccCceee------cc---------CCCCcccceehhhHHHHHHhhCCCC
Confidence 457888 778877655444445678999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.+...+.....+.. . ..+ ......+.+++.+||..+|.+||++.++..
T Consensus 210 f~~~~~~~~~~~i~~~~-----~-~~p---------------~~~s~~~~~li~~~L~~dP~~R~t~~e~~~ 260 (288)
T d1uu3a_ 210 FRAGNEYLIFQKIIKLE-----Y-DFP---------------EKFFPKARDLVEKLLVLDATKRLGCEEMEG 260 (288)
T ss_dssp SCCSSHHHHHHHHHTTC-----C-CCC---------------TTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred CCCcCHHHHHHHHHcCC-----C-CCC---------------ccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence 98765552220000000 0 000 011234778999999999999999887643
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=2.6e-18 Score=160.97 Aligned_cols=115 Identities=19% Similarity=0.125 Sum_probs=66.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+...+... ..+.+||+.|||||++ +| ..+++++|||||||+||+|++|+
T Consensus 146 ~~~vkl~DFG~a~~~~~~~~---~~~~~GT~~y~APE~~------~~---------~~~~~~~DiwSlGvilyell~g~~ 207 (307)
T d1a06a_ 146 DSKIMISDFGLSKMEDPGSV---LSTACGTPGYVAPEVL------AQ---------KPYSKAVDCWSIGVIAYILLCGYP 207 (307)
T ss_dssp TCCEEECCC---------------------CTTSCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CceEEEeccceeEEccCCCe---eeeeeeCccccCcHHH------cC---------CCCCcHHHhhhhhHHHHHHHhCCC
Confidence 3567888 77877765543 5578999999999999 44 56889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+.....+.. ..... .........+.+++.+||..+|.+||++.++.+
T Consensus 208 Pf~~~~~~~~~~~i~~~~------~~~~~-----------~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 263 (307)
T d1a06a_ 208 PFYDENDAKLFEQILKAE------YEFDS-----------PYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ 263 (307)
T ss_dssp SCCCSSHHHHHHHHHTTC------CCCCT-----------TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCCCHHHHHHHHhccC------CCCCC-----------ccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 998764442210000000 00000 000111224778999999999999999887755
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.1e-18 Score=155.73 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=76.8
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+.+.........++.+|||.|||||++ .+ ...++.++|||||||+||||+||+ |
T Consensus 140 ~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~------~~--------~~~~~~~~DiwSlGvilyeml~G~~p 205 (271)
T d1nvra_ 140 DNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL------KR--------REFHAEPVDVWSCGIVLTAMLAGELP 205 (271)
T ss_dssp CCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHH------HC--------SSBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEccchhheeeccCCccccccceeeCcCccCHhHh------cC--------CCCCCCceeeeHhHHHHHHHHhCCCC
Confidence 568998 778877654433346679999999999999 43 122467899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|................. .... .......++.+++.+||..+|.+||++.++.+
T Consensus 206 f~~~~~~~~~~~~~~~~~------~~~~------------~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 259 (271)
T d1nvra_ 206 WDQPSDSCQEYSDWKEKK------TYLN------------PWKKIDSAPLALLHKILVENPSARITIPDIKK 259 (271)
T ss_dssp CSSSSTTSHHHHHHHTTC------TTST------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCChHHHHHHHHhcCC------CCCC------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 976533311100000000 0000 00011123678999999999999999877643
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.6e-17 Score=157.32 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=83.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|++ |+|+............+..||+.|||||++ .+ ..+++++|||||||+||||+| |+
T Consensus 200 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l------~~---------~~~~~~~DiwS~Gvil~emlt~g~ 264 (325)
T d1rjba_ 200 GKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL------FE---------GIYTIKSDVWSYGILLWEIFSLGV 264 (325)
T ss_dssp TTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCeEEEeeccccccccCCCceeeeccccCCCccCChHHH------cC---------CCCCcceeccchhHHHHHHHhCCC
Confidence 4579999 888888776655445678999999999999 22 568899999999999999998 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.+....... .+. ... ..+ +........+.+++.+||+.+|.+||++.++.+.|.
T Consensus 265 ~Pf~~~~~~~~~~~~~-~~~------~~~-------------~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 265 NPYPGIPVDANFYKLI-QNG------FKM-------------DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp CSSTTCCCSHHHHHHH-HTT------CCC-------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH-hcC------CCC-------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence 99875333111 000 000 000 000112234788999999999999999999887764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=4.9e-14 Score=134.02 Aligned_cols=269 Identities=10% Similarity=0.028 Sum_probs=178.9
Q ss_pred eccCcceeEEeecCCeEEEEEee----------cCCCcEEEEEEc--CCEE-EEEeCCCcEEEEeCCCCceEEEEecCC-
Q 009274 227 AAGGVKDLVNGLSKGNVKFKDLQ----------GHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHD- 292 (538)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~i~~l~----------~h~~~V~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~- 292 (538)
++.+++.++++..++.+.+|++. .|...+.+++|+ |+++ ++++.++.|++||+.+++.+..+....
T Consensus 4 ~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~ 83 (346)
T d1jmxb_ 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 83 (346)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence 45677788888888888887742 355667899998 7776 556678999999999999988876433
Q ss_pred -----cCeEEEEEecCCCCEEEEE-----------cCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEE
Q 009274 293 -----HKVMAVVYVDEDQPLCISG-----------DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY 356 (538)
Q Consensus 293 -----~~v~~l~~~~~~~~~l~s~-----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 356 (538)
..+..++|+|++..++++. ..++.+.+|+..++.....+........ ......++++..++
T Consensus 84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ---VYLMRAADDGSLYV 160 (346)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS---CCCEEECTTSCEEE
T ss_pred ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCc---eEEEEecCCCEEEE
Confidence 2356789999777665543 2578899999887765555444332221 12334555565554
Q ss_pred EeeCCCcEEEEECCCCceeEEecCCCCC---------------------eEEEEE----e--CCEEEEEecCCcEEEEEC
Q 009274 357 TGSGDRTIKAWSLLDGTLSCTMSGHKSA---------------------VSTLAV----C--NGVLYSGSRDGTIRLWSL 409 (538)
Q Consensus 357 sg~~dg~i~iwd~~~~~~~~~~~~h~~~---------------------v~~l~~----~--~~~l~s~s~dg~i~iwd~ 409 (538)
++ +.+.+||+.+++.+..+..+... +..... . ...+.++..++.+.+||.
T Consensus 161 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 161 AG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp ES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred eC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence 43 46899999998887776543211 110000 0 124455566778999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe--CCCEEEEEeCCCe
Q 009274 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKT 485 (538)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~--~~~~l~sgs~dg~ 485 (538)
.++.........+...... ..+++++..++.... +.+.+||... .+..+. +...+.++++ ||++|++++.|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~ 314 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFT-GLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND 314 (346)
T ss_dssp TTCCEEEEEEEECSSCEEE-EEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred CCCceEEEEeecccceeEE-EEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 9988766655444444444 467777777766654 5799999543 344443 2334555554 9999999999999
Q ss_pred EEEEecCCCeeEeeeecCC
Q 009274 486 VSVQELAGDEFEEDVIPTG 504 (538)
Q Consensus 486 v~iwd~~~~~~~~~~~~~~ 504 (538)
|++||+++.+.........
T Consensus 315 v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 315 LAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp EEEEETTTTEEEEEEECSS
T ss_pred EEEEECccCCEEEEEECCC
Confidence 9999999998876665443
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=7e-18 Score=154.86 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=74.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+.+|+. |+|+..... ..++.+|||.|||||++ . +++++++|||||||+||||++|+ |
T Consensus 152 ~~~Kl~DFGla~~~~~~----~~~~~~GT~~Y~aPE~~------~----------~~~~~~~DIwSlGvilyel~~g~~P 211 (270)
T d1t4ha_ 152 GSVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMY------E----------EKYDESVDVYAFGMCMLEMATSEYP 211 (270)
T ss_dssp SCEEECCTTGGGGCCTT----SBEESCSSCCCCCGGGG------G----------TCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeecCcceeccCC----ccCCcccCccccCHHHh------C----------CCCCCcCchhhHHHHHHHHHHCCCC
Confidence 468998 777654433 24578999999999988 2 35889999999999999999999 9
Q ss_pred cchhhhh-heeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|...... .+.... . ....+. .......+++.+++.+||..+|++||++.++.+
T Consensus 212 f~~~~~~~~~~~~i-~-------~~~~~~-----------~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~ 265 (270)
T d1t4ha_ 212 YSECQNAAQIYRRV-T-------SGVKPA-----------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 265 (270)
T ss_dssp TTTCSSHHHHHHHH-T-------TTCCCG-----------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCcccHHHHHHHH-H-------cCCCCc-----------ccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence 9764222 111000 0 000000 001112334788999999999999999887654
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.1e-17 Score=150.71 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=78.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+|+.+.+.... ....+|||.|||||++ .+ ..+++++|||||||+||+|+||+
T Consensus 152 ~~~vkl~DFG~a~~~~~~~~~--~~~~~gt~~Y~aPE~~------~~---------~~~~~~~DiwSlGvilyemltG~~ 214 (293)
T d1yhwa1 152 DGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVV------TR---------KAYGPKVDIWSLGIMAIEMIEGEP 214 (293)
T ss_dssp TCCEEECCCTTCEECCSTTCC--BCCCCSCGGGCCHHHH------SS---------SCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEeeccchhheeecccccc--ccccccCCCccChhhh------cC---------CCCCchhceehHhHHHHHHhhCCC
Confidence 3567998 778887654332 5578999999999999 44 66889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+............. ..+ .. .........+.+++.+||..+|.+||++.++.+
T Consensus 215 Pf~~~~~~~~~~~~~~~--------~~~--------~~--~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 269 (293)
T d1yhwa1 215 PYLNENPLRALYLIATN--------GTP--------EL--QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (293)
T ss_dssp TTTTSCHHHHHHHHHHH--------CSC--------CC--SSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHHhC--------CCC--------CC--CCcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 99875443111000000 000 00 000011123778999999999999999887654
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.9e-17 Score=153.01 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=81.3
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|+. |+|+...........++..||+.|||||++ .+ ..++.++|||||||+||||+||.
T Consensus 170 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l------~~---------~~~~~~sDiwS~Gvil~ellt~~~ 234 (299)
T d1ywna1 170 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI------FD---------RVYTIQSDVWSFGVLLWEIFSLGA 234 (299)
T ss_dssp GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEccCcchhhccccccccccCceeeCccccchhHh------hc---------CCCCcccceeehHHHHHHHHhCCC
Confidence 3578999 888877666554445678999999999999 32 56789999999999999999976
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+....... . ..+..-..... ......+.+++.+||+.+|.+||++.++.+.+.++
T Consensus 235 ~p~~~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~i 294 (299)
T d1ywna1 235 SPYPGVKIDEEF-------------C-------RRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 294 (299)
T ss_dssp CSSTTCCCSHHH-------------H-------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH-------------H-------HHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 78764322100 0 00000000001 11223478899999999999999999999988877
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 295 l 295 (299)
T d1ywna1 295 L 295 (299)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.3e-17 Score=149.58 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=76.0
Q ss_pred eeeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 11 KSVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
+..+|++ |+|+.+.+.... .......||+.|||||++ ++ ..+++++|||||||+||||+||.
T Consensus 146 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l------~~---------~~~~~~sDI~S~Gvil~el~t~~ 210 (283)
T d1mqba_ 146 NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI------SY---------RKFTSASDVWSFGIVMWEVMTYG 210 (283)
T ss_dssp TCCEEECCCCC-----------------CCCGGGSCHHHH------HS---------CCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHH------cc---------CCCCCcccccccHHHHHHHHhCC
Confidence 4579999 888877654332 223457899999999999 43 67889999999999999999976
Q ss_pred -ccch-hhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 -QFTK-ELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 -pf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.. .....+. ..+........+ .....+.+++.+||..+|++||++.++.+.+.+
T Consensus 211 ~~~~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~ 269 (283)
T d1mqba_ 211 ERPYWELSNHEVM---------------------KAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 269 (283)
T ss_dssp CCTTTTCCHHHHH---------------------HHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCccccCCHHHHH---------------------HHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHH
Confidence 5443 3222111 000000000001 122347889999999999999999999998888
Q ss_pred hhcCC
Q 009274 165 LIIKP 169 (538)
Q Consensus 165 l~~~~ 169 (538)
+...|
T Consensus 270 l~~~p 274 (283)
T d1mqba_ 270 LIRAP 274 (283)
T ss_dssp HHHSG
T ss_pred HhhCc
Confidence 77554
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=4.1e-17 Score=152.29 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=75.0
Q ss_pred eeeeeec--cccccccccchhhhh---hhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFL---SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~---~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
+..+|++ |+|+.+.+....... ....||+.|||||++ .+ ..+++++|||||||+||||+|
T Consensus 164 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~---------~~~~~~sDvwS~Gvvl~el~t 228 (299)
T d1jpaa_ 164 NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAI------QY---------RKFTSASDVWSYGIVMWEVMS 228 (299)
T ss_dssp TCCEEECCC-----------------------CGGGSCHHHH------HS---------CCCCHHHHHHHHHHHHHHHHT
T ss_pred CCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHH------hc---------CCCCcccccccchHHHHHHHh
Confidence 4579999 788877654332111 236789999999998 33 678899999999999999998
Q ss_pred -cC-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 86 -GE-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 86 -g~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
|+ ||.+.....+. .+. .. ..++ ........+.+++.+||+.+|.+||++.++.+.+
T Consensus 229 ~g~~Pf~~~~~~~~~~~i~--~~------~~~~-------------~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L 287 (299)
T d1jpaa_ 229 YGERPYWDMTNQDVINAIE--QD------YRLP-------------PPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTL 287 (299)
T ss_dssp TSCCTTTTCCHHHHHHHHH--TT------CCCC-------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHH--cC------CCCC-------------CCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence 88 99876444221 000 00 0000 0011223478899999999999999999999988
Q ss_pred HHhhcCC
Q 009274 163 RELIIKP 169 (538)
Q Consensus 163 ~~l~~~~ 169 (538)
.++++.|
T Consensus 288 ~~~l~~p 294 (299)
T d1jpaa_ 288 DKMIRNP 294 (299)
T ss_dssp HHHHHSG
T ss_pred HHHhcCh
Confidence 8877543
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-17 Score=153.53 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred eeeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC
Q 009274 10 TKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (538)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~ 87 (538)
.+...|+. |+|+.+..... ..+..||+.|||||++ ++ ..++.++|||||||+||+|+||+
T Consensus 152 ~~~~vkl~DfG~a~~~~~~~~---~~~~~~t~~y~APE~~------~~---------~~~~~~~DiwSlGvilyell~g~ 213 (293)
T d1jksa_ 152 PKPRIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIV------NY---------EPLGLEADMWSIGVITYILLSGA 213 (293)
T ss_dssp SSCCEEECCCTTCEECTTSCB---CSCCCCCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSS
T ss_pred cccceEecchhhhhhcCCCcc---ccccCCCCcccCHHHH------cC---------CCCCCcccchhhhHHHHHHHcCC
Confidence 34467888 77877765432 4578999999999999 44 56889999999999999999999
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+. .+. .. ......... ......+.+++.+||..+|.+||++.++.+
T Consensus 214 ~Pf~~~~~~~~~~~i~---------~~-~~~~~~~~~--------~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 270 (293)
T d1jksa_ 214 SPFLGDTKQETLANVS---------AV-NYEFEDEYF--------SNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 270 (293)
T ss_dssp CSSCCSSHHHHHHHHH---------TT-CCCCCHHHH--------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHH---------hc-CCCCCchhc--------CCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 99876554222 100 00 000000000 112223778999999999999999888755
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.2e-17 Score=151.09 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=78.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+....... ..++.+|||.|||||++ .+ +......+++++|||||||+||+|+||+
T Consensus 146 ~~~~Kl~DFG~a~~~~~~~~--~~~~~~Gt~~y~APE~l------~~----~~~~~~~y~~k~DiwSlGvilyemltg~~ 213 (288)
T d2jfla1 146 DGDIKLADFGVSAKNTRTIQ--RRDSFIGTPYWMAPEVV------MC----ETSKDRPYDYKADVWSLGITLIEMAEIEP 213 (288)
T ss_dssp TSCEEECCCTTCEECHHHHH--HHTCCCSCCTTCCHHHH------TT----CSTTTSSTTTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEechhhhccCCCcc--cccccccccccCCHHHH------hh----cccCCCCCChhhhHHHHHHHHHHHhhCCC
Confidence 3467998 67766654422 25579999999999998 32 0112356789999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+. .+. +. ..+.. ........++.+++.+||+.+|.+||++.++.+
T Consensus 214 Pf~~~~~~~~~~~i~-~~--------~~~~~----------~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~ 268 (288)
T d2jfla1 214 PHHELNPMRVLLKIA-KS--------EPPTL----------AQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ 268 (288)
T ss_dssp TTTTSCGGGHHHHHH-HS--------CCCCC----------SSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHH-cC--------CCCCC----------CccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 99876544222 000 00 00000 000011224778999999999999999887654
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.62 E-value=1.8e-17 Score=157.85 Aligned_cols=113 Identities=24% Similarity=0.251 Sum_probs=78.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+.+..... ..+..||+.|||||++ .| ..++.++|||||||+||+|+||+ |
T Consensus 163 ~~vkL~DFG~a~~~~~~~~---~~~~~gT~~Y~aPEv~------~~---------~~~~~~~DiwSlGvilyell~G~~P 224 (350)
T d1koaa2 163 NELKLIDFGLTAHLDPKQS---VKVTTGTAEFAAPEVA------EG---------KPVGYYTDMWSVGVLSYILLSGLSP 224 (350)
T ss_dssp CCEEECCCTTCEECCTTSC---EEEECSCTTTCCHHHH------HT---------CCBCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CeEEEeecchheecccccc---cceecCcccccCHHHH------cC---------CCCChhHhhhhhhHHHHHHHhCCCC
Confidence 568998 77887765543 4579999999999999 44 56789999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.+...+. .+.. .. ..... .........+.+++.+||..+|.+||++.++.+
T Consensus 225 f~~~~~~~~~~~i~~-~~------~~~~~-----------~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 279 (350)
T d1koaa2 225 FGGENDDETLRNVKS-CD------WNMDD-----------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 279 (350)
T ss_dssp SCCSSHHHHHHHHHH-TC------CCSCC-----------GGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred CCCCCHHHHHHHHHh-CC------CCCCc-----------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9876544222 0000 00 00000 000011123778999999999999999888765
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.8e-17 Score=154.41 Aligned_cols=64 Identities=22% Similarity=0.432 Sum_probs=51.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+...+.. .++++||+.|||||++ .| ..+++++|||||||+||||++|+
T Consensus 141 ~~~vkl~DFGla~~~~~~~----~~~~~GT~~Y~APEvl------~~---------~~y~~~~DiWSlGvil~ell~G~~ 201 (322)
T d1s9ja_ 141 RGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVEMAVGRY 201 (322)
T ss_dssp TCCEEECCCCCCHHHHHHT----C---CCSSCCCCHHHH------HC---------SCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeeCCCccccCCCc----cccccCCccccCchHH------cC---------CCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3568999 7888766442 4578999999999999 54 67889999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||.+.+
T Consensus 202 Pf~~~~ 207 (322)
T d1s9ja_ 202 PIPPPD 207 (322)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 998753
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=7.6e-17 Score=151.46 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=73.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+.+. .++++|||.|||||++ +| ..+++++|||||||+||+|+||+
T Consensus 140 ~g~vkL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE~l------~~---------~~y~~~~DiwSlGvilyemltG~~ 199 (316)
T d1fota_ 140 NGHIKITDFGFAKYVPDV-----TYTLCGTPDYIAPEVV------ST---------KPYNKSIDWWSFGILIYEMLAGYT 199 (316)
T ss_dssp TSCEEECCCSSCEECSSC-----BCCCCSCTTTCCHHHH------TT---------CCBCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEecCccceEeccc-----cccccCcccccCHHHH------cC---------CCCCchhhccccchhHHHHHhCCC
Confidence 3568998 778877655 3468999999999999 44 56889999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||.+.+...+........ . ........++.+++.+||.++|.+|++
T Consensus 200 Pf~~~~~~~~~~~i~~~~---------~------------~~p~~~s~~~~~li~~~L~~dp~~R~~ 245 (316)
T d1fota_ 200 PFYDSNTMKTYEKILNAE---------L------------RFPPFFNEDVKDLLSRLITRDLSQRLG 245 (316)
T ss_dssp TTCCSSHHHHHHHHHHCC---------C------------CCCTTSCHHHHHHHHHHTCSCTTTCTT
T ss_pred CCCCcCHHHHHHHHHcCC---------C------------CCCCCCCHHHHHHHHHHhhhCHHhccc
Confidence 998765542220000000 0 000111224778999999999999974
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.62 E-value=8.6e-13 Score=127.13 Aligned_cols=278 Identities=12% Similarity=-0.017 Sum_probs=176.7
Q ss_pred ecCCCcEEEEEEc--CCEEEEE-----eCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEE---------c
Q 009274 249 QGHRDCVTGLAVG--GGFLFSS-----SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG---------D 312 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~---------~ 312 (538)
..|..++.+++++ ++.++.. +.++.|.+||..+++.+.++..+..+ .++|+|++..++++. .
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 4578888999998 7776654 23467999999999999998876654 789999777665543 3
Q ss_pred CCCcEEEEEccCCCCCcceeeecccCC--ceeeeEEEEeecCCEEEEe--eCCCcEEEEECCCCceeEEecCCCCCeEEE
Q 009274 313 SGGGIFVWSFSFPLGHEPLKKWNEEKD--WRYSGIHALTTSGRYLYTG--SGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388 (538)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 388 (538)
.++.|.+||..+++....+........ ........++++++.++.. ..++.+.+|+..+.+...... ...++
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCY 170 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cceeE
Confidence 468899999987765433322111100 0011235788888865544 446788999988776654443 34567
Q ss_pred EEe--CC-EEEEEecCCcEEEEECCCCceeEEEecCC----CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc----e
Q 009274 389 AVC--NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDS----SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----M 457 (538)
Q Consensus 389 ~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~ 457 (538)
.++ ++ .+++.+.|+.+.+||...++......... .........+.+++. ++..+.++.+.+|+.... .
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~ 249 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEE
Confidence 777 33 67789999999999999888766554321 112222234555554 455567888999885431 1
Q ss_pred eeeccccc------------eEEEEEe----------CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEE
Q 009274 458 KSMQTHKG------------SVFAVFL----------EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL 515 (538)
Q Consensus 458 ~~~~~h~~------------~v~~~~~----------~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (538)
.....+.. ...+..+ ++..+++...++.+.+||..+++......... ......
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~-----~~~~~a 324 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-----DVDAIS 324 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC-----CeeEEE
Confidence 11111111 1112222 44455667778899999999988766554322 233344
Q ss_pred EEeCCE--E-EEEECCCeEEEEEcCC
Q 009274 516 LYWQGK--L-FVGCADRTVKVYYYGK 538 (538)
Q Consensus 516 ~~~~~~--l-~sg~~dg~v~vw~~~~ 538 (538)
+.+|++ | ++++.|+.|++||..+
T Consensus 325 ~spDG~~~l~vt~~~d~~v~v~D~~t 350 (373)
T d2madh_ 325 VAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEECCC
Confidence 556764 3 4688999999999753
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.9e-17 Score=156.94 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=79.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+....... ....+|||.|||||++ .| ..+++++|||||||+||+|+||+
T Consensus 150 ~~~~Kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~y~~~~DiwSlGvily~lltg~~ 211 (335)
T d2ozaa1 150 NAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEVL------GP---------EKYDKSCDMWSLGVIMYILLCGYP 211 (335)
T ss_dssp TCCEEECCCTTCEECCCCCC---CCCCSCCCSSCCCCCC------CG---------GGGSHHHHHHHHHHHHHHHTTSSC
T ss_pred cccccccccceeeeccCCCc---cccccCCcccCCcHHH------cC---------CCCCHHHHHHhhchhHHHHhhCCC
Confidence 4578999 77887766543 4578999999999998 43 56889999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+. .+........ ...+... .+.++ .++.+++.+||..+|.+||++.++.+
T Consensus 212 Pf~~~~~~~~~~~~~~~i~~~~--~~~~~~~----~~~~s--------~~~~~li~~~L~~dP~~R~s~~eil~ 271 (335)
T d2ozaa1 212 PFYSNHGLAISPGMKTRIRMGQ--YEFPNPE----WSEVS--------EEVKMLIRNLLKTEPTQRMTITEFMN 271 (335)
T ss_dssp SCEETTCC--------CCCSCS--SSCCTTH----HHHSC--------HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCC--CCCCCcc----cccCC--------HHHHHHHHHHccCChhHCcCHHHHHc
Confidence 99886543221 0000000000 0111111 11111 13778999999999999999888765
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.8e-17 Score=146.97 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=71.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc-C
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG-E 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg-~ 87 (538)
+..+|+. |+|+.+.+.... ......||+.|||||++ .+ ..++.++|||||||+||||+|+ +
T Consensus 137 ~~~~Kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~l------~~---------~~~~~k~DVwS~Gvil~el~t~~~ 200 (263)
T d1sm2a_ 137 NQVIKVSDFGMTRFVLDDQYT-SSTGTKFPVKWASPEVF------SF---------SRYSSKSDVWSFGVLMWEVFSEGK 200 (263)
T ss_dssp GGCEEECSCC-------------------CTTSCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCeEecccchheeccCCCce-eecceecCcccCChHHh------cC---------CCCCchhhhcchHHHHHHHHHCCC
Confidence 4578999 777777655432 24468899999999999 44 6788999999999999999995 4
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. ..+..-..... .....++.+++.+||..+|.+||++.++.+.+.++
T Consensus 201 ~~~~~~~~~~~~---------------------~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i 259 (263)
T d1sm2a_ 201 IPYENRSNSEVV---------------------EDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259 (263)
T ss_dssp CTTCSCCHHHHH---------------------HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH---------------------HHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 55544333111 00000000001 11223478899999999999999999999888776
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 260 ~ 260 (263)
T d1sm2a_ 260 A 260 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.3e-17 Score=149.68 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=82.8
Q ss_pred eeeeeec--cccccccccchhhh-hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVGLF-LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
+..+|+. |+|+.+........ .+...||+.|||||++ .+ ..+++++|||||||+||||+| |
T Consensus 145 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~ksDVwS~Gv~l~E~lt~G 209 (285)
T d1u59a_ 145 RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI------NF---------RKFSSRSDVWSYGVTMWEALSYG 209 (285)
T ss_dssp TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTS
T ss_pred CCceeeccchhhhcccccccccccccccccCccccChHHH------hC---------CCCCccchhhcchHHHHHHHhCC
Confidence 4578999 78887765433221 3357899999999999 32 567899999999999999998 8
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.+.....+. .+. +. ..+ + .......++.+++.+||+.+|.+||+..++.+.++.
