Citrus Sinensis ID: 009277
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W496 | 559 | Protochlorophyllide-depen | yes | no | 0.949 | 0.914 | 0.624 | 0.0 | |
| Q9FYC2 | 537 | Pheophorbide a oxygenase, | no | no | 0.812 | 0.813 | 0.336 | 3e-68 | |
| O49931 | 553 | Protein TIC 55, chloropla | N/A | no | 0.739 | 0.719 | 0.260 | 6e-43 | |
| Q9SK50 | 539 | Protein TIC 55, chloropla | no | no | 0.682 | 0.680 | 0.280 | 6e-40 | |
| Q9XJ38 | 463 | Chlorophyllide a oxygenas | N/A | no | 0.509 | 0.591 | 0.267 | 3e-17 | |
| Q9ZWM5 | 645 | Chlorophyllide a oxygenas | N/A | no | 0.578 | 0.482 | 0.252 | 3e-16 | |
| Q8S7E1 | 541 | Chlorophyllide a oxygenas | no | no | 0.650 | 0.646 | 0.239 | 4e-13 | |
| Q9MBA1 | 536 | Chlorophyllide a oxygenas | no | no | 0.524 | 0.526 | 0.242 | 4e-11 | |
| P12609 | 329 | Vanillate O-demethylase o | N/A | no | 0.516 | 0.844 | 0.227 | 3e-10 | |
| Q9AHG3 | 346 | Putative toluene-4-sulfon | no | no | 0.362 | 0.563 | 0.253 | 9e-09 |
| >sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1 | Back alignment and function desciption |
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Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/541 (62%), Positives = 410/541 (75%), Gaps = 30/541 (5%)
Query: 27 TKPKF-LSFQFSSL----STLSSFSSKPYKIFTTLSPSSQVSTEATDPPERELETNSQEE 81
TKP+F SF SL ++L + S + + PSS +T PPE E +
Sbjct: 18 TKPRFRCSFSNPSLPISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSD 77
Query: 82 KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG 141
KFDW++ WYP+MP+CDLDK+VPH KKV+G+D+VVWWDRNE +W+V D CPHRLAPLS+G
Sbjct: 78 KFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDG 137
Query: 142 RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWP 201
RIDQWGRLQCVYHGWCF+GSGDCK IPQAPPDGPPVHTF++AC AVYPSTVQH+I+WFWP
Sbjct: 138 RIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIWFWP 197
Query: 202 NIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLM 261
N P+YK+II+T KPP+IPEL+DPSFTKL GNRDIPYGY+VL+ENLMDPAHVPYAHYGLM
Sbjct: 198 NSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVENLMDPAHVPYAHYGLM 257
Query: 262 RTRKPK-----------------------VKLDREGGRPVEMSVNKIDINGFIGKQEWGS 298
R KPK K+DREGG+P+E++V K+D GF KQEWG
Sbjct: 258 RFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSKQEWGY 317
Query: 299 SKFLAPCIFFAYTDLMKDQENGSASSAGAEK-KLEQQRAALIFICVPVSPGHSRLIWAFP 357
S F+APC++ + TD + +QE+ + A ++K L ++R +LIFIC+PVSPG SRLIW FP
Sbjct: 318 SNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRLIWTFP 377
Query: 358 RNFQTWIDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALV 417
RNF +IDK+VPRW+FHIGQN ILDSDL+LLHVEERKI++ GP NWQKACF+PTK+DA V
Sbjct: 378 RNFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANV 437
Query: 418 VGFRRWLKKYAGGQFNWGGKFNA-TLPPTPPREQLMDRYWSHVVNCKSCNAAHKSLSALE 476
V FRRW KY+ + +W GKF+ LPPTPPREQL DRYWSHV NC SC AHK L+ALE
Sbjct: 438 VTFRRWFNKYSEARVDWRGKFDPFLLPPTPPREQLFDRYWSHVENCSSCKKAHKYLNALE 497
Query: 477 VTLQVVSIASIGIVATTKQNAMSMATRTTIISFAVICFAASKWLSHFIYKTFHYHDYNHA 536
V LQ+ S+A IG++A KQ MS R ++ AV+ FAASKWLSHFIYKTFHYHDYNHA
Sbjct: 498 VILQIASVAMIGVMAVLKQTTMSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHA 557
Query: 537 L 537
+
Sbjct: 558 V 558
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Part of a translocon most abundantly expressed in etiolated plants and involved in the protochlorophyllide-dependent import of the precursor NADPH:protochlorophyllide oxidoreductase A (pPORA). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1 | Back alignment and function description |
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| >sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1 | Back alignment and function description |
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| >sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| 255585393 | 552 | pheophorbide A oxygenase, putative [Rici | 0.955 | 0.931 | 0.722 | 0.0 | |
| 359478456 | 532 | PREDICTED: protochlorophyllide-dependent | 0.890 | 0.900 | 0.753 | 0.0 | |
| 356525253 | 531 | PREDICTED: pheophorbide a oxygenase, chl | 0.944 | 0.956 | 0.688 | 0.0 | |
| 357518875 | 529 | Pheophorbide a oxygenase [Medicago trunc | 0.973 | 0.990 | 0.668 | 0.0 | |
| 356512495 | 529 | PREDICTED: pheophorbide a oxygenase, chl | 0.938 | 0.954 | 0.680 | 0.0 | |
| 357518871 | 546 | Pheophorbide a oxygenase [Medicago trunc | 0.923 | 0.910 | 0.667 | 0.0 | |
| 357518865 | 532 | Pheophorbide a oxygenase [Medicago trunc | 0.920 | 0.930 | 0.667 | 0.0 | |
| 18416592 | 536 | ACD1-like protein [Arabidopsis thaliana] | 0.949 | 0.953 | 0.652 | 0.0 | |
| 30686966 | 559 | ACD1-like protein [Arabidopsis thaliana] | 0.949 | 0.914 | 0.624 | 0.0 | |
| 449452680 | 544 | PREDICTED: protochlorophyllide-dependent | 0.992 | 0.981 | 0.604 | 0.0 |
| >gi|255585393|ref|XP_002533392.1| pheophorbide A oxygenase, putative [Ricinus communis] gi|223526766|gb|EEF28992.1| pheophorbide A oxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/534 (72%), Positives = 448/534 (83%), Gaps = 20/534 (3%)
Query: 23 KTHFTKPKFLSFQFSSLSTLSSFS-----SKPYKIFTTLSP------------SSQVSTE 65
KT F+KP L+F F+++ T SSFS + K+++T+S + VSTE
Sbjct: 21 KTKFSKPN-LNFHFNAVPT-SSFSKTHKNASKSKLYSTISSSSSSSSSSSPPSAYSVSTE 78
Query: 66 ATDPPERELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWR 125
+ + P+ ELET+ Q +KFDW+S WYP+MPVCDLDKRVPHAKKVLG+DVVVWWDRNENEWR
Sbjct: 79 SIEAPQPELETDIQGDKFDWYSAWYPVMPVCDLDKRVPHAKKVLGIDVVVWWDRNENEWR 138
