Citrus Sinensis ID: 009276

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MVSKCFSINLHHHLQLSLPAAISPKPNRPSPWQLANPSIFSATKITTFHKFCGSLTRAMPLSSTEFNDDLEPHLTLRNEDLKPSTINERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQNSPPFEDLLPSAT
cccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
cccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccHHHHHHccccccHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccEEEEHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHcccEcHHHHccccccccEEEcccccHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHccccccc
MVSKCFSInlhhhlqlslpaaispkpnrpspwqlanpsifsatKITTFHKFCGsltramplsstefnddlephltlrnedlkpstineRTFSCLVDLGMAWWQGIATVVAANVILLVPLvltghpgtkygipfpvlarssfgikgahIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIkqssilsqslpwlgtsplEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAggfghmlskssklsssefWSLFFPSLTANISFWATVAlnipdftryaksqndqilgqaglpifmGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANvvapanalvnlrpsiftFRKGAILTALLGIafqpwrllksseSFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYslnpngayyysgGYNLVAIMALSIGilpvipgflqkVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLrgkqnsppfedllpsat
MVSKCFSINLHHHLQLSLPAAISPKPNRPSPWQLANPSIFSATKITTFHKFCGSLTRAMPLSSTEFNDDLEPHLTlrnedlkpstiNERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGkqnsppfedllpsat
MVSKCFSINLHHHLQLSLPAAISPKPNRPSPWQLANPSIFSATKITTFHKFCGSLTRAMPLSSTEFNDDLEPHLTLRNEDLKPSTINERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMlskssklsssefwslffpslTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQiggittrilgiigiSLATITTNIaanvvapanalvnlRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQNSPPFEDLLPSAT
****CFSINLHHHLQLSL*************WQLANPSIFSATKITTFHKFCGSLTRAMP************************TINERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLR****************
***KCFS********************************************************************LRNEDLKPSTINERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQNSP**********
MVSKCFSINLHHHLQLSLPAAISPKPNRPSPWQLANPSIFSATKITTFHKFCGSLTRAMPLSSTEFNDDLEPHLTLRNEDLKPSTINERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQNSPPFEDLLPSAT
*VSKCFSINLHHHLQLSLPAA*********PWQLANPSIFSATKITTFHKFCGSLTRAM*************HLTLRNEDLKPSTINERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGK**************
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MVSKCFSINLHHHLQLSLPAAISPKPNRPSPWQLANPSIFSATKITTFHKFCGSLTRAMPLSSTEFNDDLEPHLTLRNEDLKPSTINERTFSCLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLLRGKQNSPPFEDLLPSAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
P94575490 Probable allantoin permea yes no 0.819 0.9 0.340 4e-67
O14035590 Uncharacterized permease yes no 0.758 0.691 0.319 1e-52
Q10279581 Uracil permease OS=Schizo no no 0.728 0.674 0.309 3e-49
Q04895635 Allantoin permease OS=Sac yes no 0.836 0.708 0.286 2e-40
P38196639 Uridine permease OS=Sacch no no 0.828 0.697 0.265 1e-37
Q9P6J5559 Uncharacterized permease no no 0.836 0.805 0.259 7e-37
P05316633 Uracil permease OS=Saccha no no 0.756 0.642 0.268 3e-36
P75712484 Putative allantoin permea N/A no 0.711 0.791 0.254 5e-30
Q08485598 Nicotinamide riboside tra no no 0.736 0.662 0.210 8e-16
Q08579599 Thiamine transporter THI7 no no 0.734 0.659 0.212 2e-13
>sp|P94575|ALLP_BACSU Probable allantoin permease OS=Bacillus subtilis (strain 168) GN=pucI PE=2 SV=1 Back     alignment and function desciption
 Score =  256 bits (654), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 253/479 (52%), Gaps = 38/479 (7%)

Query: 65  EFNDDLEPHLTLRNEDLKPSTINERTFSC----------------------LVDLGMAWW 102
           +  +  +    L NEDL P    +RT+                        L+ +G++ W
Sbjct: 2   KLKESQQQSNRLSNEDLVPLGQEKRTWKAMNFASIWMGCIHNIPTYATVGGLIAIGLSPW 61

Query: 103 QGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYG 162
           Q +A ++ A++IL   L L GH GTKYG+PFPV+ R+S+GI GA+IP LLRA     W G
Sbjct: 62  QVLAIIITASLILFGALALNGHAGTKYGLPFPVIIRASYGIYGANIPALLRAFTAIMWLG 121

Query: 163 IETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIR 222
           I+T+ G  A+ +LL         +      LG        F+ FW   L ++  G+E I+
Sbjct: 122 IQTFAGSTALNILLLNMWPGWGEIGGEWNILGIHLSGLLSFVFFWAIHLLVLHHGMESIK 181

Query: 223 ELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLS--SSEFWSLFFPSLTANISFW 280
             E ++ P++ ++    ++WA   AGG G + S+  K    S  FW  F   +T  I  W
Sbjct: 182 RFEVWAGPLVYLVFGGMVWWAVDIAGGLGPIYSQPGKFHTFSETFWP-FAAGVTGIIGIW 240

Query: 281 ATVALNIPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQL 339
           AT+ LNIPDFTR+A++Q +QI GQ  GLP     F F  + +T  +QV FG  I   + +
Sbjct: 241 ATLILNIPDFTRFAETQKEQIKGQFYGLPGTFALFAFASITVTSGSQVAFGEPIWDVVDI 300

Query: 340 LDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIA 399
           L +       +L +I + +ATI+ N+AAN+V+PA  + N  P    F++G+ +TALL + 
Sbjct: 301 LARFDNPYVIVLSVITLCIATISVNVAANIVSPAYDIANALPKYINFKRGSFITALLALF 360