T Consensus 210 ~~Pf~~~~~~~~~~~i~-~~--------~~~--------~----~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~ 268 (285)
T d1u59a_ 210 QKPYKKMKGPEVMAFIE-QG--------KRM--------E----CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRA 268 (285)
T ss_dssp CCTTTTCCTHHHHHHHH-TT--------CCC--------C----CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH-cC--------CCC--------C----CCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence 9 99875443211 000 00 000 0 001122347889999999999999999888877765
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
.+
T Consensus 269 ~~ 270 (285)
T d1u59a_ 269 CY 270 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=9.5e-17 Score=152.97 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=73.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+... ..+++|||.|||||++ .| ..+++++|||||||+||+|+||+
T Consensus 177 ~g~ikL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE~~------~~---------~~~~~~~DiwSlGvilyemltG~~ 236 (350)
T d1rdqe_ 177 QGYIQVTDFGFAKRVKGR-----TWTLCGTPEALAPEII------LS---------KGYNKAVDWWALGVLIYEMAAGYP 236 (350)
T ss_dssp TSCEEECCCTTCEECSSC-----BCCCEECGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEeeeceeeeecccc-----cccccCccccCCHHHH------cC---------CCCCccccccchhHHHHHHHhCCC
Confidence 3567898 888888755 3468999999999999 44 56789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
||.+.+...+...... ..+ ........++.+++.+||..+|.+|+.
T Consensus 237 Pf~~~~~~~~~~~i~~---------~~~------------~~p~~~s~~~~~li~~~L~~dP~kR~~ 282 (350)
T d1rdqe_ 237 PFFADQPIQIYEKIVS---------GKV------------RFPSHFSSDLKDLLRNLLQVDLTKRFG 282 (350)
T ss_dssp SSCCSSHHHHHHHHHH---------CCC------------CCCTTCCHHHHHHHHHHSCSCTTTCTT
T ss_pred CCCCcCHHHHHHHHhc---------CCC------------CCCccCCHHHHHHHHHHhhhCHHhccc
Confidence 9988655422200000 000 000112234788999999999999963
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.1e-13 Score=128.99 Aligned_cols=270 Identities=14% Similarity=0.157 Sum_probs=168.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEE--ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCce
Q 009274 264 FLFSSSFDKSIHVWSLKDFSHVHTF--KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (538)
Q Consensus 264 ~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (538)
.+++++.|++|++|++++...+..+ ..|.+.+..++|+|++..+++++..|+.|++|++.................
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~-- 83 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-- 83 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS--
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC--
Confidence 3577889999999999765443333 358889999999998887778888899999999986554433322211111
Q ss_pred eeeEEEEeecCCEEEEeeC-CCcEEEEECCCCceeEE--ecCCCCCeEEEEEe--CCEEEEEe-cCCcEEEEECCCCcee
Q 009274 342 YSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCT--MSGHKSAVSTLAVC--NGVLYSGS-RDGTIRLWSLSDHSLL 415 (538)
Q Consensus 342 ~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~~~~~~ 415 (538)
.....+++|||+++++++. ++.|.+|+......... ...+...+.++.++ ++++++++ .+..|.+|+.......
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 163 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence 1123689999998888875 67899998876654333 34567778888998 44556555 5567999998775433
Q ss_pred EEEe----cCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCcc------eeeec------cccceEE--EEEeCCCE
Q 009274 416 TVLE----EDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF------MKSMQ------THKGSVF--AVFLEGKW 476 (538)
Q Consensus 416 ~~~~----~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~~~~------~h~~~v~--~~~~~~~~ 476 (538)
.... ....+.....+.+++++..++... ..+...+|+.... ..... ....... .+++++++
T Consensus 164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence 2211 111222334478999998877665 4567778774321 11111 0112223 34457876
Q ss_pred EEEE-eCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EEEEE-CCCeEEEEEc
Q 009274 477 LFTG-GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGC-ADRTVKVYYY 536 (538)
Q Consensus 477 l~sg-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~-~dg~v~vw~~ 536 (538)
++.. ..++.+.+|++.............. ....+....+.+||+ |++++ .++.|++|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 244 LYACDRTASLITVFSVSEDGSVLSKEGFQP-TETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred eeeecccCCeEEEEEEcCCCCEEEEEEEeC-CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 6554 5578999999875432221111100 012233445566776 56654 5789999976
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=7e-17 Score=149.43 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=63.6
Q ss_pred hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-ccchhhhhheeeccccccCcchh
Q 009274 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (538)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (538)
....+||+.|||||++ +| ..+++++|||||||+||+|+||+ ||.+.+...+.....
T Consensus 171 ~~~~~Gt~~Y~aPE~~------~~---------~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~-------- 227 (277)
T d1o6ya_ 171 TAAVIGTAQYLSPEQA------RG---------DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHV-------- 227 (277)
T ss_dssp --------TTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH--------
T ss_pred cccccCcccccCHHHH------cC---------CCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHH--------
Confidence 4468999999999999 44 56889999999999999999999 998765542220000
Q ss_pred hcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcc-hhhHHHHHHHh
Q 009274 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL-LTNVWKCIREL 165 (538)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~-~~~~~~~l~~l 165 (538)
...+.. +..........+.+++.+||+.+|.+||+ +.++...+.++
T Consensus 228 -~~~~~~--------~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~ 274 (277)
T d1o6ya_ 228 -REDPIP--------PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 274 (277)
T ss_dssp -HCCCCC--------GGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred -hcCCCC--------CchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence 000000 00011112234888999999999999995 66776666554
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1e-16 Score=147.79 Aligned_cols=119 Identities=14% Similarity=0.172 Sum_probs=78.9
Q ss_pred eeeeeec--cccccccccchhh-hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVGL-FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
+..+|+. |+|+.+....... ......||+.|||||++ .+ ..++.++|||||||+||||+| |
T Consensus 143 ~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l------~~---------~~~~~~sDiwS~Gv~l~ellt~g 207 (277)
T d1xbba_ 143 QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI------NY---------YKFSSKSDVWSFGVLMWEAFSYG 207 (277)
T ss_dssp TTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTT
T ss_pred cCcccccchhhhhhccccccccccccccCCCceecCchhh------cC---------CCCCchhhhccchhhhhHHhhCC
Confidence 4578888 7887765443221 23357899999999999 22 567899999999999999998 8
Q ss_pred C-ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.+.....+. .+. +.. .+. .......++.+++.+||+.+|.+||+..++.+.+..
T Consensus 208 ~~Pf~~~~~~~~~~~i~-~~~--------~~~------------~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~ 266 (277)
T d1xbba_ 208 QKPYRGMKGSEVTAMLE-KGE--------RMG------------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRN 266 (277)
T ss_dssp CCSSTTCCHHHHHHHHH-TTC--------CCC------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH-cCC--------CCC------------CCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhC
Confidence 9 99875444221 000 000 000 001122347889999999999999999888776655
Q ss_pred h
Q 009274 165 L 165 (538)
Q Consensus 165 l 165 (538)
.
T Consensus 267 ~ 267 (277)
T d1xbba_ 267 Y 267 (277)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=9.1e-17 Score=151.99 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=76.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+........ ..+++|||.|||||++ .| ..+++++|||||||+||||++|+
T Consensus 141 ~g~vkl~DFG~a~~~~~~~~~--~~~~~GT~~Y~aPE~~------~~---------~~y~~~~DiwSlGvilyeml~G~~ 203 (337)
T d1o6la_ 141 DGHIKITDFGLCKEGISDGAT--MKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRL 203 (337)
T ss_dssp TSCEEECCCTTCBCSCCTTCC--BCCCEECGGGCCGGGG------SS---------SCBCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeecccccccccCCcc--cccceeCHHHhhhhhc------cC---------CCCChhhcccchhhHHHHHHHCCC
Confidence 3567898 778776544332 5679999999999998 44 67899999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.+.+...+...... ..+..+ ....+++.+++.+||.++|.+|+..
T Consensus 204 pf~~~~~~~~~~~i~~---------~~~~~p------------~~~s~~~~dli~~~L~~dP~~R~~~ 250 (337)
T d1o6la_ 204 PFYNQDHERLFELILM---------EEIRFP------------RTLSPEAKSLLAGLLKKDPKQRLGG 250 (337)
T ss_dssp SSCCSSHHHHHHHHHH---------CCCCCC------------TTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred CCCCcCHHHHHHHHhc---------CCCCCC------------ccCCHHHHHHHHhhccCCchhhccc
Confidence 9988765532200000 000000 0112247789999999999999973
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.1e-16 Score=149.73 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=84.0
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|++ |+|+.+.+.......++..||+.|||||++ ++ ..+++++|||||||+||||++|.
T Consensus 176 ~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~---------~~~t~ksDVwS~Gvvl~ell~~~~ 240 (301)
T d1lufa_ 176 NMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI------FY---------NRYTTESDVWAYGVVLWEIFSYGL 240 (301)
T ss_dssp GGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHH------cc---------CCCChhhhhccchhhHHHHHccCC
Confidence 3579999 788877666554445678999999999999 33 56889999999999999999996
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+.. . . .+. .......++.+++.+||+.+|.+||++.++.+.+.++
T Consensus 241 ~p~~~~~~~e~~~~v~~--~-------~--------~~~----~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i 299 (301)
T d1lufa_ 241 QPYYGMAHEEVIYYVRD--G-------N--------ILA----CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 299 (301)
T ss_dssp CTTTTSCHHHHHHHHHT--T-------C--------CCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHc--C-------C--------CCC----CCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 78776544222 0000 0 0 000 0011223488899999999999999999998887765
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 300 ~ 300 (301)
T d1lufa_ 300 C 300 (301)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8.8e-17 Score=151.63 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=80.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+|+.+...+.........||+.|||||++ .+ +.++.++|||||||+||||+| |+
T Consensus 147 ~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l------~~---------~~~~~~sDvwS~Gvil~el~t~g~ 211 (317)
T d1xkka_ 147 PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI------LH---------RIYTHQSDVWSYGVTVWELMTFGS 211 (317)
T ss_dssp TTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCeEeeccccceecccccccccccccccCccccChHHH------hc---------CCCChhhhhhhHHHHHHHHHHCCC
Confidence 3478999 778877665544445567899999999999 33 568899999999999999999 67
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHh-hhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.+.....+.. . +..-... ........+.+++.+||+.+|.+||++.++...+.++
T Consensus 212 ~p~~~~~~~~~~~-----------------~----i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~ 270 (317)
T d1xkka_ 212 KPYDGIPASEISS-----------------I----LEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 270 (317)
T ss_dssp CTTTTSCGGGHHH-----------------H----HHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHH-----------------H----HHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHH
Confidence 888754442110 0 0000000 0011223478899999999999999999988877766
Q ss_pred hc
Q 009274 166 II 167 (538)
Q Consensus 166 ~~ 167 (538)
..
T Consensus 271 ~~ 272 (317)
T d1xkka_ 271 AR 272 (317)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=2.7e-16 Score=147.09 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=76.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|++ |+|+..... ...+|||.|||||++ .| .....|+.++|||||||+||||++|+
T Consensus 151 ~~~~Kl~DFG~a~~~~~~------~~~~GT~~Y~APE~~------~~------~~~~~y~~~~DiwSlGvilyel~~g~~ 212 (309)
T d1u5ra_ 151 PGLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVI------LA------MDEGQYDGKVDVWSLGITCIELAERKP 212 (309)
T ss_dssp TTEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHH------TT------TTSCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeecccccccCCC------CccccCccccCHHHH------hc------cCCCCcCchhhhhhHHHHHHHHHHCCC
Confidence 3578999 677665533 358999999999999 43 12356889999999999999999999
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.....+. .+. ....+. .........+.+++.+||..+|.+||++.++.+
T Consensus 213 Pf~~~~~~~~~~~i~---------~~~~~~-----------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 266 (309)
T d1u5ra_ 213 PLFNMNAMSALYHIA---------QNESPA-----------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 266 (309)
T ss_dssp TTTTSCHHHHHHHHH---------HSCCCC-----------CSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHH---------hCCCCC-----------CCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence 99875443111 000 000000 000011224788999999999999999888765
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-16 Score=149.53 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=77.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+-.|+. |+|+........ .+..+||+.|||||++ ++ ..+++++|||||||+||+|+||+ |
T Consensus 140 ~~~kl~DFG~a~~~~~~~~~--~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvilyemltG~~P 202 (320)
T d1xjda_ 140 GHIKIADFGMCKENMLGDAK--TNTFCGTPDYIAPEIL------LG---------QKYNHSVDWWSFGVLLYEMLIGQSP 202 (320)
T ss_dssp SCEEECCCTTCBCCCCTTCC--BCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred Cceeccccchhhhccccccc--ccccCCCCCcCCHHHH------cC---------CCCCchhhhhhhhHHHHHHHhCCCC
Confidence 456888 677766544332 5568999999999999 54 67889999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh-hHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT-NVW 159 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~-~~~ 159 (538)
|.+.+...+. .+. ...+.. .......+.+++.+||..+|.+||++. ++.
T Consensus 203 F~~~~~~~~~~~i~----------~~~~~~------------p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~ 253 (320)
T d1xjda_ 203 FHGQDEEELFHSIR----------MDNPFY------------PRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 253 (320)
T ss_dssp SCCSSHHHHHHHHH----------HCCCCC------------CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CCCCCHHHHHHHHH----------cCCCCC------------CccCCHHHHHHHHHhcccCCCCCcCHHHHHH
Confidence 9886655222 000 000000 001123478899999999999999975 553
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.9e-16 Score=145.99 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=72.7
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC-
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~- 87 (538)
..+|+. |+|+.+..... ...+...||+.|||||++ .+ ..++.++|||||||+||||+| |.
T Consensus 145 ~~~Kl~DfG~a~~~~~~~~-~~~~~~~gt~~y~apE~l------~~---------~~~~~~~DiwSlGvil~e~lt~g~~ 208 (273)
T d1mp8a_ 145 DCVKLGDFGLSRYMEDSTY-YKASKGKLPIKWMAPESI------NF---------RRFTSASDVWMFGVCMWEILMHGVK 208 (273)
T ss_dssp TEEEECC--------------------CCGGGCCHHHH------HH---------CCCSHHHHHHHHHHHHHHHHTTSCC
T ss_pred CcEEEccchhheeccCCcc-eeccceecCcccchhhHh------cc---------CCCCCccccccchHHHHHHHhcCCC
Confidence 568999 77877664432 224568899999999999 22 567899999999999999998 78
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.......+. .+. ... .+ ........++.+++.+||+.+|.+||++.++.+.+..++
T Consensus 209 P~~~~~~~~~~~~i~-~~~--------~~------------~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~ 267 (273)
T d1mp8a_ 209 PFQGVKNNDVIGRIE-NGE--------RL------------PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 267 (273)
T ss_dssp TTTTCCGGGHHHHHH-TTC--------CC------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-cCC--------CC------------CCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 99876544222 000 000 00 000112234888999999999999999999988877664
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=1.8e-16 Score=151.87 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=73.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++..|+. |+|+.+.... ....+|||.|||||++ .+ ...+++++|||||||+||||+||+
T Consensus 143 ~g~iKl~DFGla~~~~~~~----~~~~~GT~~y~APE~~------~~--------~~~~~~~~DiwSlGvilyemltG~~ 204 (364)
T d1omwa3 143 HGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVL------QK--------GVAYDSSADWFSLGCMLFKLLRGHS 204 (364)
T ss_dssp SSCEEECCCTTCEECSSSC----CCSCCSCGGGCCHHHH------ST--------TCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEeeeceeeecCCCc----ccccccccccchhHHh------hc--------CCCCCcccchhHHHHHHHHHHhCCC
Confidence 3568998 7888776543 4468999999999999 32 245789999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.+........+.... ....+. ........+.+++.+||..+|.+||+.
T Consensus 205 Pf~~~~~~~~~~~~~~~------~~~~~~------------~~~~~s~~~~~li~~~L~~dP~~R~t~ 254 (364)
T d1omwa3 205 PFRQHKTKDKHEIDRMT------LTMAVE------------LPDSFSPELRSLLEGLLQRDVNRRLGC 254 (364)
T ss_dssp SSCSSCSSCHHHHHHHS------SSCCCC------------CCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred CCCCCCHHHHHHHHHhc------ccCCCC------------CCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence 99875333100000000 000000 000112247889999999999999995
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.4e-16 Score=145.08 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=80.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|+. |+|+.+.+.... ..+...||+.|||||++ .+ ..++.++|||||||+||||+||.
T Consensus 145 ~~~~Kl~DFGla~~~~~~~~~-~~~~~~gt~~y~APE~~------~~---------~~~~~~sDvwS~Gvvl~ellt~~~ 208 (272)
T d1qpca_ 145 TLSCKIADFGLARLIEDNEYT-AREGAKFPIKWTAPEAI------NY---------GTFTIKSDVWSFGILLTEIVTHGR 208 (272)
T ss_dssp TSCEEECCCTTCEECSSSCEE-CCTTCCCCTTTSCHHHH------HH---------CEECHHHHHHHHHHHHHHHHTTTC
T ss_pred ccceeeccccceEEccCCccc-cccccCCcccccChHHH------hC---------CCCCchhhhhhhHHHHHHHHhCCC
Confidence 3578999 788887654332 24568999999999999 22 56789999999999999999965
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
||.......+. .+. .-.....+ ....++.+++.+||+.+|.+||++.++.+.+..
T Consensus 209 ~~~~~~~~~~~~~~i~----------------------~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~ 266 (272)
T d1qpca_ 209 IPYPGMTNPEVIQNLE----------------------RGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLED 266 (272)
T ss_dssp CSSTTCCHHHHHHHHH----------------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH----------------------hcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhh
Confidence 45443333111 000 00000001 122247889999999999999999998887665
Q ss_pred hh
Q 009274 165 LI 166 (538)
Q Consensus 165 l~ 166 (538)
+.
T Consensus 267 ~f 268 (272)
T d1qpca_ 267 FF 268 (272)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.58 E-value=8.5e-17 Score=153.29 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=79.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+.+.+... .....||+.|||||++ .+ ..+++++|||||||+||+|+||+ |
T Consensus 166 ~~vkL~DFGla~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvilyelltG~~P 227 (352)
T d1koba_ 166 SSVKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIV------DR---------EPVGFYTDMWAIGVLGYVLLSGLSP 227 (352)
T ss_dssp CCEEECCCTTCEECCTTSC---EEEECSSGGGCCHHHH------TT---------CCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred CeEEEeecccceecCCCCc---eeeccCcccccCHHHH------cC---------CCCCCccchHHHHHHHHHHHhCCCC
Confidence 467888 78888776542 4568999999999999 44 56889999999999999999999 9
Q ss_pred cchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.+.+...+. .+. ... ... +..........+.+++.+||..+|.+||++.++.+
T Consensus 228 f~~~~~~~~~~~i~-~~~------~~~-----------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 282 (352)
T d1koba_ 228 FAGEDDLETLQNVK-RCD------WEF-----------DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 282 (352)
T ss_dssp SCCSSHHHHHHHHH-HCC------CCC-----------CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCCCHHHHHHHHH-hCC------CCC-----------CcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9876444221 000 000 000 00000112234788999999999999999887754
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=6.5e-16 Score=144.63 Aligned_cols=125 Identities=11% Similarity=0.072 Sum_probs=81.7
Q ss_pred eeeec--cccccccccchhh-----hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh
Q 009274 13 VAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt 85 (538)
..|+. |+|+.+.+..... ..++++||+.|||||++ .| ..+++++|||||||++|||+|
T Consensus 144 ~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~~l~el~t 208 (299)
T d1ckia_ 144 LVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH------LG---------IEQSRRDDLESLGYVLMYFNL 208 (299)
T ss_dssp CEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHH------TT---------BCCCHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccCcceeccccccccceeccccCCcCCCccccCHHHH------hC---------CCCCChhhEEecCHHHHHHHh
Confidence 57777 7887766433211 13468999999999999 44 568899999999999999999
Q ss_pred cC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
|+ ||......... .............+.... .....++.+++.+|++.+|.+||...++.+.+.
T Consensus 209 g~~P~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~ 274 (299)
T d1ckia_ 209 GSLPWQGLKAATKR--------------QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 274 (299)
T ss_dssp SSCTTCCCC---------------------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHH
T ss_pred CCCcccccchHHHH--------------HHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHH
Confidence 99 99875433111 000001111111111111 122345888999999999999999888877777
Q ss_pred Hhh
Q 009274 164 ELI 166 (538)
Q Consensus 164 ~l~ 166 (538)
+++
T Consensus 275 ~~~ 277 (299)
T d1ckia_ 275 NLF 277 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.5e-16 Score=144.04 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=52.6
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+++....... ....+||+.|||||++ .+ ..+++++|||||||+||||+||+ |
T Consensus 153 ~~~kl~dfg~~~~~~~~~~---~~~~~gT~~Y~APE~~------~~---------~~y~~~~DiwSlG~il~ell~g~~p 214 (305)
T d1blxa_ 153 GQIKLADFGLARIYSFQMA---LTSVVVTLWYRAPEVL------LQ---------SSYATPVDLWSVGCIFAEMFRRKPL 214 (305)
T ss_dssp CCEEECSCCSCCCCCGGGG---GCCCCCCCTTCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCeeecchhhhhhhccccc---CCCcccChhhcCcchh------cC---------CCCChhehhhchHHHHHHHHHCCCC
Confidence 467888 56665544332 5679999999999999 44 67889999999999999999999 9
Q ss_pred cchhhhh
Q 009274 89 FTKELID 95 (538)
Q Consensus 89 f~~~~~~ 95 (538)
|.+.+..
T Consensus 215 f~~~~~~ 221 (305)
T d1blxa_ 215 FRGSSDV 221 (305)
T ss_dssp CCCSSHH
T ss_pred CCCCCHH
Confidence 9876443
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.7e-16 Score=145.23 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=85.4
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
++.+|+. |+++...+...........||+.|||||++ .+ ..+++++|||||||+||||++ |+
T Consensus 171 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l------~~---------~~y~~k~DiwS~Gvvl~ell~~g~ 235 (299)
T d1fgka_ 171 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL------FD---------RIYTHQSDVWSFGVLLWEIFTLGG 235 (299)
T ss_dssp TCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCeEeccchhhccccccccccccccCCCChhhhhhhHh------cC---------CCCCchhhhHHhHHHHHHhccCCC
Confidence 3578888 677777665544445568999999999999 22 568899999999999999998 67
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhc-CccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+... +..-.....+ .....+.+++.+||+.+|.+||++.++.+.+.++
T Consensus 236 ~p~~~~~~~~~~~~---------------------i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i 294 (299)
T d1fgka_ 236 SPYPGVPVEELFKL---------------------LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 294 (299)
T ss_dssp CSSTTCCHHHHHHH---------------------HHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH---------------------HHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 8876544422200 0000000011 1223488899999999999999999999988876
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 295 ~ 295 (299)
T d1fgka_ 295 V 295 (299)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.6e-16 Score=142.32 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=80.6
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+|+.+.+.... ......||+.|||||++ ++ ..++.++|||||||++|||+| |+
T Consensus 136 ~~~~kl~DfG~a~~~~~~~~~-~~~~~~~t~~y~aPE~~------~~---------~~~~~ksDiwS~G~~l~el~t~g~ 199 (258)
T d1k2pa_ 136 QGVVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVL------MY---------SKFSSKSDIWAFGVLMWEIYSLGK 199 (258)
T ss_dssp TCCEEECCCSSCCBCSSSSCC-CCCCSCCCGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEECcchhheeccCCCce-eecccCCCCCcCCcHHh------cC---------CCCCcceeecccchhhHhHHhcCC
Confidence 3578999 777766654322 24458899999999999 32 567899999999999999998 88
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
||.+.+...+. .+. +.. .++ .......++.+++.+||+.+|++||+..++.+.+.
T Consensus 200 ~Pf~~~~~~~~~~~i~-~~~-------~~~-------------~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~ 256 (258)
T d1k2pa_ 200 MPYERFTNSETAEHIA-QGL-------RLY-------------RPHLASEKVYTIMYSCWHEKADERPTFKILLSNIL 256 (258)
T ss_dssp CTTTTSCHHHHHHHHH-TTC-------CCC-------------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH-hCC-------CCC-------------CcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhh
Confidence 99876544222 000 000 000 00112234888999999999999999988877653
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=8.9e-16 Score=142.17 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=81.8
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|+. |+|+........ ..+...||+.|||||++ .+ ..+++++|||||||+||||++|.
T Consensus 151 ~~~~Kl~DFG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~------~~---------~~~~~k~DiwS~Gv~l~ell~~~~ 214 (287)
T d1opja_ 151 NHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESL------AY---------NKFSIKSDVWAFGVLLWEIATYGM 214 (287)
T ss_dssp GGCEEECCCCCTTTCCSSSSE-EETTEEECGGGCCHHHH------HH---------CCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEccccceeecCCCCce-eeccccccccccChHHH------cC---------CCCCchhhhhhHHHHHHHHHhCCC
Confidence 3578999 788877654322 24457899999999998 32 56889999999999999999977
Q ss_pred ccc-hhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QFT-KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||. +.....+... +..-..... ......+.+++.+||+.+|.+||++.++.+.+..+
T Consensus 215 p~~~~~~~~~~~~~---------------------i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~ 273 (287)
T d1opja_ 215 SPYPGIDLSQVYEL---------------------LEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 273 (287)
T ss_dssp CSSTTCCHHHHHHH---------------------HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred CCCCcchHHHHHHH---------------------HhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 554 3333211100 000000000 11223478899999999999999999998877776
Q ss_pred hc
Q 009274 166 II 167 (538)
Q Consensus 166 ~~ 167 (538)
..
T Consensus 274 ~~ 275 (287)
T d1opja_ 274 FQ 275 (287)
T ss_dssp TS
T ss_pred HH
Confidence 53
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.56 E-value=1.4e-11 Score=118.51 Aligned_cols=248 Identities=8% Similarity=-0.001 Sum_probs=160.3
Q ss_pred EEEEeecCCCcEEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCceEEEEecCCcCe-------EEEEEecCC
Q 009274 244 KFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGHDHKV-------MAVVYVDED 304 (538)
Q Consensus 244 ~i~~l~~h~~~V~~l~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~~~v-------~~l~~~~~~ 304 (538)
.+..+.++..+ .++|+ |+++++++ .++.|.+||..+++.+..+..+.... ..+.|++++
T Consensus 59 ~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 136 (373)
T d2madh_ 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC
Confidence 44456666554 67888 88888875 45789999999999998887766544 346777776
Q ss_pred CCEEEEE-cCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCCcEEEEECCCCceeEEecCCC
Q 009274 305 QPLCISG-DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHK 382 (538)
Q Consensus 305 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 382 (538)
..+++.. ..++.+.+|+....+..... . ......++++++ .+++.+.|+.+.+||...++.......+.
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~ 207 (373)
T d2madh_ 137 ADLLFFQFAAGPAVGLVVQGGSSDDQLL---S------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM 207 (373)
T ss_pred CcEEEEEEcCCCceEEeeccCCeEEEEe---c------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence 6654433 45677888887654321111 1 112457788887 55788899999999998887766554322
Q ss_pred ------CCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEec--CCC--------CceEEEEEEcCCCCE-------
Q 009274 383 ------SAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEE--DSS--------GAVSSVLSLTAVQHT------- 438 (538)
Q Consensus 383 ------~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~------- 438 (538)
.....+.+. +..++..+.++.+.+|+..++........ ... ........+++++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 287 (373)
T d2madh_ 208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred cccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC
Confidence 222334444 45777788899999999887654322211 100 001112345555444
Q ss_pred ---EEEEeCCCcEEEEeCC--cceeeeccccceEEEEEe--CCC--EEEEEeCCCeEEEEecCCCeeEeeeecC
Q 009274 439 ---LVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (538)
Q Consensus 439 ---l~~~~~dg~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~--~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 503 (538)
+++...++.+.+||.. +.+..+. +...+.++.+ ||+ ++++++.|+.|++||+.+++........