Query: 126 VFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACA 185
VF D CPHRLAPLSEGRIDQWGRLQCVYHGWCF+GSGDCK+IPQAP DGPPVHTF KAC
Sbjct: 139 VFDDTCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKYIPQAPADGPPVHTFNKACV 198
Query: 186 AVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLE 245
A YPSTV HDI+WFWPN P+YKDI+ +KPP IPELDDPS+TK GNRDIPYGY+ L+E
Sbjct: 199 AAYPSTVHHDILWFWPNTDPQYKDILMKEKPPFIPELDDPSYTKTMGNRDIPYGYDFLIE 258
Query: 246 NLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQEWGSSKFLAPC 305
NLMDPAHVPYAHYGLM+ R+PK K+DREGG+P++MSV K+D NGFIGKQE GSSKF+APC
Sbjct: 259 NLMDPAHVPYAHYGLMKIRQPKEKVDREGGKPIDMSVKKLDKNGFIGKQEKGSSKFIAPC 318
Query: 306 IFFAYTDLMKDQENGSASSAGAEKKLE-QQRAALIFICVPVSPGHSRLIWAFPRNFQTWI 364
IF+AYTD + DQ NG+ SS+ +KKL QQRAAL+FIC+PVSPG+SRLIWAFPRNF WI
Sbjct: 319 IFYAYTDPLVDQGNGAVSSSETKKKLSVQQRAALVFICIPVSPGNSRLIWAFPRNFGVWI 378
Query: 365 DKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWL 424
DK+ PRW+FH+GQNLILDSDLYLLHVEERKI D+G ANWQKACFVPTK+DALVVGFR+WL
Sbjct: 379 DKIFPRWMFHVGQNLILDSDLYLLHVEERKITDIGVANWQKACFVPTKSDALVVGFRKWL 438
Query: 425 KKYAGGQFNWGGKFNATLPPTPPREQLMDRYWSHVVNCKSCNAAHKSLSALEVTLQVVSI 484
YAGGQ +W GK+N LPPTPPREQLMDRYWSHVVNC SCNAAHK L+ALEV LQVVS+
Sbjct: 439 NNYAGGQVDWRGKYNGALPPTPPREQLMDRYWSHVVNCSSCNAAHKGLNALEVILQVVSL 498
Query: 485 ASIGIVATTKQNAMSMATRTTIISFAVICFAASKWLSHFIYKTFHYHDYNHALR 538
IGIVA KQ+ +S A RTT+++ AV CFAAS+WL+HFIYK+FHYHDYNHALR
Sbjct: 499 VLIGIVAAAKQSVLSAAARTTLVAVAVACFAASRWLAHFIYKSFHYHDYNHALR 552
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478456|ref|XP_002283592.2| PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356525253|ref|XP_003531241.1| PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357518875|ref|XP_003629726.1| Pheophorbide a oxygenase [Medicago truncatula] gi|355523748|gb|AET04202.1| Pheophorbide a oxygenase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356512495|ref|XP_003524954.1| PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357518871|ref|XP_003629724.1| Pheophorbide a oxygenase [Medicago truncatula] gi|355523746|gb|AET04200.1| Pheophorbide a oxygenase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357518865|ref|XP_003629721.1| Pheophorbide a oxygenase [Medicago truncatula] gi|355523743|gb|AET04197.1| Pheophorbide a oxygenase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|18416592|ref|NP_567725.1| ACD1-like protein [Arabidopsis thaliana] gi|15983402|gb|AAL11569.1|AF424575_1 AT4g25650/L73G19_30 [Arabidopsis thaliana] gi|15810259|gb|AAL07017.1| unknown protein [Arabidopsis thaliana] gi|37962888|gb|AAR05798.1| LLS1-like protein [Arabidopsis thaliana] gi|332659688|gb|AEE85088.1| ACD1-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|30686966|ref|NP_849444.1| ACD1-like protein [Arabidopsis thaliana] gi|75248733|sp|Q8W496.1|PTC52_ARATH RecName: Full=Protochlorophyllide-dependent translocon component 52, chloroplastic; AltName: Full=ACD1-like protein; AltName: Full=Protein TIC 55-IV; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 55-IV; Flags: Precursor gi|17065310|gb|AAL32809.1| Unknown protein [Arabidopsis thaliana] gi|27311961|gb|AAO00946.1| Unknown protein [Arabidopsis thaliana] gi|332659689|gb|AEE85089.1| ACD1-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449452680|ref|XP_004144087.1| PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| TAIR|locus:2131406 | 559 | ACD1-LIKE "AT4G25650" [Arabido | 0.403 | 0.388 | 0.731 | 1.4e-196 | |
| TAIR|locus:2082122 | 537 | ACD1 "ACCELERATED CELL DEATH 1 | 0.838 | 0.839 | 0.341 | 8.2e-67 | |
| TAIR|locus:2047329 | 539 | TIC55-II "translocon at the in | 0.789 | 0.788 | 0.273 | 3.7e-39 | |
| TAIR|locus:2823671 | 536 | CH1 "CHLORINA 1" [Arabidopsis | 0.278 | 0.279 | 0.298 | 8.9e-10 | |
| UNIPROTKB|P71875 | 386 | kshA "3-ketosteroid-9-alpha-mo | 0.347 | 0.484 | 0.248 | 4.5e-08 | |
| UNIPROTKB|Q48IV9 | 354 | vanA "Vanillate monooxygenase, | 0.286 | 0.435 | 0.264 | 4.9e-07 | |
| UNIPROTKB|Q4KB09 | 352 | vanA "Vanillate O-demethylase, | 0.288 | 0.440 | 0.260 | 6.2e-07 |
| TAIR|locus:2131406 ACD1-LIKE "AT4G25650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 965 (344.8 bits), Expect = 1.4e-196, Sum P(2) = 1.4e-196
Identities = 161/220 (73%), Positives = 186/220 (84%)
Query: 53 FTTL---SPSSQVSTEATDPPERELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVL 109
FTT PSS +T PPE E +KFDW++ WYP+MP+CDLDK+VPH KKV+
Sbjct: 46 FTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVM 105
Query: 110 GLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQ 169
G+D+VVWWDRNE +W+V D CPHRLAPLS+GRIDQWGRLQCVYHGWCF+GSGDCK IPQ
Sbjct: 106 GIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQ 165
Query: 170 APPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTK 229
APPDGPPVHTF++AC AVYPSTVQH+I+WFWPN P+YK+II+T KPP+IPEL+DPSFTK
Sbjct: 166 APPDGPPVHTFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTK 225
Query: 230 LFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKVK 269
L GNRDIPYGY+VL+ENLMDPAHVPYAHYGLMR KPK K
Sbjct: 226 LMGNRDIPYGYDVLVENLMDPAHVPYAHYGLMRFPKPKGK 265
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| TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P71875 kshA "3-ketosteroid-9-alpha-monooxygenase oxygenase subunit" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8W496 | PTC52_ARATH | No assigned EC number | 0.6247 | 0.9498 | 0.9141 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.14.12 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 538 | |||
