Citrus Sinensis ID: 009300

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHcccHcccccHHcccccccccccHHHHHHHHHHHccHHHHHcccccccccccccccccccccEEEEccccccccHccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHEcc
Coil and Loop (DISEMBL)
maydddpyrdedeeplmdyddirsdpeqspehqqhqndnvlddfddddvgdggvsparersqtpvynnneksskprKRLVKkgakesgstpslideredeyddegedniigdDFEREIEERKRKkwgkeggkdhntkkrlksggdkkfsssggkssgfkssragsirdnDKMLNEMWNavaptgdseddqegvrtldddnfiddsgvdpsdrygsdseprfahdapqaeegdeDEEIKELFKMGKkrkkneksPAEIALLVENVMAELEVTAEEDAELnrqgkpainkLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNwleplpdgslpniNIRAAILKILTefpidleqFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVdkwsrpifnkstrfedmktveddrvpfrrpsakkpaskaaamesrdgdfddLVISRerksgqsssgqhasrsdsssrqhasrpeatpldfvvrpqskidpeEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSvegrgmlkyl
Flexible Loop (DISEMBL)
maydddpyrdedeeplMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGvsparersqtpvynnneksskprkrlvkkgakesgstpslideredeyddegedniigddfereieerkrkkwgkeggkdhntkkrlksggdkkfsssggkssgfkssragsirdNDKMLNEMWNAVaptgdseddqegvrtldddnfiddsgvdpsdrygsdseprfahdapqaeegdedeEIKELFkmgkkrkknekspAEIALLVENVMAELEVTAEEdaelnrqgkpainkLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQlkksglgkvimflsksdeettsnrklakdlvdkwsrpifnkstrfedmktveddrvpfrrpsakkpaskaaamesrdgdfdDLVISRerksgqsssgqhasrsdsssrqhasrpeatpldfvvrpqskidpeevRARAKQVMQDQRRMKMNKklqqlkaprkkqlqatklsvegrgmlkyl
Low Complexity Region (SEG)
MAydddpyrdedeepLMDYDDIRSDPEQSPEHQQHQNdnvlddfddddvgdggvSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLideredeyddegedniigddfereieerkrkkwgkeggkDHNTKKRLksggdkkfsssggkssgfkssRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAeegdedeeikeLFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRpsakkpaskaaaMESRDGDFDDLVISRERKsgqsssgqhasrsdsssrqhasrPEATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************************************************************************************************************IALLVENVMAEL******************NKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFL********************W***************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****DP*************************************************************************************************************************************************************************************************************************************************************VENVMAELEVTAEEDA*******P*INKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKS*********************************************************************SRPEATPLDFVVRP*************************************************RGMLK**
Disordered Region (DISEMBL)
MAYDDDPYRDEDEEPLMDYDDIRS************NDNVLDDFDDDDVGDGGVSPARERSQTPVY**************************************GEDNIIGDDFEREIEERKR****************************************GSIRDNDKMLNEMWNAVAP**********VRTLDDDNFIDDSGVDPSDRYGSDSEPR***************EIKELFKMG*********PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKS********KLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPF******************DGDFDDLVISRE**************************EATPLDFVVRPQSKIDPE**********************************ATKLSVEGRGMLKYL
Disordered Region (DISPRO)
*****DPYRDEDEEPLMDYDDIR********************************************************************************************************************************************************************************************************************EIKELFK*******NEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDR***************************************************************LDFVVRPQSKID**************QRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLxxxxxxxxxxxxxxxxxxxxxGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	538	2.2.26 [Sep-21-2011]
Q8C1D8	766	Protein IWS1 homolog OS=M	yes	no	0.479	0.336	0.318	4e-31
Q96ST2	819	Protein IWS1 homolog OS=H	yes	no	0.511	0.335	0.314	9e-31
Q3SWT4	764	Protein IWS1 homolog OS=R	yes	no	0.468	0.329	0.316	2e-30
Q6DE96	836	Protein IWS1 homolog A OS	N/A	no	0.472	0.303	0.321	2e-28
Q505H7	909	Protein IWS1 homolog OS=X	yes	no	0.479	0.283	0.315	3e-28
Q6CGB2	414	Transcription factor IWS1	yes	no	0.444	0.577	0.291	5e-24
Q4P7X6	380	Transcription factor IWS1	N/A	no	0.306	0.434	0.375	4e-23
O42964	428	Transcription factor iws1	yes	no	0.434	0.546	0.283	8e-23
Q61MR2	497	IWS1-like protein OS=Caen	N/A	no	0.485	0.525	0.257	6e-20
Q4IJ11	428	Transcription factor IWS1	yes	no	0.394	0.495	0.289	1e-19

>sp|Q8C1D8|IWS1_MOUSE Protein IWS1 homolog OS=Mus musculus GN=Iws1 PE=1 SV=1

 Score =  136 bits (342), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 146/276 (52%), Gaps = 18/276 (6%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 506 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 565

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P        +E LK SG+G+ +M+L K  +E+ S
Sbjct: 566 WLSPLPDRSLPALKIREELLKILQELP-----SVSQETLKHSGIGRAVMYLYKHPKESRS 620

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRR-PSAKKPASKAAAMESRDGDFD 438
           N+ +A  L+++WSRPIF  ++ ++ M   E ++    + P  ++ +S       RD    
Sbjct: 621 NKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRLSSTGGQTPRRDL--- 677

Query: 439 DLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARAKQV 498
           + V++ E K+ +       +R        A  P  +  D+VVRP+  ++ E  R +A   
Sbjct: 678 EKVLTGEEKALRPGDPGFCAR--------ARVPMPSNKDYVVRPKWNVEMESSRFQASSK 729

Query: 499 MQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGM 534
               R  K  +K   ++  + +   A K+S+EG  M
Sbjct: 730 KGISRLDKQMRKFTDIRK-KSRSAHAVKISIEGNKM 764

Mus musculus (taxid: 10090)

>sp|Q96ST2|IWS1_HUMAN Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2

 Score =  135 bits (340), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 21/296 (7%)

Query: 243 MGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
           M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L
Sbjct: 539 MSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHL 598

Query: 300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
            K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P        +E LK
Sbjct: 599 KKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP-----SVSQETLK 653

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRR-P 418
            SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M   E ++    + P
Sbjct: 654 HSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMP 713

Query: 419 SAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDF 478
             ++  S       RD    + V++ E K+ +       +R        A  P  +  D+
Sbjct: 714 QRRRMNSTGGQTPRRDL---EKVLTGEEKALRPGDPGFCAR--------ARVPMPSNKDY 762