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~ 360 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL 360 (373)
T ss_pred CceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence 4455667788999954 3444443 4455666655 887 4568899999999999999987766544
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.9e-16 Score=144.60 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=73.2
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+...... .++.+||+.|||||++ ++ ...++.++|||||||+||+|+||+ |
T Consensus 148 ~~vkl~DFG~a~~~~~~~----~~~~~GT~~y~aPE~~------~~--------~~~~~~~~DiwSlGvilyell~g~~P 209 (273)
T d1xwsa_ 148 GELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWI------RY--------HRYHGRSAAVWSLGILLYDMVCGDIP 209 (273)
T ss_dssp TEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHH------HH--------SCBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CeEEECccccceeccccc----ccccccCCCcCCHHHH------cC--------CCCCCcccccccceeeehhHhhCCCC
Confidence 467888 6776655432 5679999999999999 22 123457899999999999999999 9
Q ss_pred cchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
|.......-. . .. .+ .....++.+++.+||..+|.+||++.++.+
T Consensus 210 f~~~~~i~~~------~-----~~-~~---------------~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 254 (273)
T d1xwsa_ 210 FEHDEEIIRG------Q-----VF-FR---------------QRVSSECQHLIRWCLALRPSDRPTFEEIQN 254 (273)
T ss_dssp CCSHHHHHHC------C-----CC-CS---------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCchHHhhc------c-----cC-CC---------------CCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 9875332100 0 00 00 001123778999999999999999887654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=6.2e-13 Score=127.10 Aligned_cols=269 Identities=10% Similarity=0.020 Sum_probs=169.4
Q ss_pred CCEEEEE-----eCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEE---------cCCCcEEEEEccCCCC
Q 009274 262 GGFLFSS-----SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG---------DSGGGIFVWSFSFPLG 327 (538)
Q Consensus 262 ~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~---------~~dg~i~vwd~~~~~~ 327 (538)
++.++.. +.++.|.+||..+++.+.++..+..+ .++|+|++..++++. +.|+.|++||..+++.
T Consensus 13 g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~ 90 (355)
T d2bbkh_ 13 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 90 (355)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE
Confidence 5555543 34567999999999999998876554 699999888776653 4578999999998765
Q ss_pred CcceeeecccCCc--eeeeEEEEeecCCEEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCc
Q 009274 328 HEPLKKWNEEKDW--RYSGIHALTTSGRYLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGT 403 (538)
Q Consensus 328 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~ 403 (538)
...+......... .......++++++.+++++ .+..+.+||..+++.+..+..+... ..........++.+.|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~ 169 (355)
T d2bbkh_ 91 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGS 169 (355)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSC
T ss_pred EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc-eEeecCCcceEEEcCCCC
Confidence 4443332221110 1112358999999777664 4678999999999988887654332 222222555666677777
Q ss_pred EEEEECCCCceeEEEecCC----CCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcc----eeeeccc------------
Q 009274 404 IRLWSLSDHSLLTVLEEDS----SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----MKSMQTH------------ 463 (538)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~h------------ 463 (538)
...+............... .........+.+++..++.++.++.+++|+.... +.....+
T Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 249 (355)
T d2bbkh_ 170 LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249 (355)
T ss_dssp EEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC
T ss_pred EEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeecc
Confidence 7777665544333332111 0111111356777888899999999999985431 1111111
Q ss_pred cceEEEEEeCCCEEEEEeCC----------CeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE--E-EEEECCCe
Q 009274 464 KGSVFAVFLEGKWLFTGGWD----------KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--L-FVGCADRT 530 (538)
Q Consensus 464 ~~~v~~~~~~~~~l~sgs~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-~sg~~dg~ 530 (538)
......+++++..++..+.+ ..|.+||..+++........ ..+....+.+|++ + ++++.|+.
T Consensus 250 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-----~~~~~~a~spDG~~~l~v~~~~d~~ 324 (355)
T d2bbkh_ 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-----HEIDSINVSQDEKPLLYALSTGDKT 324 (355)
T ss_dssp SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----EEECEEEECCSSSCEEEEEETTTTE
T ss_pred ceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-----CCEEEEEEcCCCCeEEEEEECCCCE
Confidence 11234555688877766543 36999999988876554432 1133344556664 4 45677999
Q ss_pred EEEEEcCC
Q 009274 531 VKVYYYGK 538 (538)
Q Consensus 531 v~vw~~~~ 538 (538)
|++||..+
T Consensus 325 i~v~D~~t 332 (355)
T d2bbkh_ 325 LYIHDAES 332 (355)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999753
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.7e-16 Score=145.38 Aligned_cols=138 Identities=10% Similarity=0.069 Sum_probs=80.6
Q ss_pred eeeeeec--cccccccccchh--hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 11 KSVAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
+..+|+. |+++........ ......+||+.|||||++...... ....++.++|||||||+||||+||
T Consensus 144 ~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~---------~~~~~~~k~Di~S~Gvvl~el~tg 214 (303)
T d1vjya_ 144 NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINM---------KHFESFKRADIYAMGLVFWEIARR 214 (303)
T ss_dssp TSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCT---------TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccc---------cCCCcCcchhhhhhHHHHHHHhhC
Confidence 3578999 777776544322 123468999999999998221111 124578899999999999999999
Q ss_pred C-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh----cC------ccchHHHHHhhhhccCCCCCcch
Q 009274 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF----GS------EFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
. ||............ .................... +. ....+.+++.+||..+|.+||++
T Consensus 215 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~ 285 (303)
T d1vjya_ 215 CSIGGIHEDYQLPYYD---------LVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTA 285 (303)
T ss_dssp BCBTTBCCCCCCTTTT---------TSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCH
T ss_pred CCCCCcccccccchhh---------cccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCH
Confidence 9 66543222111000 00000000000000000000 00 00127789999999999999999
Q ss_pred hhHHHHHHHhh
Q 009274 156 TNVWKCIRELI 166 (538)
Q Consensus 156 ~~~~~~l~~l~ 166 (538)
.++.+.|.++.
T Consensus 286 ~ei~~~L~~i~ 296 (303)
T d1vjya_ 286 LRIKKTLSQLS 296 (303)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887764
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.54 E-value=4.1e-16 Score=143.49 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=81.1
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+++.+.+... .+..+||+.|+|||++...... ....+++++|||||||+||+|+||+
T Consensus 146 ~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~~PE~~~~~~~~---------~~~~~~~~~DiwslGvilyeml~g~~ 213 (277)
T d1phka_ 146 DMNIKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEIIECSMND---------NHPGYGKEVDMWSTGVIMYTLLAGSP 213 (277)
T ss_dssp TCCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCT---------TSCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCeEEccchheeEccCCCc---eeeeeccCCCCCHHHhhccccc---------cCCCCCchheEcccchhhhhhccCCC
Confidence 4567898 77887765432 4578999999999999544332 2345788999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
||.+.+...+........ . ..+. ........++.+++.+||..+|.+||++.++.+
T Consensus 214 Pf~~~~~~~~~~~i~~~~-----~-~~~~-----------~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~ 269 (277)
T d1phka_ 214 PFWHRKQMLMLRMIMSGN-----Y-QFGS-----------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269 (277)
T ss_dssp SSCCSSHHHHHHHHHHTC-----C-CCCT-----------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCC-----C-CCCC-----------cccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 999875552220000000 0 0000 000111223778999999999999999877644
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.2e-16 Score=140.18 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=73.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-cC
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g~ 87 (538)
+..+|+. |+++..... .....||+.|||||++ .+ ..++++||||||||++|||+| |+
T Consensus 139 ~~~~kl~dfg~s~~~~~~-----~~~~~~~~~y~aPE~l------~~---------~~~t~~sDIwSfG~il~el~t~~~ 198 (262)
T d1byga_ 139 DNVAKVSDFGLTKEASST-----QDTGKLPVKWTAPEAL------RE---------KKFSTKSDVWSFGILLWEIYSFGR 198 (262)
T ss_dssp TSCEEECCCCC-----------------CCTTTSCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEeecccccceecCCC-----CccccccccCCChHHH------hC---------CCCChHHHHHhHHHHHHHHHHCCC
Confidence 4567888 677766544 3357899999999999 22 568899999999999999999 67
Q ss_pred -ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||.......+. .+... . .. + ........+.+++.+||..+|.+||++.++.+.+.++
T Consensus 199 ~p~~~~~~~~~~~~i~~~-~-----~~-----------~----~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i 257 (262)
T d1byga_ 199 VPYPRIPLKDVVPRVEKG-Y-----KM-----------D----APDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 257 (262)
T ss_dssp CSCTTSCGGGHHHHHTTT-C-----CC-----------C----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHcC-C-----CC-----------C----CCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence 88775444222 11100 0 00 0 0011123478899999999999999999998887765
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 258 ~ 258 (262)
T d1byga_ 258 K 258 (262)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.6e-15 Score=139.36 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=78.2
Q ss_pred eeeeeec--cccccccccchhhh-hhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhh-c
Q 009274 11 KSVAKVG--CVGSRICDKEVGLF-LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~llt-g 86 (538)
+...|+. |+++.+........ .+...||+.|||||++ ++ ..++.++|||||||++|||+| |
T Consensus 147 ~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~------~~---------~~~~~~~Di~S~Gvil~emlt~G 211 (273)
T d1u46a_ 147 RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESL------KT---------RTFSHASDTWMFGVTLWEMFTYG 211 (273)
T ss_dssp TTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHH------HH---------CEEEHHHHHHHHHHHHHHHHTTS
T ss_pred ccceeeccchhhhhcccCCCcceecCccccCcccCCHHHH------hC---------CCCCcchhhhhhHHHHHHHHhCC
Confidence 4568999 78887655433222 3357889999999999 32 567799999999999999998 8
Q ss_pred C-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHH
Q 009274 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (538)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~ 164 (538)
+ ||.+.+...+........ ..++ ........+.+++.+||..+|.+||+..++.+.+.+
T Consensus 212 ~~Pf~~~~~~~~~~~i~~~~------~~~~-------------~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~ 271 (273)
T d1u46a_ 212 QEPWIGLNGSQILHKIDKEG------ERLP-------------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLE 271 (273)
T ss_dssp CCTTTTCCHHHHHHHHHTSC------CCCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHhCC------CCCC-------------CcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 9 998765552220000000 0000 001112247889999999999999999998876654
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.3e-15 Score=137.81 Aligned_cols=119 Identities=20% Similarity=0.168 Sum_probs=72.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..+|+. |+|+...+... ...+...||+.|||||++ + .+.+++++|||||||+||||+||.
T Consensus 149 ~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~------~---------~~~~~~ksDI~S~Giil~el~t~~~ 212 (285)
T d1fmka3 149 NLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAA------L---------YGRFTIKSDVWSFGILLTELTTKGR 212 (285)
T ss_dssp GGCEEECCCCTTC---------------CCGGGSCHHHH------H---------HCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcEEEcccchhhhccCCCc-eeeccccccccccChHHH------h---------CCCCCcHHhhhcchHHHHHHHhCCC
Confidence 3568999 67777764433 234568899999999999 2 266889999999999999999966
Q ss_pred cc-chhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 QF-TKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 pf-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
|| .......+. .+. .. ... ........++.+++.+||+.+|++||++.++...+...
T Consensus 213 p~~~~~~~~~~~~~i~-~~-------~~~-------------~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~ 271 (285)
T d1fmka3 213 VPYPGMVNREVLDQVE-RG-------YRM-------------PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 271 (285)
T ss_dssp CSSTTCCHHHHHHHHH-TT-------CCC-------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHH-hc-------CCC-------------CCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhh
Confidence 54 443333111 000 00 000 00011122478899999999999999999988776665
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
.
T Consensus 272 ~ 272 (285)
T d1fmka3 272 F 272 (285)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.52 E-value=3.8e-15 Score=138.56 Aligned_cols=126 Identities=10% Similarity=-0.031 Sum_probs=80.8
Q ss_pred eeeeec--cccccccccchh-----hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhh
Q 009274 12 SVAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLL 84 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~ll 84 (538)
...|+. |+|+...+.... ....+++|||.|||||++ .| ..+++++|||||||++|||+
T Consensus 143 ~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~------~~---------~~~~~~~DiwSlG~~l~ell 207 (293)
T d1csna_ 143 NMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH------LG---------REQSRRDDLEALGHVFMYFL 207 (293)
T ss_dssp TCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHh------cC---------CCCChHHHHHHhhHHHHHHH
Confidence 456777 777665432111 123468999999999999 44 56889999999999999999
Q ss_pred hcC-ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHH
Q 009274 85 IGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (538)
Q Consensus 85 tg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l 162 (538)
||+ ||.+...... ..............+.... .....++.+++..|+..+|++||....+.+.+
T Consensus 208 tg~~Pf~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l 273 (293)
T d1csna_ 208 RGSLPWQGLKAATN--------------KQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLF 273 (293)
T ss_dssp HSSCTTSSCCSCCH--------------HHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHH
T ss_pred hCCCcCCCccchhH--------------HHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHH
Confidence 999 9986533300 0000011110011111111 12234588899999999999999877776666
Q ss_pred HHhh
Q 009274 163 RELI 166 (538)
Q Consensus 163 ~~l~ 166 (538)
..++
T Consensus 274 ~~~~ 277 (293)
T d1csna_ 274 SKVL 277 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.1e-15 Score=140.19 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=84.9
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC--
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-- 87 (538)
..+|+. |+|+.+.........+...||+.|||||++ ++ ..++.++|||||||+||||+||.
T Consensus 170 ~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l------~~---------~~~~~~~Dv~S~G~il~El~t~~~~ 234 (308)
T d1p4oa_ 170 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL------KD---------GVFTTYSDVWSFGVVLWEIATLAEQ 234 (308)
T ss_dssp CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHHTSCC
T ss_pred ceEEEeecccceeccCCcceeeccceecccccCCHHHH------cc---------CCCCcccccccHHHHHHHHHhCCCC
Confidence 469998 788888766655445667999999999999 32 56788999999999999999986
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.+...+.....+ +..+. ........+.+++.+||+.+|++||++.++.+.+.+..
T Consensus 235 p~~~~~~~~~~~~i~~----------------~~~~~----~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~ 293 (308)
T d1p4oa_ 235 PYQGLSNEQVLRFVME----------------GGLLD----KPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 293 (308)
T ss_dssp TTTTSCHHHHHHHHHT----------------TCCCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred CCCCCCHHHHHHHHHh----------------CCCCC----CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 7776544421100000 00000 00111234888999999999999999999988776654
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=4.6e-15 Score=138.68 Aligned_cols=125 Identities=19% Similarity=0.200 Sum_probs=77.5
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|+...+.... ..+.+||+.|||||++ .+ ...++.++|||||||+||||+||+ |
T Consensus 137 ~~~KL~DFG~a~~~~~~~~~--~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlGvil~el~~g~~p 200 (299)
T d1ua2a_ 137 GVLKLADFGLAKSFGSPNRA--YTHQVVTRWYRAPELL------FG--------ARMYGVGVDMWAVGCILAELLLRVPF 200 (299)
T ss_dssp CCEEECCCGGGSTTTSCCCC--CCCSCCCCTTCCHHHH------TT--------CSCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CccccccCccccccCCCccc--ccceecChhhccHHHH------cc--------CCCCChhhhhhhcchHHHHHHhCcCC
Confidence 456888 677776654332 4568999999999998 33 235789999999999999999999 9
Q ss_pred cchhhhhhee-ec-c---cccc---------Ccchhhc-chhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCc
Q 009274 89 FTKELIDYIR-CV-S---TKAS---------DDNIACL-GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP 153 (538)
Q Consensus 89 f~~~~~~~~~-~~-~---~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~ 153 (538)
|.+.+...+. .+ + .... ....... .+...+.... ......+.+++.+||..+|.+||
T Consensus 201 f~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~dll~~~L~~dP~~R~ 272 (299)
T d1ua2a_ 201 LPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIF--------SAAGDDLLDLIQGLFLFNPCARI 272 (299)
T ss_dssp SCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHC--------TTCCHHHHHHHHHHHCSSTTTSC
T ss_pred CCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhc--------ccCCHHHHHHHHHHccCChhhCc
Confidence 9875433111 00 0 0000 0000000 0000011100 11122477899999999999999
Q ss_pred chhhHHH
Q 009274 154 LLTNVWK 160 (538)
Q Consensus 154 ~~~~~~~ 160 (538)
++.++.+
T Consensus 273 sa~e~L~ 279 (299)
T d1ua2a_ 273 TATQALK 279 (299)
T ss_dssp CHHHHHT
T ss_pred CHHHHhC
Confidence 9888754
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.5e-15 Score=139.98 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=80.4
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC--
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-- 87 (538)
..+|+. |+|+....... .....||+.|||||.+ . ...++.+||||||||+||||++|.
T Consensus 164 ~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l------~---------~~~~~~~sDvwSfGvil~ell~~~~~ 225 (309)
T d1fvra_ 164 YVAKIADFGLSRGQEVYVK---KTMGRLPVRWMAIESL------N---------YSVYTTNSDVWSYGVLLWEIVSLGGT 225 (309)
T ss_dssp GCEEECCTTCEESSCEECC---C----CCTTTCCHHHH------H---------HCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred CceEEcccccccccccccc---ccceecCCcccchHHh------c---------cCCCCccceeehhHHHHHHHHhcCCC
Confidence 457888 67776655432 3457899999999999 2 256889999999999999999976
Q ss_pred ccchhhhhhee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHHHhh
Q 009274 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (538)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l~ 166 (538)
||.+.+...+. .+. +. ..+. ........+.+++.+||+.+|++||++.++.+.+.++.
T Consensus 226 p~~~~~~~~~~~~i~-~~--------~~~~------------~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~ 284 (309)
T d1fvra_ 226 PYCGMTCAELYEKLP-QG--------YRLE------------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 284 (309)
T ss_dssp TTTTCCHHHHHHHGG-GT--------CCCC------------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-hc--------CCCC------------CCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 67765544322 110 00 0000 00111234888999999999999999999999888876
Q ss_pred cC
Q 009274 167 IK 168 (538)
Q Consensus 167 ~~ 168 (538)
..
T Consensus 285 ~~ 286 (309)
T d1fvra_ 285 EE 286 (309)
T ss_dssp HS
T ss_pred hc
Confidence 43
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.3e-15 Score=140.23 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=82.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc-C
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG-E 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg-~ 87 (538)
+..+|+. |+++...............|||.|||||++ ++ ..++.++|||||||+||||+|+ .
T Consensus 181 ~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DIwS~G~~l~ellt~g~ 245 (311)
T d1t46a_ 181 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI------FN---------CVYTFESDVWSYGIFLWELFSLGS 245 (311)
T ss_dssp TTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH------HH---------CCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCcccccccchheeccCCCcceEeeecccChHHcCHHHh------cC---------CCCCCcccccchHHHHHHHHhCCC
Confidence 4567888 778877766554445568999999999999 22 5678999999999999999995 5
Q ss_pred -ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhh-cCccchHHHHHhhhhccCCCCCcchhhHHHHHHHh
Q 009274 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (538)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~~l 165 (538)
||......... . ..+..-..... ......+.+++.+||+.+|.+||++.++.+.+.+.
T Consensus 246 p~~~~~~~~~~~-------------~-------~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~ 305 (311)
T d1t46a_ 246 SPYPGMPVDSKF-------------Y-------KMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (311)
T ss_dssp CSSTTCCSSHHH-------------H-------HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH-------------H-------HHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 55443222000 0 00000000001 11223488899999999999999999999888765
Q ss_pred h
Q 009274 166 I 166 (538)
Q Consensus 166 ~ 166 (538)
+
T Consensus 306 i 306 (311)
T d1t46a_ 306 I 306 (311)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=9.5e-12 Score=117.33 Aligned_cols=248 Identities=13% Similarity=0.115 Sum_probs=153.0
Q ss_pred EeecCCCcEEEEEEc--CCEEEEE-eCCCcEEEEeCCCCceEEEE---ecCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 247 DLQGHRDCVTGLAVG--GGFLFSS-SFDKSIHVWSLKDFSHVHTF---KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 247 ~l~~h~~~V~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
....|.+.|.+++|+ |++|+++ ..|+.|++|++........+ ..+...+..++|+|++..+++++..++.+.+|
T Consensus 31 ~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~ 110 (333)
T d1ri6a_ 31 QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT 110 (333)
T ss_dssp EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence 334688899999999 8888555 45899999999765433222 23445677899999877776666678899999
Q ss_pred EccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC-CCcEEEEECCCCceeEE------ecCCCCCeEEEEEe--
Q 009274 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCT------MSGHKSAVSTLAVC-- 391 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~------~~~h~~~v~~l~~~-- 391 (538)
+.................. .....++++++++++++. +..|.+|+......... ..........++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~---~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~ 187 (333)
T d1ri6a_ 111 RLEDGLPVGVVDVVEGLDG---CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187 (333)
T ss_dssp EEETTEEEEEEEEECCCTT---BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred ccccccceecccccCCCcc---ceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence 9875543332222221111 113478999997777764 56799999876543221 12344566889998
Q ss_pred CCEE-EEEecCCcEEEEECCCCce----eEEEecC----CCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCC--cceee
Q 009274 392 NGVL-YSGSRDGTIRLWSLSDHSL----LTVLEED----SSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRND--KFMKS 459 (538)
Q Consensus 392 ~~~l-~s~s~dg~i~iwd~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~~ 459 (538)
+..+ .+....+...+|+...... ....... ..........+++++++++.. ..++.+.+|+.. .....
T Consensus 188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (333)
T d1ri6a_ 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 267 (333)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE
Confidence 3344 4445667788888754332 1122111 111223336889999876655 456789999743 22222
Q ss_pred ecc---ccceEE--EEEeCCCEEEEEeC-CCeEEEEe--cCCCeeE
Q 009274 460 MQT---HKGSVF--AVFLEGKWLFTGGW-DKTVSVQE--LAGDEFE 497 (538)
Q Consensus 460 ~~~---h~~~v~--~~~~~~~~l~sgs~-dg~v~iwd--~~~~~~~ 497 (538)
... +..... ++++||++|++++. ++.|++|+ .+++++.
T Consensus 268 ~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 222 222333 44559998777654 68999995 4566653
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.1e-16 Score=143.76 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=80.8
Q ss_pred eeeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 11 KSVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
+..+|++ |+++.+....... ......||+.|||||++ . ...++.++||||||++||||+||
T Consensus 166 ~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~---------~~~~~~ksDI~SfGivl~El~t~ 230 (311)
T d1r0pa_ 166 KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESL------Q---------TQKFTTKSDVWSFGVLLWELMTR 230 (311)
T ss_dssp TCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHH------H---------HCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEecccchhhccccccccceecccccccccccChHHH------h---------cCCCCChhHhhhhHHHHHHHHHC
Confidence 3578998 7777766543221 23347899999999998 2 25688999999999999999998
Q ss_pred C-ccchhhhh-hee-eccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHHHHH
Q 009274 87 E-QFTKELID-YIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (538)
Q Consensus 87 ~-pf~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~~l~ 163 (538)
. ||...... .+. .+. . . ..+. .......++.+++.+||..+|.+||++.++.+.+.
T Consensus 231 ~~p~~~~~~~~~~~~~i~-~-g------~~~~-------------~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~ 289 (311)
T d1r0pa_ 231 GAPPYPDVNTFDITVYLL-Q-G------RRLL-------------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 289 (311)
T ss_dssp SCCSCC------CHHHHH-T-T------CCCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHH-c-C------CCCC-------------CcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 8 77654222 111 000 0 0 0000 00111234888999999999999999999999888
Q ss_pred Hhh
Q 009274 164 ELI 166 (538)
Q Consensus 164 ~l~ 166 (538)
++.
T Consensus 290 ~i~ 292 (311)
T d1r0pa_ 290 AIF 292 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.8e-15 Score=141.01 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=76.9
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++....... .....|||.|||||++ .+ ..+++++|||||||+||+|++|. ||
T Consensus 142 ~ikl~DFG~~~~~~~~~~---~~~~~~t~~y~ape~~------~~---------~~~~~~~DiWSlGvily~ll~G~~Pf 203 (321)
T d1tkia_ 142 TIKIIEFGQARQLKPGDN---FRLLFTAPEYYAPEVH------QH---------DVVSTATDMWSLGTLVYVLLSGINPF 203 (321)
T ss_dssp CEEECCCTTCEECCTTCE---EEEEESCGGGSCHHHH------TT---------CEECHHHHHHHHHHHHHHHHHSSCTT
T ss_pred EEEEcccchhhccccCCc---ccccccccccccchhc------cC---------CCCCchhhcccHHHHHHHHHhCCCCC
Confidence 45777 66666654432 4468999999999998 44 67889999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchhhHHH
Q 009274 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~~~ 160 (538)
...+...+.... ....+.......+. ...++.+++.+||..+|.+||++.++.+
T Consensus 204 ~~~~~~~~~~~i---------~~~~~~~~~~~~~~--------~s~~~~~li~~~L~~dp~~R~s~~eil~ 257 (321)
T d1tkia_ 204 LAETNQQIIENI---------MNAEYTFDEEAFKE--------ISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp CCSSHHHHHHHH---------HHTCCCCCHHHHTT--------SCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHHHHH---------HhCCCCCChhhccC--------CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 886555222000 00000000110111 1223778999999999999999888765
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.1e-14 Score=136.93 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=74.7
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
++.+|+. |+|+.+....... ..+..||+.|||||++ ++ ....+++++|||||||+||+|+||+
T Consensus 165 ~~~vkL~DFG~a~~~~~~~~~~-~~~~~g~~~~~~pe~~------~~-------~~~~~~~ksDIWSlG~iLyelltG~~ 230 (322)
T d1vzoa_ 165 NGHVVLTDFGLSKEFVADETER-AYDFCGTIEYMAPDIV------RG-------GDSGHDKAVDWWSLGVLMYELLTGAS 230 (322)
T ss_dssp TSCEEESCSSEEEECCGGGGGG-GCGGGSCCTTCCHHHH------TT-------CC---CTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEeeccchhhhccccccc-ccccccccccchhHHh------hc-------CCcCCCchhhhHHHHHHHHHHHhCCC
Confidence 3567888 6777776654432 4568999999999999 43 2345778999999999999999999
Q ss_pred ccchhhhhheeeccccccCcchhhcchhhHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcch
Q 009274 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (538)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~ 155 (538)
||.+....... .....................+.+++.+||..+|.+||+.