| PLN02518 | 539 | PLN02518, PLN02518, pheophorbide a oxygenase | 2e-94 | |
| cd03480 | 138 | cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron | 2e-73 | |
| COG4638 | 367 | COG4638, HcaE, Phenylpropionate dioxygenase and re | 2e-38 | |
| pfam08417 | 91 | pfam08417, PaO, Pheophorbide a oxygenase | 3e-27 | |
| cd03469 | 118 | cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o | 4e-24 | |
| cd04338 | 134 | cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L | 8e-23 | |
| pfam00355 | 99 | pfam00355, Rieske, Rieske [2Fe-2S] domain | 3e-18 | |
| cd03532 | 116 | cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem | 3e-15 | |
| PLN02281 | 536 | PLN02281, PLN02281, chlorophyllide a oxygenase | 2e-14 | |
| cd03467 | 98 | cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster | 2e-12 | |
| cd04337 | 129 | cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o | 7e-12 | |
| cd03479 | 144 | cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem | 1e-11 | |
| PLN00095 | 394 | PLN00095, PLN00095, chlorophyllide a oxygenase; Pr | 2e-08 | |
| COG2146 | 106 | COG2146, {NirD}, Ferredoxin subunits of nitrite re | 7e-08 | |
| cd03531 | 115 | cd03531, Rieske_RO_Alpha_KSH, The alignment model | 7e-07 | |
| cd03537 | 123 | cd03537, Rieske_RO_Alpha_PrnD, This alignment mode | 6e-05 | |
| cd08878 | 196 | cd08878, RHO_alpha_C_DMO-like, C-terminal catalyti | 2e-04 | |
| cd03530 | 98 | cd03530, Rieske_NirD_small_Bacillus, Small subunit | 5e-04 | |
| cd03478 | 95 | cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f | 8e-04 | |
| cd03536 | 123 | cd03536, Rieske_RO_Alpha_DTDO, This alignment mode | 0.002 |
| >gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase | Back alignment and domain information |
|---|
Score = 297 bits (763), Expect = 2e-94
Identities = 189/550 (34%), Positives = 271/550 (49%), Gaps = 70/550 (12%)
Query: 27 TKPKFLSFQFSSLSTLSSFSSKPY--KIFTTL---SPSSQVSTEATDPPERE-------L 74
+ PK F + + SS+P KIFT L +P S S A E E L
Sbjct: 17 STPKSTPFFIPARTIPFVSSSRPRRGKIFTPLRVAAPPSVPSEAALQQDEGEEQRVEQEL 76
Query: 75 ETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHR 134
S + KF W WYP+ V DLD VP ++LG D+V+W D N+ EW F D CPHR
Sbjct: 77 GQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHR 136
Query: 135 LAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFE--KACAAVYPSTV 192
LAPLSEGRID+ G LQC YHGW F G G C IPQA P+GP + +ACA +P+ V
Sbjct: 137 LAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMV 196
Query: 193 QHDIVWFWPNIAPRYKDIIKTKKPPHIP-ELDDPSFTKLFGNRDIPYGYEVLLENLMDPA 251
+++ WP+ + + KPP +P E DDP F+ + RD+ YGY+ L+EN+ DP+
Sbjct: 197 SQGLLFVWPD--ENGWERAQATKPPMLPDEFDDPEFSTVTIQRDLFYGYDTLMENVSDPS 254
Query: 252 HVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQEWG---SSKFLAPCIFF 308
H+ +AH+ KV R+ +P+ V GF G ++KF+APC +
Sbjct: 255 HIDFAHH--------KVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYY- 305
Query: 309 AYTDLMKDQENGSASSAGAEKKLEQQRAALIFIC---VPVSPGHSRLIWAFPRNFQT--- 362
+ E + ++K I+IC VP++PG +R I RNF
Sbjct: 306 -----INKIEIDTKLPIVGDQKWV------IWICSFNVPMAPGKTRSIVCSARNFFQFSM 354
Query: 363 -----WIDKVVPRWIFHIGQNLILDSDLYLLHVEERKIM--------DVGPANWQKACFV 409
W ++VPRW H N + D D+ +L +E+ + DV A + K F
Sbjct: 355 PGPAWW--QLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSKSGEGSADVN-AQYTKLTFT 411
Query: 410 PTKADALVVGFRRWLKKYAGGQFNWGGKFNATLPPTP---PREQLMDRYWSHVVNCKSCN 466
PT+AD V+ FR WL+++ Q W G+ ++ P + Q++DR+ H +NC SC
Sbjct: 412 PTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQMLDRFEQHTLNCSSCK 471
Query: 467 AAHKSLSALEVTLQVVSIASIGIVATTKQNAMSMATRTTIISFAVICFAASKWLSHFIYK 526
A+K+ TLQ V I + + A T + R + A+I AAS + + K
Sbjct: 472 GAYKAFQ----TLQKVLIGATVVFAATAGIPSDVQLRLILAGLALIS-AASAYALKELEK 526
Query: 527 TFHYHDYNHA 536
F + DY HA
Sbjct: 527 NFVFVDYVHA 536
|
Length = 539 |
| >gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|219832 pfam08417, PaO, Pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain | Back alignment and domain information |
|---|
| >gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >gnl|CDD|176887 cd08878, RHO_alpha_C_DMO-like, C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
| >gnl|CDD|239610 cd03536, Rieske_RO_Alpha_DTDO, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| PLN02518 | 539 | pheophorbide a oxygenase | 100.0 | |
| PLN02281 | 536 | chlorophyllide a oxygenase | 100.0 | |
| PLN00095 | 394 | chlorophyllide a oxygenase; Provisional | 100.0 | |
| COG4638 | 367 | HcaE Phenylpropionate dioxygenase and related ring | 100.0 | |
| TIGR03229 | 433 | benzo_1_2_benA benzoate 1,2-dioxygenase, large sub | 100.0 | |
| TIGR03228 | 438 | anthran_1_2_A anthranilate 1,2-dioxygenase, large | 100.0 | |
| cd03480 | 138 | Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase | 99.97 | |
| cd04338 | 134 | Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate | 99.97 | |
| cd03537 | 123 | Rieske_RO_Alpha_PrnD This alignment model represen | 99.97 | |
| cd04337 | 129 | Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) | 99.96 | |
| cd03479 | 144 | Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy | 99.95 | |
| cd03531 | 115 | Rieske_RO_Alpha_KSH The alignment model represents | 99.95 | |
| cd03545 | 150 | Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox | 99.95 | |
| cd03548 | 136 | Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy | 99.95 | |