Query: 479 VVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGM 534
           VVRP+  ++ E  R +A       R  K  +K   ++  + +   A K+S+EG  M
Sbjct: 763 VVRPKWNVEMESSRFQATSKKGISRLDKQMRKFTDIRK-KSRSAHAVKISIEGNKM 817

Homo sapiens (taxid: 9606)

>sp|Q3SWT4|IWS1_RAT Protein IWS1 homolog OS=Rattus norvegicus GN=Iws1 PE=2 SV=1

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 147/281 (52%), Gaps = 29/281 (10%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 505 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 564

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P        +E LK SG+G+ +M+L K  +E+ S
Sbjct: 565 WLSPLPDRSLPALKIREELLKILQELP-----SVSQETLKHSGIGRAVMYLYKHPKESRS 619

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRR-PSAKKPASKAAAMESRDGDFD 438
           N+ +A  L+++WSRPIF  ++ ++ M   E ++    + P  ++ +S       RD    
Sbjct: 620 NKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRMSSTGGQTPRRDL--- 676

Query: 439 DLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARA--- 495
           + V++ E K+ +       +R        A  P  +  D+VVRP+  ++ E  R      
Sbjct: 677 EKVLTGEEKALRPGDPGFCAR--------ARVPMPSNKDYVVRPKWNVEMESSRPGILKK 728

Query: 496 --KQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGM 534
              ++ + +RR    K+L Q+        +A K S+EG  M
Sbjct: 729 GLSRLEKHKRRFAEQKRLSQMH-------RAVKFSIEGNRM 762

Rattus norvegicus (taxid: 10116)

>sp|Q6DE96|IWS1A_XENLA Protein IWS1 homolog A OS=Xenopus laevis GN=iws1-a PE=2 SV=1

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 150/280 (53%), Gaps = 26/280 (9%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 576 VVNAMIMKMTEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 635

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P  + Q    E LK SG+G+ IM+L K  +E+  
Sbjct: 636 WLTPLPDRSLPALKIREELLKILQELP-SVSQ----ETLKHSGIGRAIMYLYKHPKESRP 690

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDMKTVE-DDRVPFRRPSAKKPASKAAAMESRDGDFD 438
           N+ +A  L+++WSRPIF  ++ ++ M   E + R   + P  ++ +S       RD    
Sbjct: 691 NKDIAGKLINEWSRPIFGLTSNYKGMTREEREQRDIEQMPQRRRMSSSGGQTPRRDL--- 747

Query: 439 DLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPE--EVRARAK 496
           D V++ E K+ +       +R        A  P  +  D+VVRP+  ++ E  + +  AK
Sbjct: 748 DKVLTGEEKALRPGEPGFCAR--------ARVPLPSNKDYVVRPKWNVEMETSQYQGSAK 799

Query: 497 QVMQDQRRMKMNKKLQQLKAPRKKQL--QATKLSVEGRGM 534
           + +      +++K++++    +KK     A K+S+EG  M
Sbjct: 800 KGVS-----RIDKQMRKFVDIKKKNRFGHAVKISIEGNKM 834

Xenopus laevis (taxid: 8355)

>sp|Q505H7|IWS1_XENTR Protein IWS1 homolog OS=Xenopus tropicalis GN=iws1 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 18/276 (6%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 649 VVNAMIMKMNEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 708

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P  + Q    E LK SG+G+ +M+L K  +E+  
Sbjct: 709 WLTPLPDRSLPALKIREELLKILQELP-SVSQ----ETLKHSGIGRAVMYLYKHPKESRP 763

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRR-PSAKKPASKAAAMESRDGDFD 438
           N+ +A  L+++WSRPIF  ++ ++ M   E ++    + P  ++ +S       RD    
Sbjct: 764 NKDIAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRMSSSGGQTPRRDL--- 820

Query: 439 DLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARAKQV 498
           + V++ E K+ +       +R        A  P  +  D+VVRP+  ++ E  R +    
Sbjct: 821 EKVLTGEEKALRPGDPGFCAR--------ARVPLPSNKDYVVRPKWNVEMESARYQGSSK 872

Query: 499 MQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGM 534
               R  K  +K   +K  + +   A K+S+EG  M
Sbjct: 873 KGVSRLDKQMRKFVDIKK-KNRFGHAVKISIEGNKM 907

Xenopus tropicalis (taxid: 8364)

>sp|Q6CGB2|IWS1_YARLI Transcription factor IWS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IWS1 PE=3 SV=1

 Score =  113 bits (282), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 132/274 (48%), Gaps = 35/274 (12%)

Query: 261 VENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNW 320
           + N+  ++   A  DAE NR+G+PA +KL+ L  + +VL K  L    LD+ +L  ++ W
Sbjct: 174 ISNLREKMRNAAIADAESNREGQPATHKLQLLPEVKDVLQKHHLADSILDNNLLEAVRIW 233

Query: 321 LEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSN 380
           LEPLPD SLP+ +I+  +   L   PI      +   L++SGLGKV+ F  KS +     
Sbjct: 234 LEPLPDASLPSYSIQEELFDALVRLPI------KSIHLRESGLGKVVTFYRKSKQPQLRI 287

Query: 381 RKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGDFDDL 440
           +++A  LV  W+RPI  +S  + +                     K  +  S D    ++
Sbjct: 288 KRIADKLVADWTRPIMGRSDNYRE---------------------KVVSTRSFDPSTQEI 326

Query: 441 VISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARAKQVMQ 500
            ++   K  Q+      +   +  R+ A  P A P ++ V P+S+I P+  R  +   M 
Sbjct: 327 ALAVAAKRAQTLKDGTLAEKQAERRRRAHIPSAQPANYRVAPKSEIIPQN-RGGSTNDMT 385

Query: 501 DQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGM 534
            +R   +  KL   K  +KK    + +S+EGRG+
Sbjct: 386 FKR---LKGKLGVTKTGKKK----SGVSIEGRGL 412

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q4P7X6|IWS1_USTMA Transcription factor IWS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=IWS1 PE=3 SV=1

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 11/176 (6%)

Query: 234 DEEIKELFKMGKKRKKNEKSPAE-IALLVENVMA----ELEVTAEEDAELNRQGKPAINK 288
           D  I E  + GKK+   +++  + + LL +  +A    E+   A++D E NR  KPA NK
Sbjct: 165 DRMIDEALRAGKKKAPRKRAGEDDLDLLADEEVAALRREMVTAADDDEEANRLKKPATNK 224