Query: 400 FQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYY 459
             PW+L++S+ S VY +L     +LGP+ G+++ADY++I+  +LS+  LYS    G Y Y
Sbjct: 361 TVPWKLMESATS-VYAFLGLIGGMLGPVAGVMMADYFIIRKRELSVDDLYS--ETGRYVY 417

Query: 460 SGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVL 518
             GYN  A  A  +G L      +  +G+ V +  S   +Y+ +WF    ++   Y VL
Sbjct: 418 WKGYNYRAFAATMLGAL------ISLIGMYVPVLKS---LYDISWFVGVLISFLFYIVL 467
Transport of allantoin.
Bacillus subtilis (strain 168) (taxid: 224308)
>sp|O14035|YEME_SCHPO Uncharacterized permease C29B12.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29B12.14c PE=3 SV=2 Back     alignment and function description
>sp|Q10279|FUR4_SCHPO Uracil permease OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fur4 PE=1 SV=2 Back     alignment and function description
>sp|Q04895|DAL4_YEAST Allantoin permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL4 PE=1 SV=1 Back     alignment and function description
>sp|P38196|FUI1_YEAST Uridine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUI1 PE=1 SV=1 Back     alignment and function description
>sp|Q9P6J5|YHD5_SCHPO Uncharacterized permease C1683.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.05 PE=3 SV=1 Back     alignment and function description
>sp|P05316|FUR4_YEAST Uracil permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUR4 PE=1 SV=2 Back     alignment and function description
>sp|P75712|ALLP_ECOLI Putative allantoin permease OS=Escherichia coli (strain K12) GN=ybbW PE=1 SV=2 Back     alignment and function description
>sp|Q08485|NRT1_YEAST Nicotinamide riboside transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRT1 PE=1 SV=1 Back     alignment and function description
>sp|Q08579|THI72_YEAST Thiamine transporter THI72 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI72 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
147799196563 hypothetical protein VITISV_030411 [Viti 0.994 0.950 0.709 0.0
225441112509 PREDICTED: probable allantoin permease-l 0.884 0.935 0.764 0.0
255556792566 Uracil permease, putative [Ricinus commu 0.977 0.929 0.707 0.0
224069689507 predicted protein [Populus trichocarpa] 0.875 0.928 0.773 0.0
357440319586 Uracil transporter-like protein [Medicag 0.990 0.909 0.645 0.0
356548359572 PREDICTED: probable allantoin permease-l 0.977 0.919 0.650 0.0
42567620599 nucleobase:cation symporter-1, NCS1 fami 0.868 0.779 0.684 0.0
357510915560 Uracil transporter-like protein [Medicag 0.886 0.851 0.714 0.0
297740002501 unnamed protein product [Vitis vinifera] 0.895 0.962 0.656 0.0
16648836502 At5g03555/C415EPL23M [Arabidopsis thalia 0.860 0.922 0.688 0.0
>gi|147799196|emb|CAN65774.1| hypothetical protein VITISV_030411 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/564 (70%), Positives = 452/564 (80%), Gaps = 29/564 (5%)

Query: 1   MVSKCFSINLHHHLQLSLPAAISPKPNR---PSPWQLANPSIFSATKI-TTFHKFCGSLT 56
           MVSK  S++L  +   S   AISP   R     P+  + P+  S  +   +F     S  
Sbjct: 1   MVSKYLSLHLPPNPHSSSTTAISPTTTRFLTTRPFPTSIPTKLSVXRRWLSFSTMASSQA 60

Query: 57  RAMPLSSTEFNDDLEPHLTLRNEDLKPSTINERTFS----------------------CL 94
              P  + +FND  EPH TL N+DLKP+  ++RTFS                       L
Sbjct: 61  TPSPTPTXKFND-FEPHPTLTNDDLKPTAPHQRTFSGWEMASLWVGLVVGVPSYYLAGSL 119

Query: 95  VDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRA 154
           V+LGMAWWQGIATVVAAN+ILLVPLVLTGHPGT+YGI FPVLARS+FGI+GAH+PTLLRA
Sbjct: 120 VELGMAWWQGIATVVAANIILLVPLVLTGHPGTRYGISFPVLARSAFGIRGAHLPTLLRA 179

Query: 155 LVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIV 214
           LVGCGWYGIETWIGGEA+FLLLPK IKQSS LSQ LPWLGTSPLEF+CFI FWLAQLAIV
Sbjct: 180 LVGCGWYGIETWIGGEAIFLLLPKTIKQSS-LSQFLPWLGTSPLEFSCFIVFWLAQLAIV 238

Query: 215 WKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLT 274
           W+G++GIRELEKYSAPILIILTS  L W+YVNAGGF  MLS SS+LSSS+FWSLFFPSLT
Sbjct: 239 WRGMDGIRELEKYSAPILIILTSCLLLWSYVNAGGFTPMLSLSSRLSSSQFWSLFFPSLT 298

Query: 275 ANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVIS 334
           ANISFWATVALNIPDFTRYAK+Q DQI+GQ GLPIFMGAFTFVGLA+T ST VIFGR+IS
Sbjct: 299 ANISFWATVALNIPDFTRYAKTQTDQIIGQVGLPIFMGAFTFVGLAVTSSTTVIFGRLIS 358

Query: 335 SPIQLLDQIGGITTRILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTA 394
           +PIQLL QIGG TT IL IIGISLATITTNIAANVVAPANALVNL PS FTFR+GA+LTA
Sbjct: 359 NPIQLLGQIGGFTTMILAIIGISLATITTNIAANVVAPANALVNLSPSKFTFRRGALLTA 418