T Consensus 231 PF~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~ 281 (322)
T d1vzoa_ 231 PFTVDGEKNSQ-----------------AEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGC 281 (322)
T ss_dssp TTSCTTSCCCH-----------------HHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred CCCCCCHHHHH-----------------HHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCC
Confidence 99876444111 0000000000000011223348889999999999999975
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=5.4e-14 Score=132.64 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=50.9
Q ss_pred eeeeeec--cccccccccchhh--hhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhc
Q 009274 11 KSVAKVG--CVGSRICDKEVGL--FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg 86 (538)
++..|++ |+++.+....... ...+.+||+.|||||++ .+ ...+++++|||||||++|||++|
T Consensus 153 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~------~~--------~~~~~~k~DiwSlGvil~el~~g 218 (318)
T d3blha1 153 DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL------LG--------ERDYGPPIDLWGAGCIMAEMWTR 218 (318)
T ss_dssp TSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHS
T ss_pred CCcEEeeecceeeecccccccccccccceecCHHHhhHHHH------cC--------CCCCCcHHHcccCCceeeeHhhC
Confidence 4578888 7887666433221 12347899999999998 43 24578999999999999999999
Q ss_pred C-ccchhh
Q 009274 87 E-QFTKEL 93 (538)
Q Consensus 87 ~-pf~~~~ 93 (538)
+ ||.+.+
T Consensus 219 ~~pf~~~~ 226 (318)
T d3blha1 219 SPIMQGNT 226 (318)
T ss_dssp SCSCCCSS
T ss_pred CCCCCCCC
Confidence 9 997643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.42 E-value=2e-11 Score=116.29 Aligned_cols=252 Identities=11% Similarity=0.053 Sum_probs=153.6
Q ss_pred cCCeEEEEEeecCCCcEEEEEEc--CCEEEEE----------eCCCcEEEEeCCCCceEEEEecCCc-------CeEEEE
Q 009274 239 SKGNVKFKDLQGHRDCVTGLAVG--GGFLFSS----------SFDKSIHVWSLKDFSHVHTFKGHDH-------KVMAVV 299 (538)
Q Consensus 239 ~~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~----------s~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~ 299 (538)
.+....+.++..+..+ .++|+ |++|+++ +.|+.|++||..+++.+..+..+.. ....++
T Consensus 35 ~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (355)
T d2bbkh_ 35 GEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112 (355)
T ss_dssp TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred CCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEE
Confidence 3344456667666555 68888 7777654 3478999999999999888765432 234578
Q ss_pred EecCCCCEEEEE-cCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe
Q 009274 300 YVDEDQPLCISG-DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378 (538)
Q Consensus 300 ~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 378 (538)
|++++..+++.. +.+..+.+|+..+.+....+.. ... ...+.......++.+.|+...++..........+
T Consensus 113 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~ 184 (355)
T d2bbkh_ 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV---PDC-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184 (355)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC---CSE-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred EecCCCeeEEecCCCCceeeeeecCCCcEeeEEec---CCc-----ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEE
Confidence 999777654433 4567899999886643332221 110 1111122233444445555544444332222111
Q ss_pred ------cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEE--EecCC----------CCceEEEEEEcCCCCE
Q 009274 379 ------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTV--LEEDS----------SGAVSSVLSLTAVQHT 438 (538)
Q Consensus 379 ------~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~ 438 (538)
..+...+....+. +..++.++.++.+++|++..++.... ...+. .+. ..+.+++++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~d~~~ 262 (355)
T d2bbkh_ 185 HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW--QQVAYHRALDR 262 (355)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS--SCEEEETTTTE
T ss_pred ecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccce--EEEEEeCCCCe
Confidence 1233445555666 56888999999999999988764221 11110 111 12578899988
Q ss_pred EEEEeCC----------CcEEEEeCC--cceeeeccccceEEEEEe--CCC--EEEEEeCCCeEEEEecCCCeeEeeeec
Q 009274 439 LVVSHES----------GSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAGDEFEEDVIP 502 (538)
Q Consensus 439 l~~~~~d----------g~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 502 (538)
++....+ +.|.+||.. +.+..+.. ...+.++.+ ||+ ++++++.|+.|++||+++++.......
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence 8776543 368999954 34444443 344555554 887 456777899999999999987766554
Q ss_pred C
Q 009274 503 T 503 (538)
Q Consensus 503 ~ 503 (538)
.
T Consensus 342 ~ 342 (355)
T d2bbkh_ 342 L 342 (355)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.9e-14 Score=130.35 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=76.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+|+........ .....||+.|||||++ .+ ...++.++|||||||+||+|++|+ |
T Consensus 139 ~~~kl~DFG~a~~~~~~~~~--~~~~~gt~~y~apE~~------~~--------~~~~~~~~DiwSlGvily~m~~G~~P 202 (298)
T d1gz8a_ 139 GAIKLADFGLARAFGVPVRT--YTHEVVTLWYRAPEIL------LG--------CKYYSTAVDIWSLGCIFAEMVTRRAL 202 (298)
T ss_dssp SCEEECSTTHHHHHCCCSBC--TTCCBCCCTTCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcceeccCCcceeccCCccc--ceeecccceeeehhhh------cc--------ccCCCccccccccchhhhHHhhCCCC
Confidence 456888 666766543322 5568999999999998 32 234578999999999999999999 9
Q ss_pred cchhhhhhee-ec-c---ccccC--cc---hhhc-chh-hHHHHHHHHHHHhhhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 89 FTKELIDYIR-CV-S---TKASD--DN---IACL-GMY-MAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 89 f~~~~~~~~~-~~-~---~~~~~--~~---~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
|.+.+..... .+ + ..... .. +... ... ........ ........++.+++.+||..+|.+||++.
T Consensus 203 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~dll~~mL~~dP~~R~t~~ 278 (298)
T d1gz8a_ 203 FPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFS----KVVPPLDEDGRSLLSQMLHYDPNKRISAK 278 (298)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHH----HHSTTCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred CCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchh----hhccCCCHHHHHHHHHHccCChhHCcCHH
Confidence 9875432111 00 0 00000 00 0000 000 00000000 00011112477899999999999999988
Q ss_pred hHHH
Q 009274 157 NVWK 160 (538)
Q Consensus 157 ~~~~ 160 (538)
++.+
T Consensus 279 ell~ 282 (298)
T d1gz8a_ 279 AALA 282 (298)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8765
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.7e-13 Score=130.65 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=76.5
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+|+..... .+...||+.|||||++ .+ ...++.++|||||||+||+|++|+
T Consensus 157 ~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlGvil~ell~g~~ 217 (346)
T d1cm8a_ 157 DCELKILDFGLARQADSE-----MTGYVVTRWYRAPEVI------LN--------WMRYTQTVDIWSVGCIMAEMITGKT 217 (346)
T ss_dssp TCCEEECCCTTCEECCSS-----CCSSCSCGGGCCTHHH------HT--------TTCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred ccccccccccceeccCCc-----cccccccccccCHHHH------cC--------CCCCCccchhhcchHHHHHHHHCcC
Confidence 3456788 667766544 4578999999999998 32 234678999999999999999999
Q ss_pred ccchhhhhheee--ccccccC-cchhhcchhhHHHHHHHHHHHh--------hhcCccchHHHHHhhhhccCCCCCcchh
Q 009274 88 QFTKELIDYIRC--VSTKASD-DNIACLGMYMAWMEKVTYLLEN--------KFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (538)
Q Consensus 88 pf~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~l~~~p~~r~~~~ 156 (538)
||.+.+...... ....... ..+ .................. ......+.+.+++.+||..+|.+||++.
T Consensus 218 pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~ 296 (346)
T d1cm8a_ 218 LFKGSDHLDQLKEIMKVTGTPPAEF-VQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG 296 (346)
T ss_dssp SSCCSSHHHHHHHHHHHHCCCCHHH-HHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred CCCCCChHHHHHHHHhccCCCcHHH-HhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHH
Confidence 998754331110 0000000 000 000000000000000000 0011123467899999999999999998
Q ss_pred hHHH
Q 009274 157 NVWK 160 (538)
Q Consensus 157 ~~~~ 160 (538)
++.+
T Consensus 297 eiL~ 300 (346)
T d1cm8a_ 297 EALA 300 (346)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.35 E-value=1.9e-13 Score=126.71 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=46.9
Q ss_pred eeeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+...|+. |+|..+...... .....||+.|+|||++ .+ ...+++++|||||||+||||++|+
T Consensus 136 ~~~~kl~DfG~a~~~~~~~~~--~~~~~~~~~y~~pE~~------~~--------~~~~~~~~DiwslGv~l~el~~G~~ 199 (286)
T d1ob3a_ 136 EGELKIADFGLARAFGIPVRK--YTHEIVTLWYRAPDVL------MG--------SKKYSTTIDIWSVGCIFAEMVNGTP 199 (286)
T ss_dssp TSCEEECCTTHHHHHCC-----------CCCTTCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEecccccceecccCccc--cceecccchhhhHHHH------hC--------CCCCCcceeehhcCcHHHHHHHCCC
Confidence 4567888 556555433221 4467899999999999 33 245689999999999999999999
Q ss_pred ccchhh
Q 009274 88 QFTKEL 93 (538)
Q Consensus 88 pf~~~~ 93 (538)
||.+.+
T Consensus 200 pf~~~~ 205 (286)
T d1ob3a_ 200 LFPGVS 205 (286)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 997643
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.7e-13 Score=129.35 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=77.1
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
..|+. |+++.+...+. ..+.+||+.|||||++ .+ ...++.++|||||||++|||++|+ ||
T Consensus 161 ~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DIwSlG~il~el~~g~~pf 223 (350)
T d1q5ka_ 161 VLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELI------FG--------ATDYTSSIDVWSAGCVLAELLLGQPIF 223 (350)
T ss_dssp CEEECCCTTCEECCTTSC---CCSCCSCTTSCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHTSCSS
T ss_pred ceeEecccchhhccCCcc---cccccccccccChHHh------hc--------ccCCCcceeecccceEEEehhhCCCCC
Confidence 57888 67777665432 4568999999999998 33 256789999999999999999999 99
Q ss_pred chhhhhheeeccccccCcchhhcc-h-hhHHHHHHHHHHHh-------------hhcCccchHHHHHhhhhccCCCCCcc
Q 009274 90 TKELIDYIRCVSTKASDDNIACLG-M-YMAWMEKVTYLLEN-------------KFGSEFVSLQLMFCQCLNFDPGCRPL 154 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~l~~~p~~r~~ 154 (538)
...+...+.....+ ... + ...+....+..... ........+.+++.+||..+|.+||+
T Consensus 224 ~~~~~~~~l~~i~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t 296 (350)
T d1q5ka_ 224 PGDSGVDQLVEIIK-------VLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT 296 (350)
T ss_dssp CCSSHHHHHHHHHH-------HHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred CCCCHHHHHHHHHH-------HhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcC
Confidence 76543311100000 000 0 00000000000000 00112234778999999999999999
Q ss_pred hhhHHH
Q 009274 155 LTNVWK 160 (538)
Q Consensus 155 ~~~~~~ 160 (538)
+.++.+
T Consensus 297 a~e~L~ 302 (350)
T d1q5ka_ 297 PLEACA 302 (350)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888764
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.3e-13 Score=126.51 Aligned_cols=64 Identities=17% Similarity=0.360 Sum_probs=41.3
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+++...... ..+..+||+.|||||++ +| ..+++++|||||||++|+|++|+ |
T Consensus 156 ~~~kl~df~~~~~~~~~~---~~~~~~~t~~y~aPE~l------~~---------~~~~~~~DiwSlG~~l~ell~g~~p 217 (355)
T d2b1pa1 156 CTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMVRHKIL 217 (355)
T ss_dssp CCEEECCCCC------------------CCTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred cceeeechhhhhcccccc---ccccccccccccChhhh------cC---------CCCCCCcccccccchHHHHhhCCCC
Confidence 445666 4555544332 25678999999999999 54 56789999999999999999999 9
Q ss_pred cchhh
Q 009274 89 FTKEL 93 (538)
Q Consensus 89 f~~~~ 93 (538)
|.+.+
T Consensus 218 F~~~~ 222 (355)
T d2b1pa1 218 FPGRD 222 (355)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 97654
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.9e-13 Score=128.80 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=76.5
Q ss_pred eeeeec--cccccccccchh-hhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-
Q 009274 12 SVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~- 87 (538)
+..|+. |+|+........ ......+||+.|||||++ .. ...++.++||||+||++|+|++|+
T Consensus 146 ~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l------~~--------~~~~~~~~DiwSlG~il~eml~g~~ 211 (345)
T d1pmea_ 146 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM------LN--------SKGYTKSIDIWSVGCILAEMLSNRP 211 (345)
T ss_dssp CCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGT------TT--------BCSCSTHHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEcccCceeeccCCCccceeeccccccceechHHHh------hc--------CCCCCchhhhhccCceehHHhhCCC
Confidence 567888 677665544322 124468899999999987 22 245678999999999999999999
Q ss_pred ccchhhhhhee--eccccccCc-chhhcchhhHHHHHHHHHHH-------hhhcCccchHHHHHhhhhccCCCCCcchhh
Q 009274 88 QFTKELIDYIR--CVSTKASDD-NIACLGMYMAWMEKVTYLLE-------NKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (538)
Q Consensus 88 pf~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~ 157 (538)
||......... ......... ..................+. ......-..+.+++.+||..+|.+||++.+
T Consensus 212 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e 291 (345)
T d1pmea_ 212 IFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQ 291 (345)
T ss_dssp SCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHH
Confidence 99765332111 000000000 00000000000000000000 000111224778999999999999999888
Q ss_pred HHH
Q 009274 158 VWK 160 (538)
Q Consensus 158 ~~~ 160 (538)
+.+
T Consensus 292 ~L~ 294 (345)
T d1pmea_ 292 ALA 294 (345)
T ss_dssp HHT
T ss_pred Hhc
Confidence 754
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=9.2e-13 Score=126.58 Aligned_cols=60 Identities=27% Similarity=0.594 Sum_probs=45.6
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
-.|+. |.|+..... ....+||+.|||||++ .+ ..+++++|||||||+|++|++|+ ||
T Consensus 170 ~~kl~dfg~s~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~el~~g~~pF 229 (362)
T d1q8ya_ 170 QIKIADLGNACWYDEH-----YTNSIQTREYRSPEVL------LG---------APWGCGADIWSTACLIFELITGDFLF 229 (362)
T ss_dssp EEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHH------HT---------CCCCTHHHHHHHHHHHHHHHHSSCCC
T ss_pred eeeEeecccccccccc-----cccccccccccChhhc------cc---------cCCCccccccchHHHHHHHHHCCCCC
Confidence 45777 455544433 3468999999999998 33 56789999999999999999999 99
Q ss_pred chh
Q 009274 90 TKE 92 (538)
Q Consensus 90 ~~~ 92 (538)
.+.
T Consensus 230 ~~~ 232 (362)
T d1q8ya_ 230 EPD 232 (362)
T ss_dssp ---
T ss_pred CCC
Confidence 764
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=5.6e-10 Score=106.92 Aligned_cols=250 Identities=10% Similarity=0.026 Sum_probs=153.3
Q ss_pred cCCeEEEEEeecCCCcEEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCceEEEEecCCcC-------eEEEE
Q 009274 239 SKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGHDHK-------VMAVV 299 (538)
Q Consensus 239 ~~~~~~i~~l~~h~~~V~~l~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~~~-------v~~l~ 299 (538)
.+....+..+.+|..+ .++|+ |+++++++ .|++|++||..+++.+..+..+... ...++
T Consensus 53 ~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a 130 (368)
T d1mdah_ 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceE
Confidence 3444444555555554 46777 77777654 4778999999999999888754332 24689
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe-
Q 009274 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM- 378 (538)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~- 378 (538)
|+|+++.++++...++.+.+||+.+.+....+.. .... .........++..+.||.+.+++..........
T Consensus 131 ~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~---~~~~-----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~ 202 (368)
T d1mdah_ 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS---ASCF-----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC---SSCC-----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec---cCcc-----eEccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence 9999888877777889999999987654333221 1110 011223457777888999999988655433221
Q ss_pred -----cCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCC------------CCceEEEEEEcCCCCEEEE
Q 009274 379 -----SGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS------------SGAVSSVLSLTAVQHTLVV 441 (538)
Q Consensus 379 -----~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~ 441 (538)
..+...+....+.....+....++.+.+++...+.......... .+. ..+++++++..+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~~~~~~~v 280 (368)
T d1mdah_ 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF--QMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS--SCEEEETTTTEEEE
T ss_pred ecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCc--eeEEEcCCCCEEEE
Confidence 22333444555553322333445667777776554432221110 011 12578888887766
Q ss_pred EeCC---------CcEEEEeCC--cceeeeccccceEEEEEe--CCC--EEEEEeCCCeEEEEecCCCeeEeeee
Q 009274 442 SHES---------GSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAGDEFEEDVI 501 (538)
Q Consensus 442 ~~~d---------g~i~iwd~~--~~~~~~~~h~~~v~~~~~--~~~--~l~sgs~dg~v~iwd~~~~~~~~~~~ 501 (538)
...+ ..|.+||.. +.+..+. +...+.++.+ ||+ .++++..|+.|++||..+++......
T Consensus 281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 5432 358889954 4444444 3345555554 886 35667788999999999998766554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.21 E-value=3.5e-10 Score=108.40 Aligned_cols=255 Identities=8% Similarity=-0.088 Sum_probs=154.5
Q ss_pred CcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEE---------cCCCcEEEEEccCCCCCcceeeecccCC--c
Q 009274 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG---------DSGGGIFVWSFSFPLGHEPLKKWNEEKD--W 340 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~ 340 (538)
..+.+||..+++.+..+..+... .++|+|++..+.++. +.|+.|.+||..+.+....+........ .
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceeccc
Confidence 34667799999999988877655 588999877765543 3578899999988765444332111100 0
Q ss_pred eeeeEEEEeecCCEEEEee-CCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEe
Q 009274 341 RYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLE 419 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 419 (538)
......++++||++++++. .++.+.+||+.+++....+..+..... ....+..++..+.||++.+|++..........
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~ 202 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence 0112358999999887776 579999999999999888876554321 11225677888999999999987655433221
Q ss_pred cC-----CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC--ccee--e------------eccccceEEEEEeCCCEEE
Q 009274 420 ED-----SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMK--S------------MQTHKGSVFAVFLEGKWLF 478 (538)
Q Consensus 420 ~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~--~------------~~~h~~~v~~~~~~~~~l~ 478 (538)
.. ....... ..+.+++..+.+. ++.+++++.. .... . +.........+++++..++
T Consensus 203 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 279 (368)
T d1mdah_ 203 GAQCTGAQNCSSQA-AQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279 (368)
T ss_dssp CCCSCTTSCBCSCC-EEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred ecccccccccceee-cccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEE
Confidence 11 1111111 3556666554443 3344444422 1110 0 1111223456667777665
Q ss_pred EEeCC---------CeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE--E-EEEECCCeEEEEEcC
Q 009274 479 TGGWD---------KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--L-FVGCADRTVKVYYYG 537 (538)
Q Consensus 479 sgs~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-~sg~~dg~v~vw~~~ 537 (538)
....+ ..|.+||..+++........ ..+....+++|++ + +++..|+.|++||..
T Consensus 280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-----~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-----EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred EEecCCCceeecCCceEEEEECCCCcEeEEecCC-----CceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 54322 35899999998765544321 1123344555764 3 456779999999975
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.8e-12 Score=122.29 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
+..|+. |+|...... ..+..||+.|||||++ .+ ...++.++|||||||++|+|++|+ |
T Consensus 158 ~~~kl~dfg~a~~~~~~-----~~~~~g~~~y~apE~~------~~--------~~~~~~~~DiwSlGv~l~~ll~g~~p 218 (348)
T d2gfsa1 158 CELKILDFGLARHTDDE-----MTGYVATRWYRAPEIM------LN--------WMHYNQTVDIWSVGCIMAELLTGRTL 218 (348)
T ss_dssp CCEEECCC----CCTGG-----GSSSCHHHHTSCHHHH------TT--------CSCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred ccccccccchhcccCcc-----cccccccccccCchhh------cC--------CccCCcccchhhhhHHHHHHHhCCCC
Confidence 456777 555555433 4568999999999998 33 234678999999999999999999 9
Q ss_pred cchhhhhheeeccccc--cC-cchhhcchhhHHHHHHHHH-------HHhhhcCccchHHHHHhhhhccCCCCCcchhhH
Q 009274 89 FTKELIDYIRCVSTKA--SD-DNIACLGMYMAWMEKVTYL-------LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (538)
Q Consensus 89 f~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~l~~~p~~r~~~~~~ 158 (538)
|.+.+........... .. ..+................ ...........+.+++.+||..+|.+||++.++
T Consensus 219 F~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~el 298 (348)
T d2gfsa1 219 FPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 298 (348)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHH
Confidence 9875333111000000 00 0000000000000000000 000001122347789999999999999998887
Q ss_pred HH
Q 009274 159 WK 160 (538)
Q Consensus 159 ~~ 160 (538)
.+
T Consensus 299 L~ 300 (348)
T d2gfsa1 299 LA 300 (348)
T ss_dssp HT
T ss_pred hc
Confidence 65
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.19 E-value=3.9e-12 Score=120.15 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=49.8
Q ss_pred eeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-cc
Q 009274 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (538)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-pf 89 (538)
.-|+. |+|+...+... ....+||+.|||||++ .+ ...++.++|||||||++|+|++|+ ||
T Consensus 168 ~vkl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~e~~~g~~pf 230 (328)
T d3bqca1 168 KLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELL------VD--------YQMYDYSLDMWSLGCMLASMIFRKEPF 230 (328)
T ss_dssp EEEECCGGGCEECCTTCC---CCSCCSCGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred eeeecccccceeccCCCc---ccccccCccccCcccc------cC--------CCCCCcccchhhhhhhhHHhccCCCCC
Confidence 45777 77777665433 4578999999999998 33 234688999999999999999999 99
Q ss_pred chh
Q 009274 90 TKE 92 (538)
Q Consensus 90 ~~~ 92 (538)
...
T Consensus 231 ~~~ 233 (328)
T d3bqca1 231 FHG 233 (328)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2e-11 Score=113.30 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=48.1
Q ss_pred eeeeec--cccccccccchhhhhhhccccccccChHHHHHHHhhcCceeeeccccccccccCcchhhhhhhhhhhhcC-c
Q 009274 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (538)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDi~slG~~l~~lltg~-p 88 (538)
...|+. |+|+........ .....+++.|+|||++ .+ ...+++++|||||||++|||++|+ |
T Consensus 138 ~~~kl~DFG~a~~~~~~~~~--~~~~~~~~~~~~pe~~------~~--------~~~~~~~~DiwSlG~il~ell~g~~p 201 (292)
T d1unla_ 138 GELKLANFGLARAFGIPVRC--YSAEVVTLWYRPPDVL------FG--------AKLYSTSIDMWSAGCIFAELANAGRP 201 (292)
T ss_dssp CCEEECCCTTCEECCSCCSC--CCSCCSCGGGCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHTTTSCC
T ss_pred CceeeeecchhhcccCCCcc--ceeeccccchhhhhHh------cc--------CCCCCchhhccccchHHHHHhhCCCC
Confidence 457888 667666544332 4567899999999998 33 233678999999999999999999 8
Q ss_pred cc
Q 009274 89 FT 90 (538)
Q Consensus 89 f~ 90 (538)
|.
T Consensus 202 ~~ 203 (292)
T d1unla_ 202 LF 203 (292)
T ss_dssp SC
T ss_pred CC
Confidence 63
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.94 E-value=6.1e-09 Score=99.77 Aligned_cols=220 Identities=9% Similarity=0.028 Sum_probs=141.9
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEec------------------------------CCcCeEEEEEecCCCCEEEEEcCC
Q 009274 265 LFSSSFDKSIHVWSLKDFSHVHTFKG------------------------------HDHKVMAVVYVDEDQPLCISGDSG 314 (538)
Q Consensus 265 l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------------h~~~v~~l~~~~~~~~~l~s~~~d 314 (538)
++|++.+|.|++|++.+++.++++.. |..........|++..++++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 67788899999999999988887642 222334444567777777888899
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC--EEEEeeCCC-----------------cEEEEECCCCcee
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR--YLYTGSGDR-----------------TIKAWSLLDGTLS 375 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~~dg-----------------~i~iwd~~~~~~~ 375 (538)
.+|.++|+.+.+....+..... ......+++++|+ +++..+.+. .+..+|..+.+..
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g----~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~ 169 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNV----QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA 169 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTC----CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred CEEEEEECCCCcEeeEEecCCC----CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence 9999999997765443332111 1112358888888 555444432 2356888888877
Q ss_pred EEecCCCCCeEEEEEe--CCEEEEEecC-----------------------------------------CcEEEEECCCC
Q 009274 376 CTMSGHKSAVSTLAVC--NGVLYSGSRD-----------------------------------------GTIRLWSLSDH 412 (538)
Q Consensus 376 ~~~~~h~~~v~~l~~~--~~~l~s~s~d-----------------------------------------g~i~iwd~~~~ 412 (538)
.++... .....++++ ++++++++.+ +.+.+++....
T Consensus 170 ~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~ 248 (441)
T d1qnia2 170 WQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES 248 (441)
T ss_dssp EEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred EEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence 766543 335667776 4466655533 34555555555
Q ss_pred ceeEEEecCCCCceEEEEEEcCCCCEEEE-EeCCCcEEEEeCCcceeeeccc---cceE----------EEEEe--CCCE
Q 009274 413 SLLTVLEEDSSGAVSSVLSLTAVQHTLVV-SHESGSIKVWRNDKFMKSMQTH---KGSV----------FAVFL--EGKW 476 (538)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~h---~~~v----------~~~~~--~~~~ 476 (538)
+.+..+...... .. +.++|||+++++ +..++++.+||..+....+.++ ...+ ....| +|+.
T Consensus 249 ~v~~~IPvgksP--hG-v~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~ 325 (441)
T d1qnia2 249 EFTRYIPVPKNP--HG-LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325 (441)
T ss_dssp SSEEEECCBSSC--CC-EEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred ceEEEEeCCCCc--cC-ceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence 556666544322 22 689999998765 5679999999977644332221 1222 22345 6677
Q ss_pred EEEEeCCCeEEEEecC
Q 009274 477 LFTGGWDKTVSVQELA 492 (538)
Q Consensus 477 l~sgs~dg~v~iwd~~ 492 (538)
+.+...|..|..|++.
T Consensus 326 yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 326 YTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEETTTTEEEEEEHH
T ss_pred EEcccccceEEEeccc
Confidence 8888899999999974
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.89 E-value=2.1e-07 Score=91.67 Aligned_cols=117 Identities=11% Similarity=0.069 Sum_probs=80.7
Q ss_pred eecCCCcEEEEEEc--CCEEEEEeC---------CCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCc
Q 009274 248 LQGHRDCVTGLAVG--GGFLFSSSF---------DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (538)
Q Consensus 248 l~~h~~~V~~l~~~--~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 316 (538)
+..|...|.++.|+ +++|+.++. ++.+.+||+++++ +..+..|...+..+.|+|++..++.+ .++.
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~ 133 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV--WNND 133 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE--ETTE
T ss_pred hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe--eccc
Confidence 45667889999999 899988753 5678999999876 45577889999999999988876553 5678
Q ss_pred EEEEEccCCCCCcceeeeccc------C-------CceeeeEEEEeecCCEEEEeeCCCc-EEEE
Q 009274 317 IFVWSFSFPLGHEPLKKWNEE------K-------DWRYSGIHALTTSGRYLYTGSGDRT-IKAW 367 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~l~sg~~dg~-i~iw 367 (538)
+++|+..++............ . .........++|||++|+....|.+ +..|
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence 999998876543322111100 0 0011123579999999988766533 4433
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.76 E-value=9.2e-06 Score=73.48 Aligned_cols=235 Identities=9% Similarity=0.121 Sum_probs=138.2
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeeccc--CCceeeeEEEEeec-CCEEEE-eeCCCcEEEEECC
Q 009274 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE--KDWRYSGIHALTTS-GRYLYT-GSGDRTIKAWSLL 370 (538)
Q Consensus 295 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~s-g~~dg~i~iwd~~ 370 (538)
-..+++.+++ .++++-..+..|++||.+. .....+...... .......+ ++..+ +..+++ .+.++.|..++.