Query: 289 LKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPID 348
           LK L  +   L K  LQQ  LD+ +L  +K WLEPLPD SLP +NI+    +IL    ID
Sbjct: 225 LKLLPKVVATLQKNHLQQSILDNNLLEGVKRWLEPLPDKSLPALNIQHQFFQILERMTID 284

Query: 349 LEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFED 404
                    LK SGLGKV++F S         ++ A+ L++ WSRP+  +S+ + D
Sbjct: 285 T------ISLKMSGLGKVVVFYSMCSRVEPKIKRSAEHLIEVWSRPVLKRSSSYRD 334

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|O42964|IWS1_SCHPO Transcription factor iws1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iws1 PE=3 SV=1

 Score =  108 bits (271), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 34/268 (12%)

Query: 267 ELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPD 326
           ++ + A  DAELN +  PA  KLK L L+  VL K  L    LD+ VL  ++ WLEPLPD
Sbjct: 195 QMRLAALRDAELNSEQLPATEKLKMLPLVDAVLRKTHLYDTILDNNVLDSVRMWLEPLPD 254

Query: 327 GSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKD 386
            SLP +NI+ +++ ILT+ PI      + E L++S +G++++F + S +     +++A +
Sbjct: 255 RSLPALNIQRSLMDILTKLPI------QTEHLRESKIGRIVLFYTISKKPEPFIKRIADN 308

Query: 387 LVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGDFDDLVISRER 446
           LV +WSRPI  +S  + D                     +A  + S + +       R+ 
Sbjct: 309 LVSEWSRPIIKRSANYRD---------------------RAVGVASFNPEVFQTRRRRDL 347

Query: 447 KSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMK 506
            + +S+    ASR+  +       P +    + V P+ +++P  +    +    D  +++
Sbjct: 348 AAAESNDDAQASRTGRT-----VIPRSIDSRYQVAPRVRLNPTAMTIAGRMKPADTEQVR 402

Query: 507 MNKKLQQLKAPRKKQLQATKLSVEGRGM 534
             K   ++KA R K  + + +S+EGRG+
Sbjct: 403 KLKA--KMKAIRSKSSKKSGVSIEGRGL 428

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q61MR2|IWS1_CAEBR IWS1-like protein OS=Caenorhabditis briggsae GN=iws-1 PE=3 SV=3

 Score = 99.4 bits (246), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 140/284 (49%), Gaps = 23/284 (8%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ +++  A+ D   N + KPA  K+K L  +  ++ +  + +  +++G ++ L  
Sbjct: 226 MVAKLVEKMKHAAKSDRNANVERKPAFQKIKMLPEVKAIMLRAGIVEVLIENGFMSALSE 285

Query: 320 WLEPLPDGSLPNINIRAAILKILTE---FPIDLEQFDRREQLKKSGLGKVIMFLSKSDEE 376
           WL PLPD  LP ++IR  +LK+L     + +D      R  LK+SGLGK +M L K   E
Sbjct: 286 WLAPLPDKCLPALDIRITVLKLLHNPRFWKLD------RSTLKQSGLGKAVMMLYKHPNE 339

Query: 377 TTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGD 436
           T  N+ +A  L+ +W+RPI++  T +  +   E +     R  ++ P  +   + SR+ +
Sbjct: 340 TKENKAIANKLIGEWARPIYHLDTDYSTVSRQERE----ERDYSRMPEKRKKKLHSREEE 395

Query: 437 FDDLVISRERKSGQSSSGQHASRS------DSSSRQHASRPEATPLDFVVRPQSKIDPEE 490
            D+    + R   + + G   ++S      D      A  P+ +  D+V+RP+ ++  E 
Sbjct: 396 PDEDEAPK-RPRIRDAEGLGPTKSLDLKPGDKGYINRARVPKPSTKDYVIRPEWRVSGE- 453

Query: 491 VRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGM 534
              + ++     +R     +  Q +  + K  +  K+S+EGR M
Sbjct: 454 --FKGEKKASGSKRYDQTLRDFQERTRKSKANRLVKVSLEGRNM 495

Caenorhabditis briggsae (taxid: 6238)

>sp|Q4IJ11|IWS1_GIBZE Transcription factor IWS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=IWS1 PE=3 SV=1

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 44/256 (17%)

Query: 244 GKKRKKNEKS--PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSK 301
           G+KRKK ++    AEI  L+ ++   +E   + D +    G+PA++KLK L  +T ++++
Sbjct: 169 GQKRKKKDEIDLEAEIDDLLADLKVRMEGACQSDNQAREAGQPALHKLKLLPEVTAIMNR 228

Query: 302 KQLQQEFL--DHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
             +Q E L  D   L  +K +LEPL DGSLP  NI+  I   L +  I+      +E L 
Sbjct: 229 NNVQHEVLDPDTNFLQHVKFFLEPLNDGSLPAYNIQRDIFNALAKMNIE------KEALL 282

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPS 419
            SG+GKV++F ++S +   S +++A+ L+ +WSRPI N++  +                 
Sbjct: 283 SSGIGKVVVFYTRSKKPEPSIKRIAQRLLGEWSRPILNRTDDY----------------- 325

Query: 420 AKKPASKAAAMESRDGDFDDLVISRERKSGQ--SSSGQHASRSDSSSRQ---------HA 468
                 K   +E+RD D+D   +++ +K+    S S + A  +  + R+         ++
Sbjct: 326 ------KKRQIETRDYDYDAAKMAQRQKTNSQFSLSQRPAPNTKEAERERLLAPSRGNNS 379

Query: 469 SRPEATPLDFVVRPQS 484
           +R    P  + V PQS
Sbjct: 380 ARMVNLPSSYTVAPQS 395

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
449436856	509	PREDICTED: IWS1-like protein-like [Cucum	0.940	0.994	0.709	0.0
255557639	500	Transcription factor IWS1, putative [Ric	0.920	0.99	0.727	0.0
356531459	508	PREDICTED: protein IWS1 homolog [Glycine	0.931	0.986	0.677	1e-174
357484843	496	IWS1-like protein [Medicago truncatula]	0.918	0.995	0.655	1e-172
147865531	508	hypothetical protein VITISV_006539 [Viti	0.940	0.996	0.679	1e-170
356496118	508	PREDICTED: protein IWS1 homolog isoform	0.942	0.998	0.662	1e-170
359479803	507	PREDICTED: protein IWS1 homolog [Vitis v	0.938	0.996	0.687	1e-169
79356327	502	Transcription elongation factor (TFIIS)	0.925	0.992	0.632	1e-169
297851642	503	hypothetical protein ARALYDRAFT_473395 [	0.916	0.980	0.622	1e-166
224071401	353	predicted protein [Populus trichocarpa]	0.654	0.997	0.833	1e-164