Query: 395 LLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPN 454
           LLGIAFQPWRLL SSESFVYTWLVGYSALLGPIG IILADYYLI    LSI  LYSL+P+
Sbjct: 419 LLGIAFQPWRLLHSSESFVYTWLVGYSALLGPIGSIILADYYLIHRMNLSINDLYSLSPH 478

Query: 455 GAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFV 514
           GAYYYSGGYNL A+ AL IGILPV+PG LQK+G++ ++P++FV IYNNAWFFSFF AG +
Sbjct: 479 GAYYYSGGYNLAAMTALVIGILPVVPGLLQKLGILTSVPDTFVAIYNNAWFFSFFSAGIL 538

Query: 515 YWVLSLLRGK-QNSPPFEDLLPSA 537
           YW+LS L+GK +NS P + LLP+A
Sbjct: 539 YWILSCLKGKDRNSHPLDPLLPAA 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441112|ref|XP_002264940.1| PREDICTED: probable allantoin permease-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556792|ref|XP_002519429.1| Uracil permease, putative [Ricinus communis] gi|223541292|gb|EEF42843.1| Uracil permease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224069689|ref|XP_002326396.1| predicted protein [Populus trichocarpa] gi|222833589|gb|EEE72066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357440319|ref|XP_003590437.1| Uracil transporter-like protein [Medicago truncatula] gi|355479485|gb|AES60688.1| Uracil transporter-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548359|ref|XP_003542570.1| PREDICTED: probable allantoin permease-like [Glycine max] Back     alignment and taxonomy information
>gi|42567620|ref|NP_568122.2| nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana] gi|7378642|emb|CAB83318.1| uracil transporter-like protein [Arabidopsis thaliana] gi|332003242|gb|AED90625.1| nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357510915|ref|XP_003625746.1| Uracil transporter-like protein [Medicago truncatula] gi|355500761|gb|AES81964.1| Uracil transporter-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297740002|emb|CBI30184.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|16648836|gb|AAL25608.1| At5g03555/C415EPL23M [Arabidopsis thaliana] gi|21618291|gb|AAM67341.1| uracil transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:505006580599 NCS1 "nucleobase cation sympor 0.804 0.722 0.668 5.2e-165
TIGR_CMR|CPS_4056515 CPS_4056 "transporter, NCS1 nu 0.758 0.792 0.356 4.7e-64
POMBASE|SPAC29B12.14c590 SPAC29B12.14c "purine transpor 0.750 0.684 0.304 5.8e-50
ASPGD|ASPL0000027880527 furE [Emericella nidulans (tax 0.786 0.802 0.290 7.7e-48
POMBASE|SPAC1399.03581 fur4 "uracil permease" [Schizo 0.769 0.712 0.275 3.8e-46
CGD|CAL0004663570 DAL4 [Candida albicans (taxid: 0.780 0.736 0.271 6.6e-42
CGD|CAL0004851570 FUR4 [Candida albicans (taxid: 0.780 0.736 0.271 6.6e-42
SGD|S000001467635 DAL4 "Allantoin permease" [Sac 0.780 0.661 0.253 1.9e-40
SGD|S000000138639 FUI1 "High affinity uridine pe 0.782 0.658 0.249 1.4e-38
UNIPROTKB|P75712484 ybbW "YbbW NCS1 Transporter" [ 0.704 0.783 0.239 2.1e-36
TAIR|locus:505006580 NCS1 "nucleobase cation symporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1524 (541.5 bits), Expect = 5.2e-165, Sum P(3) = 5.2e-165
 Identities = 291/435 (66%), Positives = 336/435 (77%)

Query:    94 LVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLR 153
             LVDLGMAWWQGIATVV AN+ILLVPLVLT  PGT YGI FPVLARSSFGI+GAHIPTLLR
Sbjct:   157 LVDLGMAWWQGIATVVTANLILLVPLVLTAQPGTLYGISFPVLARSSFGIRGAHIPTLLR 216

Query:   154 ALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAI 213
             ALVGCGWYGIETWIGGEA+FLLLP  IK+S+ LS +LPWLGTSPLEF+CFI FWLAQL I
Sbjct:   217 ALVGCGWYGIETWIGGEAIFLLLPGHIKKSA-LSHTLPWLGTSPLEFSCFIVFWLAQLCI 275

Query:   214 VWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMXXXXXXXXXXXXXXXXXXXX 273
             VW+G++GIR+LEKYSAPILI LTS  L W+Y+ AGGFGHM                    
Sbjct:   276 VWRGMDGIRKLEKYSAPILISLTSCLLAWSYLKAGGFGHMLSLSSKLTSAQFWTLFFPSL 335

Query:   274 TANISFWATVALNIPDFTRYAKSQNDQILGQAGLPIFMGAFTFVGLAITCSTQVIFGRVI 333
             TANISFWAT+ALNIPDF+R+AKSQ DQI+GQ GLP+FMG FTFVG+A+T ST +IFGRVI
Sbjct:   336 TANISFWATLALNIPDFSRFAKSQTDQIIGQVGLPVFMGLFTFVGVAVTSSTSIIFGRVI 395

Query:   334 SSPIQLLDQXXXXXXXXXXXXXXSLATITTNIXXXXXXXXXXXXXXRPSIFTFRKGAILT 393
             S+PI+LL Q              SLAT+TTNI               P  FTF +GA LT
Sbjct:   396 SNPIELLGQIGGLATTLLAIVGISLATLTTNIAANVVAPANALVNLNPKFFTFGRGAFLT 455