T Consensus 25 P~gvavd~dg-~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 25 PSGVAVNAQN-DIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRV-AVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp EEEEEECTTC-CEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEE-EEETTTTEEEEEECGGGCEEEEECT-
T ss_pred ccEEEEcCCC-CEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccc-cccccccccceeccCCccccccccc-
Confidence 4678887744 4666666778888887542 111111110000 00011112 33333 334443 344567777875
Q ss_pred CCceeEEec-CCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCc
Q 009274 371 DGTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS 447 (538)
Q Consensus 371 ~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 447 (538)
.++....+. ........+++. +.++++....+.+.+++. +++.+..+...........+++.++++.+++....+.
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccc
Confidence 566666653 334556788887 446666666677888875 4566666643333333444688899998888888899
Q ss_pred EEEEeC-Ccceeeec--cccceEEEEEe--CCCEEEEEeC-CCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE
Q 009274 448 IKVWRN-DKFMKSMQ--THKGSVFAVFL--EGKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK 521 (538)
Q Consensus 448 i~iwd~-~~~~~~~~--~h~~~v~~~~~--~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (538)
|++||. ++.+.++. ++......++. +|+.+++-+. ++.|.+|+.. +++......... ...+.....-+++.
T Consensus 180 V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~--~~~p~~vav~~dG~ 256 (279)
T d1q7fa_ 180 VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVK--HAQCFDVALMDDGS 256 (279)
T ss_dssp EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSC--CSCEEEEEEETTTE
T ss_pred eeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCC--CCCEeEEEEeCCCc
Confidence 999994 44455542 23334455554 7887776544 4579999965 444333322211 12233444556889
Q ss_pred EEEEECCCeEEEEEcC
Q 009274 522 LFVGCADRTVKVYYYG 537 (538)
Q Consensus 522 l~sg~~dg~v~vw~~~ 537 (538)
|++++.++.|++|++.
T Consensus 257 l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 257 VVLASKDYRLYIYRYV 272 (279)
T ss_dssp EEEEETTTEEEEEECS
T ss_pred EEEEeCCCeEEEEEee
Confidence 9988999999999974
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.75 E-value=1.1e-07 Score=90.82 Aligned_cols=239 Identities=10% Similarity=0.066 Sum_probs=144.0
Q ss_pred CCCcEEEEE--EcCCEEEEE-eCCCcEEEEeCCCCceEEEEec-CCcCeEEEEEecCCCCEEEEEcCCCcE---------
Q 009274 251 HRDCVTGLA--VGGGFLFSS-SFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGI--------- 317 (538)
Q Consensus 251 h~~~V~~l~--~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i--------- 317 (538)
|.-...... ..|++++.. ..+++|.++|+++++....+.- +......++|+|+++...+++..+..+
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~ 149 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF 149 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence 444444443 337777555 5788999999999999887763 567899999999877655554433333
Q ss_pred ---------EEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC---------------------------
Q 009274 318 ---------FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD--------------------------- 361 (538)
Q Consensus 318 ---------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--------------------------- 361 (538)
..+|..+......+..... .....++++|+++++.+.+
T Consensus 150 ~~~~~~~~~~~iD~~t~~v~~qI~v~~~------p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~ 223 (441)
T d1qnia2 150 SLDNSYTMFTAIDAETMDVAWQVIVDGN------LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA 223 (441)
T ss_dssp CGGGEEEEEEEEETTTCSEEEEEEESSC------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred ccccccceEEeecCccceeeEEEecCCC------ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence 3355554332222221111 1234778888877766543
Q ss_pred --------------CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCE-EEEEecCCcEEEEECCCCcee--------E
Q 009274 362 --------------RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGV-LYSGSRDGTIRLWSLSDHSLL--------T 416 (538)
Q Consensus 362 --------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~-l~s~s~dg~i~iwd~~~~~~~--------~ 416 (538)
+.+.+++....+.+..+..... ...+.++ +++ ++++..++++.+||+.+.... .
T Consensus 224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~ 302 (441)
T d1qnia2 224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD 302 (441)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred EEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence 3444555444555666655444 4678888 444 456778999999998652210 0
Q ss_pred EEec-CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc------------ceeee-----ccccceEEEEE--eCCCE
Q 009274 417 VLEE-DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------------FMKSM-----QTHKGSVFAVF--LEGKW 476 (538)
Q Consensus 417 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------~~~~~-----~~h~~~v~~~~--~~~~~ 476 (538)
.+.. ...+....-..|.++|+.+.+...|..|..|+... ....+ .+|...+.+.+ +||++
T Consensus 303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~ 382 (441)
T d1qnia2 303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW 382 (441)
T ss_dssp GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred EEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcE
Confidence 1111 11112222258999998888899999999998532 22333 34444444333 59999
Q ss_pred EEEEe---CCCe----------EEEEecCCCee
Q 009274 477 LFTGG---WDKT----------VSVQELAGDEF 496 (538)
Q Consensus 477 l~sgs---~dg~----------v~iwd~~~~~~ 496 (538)
|++++ .|.. -.+.|+.+.+.
T Consensus 383 l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~ 415 (441)
T d1qnia2 383 LVVLSKFSKDRFLPVGPLHPENDQLIDISGEEM 415 (441)
T ss_dssp EEEEESCCGGGSCCCSSSCCEEEEEEECSSSSC
T ss_pred EEecCccccccCcCCCCCCCccceeEEecCCeE
Confidence 99994 4432 35667765553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.67 E-value=7.4e-06 Score=75.09 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=142.7
Q ss_pred cEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 009274 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 254 ~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (538)
.+..++++ |+++++...+++|..||... + ...+......+.+++|.+++. ++++...++.+..|+.........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~- 104 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVE- 104 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEE-
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEeccccccee-
Confidence 47789998 88999988899998888653 3 334455677899999998654 778888888888888765432221
Q ss_pred eeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEec----------CCCCCeEEEEEeCC-EEEEEec
Q 009274 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS----------GHKSAVSTLAVCNG-VLYSGSR 400 (538)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------~h~~~v~~l~~~~~-~l~s~s~ 400 (538)
............-..+.++++++++.+.++.+..+|...+....... ........+.++++ ++++.+.
T Consensus 105 -~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~ 183 (302)
T d2p4oa1 105 -TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE 183 (302)
T ss_dssp -EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred -eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence 11111111112234677888888888888999999987765332211 12234567778755 5666677
Q ss_pred CCcEEEEECCCCceeE---EEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeee---ccccceEEEEEe--
Q 009274 401 DGTIRLWSLSDHSLLT---VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM---QTHKGSVFAVFL-- 472 (538)
Q Consensus 401 dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~h~~~v~~~~~-- 472 (538)
.+.|..++........ ..... .. . ..+++.++|++.++...++.|..++.......+ ...-...++++|
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~-~~-p-dgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~ 260 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQ-TN-I-DDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ 260 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEES-CC-C-SSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECC
T ss_pred CCeEEeccccccccccccccccCC-CC-C-cceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcC
Confidence 8889888887643221 11111 11 1 126899999988888889999999865433222 223334567776
Q ss_pred ---CCCEEEEEeCC
Q 009274 473 ---EGKWLFTGGWD 483 (538)
Q Consensus 473 ---~~~~l~sgs~d 483 (538)
|++.|+.++..
T Consensus 261 ~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 261 TEGDCTAIYVVTNG 274 (302)
T ss_dssp STTTTTEEEEEECT
T ss_pred CCCCCCEEEEECCC
Confidence 55666655543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.65 E-value=5.8e-05 Score=67.99 Aligned_cols=233 Identities=10% Similarity=0.156 Sum_probs=144.7
Q ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecC------CcCeEEEEEecCCCCEEEE-EcCCCcEEEEEcc
Q 009274 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGH------DHKVMAVVYVDEDQPLCIS-GDSGGGIFVWSFS 323 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s-~~~dg~i~vwd~~ 323 (538)
.....++++ ++.+++-..++.|++||.+ ++.+..+... ...-..+++.++.+..+++ .+.++.|..++..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 346788987 7777777778899999964 7777766321 1233556666555544443 3455677776643
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe--CCEEEEEe
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC--NGVLYSGS 399 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~~l~s~s 399 (538)
. .....+..... ......++.++++.+++....+.+.+++. +++.+..+ ..+......+++. ++.+++..
T Consensus 102 g----~~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 102 G----QFVRKFGATIL-QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp S----CEEEEECTTTC-SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred c----cceeecCCCcc-cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeec
Confidence 2 11222211111 12224467777887877777788888885 55666665 3455677888887 34666777
Q ss_pred cCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeC-CCcEEEEeC-Ccceeeeccc--cceEEEE--EeC
Q 009274 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRN-DKFMKSMQTH--KGSVFAV--FLE 473 (538)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~-~~~~~~~~~h--~~~v~~~--~~~ 473 (538)
..+.|++||. +++.+.++..........-+++.++|+++++-.. ++.|.+|+. ++.+..+... ......+ .++
T Consensus 176 ~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 176 RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence 7889999996 5666666643222222333689999997776544 457999984 4445554322 1233444 457
Q ss_pred CCEEEEEeCCCeEEEEecCCC
Q 009274 474 GKWLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 474 ~~~l~sgs~dg~v~iwd~~~~ 494 (538)
|.+ ++++.++.|++|.....
T Consensus 255 G~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 255 GSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TEE-EEEETTTEEEEEECSCC
T ss_pred CcE-EEEeCCCeEEEEEeeee
Confidence 764 55567899999998654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=4.8e-05 Score=67.84 Aligned_cols=218 Identities=9% Similarity=0.056 Sum_probs=117.6
Q ss_pred cEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecC
Q 009274 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG 352 (538)
Q Consensus 273 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (538)
.|.|-|.+. .....+..+...+...+|||+++.++++....+.-.+|............. ... .......++|++
T Consensus 20 ~l~i~d~dG-~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~spdg 94 (269)
T d2hqsa1 20 ELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFP--RHNGAPAFSPDG 94 (269)
T ss_dssp EEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--CCS--SCEEEEEECTTS
T ss_pred EEEEEcCCC-CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe--eee--cccccceecCCC
Confidence 477777654 444444456677899999999988877776666544444432222111111 111 122345789999
Q ss_pred CEEEEeeC-CCcEE--EEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEEecCCc--EEEEECCCCceeEEEecCCCC
Q 009274 353 RYLYTGSG-DRTIK--AWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDGT--IRLWSLSDHSLLTVLEEDSSG 424 (538)
Q Consensus 353 ~~l~sg~~-dg~i~--iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~ 424 (538)
+.++.... ++... .+.......... ...........++ ++ .+++...++. |...++..+...... .. .
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~--~ 170 (269)
T d2hqsa1 95 SKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WE--G 170 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CS--S
T ss_pred CeeeEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceeee-cc--c
Confidence 97766543 33333 333333322222 2233333444444 33 5555555554 555565554433222 21 2
Q ss_pred ceEEEEEEcCCCCEEEEEeCC-CcEEEE--eCCcceeeeccccceE--EEEEeCCCEEEEEeCC---CeEEEEecCCCee
Q 009274 425 AVSSVLSLTAVQHTLVVSHES-GSIKVW--RNDKFMKSMQTHKGSV--FAVFLEGKWLFTGGWD---KTVSVQELAGDEF 496 (538)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~d-g~i~iw--d~~~~~~~~~~h~~~v--~~~~~~~~~l~sgs~d---g~v~iwd~~~~~~ 496 (538)
.......++|+++.++..+.+ +...+| +..........+.... ..+++||+.|+..+.. ..++++++.++..
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 233336899999988876554 444444 5443333333333333 3456699988765543 4688999988765
Q ss_pred Eee
Q 009274 497 EED 499 (538)
Q Consensus 497 ~~~ 499 (538)
...
T Consensus 251 ~~l 253 (269)
T d2hqsa1 251 ARL 253 (269)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=3e-05 Score=69.12 Aligned_cols=231 Identities=10% Similarity=0.021 Sum_probs=129.9
Q ss_pred CcEEEEEEc--CCEEEEE-eCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 253 DCVTGLAVG--GGFLFSS-SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
..-.+++++ |+..++. +..+.+..++............-......+++.+++ .++++....+.+++++-.+.....
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceeee
Confidence 345788888 6655554 455677777654332222111112334678887754 576776666666665543322111
Q ss_pred ceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEE
Q 009274 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLW 407 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iw 407 (538)
.. .. ......+++.++++++++-..+..+..++..................+++++ ++++++...++.|..+
T Consensus 93 ~~---~~---~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 93 PF---DG---LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp CC---CS---CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred ee---ee---eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence 11 11 1112234677788877776666778777765543322222223445788887 4566777778889999
Q ss_pred ECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeecc--ccceEEEEEe--CCCEEEEEeCC
Q 009274 408 SLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQT--HKGSVFAVFL--EGKWLFTGGWD 483 (538)
Q Consensus 408 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--h~~~v~~~~~--~~~~l~sgs~d 483 (538)
|....... .+......... -+++.++|+++++....+.|..++.......... .-.....+++ +|+++++-..+
T Consensus 167 d~~~~~~~-~~~~~~~~~p~-gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 167 EAESNNQV-VLPFTDITAPW-GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp CTTTCCEE-ECCCSSCCSEE-EEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred ccccceee-eeeccccCCCc-cceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence 97654433 33222222233 3689999998888888888988885443222221 1123345555 66776665666
Q ss_pred CeEEEEecC
Q 009274 484 KTVSVQELA 492 (538)
Q Consensus 484 g~v~iwd~~ 492 (538)
++|+.++..
T Consensus 245 ~rI~~i~~~ 253 (260)
T d1rwia_ 245 DRVVKLTSL 253 (260)
T ss_dssp TEEEEECCC
T ss_pred CEEEEEeCC
Confidence 666655543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.41 E-value=4.3e-05 Score=68.04 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=126.4
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCc
Q 009274 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (538)
Q Consensus 294 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 373 (538)
.-.++++.+++..+++..+..+.+..++....... ...... .....-+++.++++.+++....+.+++++-.+..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~--~~~~~~---~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~ 89 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNG---LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 89 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEE--ECCCCS---CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE--EeccCC---ccCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence 34788998766544444556677777765532211 111111 1111234778888887777777777776655554
Q ss_pred eeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEE
Q 009274 374 LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (538)
Q Consensus 374 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 451 (538)
.+....+ .....++++. ++++++-..+..+..++....... ........... .++++++++.+++...++.|..+
T Consensus 90 ~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~p~-~i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 90 TVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPD-GVAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp EECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-ECCCCSCCSCC-EEEECTTCCEEEEEGGGTEEEEE
T ss_pred eeeeeee-eeecccccccccceeEeeccccccccccccccceee-eeeecccCCcc-eeeecCCCCEeeecccccccccc
Confidence 4433332 3456889987 445555555666777776554322 22211111222 26888999988888888899999
Q ss_pred eCCc-ceeeec-cccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEE-E
Q 009274 452 RNDK-FMKSMQ-THKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVG-C 526 (538)
Q Consensus 452 d~~~-~~~~~~-~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~ 526 (538)
|... ....+. ........+++ +|+++++....+.|..++..+....... ... ...+....+.+++.|+.+ .
T Consensus 167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~--~~~--~~~P~~i~~d~~g~l~vad~ 242 (260)
T d1rwia_ 167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP--FTG--LNTPLAVAVDSDRTVYVADR 242 (260)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC--CCS--CCCEEEEEECTTCCEEEEEG
T ss_pred ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc--cCC--CCCeEEEEEeCCCCEEEEEC
Confidence 8553 222222 23334456665 6788777777888998887665432211 111 112233333346666555 4
Q ss_pred CCCeEEEE
Q 009274 527 ADRTVKVY 534 (538)
Q Consensus 527 ~dg~v~vw 534 (538)
.++.|+.+
T Consensus 243 ~~~rI~~i 250 (260)
T d1rwia_ 243 GNDRVVKL 250 (260)
T ss_dssp GGTEEEEE
T ss_pred CCCEEEEE
Confidence 45555543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.31 E-value=8.2e-07 Score=87.32 Aligned_cols=146 Identities=8% Similarity=0.039 Sum_probs=98.4
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC---------CCcEEE
Q 009274 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG---------DRTIKA 366 (538)
Q Consensus 296 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---------dg~i~i 366 (538)
..+.|.+++. ++. ..|+.+.+||..+++....+................++||+++|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDHE-YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSSE-EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cCCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 3567887554 443 4578999999998775433322111111112234579999999888753 567899
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCce----------------EE
Q 009274 367 WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV----------------SS 428 (538)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------~~ 428 (538)
||+.+++. ..+..|...+..+.|+ +..++. ..++.+++|+..+++..+.......... ..
T Consensus 97 ~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 97 YDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp EETTTTEE-CCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EECCCCcc-cccccCCccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 99998764 5577889999999999 446666 4678899999998876654432221111 12
Q ss_pred EEEEcCCCCEEEEEeCCC
Q 009274 429 VLSLTAVQHTLVVSHESG 446 (538)
Q Consensus 429 ~~~~~~~~~~l~~~~~dg 446 (538)
.++|+|||+.|+....|.
T Consensus 175 ~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp CEEECTTSSEEEEEEEEC
T ss_pred ccEECCCCCccceeEecC
Confidence 257999999999887553
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.19 E-value=0.0013 Score=59.82 Aligned_cols=235 Identities=14% Similarity=0.096 Sum_probs=132.9
Q ss_pred EEEEEEc--CCEEEEEeC-------CCcEEEEeCCCCceEEEEecC----CcCeEEEEEecCCCCEEEEEcCCCcEEEEE
Q 009274 255 VTGLAVG--GGFLFSSSF-------DKSIHVWSLKDFSHVHTFKGH----DHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (538)
Q Consensus 255 V~~l~~~--~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 321 (538)
..+++|+ |+++++... +|+|..||..+++........ .+.-..++|.++++.+ ++++..+.+...+
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l-~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL-FVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE-EEEETTTEEEEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEE-EEEECCCeEEEEe
Confidence 3456776 555554322 467889998887654433221 1235679998866544 4555556677777
Q ss_pred ccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC---------------CCcEEEEECCCCceeEEecCCCCCeE
Q 009274 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG---------------DRTIKAWSLLDGTLSCTMSGHKSAVS 386 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~ 386 (538)
.............. ........-..+.++|++.++-.. +|.|+.++. .++...... .-..-+
T Consensus 99 ~~g~~~~~~~~~~~-g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~~pN 175 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSE-GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQFPN 175 (314)
T ss_dssp TTSCEEECCSBCTT-SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EESSEE
T ss_pred CCCcEEEEEecccc-ccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Ccceee
Confidence 65432111111111 111111122467778876665322 234555553 233322222 223346
Q ss_pred EEEEe--CC-----EEEEEecCCcEEEEECCCCceeEE------EecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 009274 387 TLAVC--NG-----VLYSGSRDGTIRLWSLSDHSLLTV------LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (538)
Q Consensus 387 ~l~~~--~~-----~l~s~s~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 453 (538)
.++|+ ++ +.++-+..+.|..||+.....+.. +...... ...-+++..+|++.++....+.|.+||.
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG-GADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC-EEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc-cceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 78887 22 444556778899988764433221 1111112 2233789999998888888899999995
Q ss_pred C--cceeeeccccceEEEEEe--CCC-EEEEEeCCCeEEEEecCCC
Q 009274 454 D--KFMKSMQTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGD 494 (538)
Q Consensus 454 ~--~~~~~~~~h~~~v~~~~~--~~~-~l~sgs~dg~v~iwd~~~~ 494 (538)
. .....+........+++| +++ ++++.+.+|.|...++...
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 4 345556655566777887 665 5566677888888887543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.17 E-value=0.00067 Score=63.36 Aligned_cols=244 Identities=9% Similarity=0.082 Sum_probs=130.6
Q ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEc--CCCcEEEEEccC
Q 009274 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGD--SGGGIFVWSFSF 324 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~ 324 (538)
+...+.-++++ +++|+++.. +.+..|.+.....+.... ........+.++++++.++++.. ..+.+..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 44556679998 788877764 567788765322222221 12223345556665554433332 245555554432
Q ss_pred CCCCc-------------ceeeecccCCceeeeEEEEeecCCEEEEeeC-CCcEEEEECCCC-cee--EEe--cCCCCCe
Q 009274 325 PLGHE-------------PLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDG-TLS--CTM--SGHKSAV 385 (538)
Q Consensus 325 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~-~~~--~~~--~~h~~~v 385 (538)
..... .......... .......++|+|+++++++. ...|.+|+.... ... ... .......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~-~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQEN-TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTT-CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCcceeEeeeecceecCcccCcccCCC-CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 11100 0000000111 11224688999998877764 457888876533 222 121 2234567
Q ss_pred EEEEEe--CCEE-EEEecCCcEEEEECCCCceeEEEe-----cC------------CCCceEEEEEEcCCCCEEEEEeC-
Q 009274 386 STLAVC--NGVL-YSGSRDGTIRLWSLSDHSLLTVLE-----ED------------SSGAVSSVLSLTAVQHTLVVSHE- 444 (538)
Q Consensus 386 ~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~l~~~~~- 444 (538)
..++|+ ++++ ++...+++|.+||+..++...... .. ........+.++|+|++|+++..
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 899999 3344 555578999999997765322111 00 00112334689999999988743
Q ss_pred -----CCcEEEEeCCcc--ee-ee-----ccccceE--EEEEe-CCCEEEEEe-CCCeEEEEecCCCee
Q 009274 445 -----SGSIKVWRNDKF--MK-SM-----QTHKGSV--FAVFL-EGKWLFTGG-WDKTVSVQELAGDEF 496 (538)
Q Consensus 445 -----dg~i~iwd~~~~--~~-~~-----~~h~~~v--~~~~~-~~~~l~sgs-~dg~v~iwd~~~~~~ 496 (538)
.+.|..|+..+. +. .. ......- .++++ +|++|+++. .++.|.+|+++....
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence 223777764421 11 11 1111122 34455 788776665 678999999876654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.13 E-value=0.003 Score=57.52 Aligned_cols=227 Identities=10% Similarity=0.020 Sum_probs=129.7
Q ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcC--CCcEEEEEccCCCC
Q 009274 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFSFPLG 327 (538)
Q Consensus 252 ~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~ 327 (538)
...+..++|+ |++.++-...+.|..|+.++++....+.........+++.+++ .++++... .....++.+.....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCc
Confidence 3455688997 7777777788999999988877666666666778999998865 45555432 23333443332211
Q ss_pred CcceeeecccCCceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEE-EEE
Q 009274 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVL-YSG 398 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~ 398 (538)
... .............-..+.++|++.++... .+.+..++...+ .+..+...-...+.++|+ ++.| ++-
T Consensus 118 ~~~-~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 118 NLQ-DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp SCE-EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred eee-eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEec
Confidence 111 11111111111223467788876555322 233555554433 333332223345789998 3444 555
Q ss_pred ecCCcEEEEECCCC-ceeEEE-----ecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC-Ccceeeec------cccc
Q 009274 399 SRDGTIRLWSLSDH-SLLTVL-----EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSMQ------THKG 465 (538)
Q Consensus 399 s~dg~i~iwd~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~------~h~~ 465 (538)
+..+.|..||+... ...... ..........-+++..+|++.++....+.|.+||. ++.+..+. ++..
T Consensus 196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHML 275 (319)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSC
T ss_pred ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCc
Confidence 67889999998643 221111 11111112334799999999888889999999994 34455443 2334
Q ss_pred eEEEEEe--CCCEEEEEe
Q 009274 466 SVFAVFL--EGKWLFTGG 481 (538)
Q Consensus 466 ~v~~~~~--~~~~l~sgs 481 (538)
.+.++.+ ++..+++.+
T Consensus 276 ~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 276 RSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp BCCEEEECTTSCEEEEEE
T ss_pred eeeeEEEeCCCCEEEEEc
Confidence 5667776 444454443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.13 E-value=0.00047 Score=62.58 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=128.4
Q ss_pred ceeeeeccCcceeEEeecCCeEEEEE-------eecCCCcEEEEEEc--CCEEEEEeCCCcEEEEeCCCCc--eEEEE-e
Q 009274 222 IDQARAAGGVKDLVNGLSKGNVKFKD-------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTF-K 289 (538)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~-------l~~h~~~V~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~-~ 289 (538)
+..+.+.+++..+++...++.+..++ +......+.+++++ |+++++...++.+..|+..... ..... .
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL 109 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc
Confidence 44556666766666666666543332 34456788999998 8888888888888888765432 22211 1
Q ss_pred cCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeec---ccCCceeeeEEEEeecCC-EEEEeeCCCcEE
Q 009274 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN---EEKDWRYSGIHALTTSGR-YLYTGSGDRTIK 365 (538)
Q Consensus 290 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~ 365 (538)
........+++.++ +.++++-+.++.+..+|...+.......... ............+.++++ .+++.+..+.|+
T Consensus 110 ~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~ 188 (302)
T d2p4oa1 110 PDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL 188 (302)
T ss_dssp TTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEE
T ss_pred CCccccceeEEccC-CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEE
Confidence 24456788888775 4577777778888888766542111110000 000001112234455555 555566788898
Q ss_pred EEECCCCceeEE--ecCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEE---cCCCCE
Q 009274 366 AWSLLDGTLSCT--MSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL---TAVQHT 438 (538)
Q Consensus 366 iwd~~~~~~~~~--~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 438 (538)
.++......... ..........++++ ++++++...++.|..++.. ++................++| ++|++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~ 267 (302)
T d2p4oa1 189 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTA 267 (302)
T ss_dssp EEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred eccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCE
Confidence 888765432211 11123345678888 4566666678889999875 443333322212222334688 678888
Q ss_pred EEEEeCCC
Q 009274 439 LVVSHESG 446 (538)
Q Consensus 439 l~~~~~dg 446 (538)
|++++..+
T Consensus 268 Lyvtt~~g 275 (302)
T d2p4oa1 268 IYVVTNGG 275 (302)
T ss_dssp EEEEECTT
T ss_pred EEEECCCC
Confidence 87766543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.09 E-value=0.0014 Score=59.56 Aligned_cols=235 Identities=9% Similarity=0.028 Sum_probs=122.9
Q ss_pred cCeEEEEEecCCCCEEEEEcC-------CCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEE
Q 009274 293 HKVMAVVYVDEDQPLCISGDS-------GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (538)
Q Consensus 293 ~~v~~l~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 365 (538)
.....++|.+++. ++++... +|+|..||..++.............. ....-+.+.++++.++++...+.|.
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~-g~P~Gl~~~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-GIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-CCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCC-CcceeEEEeCCCCEEEEEECCCeEE
Confidence 3456778888665 4443322 46788888765432111111000000 1122457888898888887777899
Q ss_pred EEECCCCceeEEecCCCC----CeEEEEEe-CC-EEEEEec---------------CCcEEEEECCCCceeEEEecCCCC
Q 009274 366 AWSLLDGTLSCTMSGHKS----AVSTLAVC-NG-VLYSGSR---------------DGTIRLWSLSDHSLLTVLEEDSSG 424 (538)
Q Consensus 366 iwd~~~~~~~~~~~~h~~----~v~~l~~~-~~-~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~ 424 (538)
.+|..............+ ..+.+++. ++ +.++-.. +|.|..++. .++.......- .