>gi|449436856|ref|XP_004136208.1| PREDICTED: IWS1-like protein-like [Cucumis sativus] gi|449508046|ref|XP_004163201.1| PREDICTED: IWS1-like protein-like [Cucumis sativus]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/541 (70%), Positives = 431/541 (79%), Gaps = 35/541 (6%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+DDPYRDED EPLMD+D I+SD EQSPE   +  D +LD+    D+GD      R+R
Sbjct: 1   MGYEDDPYRDEDGEPLMDFDHIQSDGEQSPEP--YNPDELLDE----DIGDWA---GRQR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFERE-IE 119
           SQTPVY+  E  ++PRKRLVKK     GS  S +D+  D+       +   D F RE  E
Sbjct: 52  SQTPVYDAEEPQARPRKRLVKKSLAGKGSVASNLDDDYDD-----ARDFTPDQFVREGSE 106

Query: 120 ERKRKKWGKEGGKDHNTKKRLKSGGDKKFSS-SGGKSSGFKSSRAG-SIRDNDKMLNEMW 177
           ERKRKK    G K+    KR K  GDKK  S SGGKS   K + +G  ++D D  + EMW
Sbjct: 107 ERKRKKGISSGKKE----KRFK--GDKKLGSGSGGKSRLPKKAFSGKGMKDQDGDVKEMW 160

Query: 178 NAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEI 237
             +A  G S+DDQEG+RT+DDDNFIDDSGVDP+DRYGSD EPR    AP+AEEG+ED+EI
Sbjct: 161 ETIA-GGGSDDDQEGIRTVDDDNFIDDSGVDPADRYGSDDEPRSPRYAPEAEEGEEDDEI 219

Query: 238 KELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTE 297
            ELFK+GKK+KKNEKSPAEIALLVENVMAELEVTAEEDA+LNRQGKPA+NKLKKL LLT+
Sbjct: 220 NELFKVGKKKKKNEKSPAEIALLVENVMAELEVTAEEDADLNRQGKPAVNKLKKLPLLTD 279

Query: 298 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQ 357
           VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIR AILKILT+FPIDLEQ+DRREQ
Sbjct: 280 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIREAILKILTDFPIDLEQYDRREQ 339

Query: 358 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRR 417
           LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVD+WSRPIFNKSTRFEDM+ VED+RVPFRR
Sbjct: 340 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDQWSRPIFNKSTRFEDMRNVEDERVPFRR 399

Query: 418 PSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLD 477
           P AKK  +KAA MESRDGD D    S+ RKSGQ           SSSRQHASRPEATPLD
Sbjct: 400 PLAKKSGNKAAGMESRDGDLDLDEFSQGRKSGQ-----------SSSRQHASRPEATPLD 448

Query: 478 FVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKY 537
           FV+RPQSKIDP+E+RARAKQ +QDQRRMKMNKKLQQLKAP+KKQLQATKLSVEGRGM+KY
Sbjct: 449 FVIRPQSKIDPDEIRARAKQAVQDQRRMKMNKKLQQLKAPKKKQLQATKLSVEGRGMVKY 508

Query: 538 L 538
           L
Sbjct: 509 L 509

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557639|ref|XP_002519849.1| Transcription factor IWS1, putative [Ricinus communis] gi|223540895|gb|EEF42453.1| Transcription factor IWS1, putative [Ricinus communis]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/543 (72%), Positives = 433/543 (79%), Gaps = 48/543 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           MAY+DDPYRDED EPLMDYDDI     QSPE QQ +      D  +DDV DG     RER
Sbjct: 1   MAYEDDPYRDEDGEPLMDYDDI-----QSPEPQQQE------DLLEDDV-DGWGEQERER 48

Query: 61  SQTPVYNNNEKSSKPRKRLVKK-----GAKESGSTPSLIDEREDEYDDEGEDNIIGDDFE 115
           SQTPVYNNN+K  KPRKRLVKK     G K     P L+DE  DE DDEG     G    
Sbjct: 49  SQTPVYNNNDKVEKPRKRLVKKSNSGIGEKGHFVVPELVDE--DEVDDEG----FG---- 98

Query: 116 REIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNE 175
                RKRK +GK+    H   K+  S G+KK+SSSGGK       +    R  D  + E
Sbjct: 99  -----RKRKTFGKDF---HEKSKKKFSKGEKKYSSSGGKGGSSSKLKGKMARKEDGEVKE 150

Query: 176 MWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDE 235
           MW+ +A  GDSEDD +GVRT+DDDNFIDDSGVDP+DRYGSD+EPR   DAPQAEEG+EDE
Sbjct: 151 MWDTIA-GGDSEDDHDGVRTMDDDNFIDDSGVDPADRYGSDNEPRSPTDAPQAEEGEEDE 209

Query: 236 EIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLL 295
           EIKELFKMGKK+KKNEKSPAEIALLVENVMAELEVTAEEDAELNR+GKPAI KLKKL LL
Sbjct: 210 EIKELFKMGKKKKKNEKSPAEIALLVENVMAELEVTAEEDAELNRRGKPAITKLKKLPLL 269

Query: 296 TEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRR 355
           TEVLSKKQLQQEF+DHGVLTLLKNWLEPLPDGSLPNINIRAAILKILT+FPIDLEQ+DRR
Sbjct: 270 TEVLSKKQLQQEFIDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTDFPIDLEQYDRR 329

Query: 356 EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPF 415
           EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDM+ ++DDR  F
Sbjct: 330 EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNIDDDRA-F 388

Query: 416 RRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATP 475
           RRP+ ++P + +A MESRDGD  DL ISRER+SGQSS+ Q          QHASRPEATP
Sbjct: 389 RRPTVRRPVNNSAGMESRDGDL-DLDISRERRSGQSSARQ----------QHASRPEATP 437

Query: 476 LDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGML 535
           LDF+VRPQSKIDPEEVRARAKQV+QDQRR+KMNKKLQQLKAP+KKQLQATKLSVEGRGML
Sbjct: 438 LDFLVRPQSKIDPEEVRARAKQVVQDQRRLKMNKKLQQLKAPKKKQLQATKLSVEGRGML 497

Query: 536 KYL 538
           KYL
Sbjct: 498 KYL 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531459|ref|XP_003534295.1| PREDICTED: protein IWS1 homolog [Glycine max]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 369/545 (67%), Positives = 421/545 (77%), Gaps = 44/545 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDD-DVGDGGVSPARE 59
           M Y+D+PYRDED EPLMDYDD++SD E SPE + HQ    LDDF++D D   G     R+
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDVQSDREPSPEPR-HQ----LDDFEEDVDEWRG-----RD 50