Query:   394 ALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNP 453
             A+LGI FQPWRLLKSSESFVYTWL+GYSALLGPIGGIIL DYYLI+  KL+I  LYSL+P
Sbjct:   456 AVLGIVFQPWRLLKSSESFVYTWLIGYSALLGPIGGIILVDYYLIKKMKLNIGDLYSLSP 515

Query:   454 NGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGF 513
             +G YY+S GYN+ A++AL  GI+PV+PGFL K+  +  I N FVV+Y+NA FFSF +AGF
Sbjct:   516 SGEYYFSKGYNVAAVVALVAGIIPVVPGFLHKISALSKISNGFVVVYDNALFFSFIIAGF 575

Query:   514 VYWVL-SLLRGKQNS 527
             VYW++ S L  KQ+S
Sbjct:   576 VYWIIMSRLGRKQSS 590
GO:0009507 "chloroplast" evidence=ISM
GO:0015205 "nucleobase transmembrane transporter activity" evidence=IEA;ISS;IDA
GO:0015931 "nucleobase-containing compound transport" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0009526 "plastid envelope" evidence=IDA
GO:0043100 "pyrimidine nucleobase salvage" evidence=IMP
GO:0009411 "response to UV" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
TIGR_CMR|CPS_4056 CPS_4056 "transporter, NCS1 nucleoside family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
POMBASE|SPAC29B12.14c SPAC29B12.14c "purine transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000027880 furE [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC1399.03 fur4 "uracil permease" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0004663 DAL4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
CGD|CAL0004851 FUR4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000001467 DAL4 "Allantoin permease" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000000138 FUI1 "High affinity uridine permease, localizes to the plasma membrane" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P75712 ybbW "YbbW NCS1 Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P94575ALLP_BACSUNo assigned EC number0.34020.81970.9yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
cd11485459 cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nu 0.0
COG1953497 COG1953, FUI1, Cytosine/uracil/thiamine/allantoin 1e-125
cd11482478 cd11482, SLC-NCS1sbd_NRT1-like, nucleobase-cation- 1e-100
cd11555459 cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobas 3e-97
pfam02133438 pfam02133, Transp_cyt_pur, Permease for cytosine/p 8e-82
TIGR00800442 TIGR00800, ncs1, NCS1 nucleoside transporter famil 3e-77
cd10323453 cd10323, SLC-NCS1sbd, nucleobase-cation-symport-1 2e-69
cd11483434 cd11483, SLC-NCS1sbd_Mhp1-like, nucleobase-cation- 4e-67
PRK11375484 PRK11375, PRK11375, allantoin permease; Provisiona 1e-47
COG1457442 COG1457, CodB, Purine-cytosine permease and relate 2e-18
cd11484403 cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation- 2e-11
cd06857413 cd06857, SLC5-6-like_sbd, Solute carrier families 8e-10
PRK11017404 PRK11017, codB, cytosine permease; Provisional 5e-07
TIGR02358386 TIGR02358, thia_cytX, putative hydroxymethylpyrimi 5e-05
>gnl|CDD|212054 cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain Back     alignment and domain information 
 Score =  543 bits (1402), Expect = 0.0
 Identities = 227/470 (48%), Positives = 310/470 (65%), Gaps = 35/470 (7%)

Query: 76  LRNEDLKPSTINERTF----------------------SCLVDLGMAWWQGIATVVAANV 113
           L NEDL P    +RT+                      S L+ LGM+WWQ + TVV  N+
Sbjct: 1   LYNEDLAPVPPEQRTWTTWNYAALWIGMVHNIPTYTLASGLIALGMSWWQALLTVVLGNL 60

Query: 114 ILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVF 173
           I+L+P+VL GH GTKYGIPFPVLAR+SFG++GA+IP LLRA+V CGW+GI+TWIGG+A+F
Sbjct: 61  IVLIPMVLNGHAGTKYGIPFPVLARASFGVRGANIPALLRAIVACGWFGIQTWIGGQAIF 120

Query: 174 LLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILI 233
            +L              PWLG S  E   F+ FW   + I++KGIE IR+LEK++AP+LI
Sbjct: 121 AILGVLWPGWLT-GGGFPWLGISLGELISFLIFWALNVYIIYKGIESIRKLEKWAAPLLI 179

Query: 234 ILTSSFLFWAYVNAGGFGHMLSKSSKL-SSSEFWSLFFPSLTANISFWATVALNIPDFTR 292
           IL+ + L WA   AGGFG +LS+ SK  +  +FW +FFP+LTA I FWAT+ALNIPDFTR
Sbjct: 180 ILSLALLIWAISKAGGFGPILSQPSKFGTGGDFWKVFFPALTAMIGFWATLALNIPDFTR 239

Query: 293 YAKSQNDQILGQA-GLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQIGGITTRIL 351
           +AKSQ  Q+LGQA GLPI M  F FVG+A+T +T VIFG  I  P+ LL +       I+
Sbjct: 240 FAKSQRAQVLGQAIGLPITMALFAFVGVAVTSATVVIFGEAIWDPVDLLSRFDNPVAVII 299

Query: 352 GIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSES 411
            ++ I LAT++TN+AAN+V+PA    NL P   +FR+G ++TA+LG+   PW+LL+S+  
Sbjct: 300 ALLAIILATLSTNVAANLVSPAYDFANLFPKRISFRRGGLITAVLGLLIMPWKLLESASG 359

Query: 412 FVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMAL 471
           +++TWL GY ALLGPI GI++ADY+L++  +L +  LY     G Y+YS G+N  A++A 
Sbjct: 360 YIFTWLGGYGALLGPIAGIMIADYWLVRRTRLDLDDLYRR--GGRYWYSNGWNWRALIAF 417