| cd03532 | 116 | Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy | 99.95 | |
| cd03472 | 128 | Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy | 99.95 | |
| cd03539 | 129 | Rieske_RO_Alpha_S5H This alignment model represent | 99.95 | |
| cd03541 | 118 | Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase | 99.94 | |
| cd03535 | 123 | Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase | 99.94 | |
| cd03538 | 146 | Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena | 99.94 | |
| cd03469 | 118 | Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( | 99.93 | |
| cd03536 | 123 | Rieske_RO_Alpha_DTDO This alignment model represen | 99.93 | |
| cd03542 | 123 | Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas | 99.91 | |
| cd03528 | 98 | Rieske_RO_ferredoxin Rieske non-heme iron oxygenas | 99.91 | |
| cd03530 | 98 | Rieske_NirD_small_Bacillus Small subunit of nitrit | 99.9 | |
| cd03529 | 103 | Rieske_NirD Assimilatory nitrite reductase (NirD) | 99.9 | |
| cd03474 | 108 | Rieske_T4moC Toluene-4-monooxygenase effector prot | 99.89 | |
| TIGR02377 | 101 | MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE | 99.88 | |
| TIGR02378 | 105 | nirD_assim_sml nitrite reductase [NAD(P)H], small | 99.88 | |
| PRK09965 | 106 | 3-phenylpropionate dioxygenase ferredoxin subunit; | 99.87 | |
| cd03478 | 95 | Rieske_AIFL_N AIFL (apoptosis-inducing factor like | 99.87 | |
| PRK09511 | 108 | nirD nitrite reductase small subunit; Provisional | 99.84 | |
| PF13806 | 104 | Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A | 99.83 | |
| PF00355 | 97 | Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 | 99.83 | |
| COG2146 | 106 | {NirD} Ferredoxin subunits of nitrite reductase an | 99.81 | |
| cd03467 | 98 | Rieske Rieske domain; a [2Fe-2S] cluster binding d | 99.8 | |
| cd03477 | 91 | Rieske_YhfW_C YhfW family, C-terminal Rieske domai | 99.79 | |
| cd08878 | 196 | RHO_alpha_C_DMO-like C-terminal catalytic domain o | 99.77 | |
| cd03476 | 126 | Rieske_ArOX_small Small subunit of Arsenite oxidas | 99.7 | |
| PF08417 | 92 | PaO: Pheophorbide a oxygenase; InterPro: IPR013626 | 99.69 | |
| cd03471 | 126 | Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co | 99.65 | |
| cd00680 | 188 | RHO_alpha_C C-terminal catalytic domain of the oxy | 99.65 | |
| cd03473 | 107 | Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha | 99.62 | |
| cd08885 | 190 | RHO_alpha_C_1 C-terminal catalytic domain of the o | 99.59 | |
| TIGR02694 | 129 | arsenite_ox_S arsenite oxidase, small subunit. Thi | 99.59 | |
| cd08883 | 175 | RHO_alpha_C_CMO-like C-terminal catalytic domain o | 99.57 | |
| cd03470 | 126 | Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co | 99.51 | |
| cd08887 | 185 | RHO_alpha_C_3 C-terminal catalytic domain of the o | 99.49 | |
| cd08884 | 205 | RHO_alpha_C_GbcA-like C-terminal catalytic domain | 99.44 | |
| cd08886 | 182 | RHO_alpha_C_2 C-terminal catalytic domain of the o | 99.44 | |
| PRK13474 | 178 | cytochrome b6-f complex iron-sulfur subunit; Provi | 99.39 | |
| PF00848 | 209 | Ring_hydroxyl_A: Ring hydroxylating alpha subunit | 99.35 | |
| TIGR01416 | 174 | Rieske_proteo ubiquinol-cytochrome c reductase, ir | 99.24 | |
| cd08882 | 243 | RHO_alpha_C_MupW-like C-terminal catalytic domain | 98.95 | |
| cd08880 | 222 | RHO_alpha_C_ahdA1c-like C-terminal catalytic domai | 98.9 | |
| cd03475 | 171 | Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma | 98.74 | |
| PF11723 | 240 | Aromatic_hydrox: Homotrimeric ring hydroxylase; In | 98.3 | |
| cd08879 | 237 | RHO_alpha_C_AntDO-like C-terminal catalytic domain | 98.29 | |
| cd08881 | 206 | RHO_alpha_C_NDO-like C-terminal catalytic domain o | 98.21 | |
| COG0723 | 177 | QcrA Rieske Fe-S protein [Energy production and co | 97.91 | |
| KOG1671 | 210 | consensus Ubiquinol cytochrome c reductase, subuni | 97.44 | |
| TIGR03171 | 321 | soxL2 Rieske iron-sulfur protein SoxL2. This iron- | 97.34 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 94.67 |
| >PLN02518 pheophorbide a oxygenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-96 Score=791.83 Aligned_cols=440 Identities=36% Similarity=0.691 Sum_probs=359.0
Q ss_pred ccccccccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEe-CCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWD-RNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~-~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
+.+....+++|+|+++||+|+.++||++|+++.++++|++|||||+ .+ |+++||+|+||||+++||+|++++++.|+|
T Consensus 75 ~~~~~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~-G~~~A~~d~CPHRgapLS~G~v~~~g~L~C 153 (539)
T PLN02518 75 ELGQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQ-GEWVAFDDKCPHRLAPLSEGRIDENGHLQC 153 (539)
T ss_pred cccccccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCC-CeEEEEcccCcCcCCCcccceecCCCEEEc
Confidence 4444667889999999999999999988999999999999999998 65 899999999999999999999965679999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCC--CCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCC-CCCCCCCc
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPP--VHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIP-ELDDPSFT 228 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~--~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p-~l~~~~~~ 228 (538)
|||||+||++|+|+.||+.+..++. ...++++|+++|||+|++|+||||+++++.. .+....+|.++ ++++++|.