T Consensus 96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~-~- 172 (314)
T d1pjxa_ 96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAF-Q- 172 (314)
T ss_dssp EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEE-S-
T ss_pred EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCc-c-
Confidence 999765433221111111 25678887 33 4444221 233444443 23333222211 1
Q ss_pred ceEEEEEEcCCCC-----EEEEEeCCCcEEEEeCCc--ce------eeecc-ccceEEEEEe--CCCEEEEEeCCCeEEE
Q 009274 425 AVSSVLSLTAVQH-----TLVVSHESGSIKVWRNDK--FM------KSMQT-HKGSVFAVFL--EGKWLFTGGWDKTVSV 488 (538)
Q Consensus 425 ~~~~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~--~~------~~~~~-h~~~v~~~~~--~~~~l~sgs~dg~v~i 488 (538)
...-+++++++. +.++-+..+.|..||... .+ ..+.. +....-.+++ +|++.++....+.|.+
T Consensus 173 -~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 173 -FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp -SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred -eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence 112257777654 444556778888887432 11 11111 1122334554 7888888778899999
Q ss_pred EecCCCeeEeeeecCCcccCCCceEEEEEeCC-EE-EEEECCCeEEEEEcC
Q 009274 489 QELAGDEFEEDVIPTGAIPCGSVITALLYWQG-KL-FVGCADRTVKVYYYG 537 (538)
Q Consensus 489 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~sg~~dg~v~vw~~~ 537 (538)
||.+++......... ...+..+++-+++ .| ++.+.+|.|...++.
T Consensus 252 ~dp~~g~~~~~i~~p----~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 252 FGPDGGQPKMRIRCP----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCBSCSEEEECS----SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EeCCCCEEEEEEECC----CCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 999877654333221 2223334443444 34 556677888877753
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=0.0033 Score=55.23 Aligned_cols=214 Identities=11% Similarity=0.101 Sum_probs=120.3
Q ss_pred ecCCCcEEEEEEc--CCEEEEEeCCC---cEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 249 QGHRDCVTGLAVG--GGFLFSSSFDK---SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 249 ~~h~~~V~~l~~~--~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
..+...+.+.+|| |+.||-..... .+.+.+...+.. ..+..+........|+|++..++.....++...++...
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~ 113 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 113 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence 3456778899999 89988765443 366667665554 44556778889999999888887777666666655544
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCC-EEEEeeCCC--cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDR--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (538)
.......... ... .......++++++ .+++...+| .|...++..+... .+..+........|+ +..++..
T Consensus 114 ~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~ 188 (269)
T d2hqsa1 114 LASGQIRQVT--DGR--SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMV 188 (269)
T ss_dssp TTTCCEEECC--CCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEE
T ss_pred cccccceeee--ecc--ccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEE
Confidence 3322111111 111 1112234555666 444444455 4556666555433 334455666777887 3455544
Q ss_pred -ecCCcEEEE--ECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeC---CCcEEEEeCCc-ceeeeccccceEEEEE
Q 009274 399 -SRDGTIRLW--SLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE---SGSIKVWRNDK-FMKSMQTHKGSVFAVF 471 (538)
Q Consensus 399 -s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~~~~~~~h~~~v~~~~ 471 (538)
...+...+| |...+.. ...... .... ...|+|||+.|+..+. ...|++++... ....+....+.+...+
T Consensus 189 ~~~~~~~~i~~~~~~~~~~--~~~~~~-~~~~-~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~ 264 (269)
T d2hqsa1 189 SSNGGQQHIAKQDLATGGV--QVLSST-FLDE-TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPA 264 (269)
T ss_dssp EECSSCEEEEEEETTTCCE--EECCCS-SSCE-EEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEE
T ss_pred eecCCceeeeEeecccccc--eEeecC-cccc-ceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEE
Confidence 444444444 4444432 222222 2222 2589999998875543 34577777543 3444555555555544
Q ss_pred e
Q 009274 472 L 472 (538)
Q Consensus 472 ~ 472 (538)
|
T Consensus 265 W 265 (269)
T d2hqsa1 265 W 265 (269)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.95 E-value=0.0012 Score=61.53 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=93.9
Q ss_pred CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee-CCCcEEEEECC
Q 009274 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-GDRTIKAWSLL 370 (538)
Q Consensus 292 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~iwd~~ 370 (538)
...+.++.|+|++..++++......|.+|+.......................-..++++++++++.. .+++|.+|+..
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 34578999999888777766667789998876543322222221111111223458899999775554 57899999987
Q ss_pred CCceeE--E---ec--------------CCCCCeEEEEEe--CCEEEEEec-C-----CcEEEEECCCCceeEEE----e
Q 009274 371 DGTLSC--T---MS--------------GHKSAVSTLAVC--NGVLYSGSR-D-----GTIRLWSLSDHSLLTVL----E 419 (538)
Q Consensus 371 ~~~~~~--~---~~--------------~h~~~v~~l~~~--~~~l~s~s~-d-----g~i~iwd~~~~~~~~~~----~ 419 (538)
.++... . .. .+......+.++ +++|+++.. + ..|..|++.....+... .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 654321 1 10 111234567777 456666542 2 23777777653322211 1
Q ss_pred cCCCCceEEEEEEcC-CCCEEEEEe-CCCcEEEEeCC
Q 009274 420 EDSSGAVSSVLSLTA-VQHTLVVSH-ESGSIKVWRND 454 (538)
Q Consensus 420 ~~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~iwd~~ 454 (538)
....+.....++++| +|++|+++. .++.|.+|+..
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 111111122267887 789877764 67899999743
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.88 E-value=0.0074 Score=54.05 Aligned_cols=209 Identities=9% Similarity=0.076 Sum_probs=123.1
Q ss_pred EEEEc---CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceee
Q 009274 257 GLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (538)
Q Consensus 257 ~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (538)
+..|+ +.+..+=-..+.|..||.++++.. .+. ....+.++++.+++ .++++ +. ..+.++|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg-~l~va-~~-~gl~~~d~~tg~~~~l~~- 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS-KQLIA-SD-DGLFLRDTATGVLTLHAE- 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT-EEEEE-ET-TEEEEEETTTCCEEEEEC-
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCC-CEEEE-Ee-CccEEeecccceeeEEee-
Confidence 34455 334444445678999998887643 333 34567888887754 45444 44 458889988764322111
Q ss_pred ecccCCceeeeEEEEeecCCEEEEeeC----CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEEecCCcEEE
Q 009274 334 WNEEKDWRYSGIHALTTSGRYLYTGSG----DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDGTIRL 406 (538)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~i 406 (538)
...........-..+.++|++.++... .+.-.+|.+..++....... -..-+.++|+ ++ ++++-+..+.|..
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence 111111122223356778875554432 23445666666655444432 3345788888 33 5566677888999
Q ss_pred EECCCC------ceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeC-CcceeeeccccceEEEEEe
Q 009274 407 WSLSDH------SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSMQTHKGSVFAVFL 472 (538)
Q Consensus 407 wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~h~~~v~~~~~ 472 (538)
+++... +...............-+++..+|++.++....+.|..||. ++.+..+......+++++|
T Consensus 175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~F 247 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAF 247 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEE
T ss_pred eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEE
Confidence 987432 11111222112223344788999998888878889999994 5666777666667889988
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.72 E-value=0.0035 Score=62.01 Aligned_cols=275 Identities=15% Similarity=0.042 Sum_probs=150.1
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCC----cCeEEEEEecCCCCEEEEEc-----CCCcEEEEEccCCCC
Q 009274 257 GLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD----HKVMAVVYVDEDQPLCISGD-----SGGGIFVWSFSFPLG 327 (538)
Q Consensus 257 ~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~ 327 (538)
.+++.+..++.++.|+.+.-.|.++|+.+....... ..++.--... ++.+++.++ .+|.|+-+|..+++.
T Consensus 110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~ 188 (571)
T d2ad6a1 110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred cceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcE
Confidence 456777888889999999999999999988765321 1111110111 233333222 367899999988765
Q ss_pred Ccceeeeccc---------------------------------CCceeeeEEEEeecCCEEEEeeC--------------
Q 009274 328 HEPLKKWNEE---------------------------------KDWRYSGIHALTTSGRYLYTGSG-------------- 360 (538)
Q Consensus 328 ~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~l~sg~~-------------- 360 (538)
.......... .....-...++.+....++.+..
T Consensus 189 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n 268 (571)
T d2ad6a1 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccc
Confidence 4432221100 00001112355566665555543
Q ss_pred --CCcEEEEECCCCceeEEecCCCCCeE-----------EEEEeCC---EEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 009274 361 --DRTIKAWSLLDGTLSCTMSGHKSAVS-----------TLAVCNG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424 (538)
Q Consensus 361 --dg~i~iwd~~~~~~~~~~~~h~~~v~-----------~l~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 424 (538)
...+...|.++|+.+..++.+...+. .+...++ .++.++.+|.+.++|..+++.+.........
T Consensus 269 ~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~ 348 (571)
T d2ad6a1 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred ccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence 35688899999999988864322211 2222222 5778899999999999999987554322111
Q ss_pred ceE-------------------------------------EEEEEcCCCCEEEEEeCCCcEEEEeCCcceeeeccccceE
Q 009274 425 AVS-------------------------------------SVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSV 467 (538)
Q Consensus 425 ~~~-------------------------------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v 467 (538)
... ...+++|+..++++...+..............-.......
T Consensus 349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (571)
T d2ad6a1 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence 000 0124455555555555443322221111110000011111
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEEEEEECCCeEEEEEcC
Q 009274 468 FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKVYYYG 537 (538)
Q Consensus 468 ~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~ 537 (538)
..+.+... .......|.+.-+|+.+++.............+ .+...++.+++|+.||.++-+|-+
T Consensus 429 ~~~~~~~~-~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g----~l~TagglVf~G~~dg~l~A~Da~ 493 (571)
T d2ad6a1 429 LAMYPGPN-GPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG----TLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp EEEEECTT-STTSCCCEEEEEECTTTCCEEEEEEESSCCCSB----CEEETTTEEEEECTTSEEEEEETT
T ss_pred eeeccccC-CcccCCcccEEEeccCCCceeeEcCCCCCCCcc----eeEecCCEEEEECCCCeEEEEECC
Confidence 11111100 011223478999999999988776654332221 223457888899999999988865
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.70 E-value=0.03 Score=55.26 Aligned_cols=190 Identities=11% Similarity=0.028 Sum_probs=110.1
Q ss_pred CCEEEEEeCCCcEEEEeC-CCCceEEEEecCCc----------C-eEEEEEecCC---CCEEEEEcCCCcEEEEEccCCC
Q 009274 262 GGFLFSSSFDKSIHVWSL-KDFSHVHTFKGHDH----------K-VMAVVYVDED---QPLCISGDSGGGIFVWSFSFPL 326 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~h~~----------~-v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~ 326 (538)
+.++++++.++.+...|. ++|+.+..+..... . -..+++.+.+ ..+++.++.|+.+.-.|.++++
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~ 142 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence 444455566788888887 58999998752211 0 1345555432 3467888899999999988876
Q ss_pred CCcceeeecccCCceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCCC------------------
Q 009274 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHK------------------ 382 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~------------------ 382 (538)
.................. +-...++.+++|.. .|.|+-+|+++|+.++++....
T Consensus 143 ~~w~~~~~d~~~~~~~t~--~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~ 220 (596)
T d1w6sa_ 143 TVWKVENSDIKVGSTLTI--APYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (596)
T ss_dssp EEEEEECCCGGGTCBCCS--CCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred eecccccccccccccccc--CCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccc
Confidence 554432211111111110 11112556666653 4899999999999998764211
Q ss_pred -------------------CCe-EEEEEe--CCEEEEEec----------------CCcEEEEECCCCceeEEEecCCCC
Q 009274 383 -------------------SAV-STLAVC--NGVLYSGSR----------------DGTIRLWSLSDHSLLTVLEEDSSG 424 (538)
Q Consensus 383 -------------------~~v-~~l~~~--~~~l~s~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~ 424 (538)
..+ ..++++ .++++.+.. ...|.-.|+++++.+..++..+..
T Consensus 221 g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D 300 (596)
T d1w6sa_ 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD 300 (596)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceecc
Confidence 111 123333 445555433 245888999999998877653321
Q ss_pred --------ceEEEEEEcCCC---CEEEEEeCCCcEEEEeC
Q 009274 425 --------AVSSVLSLTAVQ---HTLVVSHESGSIKVWRN 453 (538)
Q Consensus 425 --------~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~ 453 (538)
.....-....++ ..++.+..+|.+.++|.
T Consensus 301 ~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr 340 (596)
T d1w6sa_ 301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (596)
T ss_dssp SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred ccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence 111111122344 35777788888888883
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.68 E-value=0.018 Score=52.09 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=106.7
Q ss_pred CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC----CCcEEEE
Q 009274 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG----DRTIKAW 367 (538)
Q Consensus 292 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----dg~i~iw 367 (538)
...+..++|.+++ ++.++-...+.|+.|+..+........ .... ....+++.++|+++++... .+.+...
T Consensus 39 ~~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~---~~~~--~p~gla~~~dG~l~va~~~~~~~~~~i~~~ 112 (319)
T d2dg1a1 39 GLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFV---SHKA--NPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 112 (319)
T ss_dssp CCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEE---CSSS--SEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred CcCcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEe---CCCC--CeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence 3445678887654 466777778888888765432211111 1111 1124577888887766543 2345556
Q ss_pred ECCCCceeEEecC--CCCCeEEEEEe-CCEEEEEecC-------CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC
Q 009274 368 SLLDGTLSCTMSG--HKSAVSTLAVC-NGVLYSGSRD-------GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH 437 (538)
Q Consensus 368 d~~~~~~~~~~~~--h~~~v~~l~~~-~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (538)
+............ -....+.+++. ++.++.+..+ +.+..++...+. +..+... -. ...-++++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~-~~-~pnGia~s~dg~ 189 (319)
T d2dg1a1 113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQN-IS-VANGIALSTDEK 189 (319)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEE-ES-SEEEEEECTTSS
T ss_pred cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeec-cc-eeeeeeeccccc
Confidence 6555544433321 12346778887 4444444332 235555544333 2222211 11 223379999998
Q ss_pred EEEEE-eCCCcEEEEeCCc---ceeeecc-------ccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCee
Q 009274 438 TLVVS-HESGSIKVWRNDK---FMKSMQT-------HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEF 496 (538)
Q Consensus 438 ~l~~~-~~dg~i~iwd~~~---~~~~~~~-------h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~ 496 (538)
.|+.+ +..+.|..||... ....... ....--.++. +|++.++...++.|.+||.....+
T Consensus 190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l 261 (319)
T d2dg1a1 190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPI 261 (319)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEE
T ss_pred eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEE
Confidence 76554 5678999998432 1111100 0111233444 888888888899999999765443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.46 E-value=0.03 Score=48.92 Aligned_cols=229 Identities=7% Similarity=0.029 Sum_probs=115.6
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCC-----cEEEEEccCCCCCcceeeec
Q 009274 261 GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG-----GIFVWSFSFPLGHEPLKKWN 335 (538)
Q Consensus 261 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~ 335 (538)
+|+.++-.+ +|.|.+.|+.+++.. .+..+.+.+...+|+|++..++++...++ .|.+++..++..........
T Consensus 11 ~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~ 88 (281)
T d1k32a2 11 HGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSG 88 (281)
T ss_dssp ETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCE
T ss_pred CCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCC
Confidence 367776654 456888899887754 56667788899999998887776654433 35566655443222111100
Q ss_pred c-cCCceeeeEEEEeecCCEEEEeeCC------CcEEEEECCCCceeEEecCCCCCeEEEEEeCC--EEEEEecCC----
Q 009274 336 E-EKDWRYSGIHALTTSGRYLYTGSGD------RTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDG---- 402 (538)
Q Consensus 336 ~-~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg---- 402 (538)
. ...........++|+++.++..... ..+...+...+..... +........+.++ .++....+.
T Consensus 89 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (281)
T d1k32a2 89 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWK 165 (281)
T ss_dssp EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceee
Confidence 0 0001122345788999977765332 2345555544443322 2222233333322 222221111
Q ss_pred -------cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCC--cEEEEeCCc-ceeeec-cccceEEEEE
Q 009274 403 -------TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG--SIKVWRNDK-FMKSMQ-THKGSVFAVF 471 (538)
Q Consensus 403 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~-~~~~~~-~h~~~v~~~~ 471 (538)
................... .. ... ..+.++ ..+.....++ .|.++|... ..+.+. .....+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~S 241 (281)
T d1k32a2 166 GYRGGTRGKIWIEVNSGAFKKIVDMS-TH-VSS-PVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLN 241 (281)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCS-SC-CEE-EEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEE
T ss_pred eeccCCcceeeeeccccceeeccCCc-cc-cce-eeeecc-ccceecccccccceEEEeCCCCceEEeecCCCcccccCc
Confidence 1112222222222222111 11 111 233333 2333333333 455666442 333333 2334566788
Q ss_pred eCCCEEEEEeCCCeEEEEecCCCeeEee
Q 009274 472 LEGKWLFTGGWDKTVSVQELAGDEFEED 499 (538)
Q Consensus 472 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 499 (538)
+||+.|+.. .++.|+++|+.+++....
T Consensus 242 pDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 242 TDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp ESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 899988764 468899999998886554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.41 E-value=0.05 Score=53.25 Aligned_cols=270 Identities=12% Similarity=0.063 Sum_probs=150.7
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCc----------Ce-EEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 009274 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----------KV-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (538)
Q Consensus 260 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----------~v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (538)
+.+..++.++.++.|.-.|.++|+.+..+..... .+ ..++.. +..++.+..|+.+.-.|..+++..
T Consensus 64 v~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~g~l~Alda~tG~~~ 140 (560)
T d1kv9a2 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAI 140 (560)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee---CCeEEEEeCCCEEEEEECCCCcEE
Confidence 3367777888899999999999999998752211 00 112221 224677777888888887776544
Q ss_pred cceeeecccCCceeeeEEEEeecCCEEEEeeC------CCcEEEEECCCCceeEEecCC---------------------
Q 009274 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGH--------------------- 381 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h--------------------- 381 (538)
................ .-.- .+..++.+.. .|.|..+|.++|+.+.++..-
T Consensus 141 w~~~~~~~~~~~~~~~-~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~ 218 (560)
T d1kv9a2 141 WSQQTTDPAKPYSITG-APRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (560)
T ss_dssp EEEECSCTTSSCBCCS-CCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eccCccCcccceeeee-eeee-ecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccc
Confidence 3332211111110000 0111 1334455432 367999999999999887421
Q ss_pred ---------CCCeE-EEEEe--CCEEEEEec-------------------CCcEEEEECCCCceeEEEecCCCCce----
Q 009274 382 ---------KSAVS-TLAVC--NGVLYSGSR-------------------DGTIRLWSLSDHSLLTVLEEDSSGAV---- 426 (538)
Q Consensus 382 ---------~~~v~-~l~~~--~~~l~s~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~---- 426 (538)
...+. .+++. .++++.+.. ...|.-.|+++++....++..+....
T Consensus 219 ~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~ 298 (560)
T d1kv9a2 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (560)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccc
Confidence 01111 12333 334443321 24577889999998877765432211
Q ss_pred ---EEEEEEcCCC---CEEEEEeCCCcEEEEeCC--cceeeecc------------------------------------
Q 009274 427 ---SSVLSLTAVQ---HTLVVSHESGSIKVWRND--KFMKSMQT------------------------------------ 462 (538)
Q Consensus 427 ---~~~~~~~~~~---~~l~~~~~dg~i~iwd~~--~~~~~~~~------------------------------------ 462 (538)
.....+..++ ..++.++.+|.+.++|.. +++.....
T Consensus 299 ~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 378 (560)
T d1kv9a2 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (560)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccc
Confidence 1112333344 356778889999999843 32211100
Q ss_pred --ccceEEEEEeCCCEEEEEeC------------------------------------CCeEEEEecCCCeeEeeeecCC
Q 009274 463 --HKGSVFAVFLEGKWLFTGGW------------------------------------DKTVSVQELAGDEFEEDVIPTG 504 (538)
Q Consensus 463 --h~~~v~~~~~~~~~l~sgs~------------------------------------dg~v~iwd~~~~~~~~~~~~~~ 504 (538)
+.-.-.+..++...++.... .|.+.-||+.+++.........
T Consensus 379 Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~ 458 (560)
T d1kv9a2 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (560)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC
Confidence 00001122333333333221 2578899999999888766543
Q ss_pred cccCCCceEEEEEeCCEEEEEECCCeEEEEEcCC
Q 009274 505 AIPCGSVITALLYWQGKLFVGCADRTVKVYYYGK 538 (538)
Q Consensus 505 ~~~~~~~~~~~~~~~~~l~sg~~dg~v~vw~~~~ 538 (538)
.... ..+...++.+++|+.||.++-+|..+
T Consensus 459 ~~~g----g~l~TagglVF~G~~dg~l~A~Da~t 488 (560)
T d1kv9a2 459 HWNG----GTLSTAGNLVFQGTAAGQMHAYSADK 488 (560)
T ss_dssp SCCC----CEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCC----ceeEECCCEEEEECCCCcEEEEECCC
Confidence 3221 22344578889999999999988653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.28 E-value=0.098 Score=51.09 Aligned_cols=273 Identities=12% Similarity=0.074 Sum_probs=150.7
Q ss_pred cceeEEeecCCeEEEEEeecCC----------CcE-EEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcC----e
Q 009274 231 VKDLVNGLSKGNVKFKDLQGHR----------DCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK----V 295 (538)
Q Consensus 231 ~~~~~~~~~~~~~~i~~l~~h~----------~~V-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~----v 295 (538)
...++.-.......+|.+..+. ..+ ..++..+..++.+..|+.+.-.|..+|+.+.....+... +
T Consensus 75 ~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~ 154 (560)
T d1kv9a2 75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI 154 (560)
T ss_dssp GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC
T ss_pred CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceee
Confidence 3444444444455678764221 111 234444778899999999999999999999887643211 1
Q ss_pred EEEEEecCCCCEEEEEc------CCCcEEEEEccCCCCCcceeeecccC--------------------------Cceee
Q 009274 296 MAVVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEEK--------------------------DWRYS 343 (538)
Q Consensus 296 ~~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~ 343 (538)
...-..- ++ .++.+. ..|.|.-+|.++++............ ....-
T Consensus 155 ~~~p~v~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W 232 (560)
T d1kv9a2 155 TGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVW 232 (560)
T ss_dssp CSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCC
T ss_pred eeeeeee-cC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcc
Confidence 0000000 12 233332 23668888888776554433221110 00111
Q ss_pred eEEEEeecCCEEEEeeC-------------------CCcEEEEECCCCceeEEecCCCCCe-----------EEEEEeC-
Q 009274 344 GIHALTTSGRYLYTGSG-------------------DRTIKAWSLLDGTLSCTMSGHKSAV-----------STLAVCN- 392 (538)
Q Consensus 344 ~~~~~~~~~~~l~sg~~-------------------dg~i~iwd~~~~~~~~~~~~h~~~v-----------~~l~~~~- 392 (538)
...++.+..++++.+.. ...|...|+++++.+..++.....+ ..+...+
T Consensus 233 ~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~ 312 (560)
T d1kv9a2 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (560)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCc
Confidence 22355555565544321 2467888999999988775433222 1222222
Q ss_pred --CEEEEEecCCcEEEEECCCCceeEEEecCCCCceE----------------------------------EEEEEcCCC
Q 009274 393 --GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS----------------------------------SVLSLTAVQ 436 (538)
Q Consensus 393 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~ 436 (538)
..++.+..+|.+.++|..+++++............ ...+++|+.
T Consensus 313 ~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 392 (560)
T d1kv9a2 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (560)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred eeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCC
Confidence 26778889999999999999987655432110000 013566666
Q ss_pred CEEEEEeCCC------------------------------------cEEEEeCCcceeeeccc-cceE--EEEEeCCCEE
Q 009274 437 HTLVVSHESG------------------------------------SIKVWRNDKFMKSMQTH-KGSV--FAVFLEGKWL 477 (538)
Q Consensus 437 ~~l~~~~~dg------------------------------------~i~iwd~~~~~~~~~~h-~~~v--~~~~~~~~~l 477 (538)
.++++...+. .+.-||..+-...++.. ..+. -.++-.+.++
T Consensus 393 ~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglV 472 (560)
T d1kv9a2 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV 472 (560)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred CeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEE
Confidence 6666654332 23333422211111100 0000 0123357788
Q ss_pred EEEeCCCeEEEEecCCCeeEeeeecCCc
Q 009274 478 FTGGWDKTVSVQELAGDEFEEDVIPTGA 505 (538)
Q Consensus 478 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 505 (538)
+.|+.||.++.+|.++++..........
T Consensus 473 F~G~~dg~l~A~Da~tGe~LW~~~l~~~ 500 (560)
T d1kv9a2 473 FQGTAAGQMHAYSADKGEALWQFEAQSG 500 (560)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred EEECCCCcEEEEECCCCcEeEEEECCCC
Confidence 8999999999999999999888776544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.27 E-value=0.1 Score=51.09 Aligned_cols=272 Identities=10% Similarity=0.065 Sum_probs=150.9
Q ss_pred cceeEEeecCCeEEEEEeecCC----------CcE-EEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcC---eE
Q 009274 231 VKDLVNGLSKGNVKFKDLQGHR----------DCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK---VM 296 (538)
Q Consensus 231 ~~~~~~~~~~~~~~i~~l~~h~----------~~V-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---v~ 296 (538)
...++.-.......+|.++... ..+ ..+.+.++.++.++.|+.+.-.|.++|+.+......... +.
T Consensus 86 ~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~ 165 (573)
T d1kb0a2 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT 165 (573)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB
T ss_pred CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecccCccCCcceEE
Confidence 3444444445556788865221 111 234555778888899999999999999998876542211 11
Q ss_pred ----EEEEecCCCCEEEEEc------CCCcEEEEEccCCCCCcceeeecccCC---------------------------
Q 009274 297 ----AVVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEEKD--------------------------- 339 (538)
Q Consensus 297 ----~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------- 339 (538)
-+.+ ++ .++.++ ..|.|+-+|..+++.............
T Consensus 166 ~~~~p~v~---~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G 241 (573)
T d1kb0a2 166 ITGAPRVF---KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGG 241 (573)
T ss_dssp CCSCCEEE---TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEE
T ss_pred eecceEEE---ec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCC
Confidence 1111 22 334443 246799999888765443322111100
Q ss_pred ceeeeEEEEeecCCEEEEeeC-------------------CCcEEEEECCCCceeEEecCCCC---------Ce--EEEE
Q 009274 340 WRYSGIHALTTSGRYLYTGSG-------------------DRTIKAWSLLDGTLSCTMSGHKS---------AV--STLA 389 (538)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sg~~-------------------dg~i~iwd~~~~~~~~~~~~h~~---------~v--~~l~ 389 (538)
...-...++.+....++.+.. ...|...|.++++....++.... +. ..+.