Query: 472 SIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVLSLL 521
           ++G+LP +PGFL        IP     +Y+ AWF  F +AG +Y +L   
Sbjct: 418 AVGVLPNLPGFL--------IPAFLAWLYDYAWFVGFLVAGLLYLLLMKR 459

NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. This subfamily includes the putative allantoin transporter Escherichia coli YbbW (also known as GlxB2). NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s). Length = 459
>gnl|CDD|224864 COG1953, FUI1, Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212051 cd11482, SLC-NCS1sbd_NRT1-like, nucleobase-cation-symport-1 (NCS1) transporter NRT1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212093 cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|216892 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, thiamine, allantoin Back     alignment and domain information
>gnl|CDD|233132 TIGR00800, ncs1, NCS1 nucleoside transporter family Back     alignment and domain information
>gnl|CDD|212033 cd10323, SLC-NCS1sbd, nucleobase-cation-symport-1 (NCS1) transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212052 cd11483, SLC-NCS1sbd_Mhp1-like, nucleobase-cation-symport-1 (NCS1) transporter Mhp1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional Back     alignment and domain information
>gnl|CDD|224374 COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|212053 cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like; solute binding domain Back     alignment and domain information
>gnl|CDD|236821 PRK11017, codB, cytosine permease; Provisional Back     alignment and domain information
>gnl|CDD|233834 TIGR02358, thia_cytX, putative hydroxymethylpyrimidine transporter CytX Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
KOG2466572 consensus Uridine permease/thiamine transporter/al 100.0
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 100.0
PRK11375484 allantoin permease; Provisional 100.0
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 100.0
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 100.0
PRK11017404 codB cytosine permease; Provisional 100.0
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 100.0
COG1457442 CodB Purine-cytosine permease and related proteins 100.0
TIGR00814397 stp serine transporter. The HAAAP family includes 97.96
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 97.94
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.9
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 97.84
PRK10484523 putative transporter; Provisional 97.8
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.78
PRK10644445 arginine:agmatin antiporter; Provisional 97.75
TIGR00908442 2A0305 ethanolamine permease. The three genes used 97.75
PRK11387471 S-methylmethionine transporter; Provisional 97.75
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.71
PRK15049499 L-asparagine permease; Provisional 97.71
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.7
TIGR00837381 araaP aromatic amino acid transport protein. aroma 97.69
PRK00701439 manganese transport protein MntH; Reviewed 97.68
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.65
TIGR00813407 sss transporter, SSS family. have different number 97.65
TIGR00912359 2A0309 spore germination protein (amino acid perme 97.62
TIGR00930 953 2a30 K-Cl cotransporter. 97.62
PRK15419502 proline:sodium symporter PutP; Provisional 97.61
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 97.59
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.58
PRK10238456 aromatic amino acid transporter; Provisional 97.54
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.49
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.38
PRK12488549 acetate permease; Provisional 97.37
TIGR00913478 2A0310 amino acid permease (yeast). 97.33
TIGR00909429 2A0306 amino acid transporter. 97.27
PRK10746461 putative transport protein YifK; Provisional 97.25
PRK10655438 potE putrescine transporter; Provisional 97.24
PRK15433439 branched-chain amino acid transport system 2 carri 97.24
COG3949349 Uncharacterized membrane protein [Function unknown 97.19
KOG1303437 consensus Amino acid transporters [Amino acid tran 97.17
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.15
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 97.15
PF03845320 Spore_permease: Spore germination protein; InterPr 97.12
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 97.05
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.04
PRK10483414 tryptophan permease; Provisional 96.88
PRK10197446 gamma-aminobutyrate transporter; Provisional 96.84
PRK09664415 tryptophan permease TnaB; Provisional 96.79
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 96.79
PRK09395551 actP acetate permease; Provisional 96.64
PRK10249458 phenylalanine transporter; Provisional 96.64
PTZ00206467 amino acid transporter; Provisional 96.47
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.44
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 96.42
COG0814415 SdaC Amino acid permeases [Amino acid transport an 96.27
PRK10580457 proY putative proline-specific permease; Provision 96.22
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 96.19
PRK11357445 frlA putative fructoselysine transporter; Provisio 96.14
PRK15132403 tyrosine transporter TyrP; Provisional 96.13
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 96.13
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.1
PRK15238496 inner membrane transporter YjeM; Provisional 95.98
PRK13629443 threonine/serine transporter TdcC; Provisional 95.78
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 95.51
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 95.45
COG0591493 PutP Na+/proline symporter [Amino acid transport a 95.29
TIGR00906557 2A0303 cationic amino acid transport permease. 95.28
TIGR00911501 2A0308 L-type amino acid transporter. 94.98
TIGR00907482 2A0304 amino acid permease (GABA permease). 93.67
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 93.53
COG0833541 LysP Amino acid transporters [Amino acid transport 93.22
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 93.22
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 92.03
KOG2349585 consensus Na+:iodide/myo-inositol/multivitamin sym 90.19
COG0531466 PotE Amino acid transporters [Amino acid transport 88.62
PRK11021410 putative transporter; Provisional 86.33
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 85.48
PRK10836489 lysine transporter; Provisional 84.68
TIGR00835425 agcS amino acid carrier protein. Members of the AG 80.48
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-96  Score=749.25  Aligned_cols=455  Identities=38%  Similarity=0.676  Sum_probs=433.3