T Consensus 154 pYHGW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~--~a~~~~~P~~~~~~~~~~~~ 231 (539)
T PLN02518 154 SYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWE--RAQATKPPMLPDEFDDPEFS 231 (539)
T ss_pred CCCCCEEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCcccc--ccccccCCCCcccccCCCce
Confidence 9999999999999999986543221 1345678999999999999999999854211 12234667764 78888887
Q ss_pred eeeeeeEEeechHHHHHhcCCCCCCccccccccccCCCceEEeccCCeEEEEEEeccCCCCCCCCc---ccceeEEecce
Q 009277 229 KLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQ---EWGSSKFLAPC 305 (538)
Q Consensus 229 ~~~~~~~~~~~w~~l~EN~lD~~H~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Gf~~~~---~~~~~~f~~P~ 305 (538)
.....++++++|++++||++|++|++|+|++++|. ++.+.+..++++..+..||.+.. .+....|.+||
T Consensus 232 ~~~~~~~~~~~~~~l~EN~lD~sH~pfvH~~~~G~--------~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~ 303 (539)
T PLN02518 232 TVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR--------RDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPC 303 (539)
T ss_pred eEEEEEEEecCchhHHHhCCccchhceeccccccC--------ccccccccceEEEcCCCcccccccCCCceEEEEECCe
Confidence 76677899999999999999999999999999864 34444445555555556776522 34567899999
Q ss_pred EEEEeeccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCcc-------ccccccchhHHHHHhhh
Q 009277 306 IFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQ-------TWIDKVVPRWIFHIGQN 378 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~-------~~~~~~~prw~~h~~~~ 378 (538)
+++......... + ........+.++++++|+++|+||+||++.|||. .|+ +++|+|+.|..++
T Consensus 304 ~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~-k~~PrW~~h~~~n 373 (539)
T PLN02518 304 YYINKIEIDTKL---P------IVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWW-QLVPRWYEHWTSN 373 (539)
T ss_pred EEEEeeeeeccc---c------CCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhh-hcCchHHHHhhhc
Confidence 877644321100 0 0011223456778999999999999999999983 244 7899999999999
Q ss_pred HHHhhhHHHHHHHHhhhhccCC-------cccccccccCCccchHHHHHHHHHHHHHcCCCCCCCCCC--CCCCCC-CCh
Q 009277 379 LILDSDLYLLHVEERKIMDVGP-------ANWQKACFVPTKADALVVGFRRWLKKYAGGQFNWGGKFN--ATLPPT-PPR 448 (538)
Q Consensus 379 ~Vl~eD~~ile~qq~~l~~~g~-------~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g~~~w~~~~~--~~lp~~-~~~ 448 (538)
+|++||+.+||.||+.++..+. ++|++++|+|+++|++|++||||++++++|+++|+++++ .++|++ +++
T Consensus 374 ~Vl~~D~~~lh~Qe~~~~~~~~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~~~~~ 453 (539)
T PLN02518 374 KVYDGDMIVLQGQEKIFLSKSGEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSK 453 (539)
T ss_pred cchHhHHHHHHHHHHHHhhccccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCCCCCH
Confidence 9999999999999999877655 579999999999999999999999999999999998763 468888 599
Q ss_pred hhhHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 009277 449 EQLMDRYWSHVVNCKSCNAAHKSLSALEVTLQVVSIASIGIVATTKQNAMSMATRTTIISFAVICFAASKWLSHFIYKTF 528 (538)
Q Consensus 449 e~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~f 528 (538)
|||||||||||+||+||++|||+|+++|+++++++++++|++++.... .+ .+++++++++++++.|+.++++|+|
T Consensus 454 ~~lldRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~~~f 528 (539)
T PLN02518 454 RQMLDRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDV----QL-RLILAGLALISAASAYALKELEKNF 528 (539)
T ss_pred HHHhHHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----hH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999888877776555422 22 3444555666788899999999999
Q ss_pred EEeccCCCCC
Q 009277 529 HYHDYNHALR 538 (538)
Q Consensus 529 ~f~dy~ha~~ 538 (538)
||+||+||++
T Consensus 529 ~~~~~~~~~~ 538 (539)
T PLN02518 529 VFVDYVHAEI 538 (539)
T ss_pred eecCccCccC
Confidence 9999999985
|
|
| >PLN02281 chlorophyllide a oxygenase | Back alignment and domain information |
|---|
| >PLN00095 chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
| >cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
| >cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
| >cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) | Back alignment and domain information |
|---|
| >cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
| >cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium | Back alignment and domain information |
|---|
| >cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
| >TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit | Back alignment and domain information |
|---|
| >PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
| >cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
| >PRK09511 nirD nitrite reductase small subunit; Provisional | Back alignment and domain information |
|---|
| >PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A | Back alignment and domain information |
|---|
| >PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types | Back alignment and domain information |
|---|
| >COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain | Back alignment and domain information |
|---|
| >cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate | Back alignment and domain information |
|---|
| >PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO) | Back alignment and domain information |
|---|