T Consensus 242 ~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~ 321 (573)
T d1kb0a2 242 GTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK 321 (573)
T ss_dssp CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE
T ss_pred CcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccceeeeccee
Confidence 000112344454444443321 23577888899988877643221 11 1222
Q ss_pred EeC---CEEEEEecCCcEEEEECCCCceeEEEecCCCCce---------------------------------EEEEEEc
Q 009274 390 VCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV---------------------------------SSVLSLT 433 (538)
Q Consensus 390 ~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~ 433 (538)
..+ ..++.++.+|.+.++|..+++.+........... ....+++
T Consensus 322 ~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~d 401 (573)
T d1kb0a2 322 IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (573)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred cCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccC
Confidence 222 2678889999999999999998765543211000 0013567
Q ss_pred CCCCEEEEEeCCCcEEEE-------------------------------------------eCCcceeeecccc-ceE--
Q 009274 434 AVQHTLVVSHESGSIKVW-------------------------------------------RNDKFMKSMQTHK-GSV-- 467 (538)
Q Consensus 434 ~~~~~l~~~~~dg~i~iw-------------------------------------------d~~~~~~~~~~h~-~~v-- 467 (538)
|+...++....+....++ |..+-...++.+. .+.
T Consensus 402 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~g 481 (573)
T d1kb0a2 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG 481 (573)
T ss_dssp TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCC
Confidence 777777766555443333 2111111110000 000
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcc
Q 009274 468 FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI 506 (538)
Q Consensus 468 ~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 506 (538)
-.++..+.++++|+.||.++.+|.++++...........
T Consensus 482 g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~ 520 (573)
T d1kb0a2 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV 520 (573)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCc
Confidence 112336788889999999999999999998887765543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.14 E-value=0.075 Score=47.09 Aligned_cols=189 Identities=10% Similarity=0.029 Sum_probs=108.5
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCcee
Q 009274 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS 375 (538)
Q Consensus 296 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 375 (538)
.+..|.+.++.+..+=-..+.|.-||..++.. ..+.... .....++..++++++ ++.+ .+..+|..+++..
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----~~~~~~~---~~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~ 91 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRK----TVHALPF---MGSALAKISDSKQLI-ASDD-GLFLRDTATGVLT 91 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEEECSS---CEEEEEEEETTEEEE-EETT-EEEEEETTTCCEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeE----EEEECCC---CcEEEEEecCCCEEE-EEeC-ccEEeecccceee
Confidence 34567766666666655677888888775432 1111111 122345666666555 4554 5899999988754
Q ss_pred EEecC----CCCCeEEEEEe-CCEEEEEec-----CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE-eC
Q 009274 376 CTMSG----HKSAVSTLAVC-NGVLYSGSR-----DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HE 444 (538)
Q Consensus 376 ~~~~~----h~~~v~~l~~~-~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 444 (538)
..... ....++.+.+. ++.+..++. .+.-.+|.+..++......... ...-+.++++++.++.+ +.
T Consensus 92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~---~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS---IPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES---SEEEEEECTTSCEEEEEETT
T ss_pred EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC---CcceeeecCCCceEEEeecc
Confidence 43221 12346777777 443444432 2345667666665544443221 23347899999866554 55
Q ss_pred CCcEEEEeCCcc-------e---eeeccccceEEEEEe--CCCEEEEEeCCCeEEEEecCCCee
Q 009274 445 SGSIKVWRNDKF-------M---KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEF 496 (538)
Q Consensus 445 dg~i~iwd~~~~-------~---~~~~~h~~~v~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~ 496 (538)
.+.|..|+.... . ....+..+....+.. +|++.++.-..+.|..||..+...
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~ 232 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHI 232 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEE
T ss_pred cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEe
Confidence 778888874311 1 111223334455555 777777766788999999765544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.12 E-value=0.058 Score=53.13 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=92.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCc----CeE-EEEEecCCCCEEEEEc------CCCcEEEEEccCCCCCcce
Q 009274 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----KVM-AVVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPL 331 (538)
Q Consensus 263 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~ 331 (538)
.+++.++.|+.+.-.|.++|+.+..+..... .++ .-.+. ++ .++.+. ..|.|+-+|..+++.....
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--CC-eEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 4788999999999999999999988853211 111 11111 22 344443 2488999999887765433
Q ss_pred eeeccc---------------------------------CCceeeeEEEEeecCCEEEEeeC----------------CC
Q 009274 332 KKWNEE---------------------------------KDWRYSGIHALTTSGRYLYTGSG----------------DR 362 (538)
Q Consensus 332 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~l~sg~~----------------dg 362 (538)
...... .....-...++.+..+.++.+.. ..
T Consensus 199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~ 278 (596)
T d1w6sa_ 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (596)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence 221100 00001112245555555555533 24
Q ss_pred cEEEEECCCCceeEEecCCCC---------CeEEEEEe---C---CEEEEEecCCcEEEEECCCCceeEEEe
Q 009274 363 TIKAWSLLDGTLSCTMSGHKS---------AVSTLAVC---N---GVLYSGSRDGTIRLWSLSDHSLLTVLE 419 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~---------~v~~l~~~---~---~~l~s~s~dg~i~iwd~~~~~~~~~~~ 419 (538)
.|...|+++|+.+..++.... ...-+... + ..++....+|.+.++|..+++.+...+
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~ 350 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence 588899999999987753221 11222221 2 267888999999999999999876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.066 Score=51.00 Aligned_cols=184 Identities=10% Similarity=0.006 Sum_probs=98.8
Q ss_pred cEEEEEEc--CCEEEEE---------eCCCcEEEEeCCCCceEEEEe--cCCcCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 009274 254 CVTGLAVG--GGFLFSS---------SFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (538)
Q Consensus 254 ~V~~l~~~--~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 320 (538)
.+....++ +++++.. +..+.+.++|+.+++...... .....+....|+|++..++.+. ++.|.+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~ 139 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYC 139 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEE
Confidence 34455566 6666554 335678899999877543322 2334566688999998876654 5678777
Q ss_pred EccCCCCCcceeeeccc------CC-------ceeeeEEEEeecCCEEEEeeCC-Cc-----------------------
Q 009274 321 SFSFPLGHEPLKKWNEE------KD-------WRYSGIHALTTSGRYLYTGSGD-RT----------------------- 363 (538)
Q Consensus 321 d~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~l~sg~~d-g~----------------------- 363 (538)
+..++........-... .. ........|+|||++|+....| ..
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp 219 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence 76654322211110000 00 0112345789999988876432 22
Q ss_pred ----------EEEEECCCCceeEEec------CCCCCeEEEEEe-CCEEEEE--ecC---CcEEEEECCCCceeEEEecC
Q 009274 364 ----------IKAWSLLDGTLSCTMS------GHKSAVSTLAVC-NGVLYSG--SRD---GTIRLWSLSDHSLLTVLEED 421 (538)
Q Consensus 364 ----------i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~l~s~--s~d---g~i~iwd~~~~~~~~~~~~~ 421 (538)
+.++|+.++....... ....-+..+.|. ++.++.. ..+ ..+.++|..+++....+...
T Consensus 220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~ 299 (465)
T d1xfda1 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (465)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence 3444443332211110 111235677887 4433333 222 25888999999876655433
Q ss_pred CCCce---EEEEEEcCCCCEE
Q 009274 422 SSGAV---SSVLSLTAVQHTL 439 (538)
Q Consensus 422 ~~~~~---~~~~~~~~~~~~l 439 (538)
..+.+ .....++++|+.+
T Consensus 300 ~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 300 SEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp CSSCCCCCCCCCEECTTSCSE
T ss_pred CCceEeccCCceeEccCCCee
Confidence 22211 1224788888743
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.90 E-value=0.16 Score=46.61 Aligned_cols=246 Identities=12% Similarity=0.058 Sum_probs=120.0
Q ss_pred EEEEeCCCCceEE--EE-ecCCcCeEEEEEecCCCCEEEEEcCC-CcEEEEEccCCCCCcceeeecccCCceeeeEEEEe
Q 009274 274 IHVWSLKDFSHVH--TF-KGHDHKVMAVVYVDEDQPLCISGDSG-GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (538)
Q Consensus 274 i~iwd~~~~~~~~--~~-~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (538)
+.+||..+++-.. .. ..|.....+.++.++ +.+++.|+.+ ..+.+||..+...... ...... ......++.
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~-g~i~v~Gg~~~~~~~~yd~~~~~w~~~-~~~~~~---r~~~~~~~~ 128 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVA---RGYQSSATM 128 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSC---CSSCEEEEC
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecC-CcEEEeecCCCcceeEecCccCccccc-cccccc---ccccceeee
Confidence 6789998765422 22 234333445566664 4566777654 6899999876533211 111111 112234666
Q ss_pred ecCCEEEEeeCC------CcEEEEECCCCceeEEec---------CCC------CCeEEEEEe-CCEEEEEecCCcEEEE
Q 009274 350 TSGRYLYTGSGD------RTIKAWSLLDGTLSCTMS---------GHK------SAVSTLAVC-NGVLYSGSRDGTIRLW 407 (538)
Q Consensus 350 ~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~---------~h~------~~v~~l~~~-~~~l~s~s~dg~i~iw 407 (538)
.|++.++.|+.+ ..+.+||..+.+-...-. .+. .....+... +..+..+..++.+.++
T Consensus 129 ~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~ 208 (387)
T d1k3ia3 129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY 208 (387)
T ss_dssp TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred cCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEec
Confidence 788988888753 368999988764321100 000 111111111 4456666667777777
Q ss_pred ECCCCceeEEEecC-------CCCceEEEEEEcCCCCEEEEEeCCC--------cEEEEeCC---cceeee------ccc
Q 009274 408 SLSDHSLLTVLEED-------SSGAVSSVLSLTAVQHTLVVSHESG--------SIKVWRND---KFMKSM------QTH 463 (538)
Q Consensus 408 d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~---~~~~~~------~~h 463 (538)
|..+.......... .......++....+++.++.|+... ...+.+.. ...... ...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 288 (387)
T d1k3ia3 209 TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 288 (387)
T ss_dssp CSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC
T ss_pred CcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccc
Confidence 77665433221110 0111122223334566677665321 22333311 111111 001
Q ss_pred cceEEEEE-eCCCEEEEEeCCC-----------eEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCEE-EEEE
Q 009274 464 KGSVFAVF-LEGKWLFTGGWDK-----------TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKL-FVGC 526 (538)
Q Consensus 464 ~~~v~~~~-~~~~~l~sgs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sg~ 526 (538)
...-.++. +++++++.|+.+. .+.+||.++.+...... ...+......++..+|+++ +.|+
T Consensus 289 r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~--~~~~R~~Hs~a~l~~dG~v~v~GG 362 (387)
T d1k3ia3 289 RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP--NSIVRVYHSISLLLPDGRVFNGGG 362 (387)
T ss_dssp CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC--CSSCCCTTEEEEECTTSCEEEEEC
T ss_pred cccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCC--CCCcccceEEEEECCCCEEEEEeC
Confidence 11112233 4889999988531 47899998887543321 1111111223344567764 4555
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.026 Score=54.02 Aligned_cols=141 Identities=8% Similarity=0.022 Sum_probs=86.6
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEee---------CCCcEEEEEC
Q 009274 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS---------GDRTIKAWSL 369 (538)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~---------~dg~i~iwd~ 369 (538)
.|.+++. + +.-..+|.|.+||+.++.....+....... .......++||+++++... ..+.+.++|+
T Consensus 23 ~W~~~~~-~-~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~ 98 (465)
T d1xfda1 23 KWISDTE-F-IYREQKGTVRLWNVETNTSTVLIEGKKIES--LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (465)
T ss_dssp CBSSSSC-B-CCCCSSSCEEEBCGGGCCCEEEECTTTTTT--TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred EEeCCCc-E-EEEeCCCcEEEEECCCCCEEEEEcCccccc--cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEc
Confidence 5766543 3 234567899999998775432222111111 1122457899999877764 3578899999
Q ss_pred CCCceeEEe--cCCCCCeEEEEEe--CCEEEEEecCCcEEEEECCCCceeEEEecCCCCce----------------EEE
Q 009274 370 LDGTLSCTM--SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV----------------SSV 429 (538)
Q Consensus 370 ~~~~~~~~~--~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------~~~ 429 (538)
.+++..... ......+....|+ ++.++-.. ++.|.+.+..++...+.......+.+ ...
T Consensus 99 ~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred cCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence 888754332 2233455567788 44555544 67889988887766655543322211 234
Q ss_pred EEEcCCCCEEEEEeC
Q 009274 430 LSLTAVQHTLVVSHE 444 (538)
Q Consensus 430 ~~~~~~~~~l~~~~~ 444 (538)
++|||||+.|+....
T Consensus 178 ~~WSPDgk~iaf~~~ 192 (465)
T d1xfda1 178 HWWSPDGTRLAYAAI 192 (465)
T ss_dssp EEECTTSSEEEEEEE
T ss_pred EEECCCCCeEEEEEe
Confidence 789999999998753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.75 E-value=0.15 Score=44.20 Aligned_cols=165 Identities=10% Similarity=0.023 Sum_probs=101.0
Q ss_pred CcEEEEEEc--CCEEE-EEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCc
Q 009274 253 DCVTGLAVG--GGFLF-SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (538)
Q Consensus 253 ~~V~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (538)
..+.+++++ ++.|+ +-...+.|.+.+++.......+...-.....++..|..+.++.+-...+.-+|+.........
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence 467888887 55555 555678999999876544333343446788999999888777665443444555433221111
Q ss_pred ceeeecccCCceeeeEEEEeecCCEEEEe-eCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEe-cCCcEEEE
Q 009274 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTG-SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGS-RDGTIRLW 407 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~i~iw 407 (538)
.. ..... ......+++.+.++.|+.+ ...+.|...|+........+.+... ..+|++.++.|+... ..+.|...
T Consensus 159 ~~-i~~~~--~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 159 RI-LAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp EE-EECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEETTEEEEEETTTTEEEEE
T ss_pred ee-eeeec--ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEECCEEEEEECCCCEEEEE
Confidence 11 11111 1111234666666766554 4568899999876554444444333 468888877666554 66889999
Q ss_pred ECCCCceeEEEecC
Q 009274 408 SLSDHSLLTVLEED 421 (538)
Q Consensus 408 d~~~~~~~~~~~~~ 421 (538)
|..+++....+...
T Consensus 235 ~~~~g~~~~~~~~~ 248 (263)
T d1npea_ 235 DLAISKEMDTFHPH 248 (263)
T ss_dssp ETTTTEEEEEECCS
T ss_pred ECCCCccceEECCC
Confidence 99988877666433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.68 E-value=0.17 Score=43.94 Aligned_cols=212 Identities=11% Similarity=0.141 Sum_probs=128.8
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG 393 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~ 393 (538)
..+.+.|+..+... .+.... ....-++|..+.++.-+ ..++.++|+++.+.++.+.- ..+|.--.|- ++
T Consensus 45 ~~VvIidl~n~~~~--~Rrpi~------AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~ 114 (327)
T d1utca2 45 AQVVIIDMNDPSNP--IRRPIS------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN 114 (327)
T ss_dssp EEEEEEETTSTTSC--EEEECC------CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS
T ss_pred ceEEEEECCCCCcc--eecccc------hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC
Confidence 46777777654422 221111 11235678888777766 46899999999998888764 3456555665 55
Q ss_pred EEEEEecCCcEEEEECCCC-ceeEEEecCCC---CceEEEEEEcCCCCEEEEEe---C----CCcEEEEeCC-cceeeec
Q 009274 394 VLYSGSRDGTIRLWSLSDH-SLLTVLEEDSS---GAVSSVLSLTAVQHTLVVSH---E----SGSIKVWRND-KFMKSMQ 461 (538)
Q Consensus 394 ~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~---~----dg~i~iwd~~-~~~~~~~ 461 (538)
.|+..+ +..|+-|++... .+.+.+..+.. ..+.. ...+++.++++..+ . .|.+.+|... +..+.++
T Consensus 115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIIn-Y~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie 192 (327)
T d1utca2 115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN-YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE 192 (327)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEE-EEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEE-EEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence 666554 567999999543 45555554432 22222 46778888877543 2 3678899854 5677889
Q ss_pred cccceEEEEEeCCC-----EEEEEe---CCCeEEEEecCCCee--------EeeeecCCcccCCCceEEEEEe-CCEEEE
Q 009274 462 THKGSVFAVFLEGK-----WLFTGG---WDKTVSVQELAGDEF--------EEDVIPTGAIPCGSVITALLYW-QGKLFV 524 (538)
Q Consensus 462 ~h~~~v~~~~~~~~-----~l~sgs---~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~l~s 524 (538)
+|.+.-..+..+|+ .++.+. ..+++++-++..... .............-++..-.++ .+.++.
T Consensus 193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv 272 (327)
T d1utca2 193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 272 (327)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence 99877766655332 333332 236889998865221 1111111112233344443343 667888
Q ss_pred EECCCeEEEEEcCC
Q 009274 525 GCADRTVKVYYYGK 538 (538)
Q Consensus 525 g~~dg~v~vw~~~~ 538 (538)
-+.-|.|+++|+.+
T Consensus 273 iTK~G~i~lyDleT 286 (327)
T d1utca2 273 ITKYGYIHLYDLET 286 (327)
T ss_dssp EETTSEEEEEETTT
T ss_pred EecCcEEEEEEccc
Confidence 99999999999864
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.65 E-value=0.019 Score=56.76 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=58.5
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeE-EEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC-E
Q 009274 361 DRTIKAWSLLDGTLSCTMSGHKSAVS-TLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-T 438 (538)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 438 (538)
.|.|.-+|+.+++.+.....+..... .++..++++++|+.||.++.+|.++|+.+.++.......... +.+..+|+ +
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P-~ty~~~G~qY 543 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP-ITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-EEEEETTEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC-EEEEECCEEE
Confidence 47899999999999998864332221 233447899999999999999999999999988654433322 46667775 4
Q ss_pred EEEE
Q 009274 439 LVVS 442 (538)
Q Consensus 439 l~~~ 442 (538)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.56 E-value=0.04 Score=54.06 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=56.6
Q ss_pred CcEEEEECCCCceeEEecCCCCCeE-EEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC-EE
Q 009274 362 RTIKAWSLLDGTLSCTMSGHKSAVS-TLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-TL 439 (538)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 439 (538)
|.|..+|+++++.+++...-..... .+...++++++|+.|+.++.+|.++|+.+.++.......... +.+..||+ ++
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P-~ty~~dGkqYi 522 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP-MTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-EEEEETTEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecc-eEEEECCEEEE
Confidence 6799999999999987752221111 233348899999999999999999999999887654333222 35555675 55
Q ss_pred EEEe
Q 009274 440 VVSH 443 (538)
Q Consensus 440 ~~~~ 443 (538)
++..
T Consensus 523 ~v~~ 526 (571)
T d2ad6a1 523 GSMY 526 (571)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.45 E-value=0.23 Score=42.79 Aligned_cols=95 Identities=6% Similarity=0.080 Sum_probs=60.4
Q ss_pred EEeec--CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe-cCC-----cEEEEECCCCceeE
Q 009274 347 ALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS-RDG-----TIRLWSLSDHSLLT 416 (538)
Q Consensus 347 ~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg-----~i~iwd~~~~~~~~ 416 (538)
.++|+ |+.++..+ +|.|.+.|+.+++.. .+..+.+.+...+|+ ++.|+... .++ .|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45677 99777664 467999999887764 556677788999999 44565443 222 37778887776543
Q ss_pred EEecC----CCCceEEEEEEcCCCCEEEEEe
Q 009274 417 VLEED----SSGAVSSVLSLTAVQHTLVVSH 443 (538)
Q Consensus 417 ~~~~~----~~~~~~~~~~~~~~~~~l~~~~ 443 (538)
..... ..........|+|+++.++...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEE
Confidence 22111 0111122357999999887653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.45 E-value=0.071 Score=52.31 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=56.6
Q ss_pred CcEEEEECCCCceeEEecCCCCCe-EEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC-EE
Q 009274 362 RTIKAWSLLDGTLSCTMSGHKSAV-STLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-TL 439 (538)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 439 (538)
|.+.-||+.+++.++..+...... -.++..++++++|+.||.++.+|.++|+.+..+.......... +.+..+|+ ++
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P-~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP-STYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-EEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC-EEEEECCEEEE
Confidence 578999999999998875432111 2344458899999999999999999999999887654322222 34555675 44
Q ss_pred EEEe
Q 009274 440 VVSH 443 (538)
Q Consensus 440 ~~~~ 443 (538)
++.+
T Consensus 536 ~v~~ 539 (573)
T d1kb0a2 536 SVAV 539 (573)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.93 E-value=0.84 Score=44.34 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=29.4
Q ss_pred eCCCEEEEEeCCCeEEEEecCCCeeEeeeecCCcc
Q 009274 472 LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI 506 (538)
Q Consensus 472 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 506 (538)
-.+.++++|+.||.++.+|.++++...........
T Consensus 495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~ 529 (582)
T d1flga_ 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc
Confidence 36778889999999999999999999887765543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.78 E-value=0.15 Score=46.65 Aligned_cols=137 Identities=9% Similarity=0.051 Sum_probs=73.2
Q ss_pred EEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCC-CcEEEEECCCCceeEE--ecCCCCCeEEEEEe-C
Q 009274 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD-RTIKAWSLLDGTLSCT--MSGHKSAVSTLAVC-N 392 (538)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~-~ 392 (538)
+.+||..+............+. .......+.+++++++.|+.+ ..+.+||..+..-... +........+.... +
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~--~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG 131 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHD--MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG 131 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCC--CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred EEEEECCCCcEeecCCCCCCcc--cceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence 6789988776543322222211 112234677889988888765 5899999987654321 22222222333333 4
Q ss_pred CEEEEEecC------CcEEEEECCCCceeEEEecC--------CC----CceEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 009274 393 GVLYSGSRD------GTIRLWSLSDHSLLTVLEED--------SS----GAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (538)
Q Consensus 393 ~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 454 (538)
.+++.|+.+ ..+.+||..+.+-...-... .. ......+...++++.++.+..++.+.+++..
T Consensus 132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 211 (387)
T d1k3ia3 132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 211 (387)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence 566666542 36899999876532211000 00 0001112344567777777777777777754
Q ss_pred c
Q 009274 455 K 455 (538)
Q Consensus 455 ~ 455 (538)
.
T Consensus 212 ~ 212 (387)
T d1k3ia3 212 S 212 (387)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.68 Score=39.78 Aligned_cols=227 Identities=11% Similarity=0.004 Sum_probs=129.3
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeee
Q 009274 265 LFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (538)
Q Consensus 265 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
|+.+. ...|+..++++.+....+. ....+.+++|.+..+.++.+-..++.|.-.++................. ....
T Consensus 4 Ll~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~-~~p~ 80 (266)
T d1ijqa1 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAPD 80 (266)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-SCCC
T ss_pred EEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC-CCcc
Confidence 34443 3358888987655444433 5567789999887777766666677787777654322221111111111 1112
Q ss_pred EEEEeecCCEEEEe-eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe--cCCcEEEEECCCCceeEEEe
Q 009274 345 IHALTTSGRYLYTG-SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS--RDGTIRLWSLSDHSLLTVLE 419 (538)
Q Consensus 345 ~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~~ 419 (538)
.+++.+.++.|+.+ ...+.|.+.++........+.........++++ .++++... ..+.|.-.++..... ..+.
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~ 159 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV 159 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-eccc
Confidence 35677656655444 456789999987666555555555677889988 45665544 344677777754433 3333
Q ss_pred cCCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCCc--ceeee--ccccceEEEEEeCCCEEEEEe-CCCeEEEEecCC
Q 009274 420 EDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK--FMKSM--QTHKGSVFAVFLEGKWLFTGG-WDKTVSVQELAG 493 (538)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~~~--~~h~~~v~~~~~~~~~l~sgs-~dg~v~iwd~~~ 493 (538)
....... ..+++.+.++.|..+ ...+.|...+... ..... ........+++.++..|+-.. .++.|+..+..+
T Consensus 160 ~~~~~~p-~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 160 TENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp CSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred cccccee-eEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCC
Confidence 2222223 347888877766665 4567888888532 12222 222234567777555555554 567888888776
Q ss_pred Cee
Q 009274 494 DEF 496 (538)
Q Consensus 494 ~~~ 496 (538)
+..
T Consensus 239 g~~ 241 (266)
T d1ijqa1 239 GSD 241 (266)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.40 E-value=0.72 Score=39.85 Aligned_cols=218 Identities=8% Similarity=0.149 Sum_probs=126.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCce
Q 009274 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (538)
Q Consensus 262 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (538)
.+.||--+ ..++.++|+++.+.++.+.-. ..|.--.|..+.. |+-. .+..|+-|+++... .+.+.+..+....
T Consensus 74 ~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~--L~lV-T~taVYHW~~~g~s--~P~k~fdR~~~L~ 146 (327)
T d1utca2 74 SKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT--VALV-TDNAVYHWSMEGES--QPVKMFDRHSSLA 146 (327)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSSE--EEEE-CSSEEEEEESSSSC--CCEEEEECCGGGT
T ss_pred CcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCCE--EEEE-cCCceEEEcccCCC--Cchhhhhhccccc
Confidence 44444444 568999999999998887744 5677778865433 2222 23679999996432 3555555554433
Q ss_pred eeeEEEEe--ecCCEEEEee-------CCCcEEEEECCCCceeEEecCCCCCeEEEEEeCC-----EEEEE---ecCCcE
Q 009274 342 YSGIHALT--TSGRYLYTGS-------GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG-----VLYSG---SRDGTI 404 (538)
Q Consensus 342 ~~~~~~~~--~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~---s~dg~i 404 (538)
...+..+. ++.++++..+ -.|.+.+|..+. +.-+.+.||......+...++ .++.+ ...+.+
T Consensus 147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL 225 (327)
T d1utca2 147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 225 (327)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence 34444443 3445333221 136788999754 455667777666555555422 22222 223678
Q ss_pred EEEECCCCc---e---e--EEEecC--CCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCCc--ceeeeccccceEEEEEe
Q 009274 405 RLWSLSDHS---L---L--TVLEED--SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL 472 (538)
Q Consensus 405 ~iwd~~~~~---~---~--~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~h~~~v~~~~~ 472 (538)
++.++.... . . ..+..+ ..+...-.+..++.-..+..-+.-|.+++||+.+ ++..-+-....|...++
T Consensus 226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~ 305 (327)
T d1utca2 226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 305 (327)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEecc
Confidence 898886521 1 1 111111 1122233367888888899999999999999654 44433344555554444
Q ss_pred --CCCEEEEEeCCCeEE
Q 009274 473 --EGKWLFTGGWDKTVS 487 (538)
Q Consensus 473 --~~~~l~sgs~dg~v~ 487 (538)
+..-+++...+|.|.
T Consensus 306 ~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 306 HEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTTTEEEEEETTSEEE
T ss_pred CCCCceEEEECCCCeEE
Confidence 334455555666654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.76 E-value=1.1 Score=38.40 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=126.6
Q ss_pred CcEEEEeCCCCc-----eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEE
Q 009274 272 KSIHVWSLKDFS-----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH 346 (538)
Q Consensus 272 g~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (538)
+.|+-.+++... ....+..+...+.+++|...++.++.+-..++.|+..+++.......+.. .. .....+
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~---~~--~~p~~i 84 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ---DL--GSPEGI 84 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT---TC--CCEEEE
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe---cc--ccccEE
Confidence 366666654322 12233444456788999887777777777788888888865432211111 11 111234
Q ss_pred EEeecCCEEE-EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecC-C--cEEEEECCCCceeEEEec
Q 009274 347 ALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD-G--TIRLWSLSDHSLLTVLEE 420 (538)
Q Consensus 347 ~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~ 420 (538)
++.+-++.|+ +-...+.|.+.++........+.........++++ .++++..... + .|.--++...... .+..