Q ss_pred             CCCCCCccccCCCCCCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009276           69 DLEPHLTLRNEDLKPSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPG  126 (538)
Q Consensus        69 ~~~~~~~~~n~dl~Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G  126 (538)
                      +...++.++|+||+|+|+++|||+                      +.+.+|||+||+++++++|+++..+++.++|++|
T Consensus        34 ~s~~~~fL~N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns~~G  113 (572)
T KOG2466|consen   34 ESLSESFLTNPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNSRPG  113 (572)
T ss_pred             chhccccccCCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            344667899999999999999998                      5789999999999999999999999999999999


Q ss_pred             cccCCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHH
Q 009276          127 TKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAF  206 (538)
Q Consensus       127 ~k~Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~  206 (538)
                      ..||+++++++|++||++||.+|.++|.+++|+|||+|+|+||++++.++..+++++.+++|+++..++++.+++||++|
T Consensus       114 ~~yhIsFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIF  193 (572)
T KOG2466|consen  114 SDYHISFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIF  193 (572)
T ss_pred             cccccceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHHHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCchhhHHHHHHHHHHHHHHHHhHhcc
Q 009276          207 WLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALN  286 (538)
Q Consensus       207 ~~l~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~  286 (538)
                      |+++.+..+++++.||+++.+++++...+++++++|++.++||.|++++.+.+.++++..|.++.+++.+++.+++.++|
T Consensus       194 wv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N  273 (572)
T KOG2466|consen  194 WVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVN  273 (572)
T ss_pred             HHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhcc
Confidence            99999999999999999999999999999999999999999999998876656666676667888999999999999999


Q ss_pred             ccccccccccCCcchhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHHh-------hhhHHHHHHHHHHHH
Q 009276          287 IPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQI-------GGITTRILGIIGISL  358 (538)
Q Consensus       287 ~sDysRy~k~~~~~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~~-------g~~~~~~~~~l~i~l  358 (538)
                      +||||||+|++.+.+++| +.+|+...++.++|++.++++..+||+.+|||.|++.++       |.|++++++.+++.+
T Consensus       274 ~pDFsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~l  353 (572)
T KOG2466|consen  274 APDFSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFAL  353 (572)
T ss_pred             CchhHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence            999999999999999999 889999999999999999999999999999999999987       557999999999999


Q ss_pred             HHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHHhhhhhhh
Q 009276          359 ATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLI  438 (538)
Q Consensus       359 a~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~l~Dy~li  438 (538)
                      +|+++||++|.+++|+|+++++||++|+|||++++++++++++||+++++.++|+ ++|+.++++++|++||+++|||++
T Consensus       354 aql~~NISan~vaagnDl~~L~PkyinIrRG~~~~a~ia~a~~PWnll~SSs~F~-t~LssysvfLspiagViiaDyF~i  432 (572)
T KOG2466|consen  354 AQLGTNISANSVAAGNDLSALLPKYINIRRGALICAIIAWAICPWNLLSSSSKFL-TALSSYSVFLSPIAGVIIADYFLI  432 (572)
T ss_pred             HHHhcchhccccccchhhHhhCcceEEecccHHHHHHHHHHhCchHHhccccHHH-HHHHHHHHHHhhccceEeehhhee
Confidence            9999999999999999999999999999999999999999999999999999999 899999999999999999999999


Q ss_pred             hcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHHHHHHHHHHHHH
Q 009276          439 QGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGFVYWVL  518 (538)
Q Consensus       439 Rr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g~~vs~vvY~~l  518 (538)
                      ||++|+++++|+.++++.|+|++|+||||++||+||+++++||+..++|....++++..+.+++++++|+++++++|+.|
T Consensus       433 Rk~~~~i~~~y~~~~g~yY~~~~G~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~yy~~yf~sf~isf~vYwiL  512 (572)
T KOG2466|consen  433 RKGYYKITHLYSLSKGSYYYFKKGINWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKLYYLDYFFSFLISFLVYWIL  512 (572)
T ss_pred             ecceeeeeeeeecCCCceeeeecCccHHHHHHHHhccccCCcchhhhcCcccccccceEEEEechHHHHHHHHHHHHHHH
Confidence            99999999999988777788889999999999999999999999999987778899999999999999999999999999


Q ss_pred             hhccCC
Q 009276          519 SLLRGK  524 (538)
Q Consensus       519 ~~~~~~  524 (538)
                      |+..+.
T Consensus       513 c~~fP~  518 (572)
T KOG2466|consen  513 CLFFPV  518 (572)
T ss_pred             HhhcCc
Confidence            987554

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
2jln_A501 Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Fa 2e-18
2x79_A501 Inward Facing Conformation Of Mhp1 Length = 501 1e-16
>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family Transporter Length = 501 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 164/386 (42%), Gaps = 59/386 (15%)
Query: 102 WQGIATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWY 161
           WQ I  + A   I ++ L  T     ++GI F V AR  FGI+G+ IP  L+AL+   W+
Sbjct: 59  WQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWF 118
Query: 162 GIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGI 221
           G +TW+G  A+             +++ L      PL    F A    Q+   + GI  I
Sbjct: 119 GFQTWLGALAL-----------DEITRLLTGFTNLPLWIVIFGAI---QVVTTFYGITFI 164
Query: 222 RELEKYSAPILIILTSSFLFWAYVNAGGFGHMXXXXXXXXXXXXXXXXXXXXTANISFWA 281
           R +  +++P+L+ +    ++  Y+   G                           +  W 
Sbjct: 165 RWMNVFASPVLLAMG---VYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWI 221
Query: 282 TVALNI----------PDFTRYAKSQND------QILGQAGLPI---FMGAFTFVGLA-- 320
            V ++I          P+ +R  +++ D      Q LG     I   F+GA + V +   
Sbjct: 222 AVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEW 281
Query: 321 --ITCSTQVIFGRVISSPIQLLDQXXXXXXXXXXXXXXSLATITTNIXXXXXXXXXXXXX 378
             +   T+V+ G  +S P+ +L Q               LAT +TN              
Sbjct: 282 NPVIAITEVVGG--VSIPMAILFQVFVL-----------LATWSTNPAANLLSPAYTLCS 328
Query: 379 XRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLI 438
             P +FTF+ G I++A++G+   PW+        + T+L   ++ LGP+ GI+++DY+L+
Sbjct: 329 TFPRVFTFKTGVIVSAVVGLLMMPWQF----AGVLNTFLNLLASALGPLAGIMISDYFLV 384
Query: 439 QGAKLSIKYLYSLNPNGAYYYSGGYN 464
           +  ++S+  LY     G Y Y  G N
Sbjct: 385 RRRRISLHDLY--RTKGIYTYWRGVN 408
>pdb|2X79|A Chain A, Inward Facing Conformation Of Mhp1 Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 1e-109
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Length = 501 Back     alignment and structure
 Score =  335 bits (860), Expect = e-109
 Identities = 101/496 (20%), Positives = 190/496 (38%), Gaps = 76/496 (15%)