Query: 60  RSQTPVYNNNEKSSKPRKRLVKKG-AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           RSQTPVY+ +   SKPRKRL+KK  A +    P L DE  + Y  EG    + D+ +   
Sbjct: 51  RSQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEG----VFDEGDAGR 106

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIR-----DNDKML 173
           + +K K+     G     +KR+K  G+K F S G KS     S           D+D  +
Sbjct: 107 KRKKGKE-----GGSGKKEKRMK--GEKSFGSGGAKSGSKFGSGKKGFGGKAGKDHDGEV 159

Query: 174 NEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDE 233
            EMW+ +A  GDSEDDQEG+R +DDDNFIDD+GV+P+  YGSD EPR   DAPQAEEG+E
Sbjct: 160 KEMWDTIA-GGDSEDDQEGLRNVDDDNFIDDTGVEPA-YYGSD-EPRSPGDAPQAEEGEE 216

Query: 234 DEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLS 293
           DEEIK+LFK+GKK+KKNE+SPAEIA LVE VMAELEVTAEEDAELNRQGKPA+NKLKKL+
Sbjct: 217 DEEIKDLFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAVNKLKKLN 276

Query: 294 LLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFD 353
           LLTEVLSKKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR  +LKIL +FPIDLEQ+D
Sbjct: 277 LLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEVLKILNDFPIDLEQYD 336

Query: 354 RREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRV 413
           RREQLKKSGLGKVIMFLSKSDEE   NRKLAK+LVDKWSRPIFNKSTRFEDM+ VEDDRV
Sbjct: 337 RREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRV 396

Query: 414 PFRRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEA 473
           P+RRPS KKPA+KAA MESRD D  DL +S+ R SGQ           SSSRQHASRPEA
Sbjct: 397 PYRRPSVKKPANKAAGMESRDSDL-DLELSQPR-SGQ-----------SSSRQHASRPEA 443

Query: 474 TPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRG 533
           TPLDFVVRPQSKIDPEE+RARAKQ  QDQ+RMKMNKKLQQL+AP+KKQLQATKLSVEGRG
Sbjct: 444 TPLDFVVRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRG 503

Query: 534 MLKYL 538
           M+KYL
Sbjct: 504 MIKYL 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484843|ref|XP_003612709.1| IWS1-like protein [Medicago truncatula] gi|355514044|gb|AES95667.1| IWS1-like protein [Medicago truncatula]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/540 (65%), Positives = 408/540 (75%), Gaps = 46/540 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+D+PYRDED EPLMDYDD++SD E SPE QQ      LDDF+++DV +      R R
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDVQSDGEGSPEPQQ------LDDFEEEDVDNFH---DRAR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKG--AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY N+   SKPRKRL+KK    K+S + PS +++  +E D+  +     D    + 
Sbjct: 52  SQTPVYENDSSKSKPRKRLIKKSDTGKQSMALPSELEDELEEEDEGRKRKKGKDGGSGKK 111

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
           E+R  K      GK  +     K G        GGKS    + R G +       NEMW+
Sbjct: 112 EKR-LKGGSSSSGKGGSRFGGSKRG-------VGGKSG---NDREGEV-------NEMWD 153

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
           A+A  G+SEDD EG R +DDDNFIDD+GV+P+  YG D EPR   DAPQAEEG+ED+EIK
Sbjct: 154 ALA--GNSEDDNEGARNMDDDNFIDDTGVEPA-LYGYD-EPRSPGDAPQAEEGEEDDEIK 209

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNE+SPAEIALLVENVMAELEVTAEEDAELNRQ KPA+NKLKKL LL EV
Sbjct: 210 DLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQHKPAVNKLKKLPLLIEV 269

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQ EFLDHGVL LLK+WLEPLPDGSLPNINIR AILKIL + PIDLE +DRREQL
Sbjct: 270 LSKKQLQLEFLDHGVLNLLKSWLEPLPDGSLPNINIRTAILKILNDLPIDLEHYDRREQL 329

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRP 418
           K+SGLGKVIMFLS+SDEE   NR+LAKDLVDKWSRPIFNKSTRFEDM+  EDDRVP+RRP
Sbjct: 330 KRSGLGKVIMFLSRSDEEINVNRRLAKDLVDKWSRPIFNKSTRFEDMRNTEDDRVPYRRP 389

Query: 419 SAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDF 478
           S KKPA+KAA M+SRDGD  DL +S+ R SG+           SSSRQHASRPEATPLDF
Sbjct: 390 SVKKPAAKAAGMQSRDGDL-DLDLSQPR-SGE-----------SSSRQHASRPEATPLDF 436

Query: 479 VVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL 538
           V+RPQSKIDP+E+RARAKQ  QDQ RMKMNKKLQQL+AP+KKQLQATKLSVEGRGM KY 
Sbjct: 437 VIRPQSKIDPDEIRARAKQATQDQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMAKYF 496

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865531|emb|CAN83660.1| hypothetical protein VITISV_006539 [Vitis vinifera]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 367/540 (67%), Positives = 413/540 (76%), Gaps = 34/540 (6%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y++DPYRDED EPLMD+D+++SD E   +    Q+D            +      RER
Sbjct: 1   MGYENDPYRDEDGEPLMDFDEVQSDREVEDQGHLLQDDIP--------DXNDDDWRRRER 52

Query: 61  SQTPVYNNNE--KSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           S TPVY ++     SKPRKRLVKK AK S      IDE +     +G  ++  DDF R  
Sbjct: 53  SPTPVYGDDSGFSKSKPRKRLVKKSAKXSPLHYPGIDEDDSPAAFQG--DVDEDDFLR-- 108

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
              KRK    + G     KK      DK F S G K   F++     I+D D  + E+W+
Sbjct: 109 ---KRKDI--DSGSKRKEKKLRLEKKDKGFKS-GLKKGMFEA--VPRIQDGDAEVKELWD 160

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
            +A  GDSEDD EG RT+DDDNFIDD+GVDP+DRYGSD E R   DAPQAEEG+EDEEIK
Sbjct: 161 TIA-GGDSEDDHEGPRTVDDDNFIDDTGVDPADRYGSDREARSPGDAPQAEEGEEDEEIK 219

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNEKS AEIALLVENVMAELEVTAEEDAELNRQ KPAINKLKKL LLTEV
Sbjct: 220 QLFKMGKKKKKNEKSAAEIALLVENVMAELEVTAEEDAELNRQSKPAINKLKKLPLLTEV 279