| >cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >TIGR02694 arsenite_ox_S arsenite oxidase, small subunit | Back alignment and domain information |
|---|
| >cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols [] | Back alignment and domain information |
|---|
| >TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
| >cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp | Back alignment and domain information |
|---|
| >cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium | Back alignment and domain information |
|---|
| >cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 | Back alignment and domain information |
|---|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 538 | ||||
| 3gke_A | 349 | Crystal Structure Of Dicamba Monooxygenase Length = | 1e-12 | ||
| 2zyl_A | 386 | Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl | 2e-08 | ||
| 3vca_A | 412 | Quaternary Ammonium Oxidative Demethylation: X-Ray | 1e-05 | ||
| 3gcf_A | 394 | Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr | 2e-04 | ||
| 3n0q_A | 409 | Crystal Structure Of A Putative Aromatic-Ring Hydro | 5e-04 | ||
| 2bmo_A | 447 | The Crystal Structure Of Nitrobenzene Dioxygenase L | 7e-04 |
| >pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349 | Back alignment and structure |
|
| >pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386 | Back alignment and structure |
| >pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412 | Back alignment and structure |
| >pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394 | Back alignment and structure |
| >pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409 | Back alignment and structure |
| >pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase Length = 447 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 6e-81
Identities = 67/352 (19%), Positives = 116/352 (32%), Gaps = 39/352 (11%)
Query: 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWG 147
WY +L ++ P + +L + ++ + D CPHR APLS+G + G
Sbjct: 8 AWYVAALPEELSEK-PLGRTILDTPLALYRQP-DGVVAALLDICPHRFAPLSDGILVN-G 64
Query: 148 RLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRY 207
LQC YHG F G G C P P +P + ++W WP P
Sbjct: 65 HLQCPYHGLEFDGGGQCVHNPHGNGARPA-----SLNVRSFPVVERDALIWIWPG-DPAL 118
Query: 208 KDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-- 265
D P DP++ + G + Y++L++NLMD H Y H +T
Sbjct: 119 ADP---GAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQTDAFD 175
Query: 266 --PKVKLDREGGRPVEMSVNKIDINGFIGKQ---------EWGSSKFLAPCIFFAYTDLM 314
+ + +G M + + + K W ++ + +
Sbjct: 176 RLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVA 235
Query: 315 KDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFH 374
+ K + + I P + + RNF D + +
Sbjct: 236 PE----------GTPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGID-DPEMDGVLRS 284
Query: 375 IGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKK 426
++ D ++ ER+ V + D V R ++K
Sbjct: 285 WQAQALVKEDKVVVEAIERRRAYVEANGIRP---AMLSCDEAAVRVSREIEK 333
|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 | Back alignment and structure |
|---|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 | Back alignment and structure |
|---|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 | Back alignment and structure |
|---|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 | Back alignment and structure |
|---|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409 | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412 | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470 | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457 | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454 | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447 | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460 | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| 3gke_A | 349 | DDMC; rieske cluster, non-heme mononuclear iron, o | 100.0 | |
| 2zyl_A | 386 | Possible oxidoreductase; KSHA, cholesterol, rieske | 100.0 | |
| 1z01_A | 446 | 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen | 100.0 | |
| 3n0q_A | 409 | Putative aromatic-ring hydroxylating dioxygenase; | 100.0 | |
| 3vca_A | 412 | Ring-hydroxylating dioxygenase; rieske-type, monon | 100.0 | |
| 2de6_A | 392 | Terminal oxygenase component of carbazole; electro | 100.0 | |
| 3gkq_A | 389 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 3gcf_A | 394 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 2gbw_A | 454 | Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy | 100.0 | |
| 2bmo_A | 447 | Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni | 100.0 | |
| 2b1x_A | 470 | Naphthalene dioxygenase large subunit; rieske non- | 100.0 | |
| 1uli_A | 460 | Biphenyl dioxygenase large subunit; alpha3 BETA3 h | 100.0 | |
| 3gzx_A | 457 | Biphenyl dioxygenase subunit alpha; rieskie, non-h | 100.0 | |
| 2qpz_A | 103 | Naphthalene 1,2-dioxygenase system ferredoxin subu | 99.93 | |
| 2i7f_A | 108 | Ferredoxin component of dioxygenase; rieske ferred | 99.93 | |
| 2de6_D | 115 | Ferredoxin component of carbazole; electron transf | 99.93 | |
| 1fqt_A | 112 | Rieske-type ferredoxin of biphenyl dioxygenase; 2F | 99.93 | |
| 1vm9_A | 111 | Toluene-4-monooxygenase system protein C; structur | 99.93 | |