Query: 67  NDDLEPHLTLRNEDLKPSTINERTFSC---------------------LVDLGMAWWQGI 105
           +  +E   +L N    P+   ER+                         +      WQ I
Sbjct: 3   STPIEEARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVI 62

Query: 106 ATVVAANVILLVPLVLTGHPGTKYGIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIET 165
             + A   I ++ L  T     ++GI F V AR  FGI+G+ IP  L+AL+   W+G +T
Sbjct: 63  VAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQT 122

Query: 166 WIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELE 225
           W+G  A+  +                 L          + F   Q+   + GI  IR + 
Sbjct: 123 WLGALALDEI--------------TRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMN 168

Query: 226 KYSAPILIILTSSFLFWAYVNAGGFGHMLSKSSKLSSSEFWSLFFPSLTANISFWATVAL 285
            +++P+L+ +    ++     A      +     +        F  ++   +  W  V +
Sbjct: 169 VFASPVLLAMGVYMVYLMLDGADVSLGEV---MSMGGENPGMPFSTAIMIFVGGWIAVVV 225

Query: 286 NIPDFTRYAKSQNDQILGQA---------GLPIFMGAFTFVGLAITCSTQVIFGRVISSP 336
           +I D  +  K   +                  + M   + +   I  ++ V+ G    +P
Sbjct: 226 SIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVG--EWNP 283

Query: 337 IQLLDQIGGITTR---ILGIIGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILT 393
           +  + ++ G  +    IL  + + LAT +TN AAN+++PA  L +  P +FTF+ G I++
Sbjct: 284 VIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVS 343

Query: 394 ALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGIILADYYLIQGAKLSIKYLYSLNP 453
           A++G+   PW+      +F    L   ++ LGP+ GI+++DY+L++  ++S+  LY    
Sbjct: 344 AVVGLLMMPWQFAGVLNTF----LNLLASALGPLAGIMISDYFLVRRRRISLHDLYR--T 397

Query: 454 NGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLAGF 513
            G Y Y  G N VA+   ++ +                         +  +      A  
Sbjct: 398 KGIYTYWRGVNWVALAVYAVALAVSFL------------------TPDLMFVTGLIAALL 439

Query: 514 VYWVLSLLRGKQNSPP 529
           ++        K     
Sbjct: 440 LHIPAMRWVAKTFPLF 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 100.0
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.24
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.04
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 97.96
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 97.74
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 97.54
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.0
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
Probab=100.00  E-value=6.8e-68  Score=576.95  Aligned_cols=403  Identities=25%  Similarity=0.426  Sum_probs=350.2

Q ss_pred             CCCccccCCCCCCCCCCccch----------------------hhhhccCcHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009276           72 PHLTLRNEDLKPSTINERTFS----------------------CLVDLGMAWWQGIATVVAANVILLVPLVLTGHPGTKY  129 (538)
Q Consensus        72 ~~~~~~n~dl~Pip~~~Rtw~----------------------s~~~~GLs~~qal~aiiiG~~i~~~~~~l~g~~G~k~  129 (538)
                      .++++||+|++|+|+|||+|+                      .+.+ ||++||+++++++|++++++++++++.+|+|+
T Consensus         8 ~~~~~e~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~   86 (501)
T 2jln_A            8 EARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW   86 (501)
T ss_dssp             CCCBCCCSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCCccccCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence            356799999999999999987                      2344 99999999999999999999999999999999


Q ss_pred             CCCcceehhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCChhHHHHHHHHHHH
Q 009276          130 GIPFPVLARSSFGIKGAHIPTLLRALVGCGWYGIETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLA  209 (538)
Q Consensus       130 Gl~~~v~sR~~FG~~Gs~lp~li~~i~~igW~~v~~~~gg~al~~~l~~~~~~~~~~~~~~p~~g~t~~~~i~~ii~~~l  209 (538)
                      |+|+++++|.+||++|+++|+++|.++++||+++|++.+|++++.+++.+++.             . ..++++++++++
T Consensus        87 Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-------------~-~~~v~~~i~~~l  152 (501)
T 2jln_A           87 GINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-------------T-NLPLWIVIFGAI  152 (501)
T ss_dssp             CCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------C-CHHHHHHHHHHH
T ss_pred             CCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------c-hHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988766521             1 157899999999