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL+ILT+FPIDLEQ+DRREQL
Sbjct: 280 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRILTDFPIDLEQYDRREQL 339

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRP 418
           KKSGLGKVIMFLSKSDEETT+NRKLAKDLVDKWSRPIFNKSTRFEDM+  +D+RVPFRRP
Sbjct: 340 KKSGLGKVIMFLSKSDEETTANRKLAKDLVDKWSRPIFNKSTRFEDMRNFDDERVPFRRP 399

Query: 419 SAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDF 478
           SAKKP +KAA MESRD D D   + +ERKSGQ           SSSR HASRPEA PLDF
Sbjct: 400 SAKKPMNKAAGMESRDDDLDLADLPQERKSGQ-----------SSSRLHASRPEAMPLDF 448

Query: 479 VVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL 538
           +VRPQSKIDP+E+RARAKQV+QDQRR+KMNKKLQQLKAP+KKQLQATKLSVEGRGM+KYL
Sbjct: 449 IVRPQSKIDPDEIRARAKQVVQDQRRLKMNKKLQQLKAPKKKQLQATKLSVEGRGMVKYL 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496118|ref|XP_003516917.1| PREDICTED: protein IWS1 homolog isoform 1 [Glycine max]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 357/539 (66%), Positives = 412/539 (76%), Gaps = 32/539 (5%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+D+PYRDED EPLMDYDDI+SD E SPE ++  +D            D      R+R
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDIQSDREPSPEPRRQDDDFD---------EDVDEWRGRDR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKG-AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIE 119
           SQTPVY+ +   SKPRKRL+KK  A +    P L DE  + Y  E     + D+ +   +
Sbjct: 52  SQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEA----MFDEADTGRK 107

Query: 120 ERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNA 179
            +K K+ G    +     ++       K  S  G        +AG  +D+D  + EMW+ 
Sbjct: 108 RKKGKEGGSGKKEKRMKGEKSFGSSGGKSGSKFGSGKKGFGGKAG--KDHDGEVKEMWDT 165

Query: 180 VAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKE 239
           +A  GDSEDDQEGVR +DDDNFIDD+GV+P+  YGSD EPR   DAPQAEEG+EDEEIK+
Sbjct: 166 IA-GGDSEDDQEGVRNVDDDNFIDDTGVEPA-YYGSD-EPRSPVDAPQAEEGEEDEEIKD 222

Query: 240 LFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
           LFK+GKK+KKNE+SPAEIA LVE VMAELEVTAEEDAELNRQGKPAINKLKKL+LLTEVL
Sbjct: 223 LFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAINKLKKLNLLTEVL 282

Query: 300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
           SKKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR+ +LKIL +FPIDLEQ+DRREQLK
Sbjct: 283 SKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRSEVLKILNDFPIDLEQYDRREQLK 342

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPS 419
           KSGLGKVIMFLSKSDEE ++NRKLAK+LVDKWSRPIFNKSTRFEDM+ VEDDRVP+RRPS
Sbjct: 343 KSGLGKVIMFLSKSDEEISANRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPYRRPS 402

Query: 420 AKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFV 479
            KKPA+K+A MESRD D  DL +S+ R SGQ           SSSRQHASRPEATPLDFV
Sbjct: 403 VKKPANKSAGMESRDSDL-DLELSQPR-SGQ-----------SSSRQHASRPEATPLDFV 449

Query: 480 VRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL 538
           VRPQSKIDPEE+RARAKQ  QDQ+RMKMNKKLQQL+AP+KKQLQATKLSVEGRGM+KYL
Sbjct: 450 VRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479803|ref|XP_002276883.2| PREDICTED: protein IWS1 homolog [Vitis vinifera] gi|296086725|emb|CBI32360.3| unnamed protein product [Vitis vinifera]

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/540 (68%), Positives = 415/540 (76%), Gaps = 35/540 (6%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y++DPYRDED EPLMD+D+++SD E   E Q H   + + D +DDD      SP    
Sbjct: 1   MGYENDPYRDEDGEPLMDFDEVQSDREV--EDQGHLLQDDIPDDNDDDWRRRERSP---- 54

Query: 61  SQTPVYNNNE--KSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
             TPVY ++     SKPRKRLVKK AKES      IDE +     +G  ++  DDF R  
Sbjct: 55  --TPVYGDDSGFSKSKPRKRLVKKSAKESPLHYPGIDEDDSPAAFQG--DVDEDDFLR-- 108

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
              KRK    + G     KK      DK F S  G   G   SR    +D D  + E+W+
Sbjct: 109 ---KRKDI--DSGSKRKEKKLRLEKKDKGFKS--GLKKGM--SRRSKDQDGDAEVKELWD 159

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
            +A  GDSEDD EG RT+DDDNFIDD+GVDP+DRYGSD E R   DAPQAEEG+EDEEIK
Sbjct: 160 TIA-GGDSEDDHEGPRTVDDDNFIDDTGVDPADRYGSDREARSPGDAPQAEEGEEDEEIK 218

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNEKS AEIALLVENVMAELEVTAEEDAELNRQ KPAINKLKKL LLTEV
Sbjct: 219 QLFKMGKKKKKNEKSAAEIALLVENVMAELEVTAEEDAELNRQSKPAINKLKKLPLLTEV 278

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL+ILT+FPIDLEQ+DRREQL
Sbjct: 279 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRILTDFPIDLEQYDRREQL 338

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRP 418
           KKSGLGKVIMFLSKSDEETT+NRKLAKDLVDKWSRPIFNKSTRFEDM+  +D+RVPFRRP
Sbjct: 339 KKSGLGKVIMFLSKSDEETTANRKLAKDLVDKWSRPIFNKSTRFEDMRNFDDERVPFRRP 398

Query: 419 SAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDF 478
           SAKKP +KAA MESRD D D   + +ERKSGQ           SSSR HASRPEA PLDF
Sbjct: 399 SAKKPMNKAAGMESRDDDLDLADLPQERKSGQ-----------SSSRLHASRPEAMPLDF 447

Query: 479 VVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLKYL 538
           +VRPQSKIDP+E+RARAKQV+QDQRR+KMNKKLQQLKAP+KKQLQATKLSVEGRGM+KYL
Sbjct: 448 IVRPQSKIDPDEIRARAKQVVQDQRRLKMNKKLQQLKAPKKKQLQATKLSVEGRGMVKYL 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79356327|ref|NP_174492.2| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gi|332193317|gb|AEE31438.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 343/542 (63%), Positives = 414/542 (76%), Gaps = 44/542 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D E S E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFGNDREPSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGS--TPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY+N+ K +KPRKRLVKK + E  +   P LIDE   + DD   D  +G       
Sbjct: 52  SQTPVYDND-KVAKPRKRLVKKSSSERVTIDVPELIDE---DVDDAEFDEFMG------- 100