| 3dqy_A | 106 | Toluene 1,2-dioxygenase system ferredoxin subunit; | 99.92 | |
| 2jo6_A | 113 | Nitrite reductase [NAD(P)H] small subunit; all bet | 99.92 | |
| 2jza_A | 130 | Nitrite reductase [NAD(P)H] small subunit; ISP dom | 99.92 | |
| 3gce_A | 121 | Ferredoxin component of carbazole 1,9A- dioxygenas | 99.92 | |
| 3c0d_A | 119 | Putative nitrite reductase NADPH (small subunit) o | 99.92 | |
| 4aiv_A | 119 | Probable nitrite reductase [NAD(P)H] small subuni; | 99.92 | |
| 3d89_A | 157 | Rieske domain-containing protein; CAsp target, rie | 99.92 | |
| 1rie_A | 129 | Rieske iron-sulfur protein; oxidoreductase, cytoch | 99.81 | |
| 1rfs_A | 139 | Rieske protein; iron-sulfur protein, electron tran | 99.81 | |
| 1g8k_B | 133 | Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, | 99.79 | |
| 3azc_A | 133 | Cytochrome B6-F complex iron-sulfur subunit; riesk | 99.64 | |
| 4aay_B | 175 | AROB; oxidoreductase, rieske, iron sulfur, molybdo | 99.75 | |
| 1pp9_E | 196 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU | 99.67 | |
| 2qjy_C | 187 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.67 | |
| 2nwf_A | 141 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.67 | |
| 3cx5_E | 185 | Cytochrome B-C1 complex subunit rieske, mitochondr | 99.67 | |
| 1nyk_A | 165 | Rieske iron-sulfur protein; beta barrel, iron sulf | 99.66 | |
| 1vf5_D | 179 | Rieske iron-sulfur protein; photosynthesis, membra | 99.6 | |
| 1jm1_A | 204 | Rieske iron-sulfur protein SOXF; electron transpor | 99.5 |
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-53 Score=440.98 Aligned_cols=320 Identities=20% Similarity=0.305 Sum_probs=244.5
Q ss_pred cccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEeccCCcEEeCCCC
Q 009277 84 DWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGD 163 (538)
Q Consensus 84 ~~~~~W~~v~~~~dL~~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~CpYHGW~Fd~~G~ 163 (538)
.+++.||+||+++|| +|+++.++++|++|+|||+.+ |+++|++|+|||||++|+.|+++ ++.|+||||||+||.+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~CpHrg~~L~~G~~~-~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPD-GVVAALLDICPHRFAPLSDGILV-NGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCGGGCEEE-TTEEECTTTCCEECTTCC
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCC-CcEEEEeCcCCCCCcCCccCCcc-ceEEEECCCCCEEcCCCC
Confidence 467999999999999 899999999999999999876 89999999999999999999987 479999999999999999
Q ss_pred cccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCCCCcccccccCCCCCCCCCCCCCCceeeeeeEEeechHHH
Q 009277 164 CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVL 243 (538)
Q Consensus 164 c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~~~~~~w~~l 243 (538)
|+.+|+... ..+++.+|++|||++++|+||||+++++.. + ...+|.++++++++|.......++++|||++
T Consensus 81 ~~~~P~~~~-----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~-~---~~~~p~~~~~~~~~~~~~~~~~~~~~nwk~~ 151 (349)
T 3gke_A 81 CVHNPHGNG-----ARPASLNVRSFPVVERDALIWIWPGDPALA-D---PGAIPDFGCRVDPAYRTVGGYGHVDCNYKLL 151 (349)
T ss_dssp EEECCSTTC-----CCCGGGCCCBCCEEEETTEEEECCSCGGGC-C---GGGSCCCGGGGCTTSEEEEEEEEESSCHHHH
T ss_pred ccccCcccc-----ccccccccceeeEEEECCEEEEeeCCCCCC-c---ccccCCccccCCCCCEEEeEEEEEecCHHhH
Confidence 999996221 134578899999999999999999865322 1 1235666667777786555667899999999
Q ss_pred HHhcCCCCCCccccccccccCC---CceEEeccCCe-EEEEEEeccCCCC--------CCCCc-ccceeEEecceEEEEe
Q 009277 244 LENLMDPAHVPYAHYGLMRTRK---PKVKLDREGGR-PVEMSVNKIDING--------FIGKQ-EWGSSKFLAPCIFFAY 310 (538)
Q Consensus 244 ~EN~lD~~H~~~~H~~~~~~~~---p~~~~~~~~~~-~~~~~~~~~~~~G--------f~~~~-~~~~~~f~~P~~~~~~ 310 (538)
+||++|+||++++|+++++... ...+++.+++. .....+......+ ..+.. .+...+|.+||++...
T Consensus 152 ~EN~~D~~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~ 231 (349)
T 3gke_A 152 VDNLMDLGHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNF 231 (349)
T ss_dssp HHHHHCGGGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEE
T ss_pred HHhccccccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEE
Confidence 9999999999999999998643 22344444332 2222233222211 11111 3467899999987765
Q ss_pred eccccccccCCCcccccccccccccEEEEEEEEECCCCeEEEEEEeecCccccccccchhHHHHHhhhHHH-hhhHHHHH
Q 009277 311 TDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHIGQNLIL-DSDLYLLH 389 (538)
Q Consensus 311 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Pv~pg~tr~~~~~~r~~~~~~~~~~prw~~h~~~~~Vl-~eD~~ile 389 (538)
....+.+ .....+....+++++||+++++||++|.+.|||..+...+.+.|. .++++|| +||+.|||
T Consensus 232 ~~~~~~g----------~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~~--~~~~~if~~ED~~ile 299 (349)
T 3gke_A 232 IAVAPEG----------TPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVLR--SWQAQALVKEDKVVVE 299 (349)
T ss_dssp EEEEETT----------SCGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHHH--HHHHHHTTTHHHHHHH
T ss_pred EecccCC----------CCCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHHH--HHHhhhhhhhhHHHHH
Confidence 4332211 111233457788999999999999999999999876555555553 4578898 99999999
Q ss_pred HHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009277 390 VEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 430 (538)
Q Consensus 390 ~qq~~l~~~g~~~w~~~~~~p~~aD~~v~~fRrWl~~~~~g 430 (538)
.||+++...+. ...+++++++|+++++|||||++++..