Q ss_pred             HHHHHhhchhhHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC--cccccccccCCchhhHHHHHHHHHHHHHHHHhHhccc
Q 009276          210 QLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGF--GHMLSKSSKLSSSEFWSLFFPSLTANISFWATVALNI  287 (538)
Q Consensus       210 ~~~~~~~G~~~i~~~~~~~~p~~~v~~i~l~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~ai~~~ig~~~~~~~~~  287 (538)
                      +++++++|+|.++++++++.|+++++++++.+|.+.+.+ .  ++..+.++.    ..++.++.+++.++++++++++++
T Consensus       153 ~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g-~~~~~~~~~~~~----~~~~~f~~ai~~~~~~~~~~~~~~  227 (501)
T 2jln_A          153 QVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGAD-VSLGEVMSMGGE----NPGMPFSTAIMIFVGGWIAVVVSI  227 (501)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHTTCCCS----SCCSCHHHHHHHHHTTTHHHHTTT
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchhhhccCCc----cchHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999888888887755 3  333332221    123457788888899999999999


Q ss_pred             cccccccccCCc------------chhhc-hhhhHHHHHHHHHHHHHhhhhhhhhhccccCHHHHHHH-hhhhHH-HHHH
Q 009276          288 PDFTRYAKSQND------------QILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQ-IGGITT-RILG  352 (538)
Q Consensus       288 sDysRy~k~~~~------------~~~g~-~g~p~~~~~~~~~G~~~~~a~~~~~G~~~~dp~~~l~~-~g~~~~-~~~~  352 (538)
                      +||+||+|++++            ..+++ +|+++...++.++|++++.+      +..|||.+++.+ ++++.. .+++
T Consensus       228 ~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~  301 (501)
T 2jln_A          228 HDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAIL  301 (501)
T ss_dssp             HHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHH
T ss_pred             CcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHH
Confidence            999999999999            78888 89999988899999876653      235899999887 444433 5777


Q ss_pred             H-HHHHHHHHHHhhhhhhhhhHHhHhhhcCcccccchhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhhhHhHHHHHH
Q 009276          353 I-IGISLATITTNIAANVVAPANALVNLRPSIFTFRKGAILTALLGIAFQPWRLLKSSESFVYTWLVGYSALLGPIGGII  431 (538)
Q Consensus       353 ~-l~i~la~i~~Ni~~N~ys~~~~l~~l~pk~~~~~r~~ii~avl~~~l~pw~l~~~~~~fl~~fL~~lg~~l~P~~gI~  431 (538)
                      + ++++++++++|+.+|.||+++++++++||++++|++.+++++++++++||+   +.+.|. +||+.+|++++||+||+
T Consensus       302 ~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~~~~~~i~~vi~~~i~~~~---~~~~f~-~FL~~lg~~l~P~~gI~  377 (501)
T 2jln_A          302 FQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQ---FAGVLN-TFLNLLASALGPLAGIM  377 (501)
T ss_dssp             HHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHTCGGG---THHHHH-HHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHH---hHHHHH-HHHHHHHHHHHHHHHHH
Confidence            8 899999999997569999999999999998889999999999999999997   234555 89999999999999999


Q ss_pred             hhhhhhhhcCCCCcccccccCCCCcccccCCCchHHHHHHHHHHhhccccccccccccccccccchhccchhHHHHHHHH
Q 009276          432 LADYYLIQGAKLSIKYLYSLNPNGAYYYSGGYNLVAIMALSIGILPVIPGFLQKVGLVVTIPNSFVVIYNNAWFFSFFLA  511 (538)
Q Consensus       432 l~Dy~liRr~~~~~~~Ly~~~~~g~Y~y~~G~N~~ai~A~~~G~~~~~pg~~~~~g~~~~~~~~~~~~~~~s~~~g~~vs  511 (538)
                      ++|||++||++||++|+|+  |+|+|||++|+||+|++||++|+++++|                  .+|++|++|++++
T Consensus       378 l~Dy~i~rr~~~~~~~l~~--~~g~y~y~~g~n~~a~~a~~~G~~~~~~------------------~~~~~~~~g~~va  437 (501)
T 2jln_A          378 ISDYFLVRRRRISLHDLYR--TKGIYTYWRGVNWVALAVYAVALAVSFL------------------TPDLMFVTGLIAA  437 (501)
T ss_dssp             HHHHHTTSTTCCCHHHHTB--SSSTTCTBTTBCHHHHHHHHHHHHHHHT------------------CGGGHHHHHHHHH
T ss_pred             HHHHHhhhcccCChHHhhC--CCCccccCCCCCHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHH
Confidence            9999999999999999995  5799999999999999999999998654                  2578999999999


Q ss_pred             HHHHHHHhhccCC
Q 009276          512 GFVYWVLSLLRGK  524 (538)
Q Consensus       512 ~vvY~~l~~~~~~  524 (538)
                      +++|++++|..++
T Consensus       438 ~v~Y~~l~~~~~~  450 (501)
T 2jln_A          438 LLLHIPAMRWVAK  450 (501)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCch
Confidence            9999999977543
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 90.15
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.15  E-value=10  Score=37.79  Aligned_cols=46  Identities=24%  Similarity=0.543  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHhhch-hhHHHHHhhhhhHHHHHHHHHHHHHH
Q 009276          199 EFACFIAFWLAQLAIVWKGI-EGIRELEKYSAPILIILTSSFLFWAY  244 (538)
Q Consensus       199 ~~i~~ii~~~l~~~~~~~G~-~~i~~~~~~~~p~~~v~~i~l~~~~~  244 (538)
                      .++++++.+.+...+.+.|. +.+++..++..|.+.+..+.++++.+
T Consensus       164 ~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~~~l~i~~~  210 (509)
T d2a65a1         164 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVF  210 (509)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            44555566666666777776 77999999999887766655555544