T Consensus 85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~ 163 (263)
T d1npea_ 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQ 163 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEEC
T ss_pred EEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeee
Confidence 6666566555 44556799999987655433333334667899997 5555544322 2 3444455443332 3322
Q ss_pred CCCCceEEEEEEcCCCCEEEEE-eCCCcEEEEeCCcc-ee-eeccccceEEEEEeCCCEEEEEe-CCCeEEEEecCCCee
Q 009274 421 DSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKF-MK-SMQTHKGSVFAVFLEGKWLFTGG-WDKTVSVQELAGDEF 496 (538)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~-~~-~~~~h~~~v~~~~~~~~~l~sgs-~dg~v~iwd~~~~~~ 496 (538)
..-... ..+++.+.++.|..+ ...+.|...|.... .. .+.+-.. -.+++.++..|+... ..+.|...|..+++.
T Consensus 164 ~~~~~P-~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 164 DNLGLP-NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAISKE 241 (263)
T ss_dssp TTCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEETTEEEEEETTTTEEEEEETTTTEE
T ss_pred eccccc-ceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEECCEEEEEECCCCEEEEEECCCCcc
Confidence 222222 337888777777655 45678888886532 22 2222222 246777566665554 568899999988876
Q ss_pred Eeeee
Q 009274 497 EEDVI 501 (538)
Q Consensus 497 ~~~~~ 501 (538)
.....
T Consensus 242 ~~~~~ 246 (263)
T d1npea_ 242 MDTFH 246 (263)
T ss_dssp EEEEC
T ss_pred ceEEC
Confidence 54443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.35 E-value=1.8 Score=39.37 Aligned_cols=93 Identities=5% Similarity=0.031 Sum_probs=64.5
Q ss_pred ecCCEEEEee-CCCcEEEEECCCCceeEEecC-CCCCeEEEEEe----CCEEEEEecCC------------------cEE
Q 009274 350 TSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSG-HKSAVSTLAVC----NGVLYSGSRDG------------------TIR 405 (538)
Q Consensus 350 ~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~----~~~l~s~s~dg------------------~i~ 405 (538)
+||+++++.. .+..|.+.|+++.+..+.+.- ....+..+... -.+++..+.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 3678776665 578999999999988664432 34456666654 23777776633 367
Q ss_pred EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC
Q 009274 406 LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (538)
Q Consensus 406 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 445 (538)
++|..+.+...++..... ... +.++++|+++++.+.+
T Consensus 177 ~ID~~tm~V~~QV~V~g~--ld~-~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 177 AVDADKWEVAWQVLVSGN--LDN-CDADYEGKWAFSTSYN 213 (459)
T ss_dssp EEETTTTEEEEEEEESSC--CCC-EEECSSSSEEEEEESC
T ss_pred EEecCCceEEEEeeeCCC--hhc-cccCCCCCEEEEEecc
Confidence 889999888777765432 222 6899999999988754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.18 E-value=3 Score=37.92 Aligned_cols=182 Identities=9% Similarity=0.039 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEee--cCCEEEEeeCCC------------------
Q 009274 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDR------------------ 362 (538)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg------------------ 362 (538)
++..+++.-..+.+|.+.|+.+.+..+.+...+. ...+ ...... +-.+++.++.+.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~-~~~H---G~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~ 173 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIH---GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 173 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEE---EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCC-CCCc---eeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence 4556667777899999999987665443322211 1111 112333 333777766532
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEecC--------------------------------------C
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD--------------------------------------G 402 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d--------------------------------------g 402 (538)
.+.++|..+.+....+... +....+.++ ++++++.+.+ +
T Consensus 174 ~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein 252 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 252 (459)
T ss_dssp EEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence 3678899888877766432 234455555 5677766643 2
Q ss_pred cEEEEECCCC---ceeEEEecCCCCceEEEEEEcCCCCEEEEEe-CCCcEEEEeCCcceeeecc---ccce---------
Q 009274 403 TIRLWSLSDH---SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKFMKSMQT---HKGS--------- 466 (538)
Q Consensus 403 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~---h~~~--------- 466 (538)
.+.+.|.++. ..+..+......+ . +.++|||+++++++ .+.++.++|..+....+.. ....
T Consensus 253 gV~VVD~~~~~~~~v~~yIPVpKsPH--G-V~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elgl 329 (459)
T d1fwxa2 253 GVKVVDGRKEASSLFTRYIPIANNPH--G-CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 329 (459)
T ss_dssp TEEEEECSGG--CSSEEEEEEESSCC--C-EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCS
T ss_pred CceeecccccCCcceeEEEecCCCCC--c-eEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCc
Confidence 2344454431 1222232222211 1 58899999988766 5889999997653222110 0111
Q ss_pred -EEEEEeC--CCEEEEEeCCCeEEEEecC
Q 009274 467 -VFAVFLE--GKWLFTGGWDKTVSVQELA 492 (538)
Q Consensus 467 -v~~~~~~--~~~l~sgs~dg~v~iwd~~ 492 (538)
-....|| |....|---|..|.-|++.
T Consensus 330 gPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CccccccCCCceEEEEeeccceEEEEecc
Confidence 1223454 4444455579999999984
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=3.7 Score=34.83 Aligned_cols=194 Identities=12% Similarity=0.019 Sum_probs=104.1
Q ss_pred CCCcEEEEEEc--CCEEEEE-eCCCcEEEEeCCCCc----eEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 009274 251 HRDCVTGLAVG--GGFLFSS-SFDKSIHVWSLKDFS----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (538)
Q Consensus 251 h~~~V~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (538)
....+.+++|+ .+.++-. ..++.|...+++... ....+......+.++++-+.++.+.++-...+.|.+.++.
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 34456788887 5555554 456667766664321 1222333335567788876677777777788899999987
Q ss_pred CCCCCcceeeecccCCceeeeEEEEeecCCEEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE-
Q 009274 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG- 398 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~- 398 (538)
......... .... .. .-.++.+...+++... ..+.|.-.++............-....+++++ ++.|+.+
T Consensus 108 g~~~~~~~~---~~~~-~P-~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d 182 (266)
T d1ijqa1 108 GVKRKTLFR---ENGS-KP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (266)
T ss_dssp SSSEEEEEE---CTTC-CE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEc---CCCC-Cc-ceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEec
Confidence 543211111 1111 11 2346666555454433 34567777765443333333334556888888 5555555
Q ss_pred ecCCcEEEEECCCCceeEEEecCCC-CceEEEEEEcCCCCEEEEE-eCCCcEEEEe
Q 009274 399 SRDGTIRLWSLSDHSLLTVLEEDSS-GAVSSVLSLTAVQHTLVVS-HESGSIKVWR 452 (538)
Q Consensus 399 s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd 452 (538)
...+.|...|+.............. ..... +++. +..|... ..++.|...+
T Consensus 183 ~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~-lav~--~~~ly~td~~~~~I~~~~ 235 (266)
T d1ijqa1 183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFS-LAVF--EDKVFWTDIINEAIFSAN 235 (266)
T ss_dssp TTTTEEEEEETTSCSCEEEEECTTTTSSEEE-EEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCcCEEEEEECCCCCEEEEEeCCCcccccEE-EEEE--CCEEEEEECCCCeEEEEE
Confidence 5668899889865544333332221 12222 3443 3444444 3556666555
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=87.65 E-value=7.2 Score=32.93 Aligned_cols=218 Identities=13% Similarity=0.091 Sum_probs=101.5
Q ss_pred CcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 009274 253 DCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (538)
Q Consensus 253 ~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (538)
..|..|+....+.+.-. ||.|..|-..+.-.+-.-......|..+.. +....+.- .||.+..|............
T Consensus 26 ~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~---G~~~~~al-~dg~v~~wG~~~~gq~~~~~ 100 (273)
T d1jtdb_ 26 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA---GNYHSLAL-KDGEVIAWGGNEDGQTTVPA 100 (273)
T ss_dssp SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE---CSSEEEEE-ETTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEec---CCCceeee-eeeeeeccCCCcceeecccc
Confidence 45777777755555555 899999976543222111122334555543 22232222 48999999764332211111
Q ss_pred eecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCC
Q 009274 333 KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDH 412 (538)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~ 412 (538)
... . .+..+.......+.. .|+.+..|.-...............|..++-....+ ....++.++.|.....
T Consensus 101 ~~~--~-----~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~g~~~~~G~~~~ 171 (273)
T d1jtdb_ 101 EAR--S-----GVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LAVKNGGVIAWGDNYF 171 (273)
T ss_dssp GGG--S-----SCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEEETTEEEEEECCTT
T ss_pred ccc--c-----ceeEEeeeccccccc-ccccceecccCCCCceeeeccCCceEEEEeccceee-eeecccceeEeecccC
Confidence 100 0 011222223333332 478999997543222211111223454444333333 3445788999976543
Q ss_pred ceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEeCC---cceeeeccccceEEEEEe-CCCEEEEEeCCCeEEE
Q 009274 413 SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSV 488 (538)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~h~~~v~~~~~-~~~~l~sgs~dg~v~i 488 (538)
...... ......+.. ++. ...+.+.-. ||.|+.|=.. +.-.. ......|..++- +...++. .||.|..
T Consensus 172 g~~~~~-~~~~~~v~~-Is~--G~~h~~~l~-dG~v~~WG~n~~Gql~~~-~~~~~~v~~I~~G~~~~~~l--~~g~v~~ 243 (273)
T d1jtdb_ 172 GQTTVP-AEAQSGVDD-VAG--GIFHSLALK-DGKVIAWGDNRYKQTTVP-TEALSGVSAIASGEWYSLAL--KNGKVIA 243 (273)
T ss_dssp STTSCC-GGGSSSEEE-EEE--CSSEEEEEE-TTEEEEEECCTTSTTCCC-GGGGSSCCEEEECSSCEEEE--ETTEEEE
T ss_pred Cccccc-ccccCCccc-eec--cceeeEEEe-cCcEEEcCCCCCCccCCC-ccCCCCcEEEEeCcceEEEE--ECCEEEE
Confidence 221111 111222332 232 223333223 8999999422 11111 112234566665 3334443 3899999
Q ss_pred EecC
Q 009274 489 QELA 492 (538)
Q Consensus 489 wd~~ 492 (538)
|-..
T Consensus 244 WG~~ 247 (273)
T d1jtdb_ 244 WGSS 247 (273)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9644
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.58 E-value=7.2 Score=32.84 Aligned_cols=212 Identities=11% Similarity=0.100 Sum_probs=91.1
Q ss_pred CcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeC---------CCcEEEEECCCCceeEE--ecCCCC
Q 009274 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG---------DRTIKAWSLLDGTLSCT--MSGHKS 383 (538)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~--~~~h~~ 383 (538)
..+.+||..+.+-... ....... ........+++.++.|+. -..+.+||..+.+.... +.....
T Consensus 19 ~~~~~yd~~t~~W~~~-~~~p~~R----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~ 93 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRL-ADLQVPR----SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRN 93 (288)
T ss_dssp CCEEEEETTTTEEEEC-CCCSSCC----BSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCB
T ss_pred ceEEEEECCCCeEEEC-CCCCCcc----ceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceec
Confidence 3577888876532221 1111111 112233345666666653 23577888876543321 111111
Q ss_pred CeEEEEEeCCEEEEEecCCc-----EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 009274 384 AVSTLAVCNGVLYSGSRDGT-----IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-----GSIKVWRN 453 (538)
Q Consensus 384 ~v~~l~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 453 (538)
.-.+..+.+..++.++.++. ...+|..+................. ... .++..++.|+.+ ..+..||.
T Consensus 94 ~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~~~~~GG~~~~~~~~~~~~~d~ 171 (288)
T d1zgka1 94 RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAV-LNRLLYAVGGFDGTNRLNSAECYYP 171 (288)
T ss_dssp TCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCSSCBCCCEEEEET
T ss_pred ceeccccceeeEEecceecccccceeeeeccccCccccccccccccccce-eee-eeecceEecCcccccccceEEEeec
Confidence 11222232444444443333 4456666554322111111111111 122 234455555443 34677775
Q ss_pred Ccceee-ecc---ccceEEEEEeCCCEEEEEeCC-----CeEEEEecCCCeeEeeeecCCcccCCCceEEEEEeCCE-EE
Q 009274 454 DKFMKS-MQT---HKGSVFAVFLEGKWLFTGGWD-----KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LF 523 (538)
Q Consensus 454 ~~~~~~-~~~---h~~~v~~~~~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 523 (538)
.+.... ... ..........+++.++.|+.+ .....+|..+.+........ .......+...+++ ++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~r~~~~~~~~~~~l~v 247 (288)
T d1zgka1 172 ERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK----HRRSALGITVHQGRIYV 247 (288)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS----SCCBSCEEEEETTEEEE
T ss_pred cccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCcc----CcccceEEEEECCEEEE
Confidence 432211 111 011112223366777776654 34677888777654432211 11111222333566 45
Q ss_pred EEECCC-----eEEEEEcC
Q 009274 524 VGCADR-----TVKVYYYG 537 (538)
Q Consensus 524 sg~~dg-----~v~vw~~~ 537 (538)
.|+.++ .+.+||+.
T Consensus 248 ~GG~~~~~~~~~v~~yd~~ 266 (288)
T d1zgka1 248 LGGYDGHTFLDSVECYDPD 266 (288)
T ss_dssp ECCBCSSCBCCEEEEEETT
T ss_pred EecCCCCeecceEEEEECC
Confidence 565543 36777764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.69 E-value=6.7 Score=31.61 Aligned_cols=232 Identities=16% Similarity=0.175 Sum_probs=122.9
Q ss_pred CcceeEEeecCCeEEEEEeecC------CCcEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEE--------------e
Q 009274 230 GVKDLVNGLSKGNVKFKDLQGH------RDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTF--------------K 289 (538)
Q Consensus 230 ~~~~~~~~~~~~~~~i~~l~~h------~~~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------------~ 289 (538)
++..++.+.+.|.+.+.-+.|. ..+|.....-. .+-|..+.+-|+..|+..+.+ .
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk-----~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~ 99 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPH-----YGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLE 99 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEEC-----TTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECT
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCc-----cCcceEEEEeehhcCcceeeEEEEccCCCCeeeEec
Confidence 4556777778888888777653 34444332210 012334455566555544332 1
Q ss_pred cCC-cCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCccee-----eecccCCceeeeEEEEeecCCEEEEeeC-CC
Q 009274 290 GHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK-----KWNEEKDWRYSGIHALTTSGRYLYTGSG-DR 362 (538)
Q Consensus 290 ~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg 362 (538)
... -.|.++++ ++...+++|+......+|-++.++..+... .............-.+..+..-++++.- .|
T Consensus 100 spk~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG 177 (313)
T d2hu7a1 100 AVKPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG 177 (313)
T ss_dssp TSCSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred CCceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccC
Confidence 121 34555554 678899999998888999887664332211 1111112222333334444445555555 67
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEec---CCcEEEEECCCCceeEEEecCC------CCceEEEEEEc
Q 009274 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSR---DGTIRLWSLSDHSLLTVLEEDS------SGAVSSVLSLT 433 (538)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~ 433 (538)
.+++++...|..-....-. ++.++++-. +....-+|+++++.-.. ..+. ......-+-+.
T Consensus 178 ~lri~tpkeGS~~~ay~~~----------gnKV~sdyEt~gEsywit~D~~s~~yerv-e~P~kd~~sy~p~~I~~~~Y~ 246 (313)
T d2hu7a1 178 GLRVFDSGEGSFSSASISP----------GMKVTAGLETAREARLVTVDPRDGSVEDL-ELPSKDFSSYRPTAITWLGYL 246 (313)
T ss_dssp EEEEECCSSEEEEEEEECT----------TSCEEEEEEESSCEEEEEECTTTCCEEEC-CCSSCHHHHHCCSEEEEEEEC
T ss_pred CEEEecCCCCcccceeEcc----------CceeeeccCCCCceEEEEEecccCceeee-ecCcccceeecceEEEeeeeC
Confidence 7777776555443333222 333322211 11122447776653221 1111 12222224688
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcceeeeccccceEEEEEeCCCEEEEEe
Q 009274 434 AVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGG 481 (538)
Q Consensus 434 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~h~~~v~~~~~~~~~l~sgs 481 (538)
|++++++.+-.||.-++|..++.+...++.-+.+ ..++++...+.+
T Consensus 247 Pdd~L~iiakrdG~s~lF~nGk~in~p~G~~~ga--t~i~~~iyfshs 292 (313)
T d2hu7a1 247 PDGRLAVVARREGRSAVFIDGERVEAPQGNHGRV--VLWRGKLVTSHT 292 (313)
T ss_dssp TTSCEEEEEEETTEEEEEETTEEECCCSSEEEEE--EEETTEEEEEEE
T ss_pred CCCcEEEEEecCCchheeecceEecCCCCcccce--EEECCEEEEeec
Confidence 9999999999999999999888776665533222 234555444433
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=8.3 Score=32.40 Aligned_cols=218 Identities=8% Similarity=0.056 Sum_probs=97.6
Q ss_pred CcEEEEeCCCCceEEE--EecCCcCeEEEEEecCCCCEEEEEcC---------CCcEEEEEccCCCCCcceeeecccCCc
Q 009274 272 KSIHVWSLKDFSHVHT--FKGHDHKVMAVVYVDEDQPLCISGDS---------GGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (538)
Q Consensus 272 g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (538)
..+.+||+++++-... +......-..+.. ++.+++.|+. -..+.+||..+......-. ....
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~-~p~~--- 91 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP-MSVP--- 91 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC-CSSC---
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhccccccccccccc-ccce---
Confidence 3578899887653322 2211112122222 4456666652 1356667765432221111 0000
Q ss_pred eeeeEEEEeecCCEEEEeeCCCc-----EEEEECCCCceeEEec--CCCCCeEEEEEeCCEEEEEecC-----CcEEEEE
Q 009274 341 RYSGIHALTTSGRYLYTGSGDRT-----IKAWSLLDGTLSCTMS--GHKSAVSTLAVCNGVLYSGSRD-----GTIRLWS 408 (538)
Q Consensus 341 ~~~~~~~~~~~~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~l~s~s~d-----g~i~iwd 408 (538)
.....+...+++.++.++.++. ...+|..+......-. ........+...+..++.|+.+ ..+..||
T Consensus 92 -r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d 170 (288)
T d1zgka1 92 -RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY 170 (288)
T ss_dssp -CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE
T ss_pred -ecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEee
Confidence 1111233446666666654443 4446665543322111 1111112222224455555543 4578888
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCcceeee-cc---ccceEEEEEeCCCEEEE
Q 009274 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-----GSIKVWRNDKFMKSM-QT---HKGSVFAVFLEGKWLFT 479 (538)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~-~~---h~~~v~~~~~~~~~l~s 479 (538)
..+.+....-.......... ....++..++.|+.+ .....+|..+..... .. -.....++..++++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 248 (288)
T d1zgka1 171 PERNEWRMITAMNTIRSGAG--VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVL 248 (288)
T ss_dssp TTTTEEEECCCCSSCCBSCE--EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred cccccccccccccccccccc--ccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEE
Confidence 87654332211111111111 222234555555543 345666644322211 11 11112333458888888
Q ss_pred EeCCCe-----EEEEecCCCeeEee
Q 009274 480 GGWDKT-----VSVQELAGDEFEED 499 (538)
Q Consensus 480 gs~dg~-----v~iwd~~~~~~~~~ 499 (538)
|+.++. +.+||+.+++....
T Consensus 249 GG~~~~~~~~~v~~yd~~~~~W~~~ 273 (288)
T d1zgka1 249 GGYDGHTFLDSVECYDPDTDTWSEV 273 (288)
T ss_dssp CCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ecCCCCeecceEEEEECCCCEEEEC
Confidence 876543 78999998875443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.53 E-value=12 Score=33.37 Aligned_cols=125 Identities=10% Similarity=0.131 Sum_probs=74.8
Q ss_pred cEEEEEEcCCEEEEEeCCCcEEEEeCCCCceEEEEecCCcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceee
Q 009274 254 CVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (538)
Q Consensus 254 ~V~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (538)
.|..++|+++.++... ++.+..++..+-........-..++..+.++|. .++....++.+.++++........
T Consensus 88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~--- 160 (381)
T d1xipa_ 88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQL--- 160 (381)
T ss_dssp TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE---
T ss_pred CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccc---
Confidence 4888999977766664 556888887766555555555677888888663 456677789999999876532211
Q ss_pred ecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCCC--ceeEEe------c---CCCCCeEEEEEeCC
Q 009274 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG--TLSCTM------S---GHKSAVSTLAVCNG 393 (538)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~------~---~h~~~v~~l~~~~~ 393 (538)
...+.++.+.++..+.+-.+|...++--... +....+ . .....|.+|.|-++
T Consensus 161 --------~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~ 223 (381)
T d1xipa_ 161 --------AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 223 (381)
T ss_dssp --------EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred --------cCCcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecC
Confidence 1123345555555555555555544422111 111111 1 23456889999844
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.22 E-value=11 Score=30.36 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=109.7
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCC--EEEEe------eCCCcEEEEECCCCce
Q 009274 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR--YLYTG------SGDRTIKAWSLLDGTL 374 (538)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg------~~dg~i~iwd~~~~~~ 374 (538)
++..+++.+...|.+.++-+..++.....+.. . .. ...|... ++... -.-..|++-++...-.
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtkeP---I----~~--~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE 94 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREP---I----NS--VLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE 94 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEECCSSC---C----SE--ECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEEeccc---c----cC--cCCCccCcceEEEEeehhcCcceeeEEEEccCCCCe
Confidence 35667888888899998887765433222211 0 00 1111111 22111 1122344445443223
Q ss_pred eEEecCCC-CCeEEEEEe-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCceE--------EEEEEcCCCCEEEEEeC
Q 009274 375 SCTMSGHK-SAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS--------SVLSLTAVQHTLVVSHE 444 (538)
Q Consensus 375 ~~~~~~h~-~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ 444 (538)
...+.... -.|.++++. .+.+++|+......+|-+..|+.......+.-+.+. ..-.+.++.+-++++..
T Consensus 95 E~~i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl 174 (313)
T d2hu7a1 95 EQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 174 (313)
T ss_dssp EEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred eeEecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEec
Confidence 33343333 567788887 558889999999999999888754433332222111 11223333334455544
Q ss_pred -CCcEEEEeCCcceeeeccccceEEEEEe-CCCEEEEEeC----CCeEEEEecCCCeeEeeeecCCcccCCCc--eEEEE
Q 009274 445 -SGSIKVWRNDKFMKSMQTHKGSVFAVFL-EGKWLFTGGW----DKTVSVQELAGDEFEEDVIPTGAIPCGSV--ITALL 516 (538)
Q Consensus 445 -dg~i~iwd~~~~~~~~~~h~~~v~~~~~-~~~~l~sgs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~ 516 (538)
.|.+++++.+ ++.++.... .|+.++++-. .--| -+|+++++......+...+..-.. ++.+.
T Consensus 175 ~SG~lri~tpk---------eGS~~~ay~~~gnKV~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~ 244 (313)
T d2hu7a1 175 SSGGLRVFDSG---------EGSFSSASISPGMKVTAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLG 244 (313)
T ss_dssp TTEEEEEECCS---------SEEEEEEEECTTSCEEEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEE
T ss_pred ccCCEEEecCC---------CCcccceeEccCceeeeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeee
Confidence 5666666543 344444443 4444433322 1123 347887776554444433322222 22222
Q ss_pred E-eCCEE-EEEECCCeEEEEEc
Q 009274 517 Y-WQGKL-FVGCADRTVKVYYY 536 (538)
Q Consensus 517 ~-~~~~l-~sg~~dg~v~vw~~ 536 (538)
+ |+++| +.+-.||.=++|.-
T Consensus 245 Y~Pdd~L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 245 YLPDGRLAVVARREGRSAVFID 266 (313)
T ss_dssp ECTTSCEEEEEEETTEEEEEET
T ss_pred eCCCCcEEEEEecCCchheeec
Confidence 3 46765 67888998888763
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=80.18 E-value=15 Score=30.71 Aligned_cols=218 Identities=16% Similarity=0.102 Sum_probs=103.1
Q ss_pred CcCeEEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCcceeeecccCCceeeeEEEEeecCCEEEEeeCCCcEEEEECCC
Q 009274 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371 (538)
Q Consensus 292 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 371 (538)
...|..++. +....+.-. ||.|..|-.........-... ...+..++....+.+.- .|+.+..|....
T Consensus 25 ~~~i~~va~---G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~-------~~~v~~v~~G~~~~~al-~dg~v~~wG~~~ 92 (273)
T d1jtdb_ 25 QSGVDAIAG---GYFHGLALK-GGKVLGWGANLNGQLTMPAAT-------QSGVDAIAAGNYHSLAL-KDGEVIAWGGNE 92 (273)
T ss_dssp SSSEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTSCCGGG-------GSCCCEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred CCCcEEEEc---cCCEEEEEE-CCEEEEEeCCCCCceeeeecc-------cccceEEecCCCceeee-eeeeeeccCCCc
Confidence 456777776 444444444 899999976654322211110 11123444433333332 489999998643
Q ss_pred CceeEEecCCCCCeEEEEEeCCEEEEEecCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEeCCCcEEEE
Q 009274 372 GTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (538)
Q Consensus 372 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 451 (538)
.-...........+..++......+.. .|+.+..|.-.......... .....+.. .......++ ...++.++.|
T Consensus 93 ~gq~~~~~~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~~-~~~~~v~~---~~~~~~~~~-~~~~g~~~~~ 166 (273)
T d1jtdb_ 93 DGQTTVPAEARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPA-EAQSGVTA---LDGGVYTAL-AVKNGGVIAW 166 (273)
T ss_dssp TSTTCCCGGGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCCG-GGGSSEEE---EEECSSEEE-EEETTEEEEE
T ss_pred ceeeccccccccceeEEeeeccccccc-ccccceecccCCCCceeeec-cCCceEEE---Eeccceeee-eecccceeEe
Confidence 221111111123455555554444333 58999999754332211111 11112221 122222333 3357888888
Q ss_pred eCCc--ceeeeccccceEEEEEeCCCEEEEEeCCCeEEEEecCCC-eeEeeeecCCcccCCCceEEEEEeCCEEEEEECC
Q 009274 452 RNDK--FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGD-EFEEDVIPTGAIPCGSVITALLYWQGKLFVGCAD 528 (538)
Q Consensus 452 d~~~--~~~~~~~h~~~v~~~~~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 528 (538)
-... ...........|..++......+.-. ||.|+.|=.... ++.. +.. ...-+..+...+...++- .|
T Consensus 167 G~~~~g~~~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~---~~~---~~~~v~~I~~G~~~~~~l-~~ 238 (273)
T d1jtdb_ 167 GDNYFGQTTVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTV---PTE---ALSGVSAIASGEWYSLAL-KN 238 (273)
T ss_dssp ECCTTSTTSCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCC---CGG---GGSSCCEEEECSSCEEEE-ET
T ss_pred ecccCCcccccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCC---Ccc---CCCCcEEEEeCcceEEEE-EC
Confidence 6332 11122224456788877444444334 899999965432 1111 000 111223333434433322 48
Q ss_pred CeEEEEE
Q 009274 529 RTVKVYY 535 (538)
Q Consensus 529 g~v~vw~ 535 (538)
|.|..|-
T Consensus 239 g~v~~WG 245 (273)
T d1jtdb_ 239 GKVIAWG 245 (273)
T ss_dssp TEEEEES
T ss_pred CEEEEEC
Confidence 9999984
|