T Consensus 300 ~Qq~~l~~~~~---~~~~~~~~~~D~~~v~~Rr~l~~l~~~ 337 (349)
T 3gke_A 300 AIERRRAYVEA---NGIRPAMLSCDEAAVRVSREIEKLEQL 337 (349)
T ss_dssp HHHHTHHHHHH---TTCCCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCc---cccccccccccHHHHHHHHHHHHHHHH
Confidence 99999876421 223468999999999999999999864
|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* | Back alignment and structure |
|---|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A | Back alignment and structure |
|---|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* | Back alignment and structure |
|---|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} | Back alignment and structure |
|---|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} | Back alignment and structure |
|---|
| >1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 | Back alignment and structure |
|---|
| >1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* | Back alignment and structure |
|---|
| >1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* | Back alignment and structure |
|---|
| >3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} | Back alignment and structure |
|---|
| >1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... | Back alignment and structure |
|---|
| >2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* | Back alignment and structure |
|---|
| >2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A | Back alignment and structure |
|---|
| >3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* | Back alignment and structure |
|---|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A | Back alignment and structure |
|---|
| >1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* | Back alignment and structure |
|---|
| >1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 538 | ||||
| d1z01a1 | 148 | b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m | 7e-20 | |
| d2de6a1 | 142 | b.33.1.2 (A:1-142) Terminal oxygenase component of | 8e-19 | |
| d1fqta_ | 109 | b.33.1.1 (A:) Rieske-type ferredoxin associated wi | 5e-12 | |
| d2jo6a1 | 108 | b.33.1.3 (A:1-108) NADH-nitrite reductase small su | 2e-11 | |
| d1ulia1 | 154 | b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub | 3e-09 | |
| d1rfsa_ | 127 | b.33.1.1 (A:) ISP subunit from chloroplast cytochr | 1e-08 | |
| d1vm9a_ | 109 | b.33.1.1 (A:) Toluene-4-monooxygenase system prote | 2e-07 | |
| d1g8kb_ | 133 | b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc | 2e-06 | |
| d2e74d1 | 134 | b.33.1.1 (D:46-179) ISP subunit from the cytochrom | 2e-06 | |
| d2b1xa1 | 162 | b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp | 2e-05 | |
| d1nyka_ | 156 | b.33.1.1 (A:) Soluble Rieske protein {Thermus ther | 6e-05 | |
| d2bmoa1 | 150 | b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha | 8e-05 | |
| d1z01a2 | 279 | d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8 | 5e-04 |
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Score = 84.0 bits (207), Expect = 7e-20
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 11/141 (7%)
Query: 68 DPPERELETNSQ-----EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNEN 122
D +T SQ + + + + WYP + +L++ ++ G+ +V+
Sbjct: 3 DARANNAKTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRRV--NG 60
Query: 123 EWRVFADACPHRLAPLSEGRID-QWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFE 181
+ D C HR LSE + C YHG+ F P
Sbjct: 61 KVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKL---VTIVANPEDKLIG 117
Query: 182 KACAAVYPSTVQHDIVWFWPN 202
YP + +++ +
Sbjct: 118 TTGVTTYPVHEVNGMIFVFVR 138
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 | Back information, alignment and structure |
|---|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 | Back information, alignment and structure |
|---|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154 | Back information, alignment and structure |
|---|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 | Back information, alignment and structure |
|---|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 | Back information, alignment and structure |
|---|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 | Back information, alignment and structure |
|---|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134 | Back information, alignment and structure |
|---|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162 | Back information, alignment and structure |
|---|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150 | Back information, alignment and structure |
|---|
| >d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 279 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| d1ulia1 | 154 | Biphenyl dioxygenase large subunit BphA1, N-termin | 99.97 | |
| d2b1xa1 | 162 | Naphthalene 1,2-dioxygenase alpha subunit, N-domai | 99.97 | |
| d2de6a1 | 142 | Terminal oxygenase component of carbazole CarAa {J | 99.97 | |
| d2bmoa1 | 150 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 99.97 | |
| d1z01a1 | 148 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.96 | |
| d2jzaa1 | 122 | NADH-nitrite reductase small subunit NirD {Erwinia | 99.92 | |
| d2jo6a1 | 108 | NADH-nitrite reductase small subunit NirD {Escheri | 99.91 | |
| d1vm9a_ | 109 | Toluene-4-monooxygenase system protein C, TmoC {Ps | 99.89 | |
| d1fqta_ | 109 | Rieske-type ferredoxin associated with biphenyl di | 99.89 | |
| d3c0da1 | 108 | NADH-nitrite reductase small subunit NirD {Vibrio | 99.87 | |
| d1rfsa_ | 127 | ISP subunit from chloroplast cytochrome bf complex | 99.72 | |
| d2e74d1 | 134 | ISP subunit from the cytochrome b6f complex, solub | 99.65 | |
| d1g8kb_ | 133 | Arsenite oxidase Rieske subunit {Alcaligenes faeca | 99.62 | |
| d1z01a2 | 279 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.43 | |
| d1nyka_ | 156 | Soluble Rieske protein {Thermus thermophilus [TaxI | 99.4 | |
| d3cx5e1 | 129 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.9 | |
| d1riea_ | 127 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.77 | |
| d1jm1a_ | 202 | Rieske protein II (SoxF) {Archaeon Sulfolobus acid | 98.48 | |
| d2de6a2 | 242 | Terminal oxygenase component of carbazole CarAa {J | 97.76 | |
| d2bmoa2 | 287 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 97.7 | |
| d2b1xa2 | 279 | Naphthalene 1,2-dioxygenase alpha subunit, C-domai | 97.45 | |
| d1ulia2 | 281 | Biphenyl dioxygenase large subunit BphA1, C-termin | 96.9 | |
| d1wqla2 | 279 | Large subunit of cumene dioxygenase cumA1 {Pseudom | 96.2 |
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]
Probab=99.97 E-value=4.4e-32 Score=248.72 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=113.9
Q ss_pred ccccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEe
Q 009277 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (538)
Q Consensus 73 ~~~~~~~e~~f~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~lvv~r~~~~G~~~a~~d~CpHRga~Ls~G~v~~~~~l~C 151 (538)
.++-.+.|.+.+|.+.||+|++++||+ +|++++++++|++|+|+|+++ |+++||.|+|||||++|++|..+..+.|+|
T Consensus 24 ~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~-g~i~af~N~C~HRG~~L~~~~~g~~~~l~C 102 (154)
T d1ulia1 24 DEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKN-GEIRVFLNQCRHRGMRICRADGGNAKSFTC 102 (154)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSCEEC
T ss_pred CHHHHHHHHHHHhccCCEEEEEhhhCCCCcceeeeecCCcceeEEeecc-cceeeeecccccCCceeeecCCCccceEEe
Confidence 456778899999999999999999998 699999999999999999987 899999999999999999877654578999
Q ss_pred ccCCcEEeCCCCcccCCCCCCCCCCCCCccccccceeeEEEEcCeEEEccCCC
Q 009277 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (538)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~~pv~~~~G~IwV~~~~~ 204 (538)
|||||+||.+|+|+.+|......+ ....++.+|..++|.+++|+||||+++|
T Consensus 103 pYHgW~f~~~G~~~~iP~~~~~~~-~~~~~~~~L~~~~v~~~~G~Ifv~~d~D 154 (154)
T d1ulia1 103 SYHGWAYDTGGNLVSVPFEEQAFP-GLRKEDWGPLQARVETYKGLIFANWDAD 154 (154)
T ss_dssp TTTCCEECTTCCEEECTTHHHHCT-TCCGGGSSCCEEEEEEETTEEEEECCTT
T ss_pred eeceeEEecCCccccCCcccccCC-CCChHHCCCeEEeEEEECCEEEEEeCCC
Confidence 999999999999999997543221 2345667899999999999999999753
|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
|---|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
|---|
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} | Back information, alignment and structure |
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| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} | Back information, alignment and structure |
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| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
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| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
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| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} | Back information, alignment and structure |
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| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
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| >d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
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| >d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
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| >d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
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| >d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
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| >d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
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| >d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
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