Query: 119 EERKRKKWGKEGG-KDHNTKKRLKSGGDKKFSSSG-GKSSGFKSSRAGSIRDNDKMLNEM 176
                   G+ GG  D++ K   K   +K+ SSSG GK    K    G  +  +  ++EM
Sbjct: 101 --------GRGGGSTDYDDKVGRKRKKEKERSSSGSGKEKRHKFPNRGERKSEE--IDEM 150

Query: 177 WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEE 236
           W ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEEG++++E
Sbjct: 151 WKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDE 208

Query: 237 IKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 296
           +  LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT
Sbjct: 209 VNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 268

Query: 297 EVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRRE 356
           +VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+DRRE
Sbjct: 269 DVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDRRE 328

Query: 357 QLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFR 416
           QLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKWSRPIFNKSTRFEDM+ +++DRVP+R
Sbjct: 329 QLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYR 388

Query: 417 RPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPL 476
           RP  KKP++K A MESRDGDF DL I RERK+G +S    +SR D   RQ   RPEATPL
Sbjct: 389 RPPVKKPSNK-ATMESRDGDF-DLEI-RERKTGLTSG--QSSRGD---RQMTMRPEATPL 440

Query: 477 DFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLK 536
           DF++RPQSKIDP+E+ ARAKQV QDQRR+KMNKKLQQLK  +KK+LQATK+SVEGRGM+K
Sbjct: 441 DFLIRPQSKIDPDEIIARAKQVSQDQRRVKMNKKLQQLKGTKKKRLQATKVSVEGRGMIK 500

Query: 537 YL 538
           YL
Sbjct: 501 YL 502

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851642|ref|XP_002893702.1| hypothetical protein ARALYDRAFT_473395 [Arabidopsis lyrata subsp. lyrata] gi|297339544|gb|EFH69961.1| hypothetical protein ARALYDRAFT_473395 [Arabidopsis lyrata subsp. lyrata]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 341/548 (62%), Positives = 415/548 (75%), Gaps = 55/548 (10%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D EQS E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFENDREQSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGA--KESGSTPSLIDE--REDEYDD--EGEDNIIGDDF 114
           SQTPVY+N+   +K RKRLVKK +  +E+   P LIDE   + E+D+   G     G D+
Sbjct: 52  SQTPVYDND-SVAKLRKRLVKKASSERETIEVPELIDEDVEDAEFDEFMGGRGGGGGTDY 110

Query: 115 EREIEERKRKKWGKEGGKDHNTKKRLKSGGDK----KFSSSGGKSSGFKSSRAGSIRDND 170
           + ++  RKRKK           K+R  SG  K    KF + G + S              
Sbjct: 111 DDKVG-RKRKK----------EKERSSSGSGKEKRHKFPNRGERKS-------------- 145

Query: 171 KMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEE 230
           + ++EMW ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEE
Sbjct: 146 EEIDEMWKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEE 203

Query: 231 GDEDEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLK 290
           G++D+E+  LFKMGKK+KK E++PAEIAL VENVMAELEVTAEEDAELNR+GKPAINKLK
Sbjct: 204 GEDDDEVNNLFKMGKKKKKTERNPAEIALFVENVMAELEVTAEEDAELNRRGKPAINKLK 263

Query: 291 KLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLE 350
           KLSLLT+VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+
Sbjct: 264 KLSLLTDVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLD 323

Query: 351 QFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVED 410
           Q+DRREQLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKWSRPIFNKSTRFEDM+ +++
Sbjct: 324 QYDRREQLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDE 383

Query: 411 DRVPFRRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASR 470
           DRVP+RRP  KKP++K A MESRDGDF DL I RERK+G +S    +SR D   RQ   R
Sbjct: 384 DRVPYRRPPVKKPSNK-ATMESRDGDF-DLEI-RERKTGLTSG--QSSRGD---RQMTMR 435

Query: 471 PEATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVE 530
           PEATPLDF++RPQSKIDP+E+RARAKQ  QDQRR+KMNKKLQQLK  +KK+LQATK+SVE
Sbjct: 436 PEATPLDFLIRPQSKIDPDEIRARAKQGSQDQRRVKMNKKLQQLKGTKKKRLQATKVSVE 495

Query: 531 GRGMLKYL 538
           GRGM+KYL
Sbjct: 496 GRGMIKYL 503

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071401|ref|XP_002303442.1| predicted protein [Populus trichocarpa] gi|222840874|gb|EEE78421.1| predicted protein [Populus trichocarpa]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/366 (83%), Positives = 330/366 (90%), Gaps = 14/366 (3%)

Query: 173 LNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGD 232
           + EMW+ +A  GDSEDDQEG RT+DDDNFIDDSGVDP+  YG D+EPR   DAPQAEEG+
Sbjct: 2   VKEMWDTIA-GGDSEDDQEGARTVDDDNFIDDSGVDPAYGYGIDNEPRSPTDAPQAEEGE 60

Query: 233 EDEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL 292
           EDEEIK++FKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDA+LNRQGKPA+NKLKKL
Sbjct: 61  EDEEIKDMFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDADLNRQGKPAVNKLKKL 120

Query: 293 SLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQF 352
            LLTEVLSKKQLQQEF+DHGVLTLLKNWLEPLPDGSLPNINIRAAILKILT+FPIDLEQ+
Sbjct: 121 PLLTEVLSKKQLQQEFIDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTDFPIDLEQY 180

Query: 353 DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDR 412
           DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDM+ VEDDR
Sbjct: 181 DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNVEDDR 240

Query: 413 VPFRRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPE 472
             FRRP+ ++P++ +A M SRDGD  DL ISRERKS Q           SS RQHASRPE
Sbjct: 241 A-FRRPTVRRPSNNSAGMSSRDGDL-DLDISRERKSSQ-----------SSDRQHASRPE 287

Query: 473 ATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGR 532
           ATPLDF+VRPQSKIDPEEVRARAKQV+QDQRR+KMNKKLQQLK P+KKQLQATKLSVEGR
Sbjct: 288 ATPLDFLVRPQSKIDPEEVRARAKQVVQDQRRLKMNKKLQQLKGPKKKQLQATKLSVEGR 347

Query: 533 GMLKYL 538
           GMLKYL
Sbjct: 348 GMLKYL 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
TAIR|locus:2031715	502	IWS1 [Arabidopsis thaliana (ta	0.661	0.709	0.707	2.2e-137
TAIR|locus:2117199	406	IWS2 [Arabidopsis thaliana (ta	0.317	0.421	0.678	2.2e-69
FB|FBgn0030738	820	CG9915 [Drosophila melanogaste	0.408	0.268	0.336	4.6e-34
UNIPROTKB|Q96ST2	819	IWS1 "Protein IWS1 homolog" [H	0.434	0.285	0.326	1e-32
MGI|MGI:1920723	766	Iws1 "IWS1 homolog (S. cerevis	0.434	0.305	0.322	7.1e-32
UNIPROTKB|E2RCQ3	822	IWS1 "Uncharacterized protein"	0.434	0.284	0.326	7.2e-32
UNIPROTKB|J9PAW4	848	IWS1 "Uncharacterized protein"	0.434	0.275	0.326	8.2e-32
UNIPROTKB|E1BFW2	822	IWS1 "Uncharacterized protein"	0.434	0.284	0.322	1.5e-31
UNIPROTKB|E1BRQ9	767	E1BRQ9 "Uncharacterized protei	0.434	0.305	0.321	3.9e-31
RGD|1304762	764	Iws1 "IWS1 homolog (S. cerevis	0.434	0.306	0.322	3.3e-30

TAIR|locus:2031715 IWS1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1276 (454.2 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
 Identities = 259/366 (70%), Positives = 295/366 (80%)

Query:   173 LNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAXXXX 232
             ++EMW ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQA    
Sbjct:   147 IDEMWKSIAH--NPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGE 204

Query:   233 XXXXXXXLFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL 292
                    LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL
Sbjct:   205 DEDEVNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL 264

Query:   293 SLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQF 352
             SLLT+VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+
Sbjct:   265 SLLTDVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQY 324

Query:   353 DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDR 412
             DRREQLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKWSRPIFNKSTRFEDM+ +++DR
Sbjct:   325 DRREQLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDR 384

Query:   413 VPFRRXXXXXXXXXXXXMESRDGDFDDLVISRERKXXXXXXXXXXXXXXXXXXXXXXXPE 472
             VP+RR            MESRDGDFD L I RERK                       PE
Sbjct:   385 VPYRRPPVKKPSNKAT-MESRDGDFD-LEI-RERKTGLTSGQSSRGDRQMTMR-----PE 436

Query:   473 ATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGR 532
             ATPLDF++RPQSKIDP+E+ ARAKQV QDQRR+KMNKKLQQLK  +KK+LQATK+SVEGR
Sbjct:   437 ATPLDFLIRPQSKIDPDEIIARAKQVSQDQRRVKMNKKLQQLKGTKKKRLQATKVSVEGR 496

Query:   533 GMLKYL 538
             GM+KYL
Sbjct:   497 GMIKYL 502

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=TAS

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2117199 IWS2 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
 Identities = 116/171 (67%), Positives = 137/171 (80%)

Query:   240 LFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
             LF + KK+ K +K+  EI + VE VMA LE+  E+D   NR+GKPAINKL KL LL E L
Sbjct:   126 LFSLRKKKSKCDKTSMEIGMQVEQVMANLEIAVEDDVICNREGKPAINKLMKLPLLNETL 185

Query:   300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
             SKK LQ EFLDHGVL LLKNWLEPLPDGSLPNINIR+A+L IL +F IDL+Q  RREQL 
Sbjct:   186 SKKPLQGEFLDHGVLNLLKNWLEPLPDGSLPNINIRSAVLMILNDFRIDLDQDSRREQLI 245

Query:   360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVED 410
             KSGLGKVIMFLSKSDEETT NR+LA D+++KW R I+NKSTR+++M T E+
Sbjct:   246 KSGLGKVIMFLSKSDEETTPNRRLANDIINKWGRIIYNKSTRYDNMFTQEE 296

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0030738 CG9915 [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
 Identities = 81/241 (33%), Positives = 128/241 (53%)

Query:   185 DSEDD-----QEGVRTLDDDNFID--DSGVDPS---DRY--GSDSEPRFAHDAPQAXXXX 232
             +S+DD     ++ V+  D DN  D  D G+      D+    SD E     + P+     
Sbjct:   469 ESDDDGPKVTKKRVKITDTDNEEDEQDKGIGKEKSQDKITESSDDENTPISNEPENSNFI 528

Query:   233 XXXXXXXLFKMGKKRKKNEKSPAEIAL----LVENVMAELEVTAEEDAELNRQGKPAINK 288
                    + K  +KR +  K   ++      L++ ++  ++  +++D +LN  G+PA  K
Sbjct:   529 SDFDAMLMRKKEEKRVRRRKRDIDLINDNDDLIDQLIVSMKNASDDDRQLNMIGQPATKK 588

Query:   289 LKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPID 348
             +  L  +   L KK LQ  FL+H +L +L +WL PLP+ SLP + IR +ILK+L++FP  
Sbjct:   589 ISMLKQVMSQLIKKHLQLAFLEHNILNVLTDWLAPLPNKSLPCLQIRESILKLLSDFPT- 647

Query:   349 LEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTV 408
             +E    +  LK+SG+GK +M+L K  +ET SNR  A  L+ +W+RPIFN S  F  M   
Sbjct:   648 IE----KGLLKQSGIGKAVMYLYKHPQETKSNRDRAGRLISEWARPIFNVSCNFSAMSKE 703

Query:   409 E 409
             E
Sbjct:   704 E 704

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q96ST2 IWS1 "Protein IWS1 homolog" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 80/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ G     +   SDS+            
Sbjct:   467 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFL 526

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   527 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 586

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   587 KLTLLPAVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 645

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   646 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 701

Query:   408 VEDDR 412
              E ++
Sbjct:   702 EEREQ 706

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1920723 Iws1 "IWS1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 7.1e-32, Sum P(2) = 7.1e-32
 Identities = 79/245 (32%), Positives = 128/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   414 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 473

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   474 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 533

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   534 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 592

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   593 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 648

Query:   408 VEDDR 412
              E ++
Sbjct:   649 EEREQ 653

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2RCQ3 IWS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 7.2e-32, Sum P(2) = 7.2e-32
 Identities = 80/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   470 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 529

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   530 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 589

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   590 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 648

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   649 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 704

Query:   408 VEDDR 412
              E ++
Sbjct:   705 EEREQ 709

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9PAW4 IWS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
 Identities = 80/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   496 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 555

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   556 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 615

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   616 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 674

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   675 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 730

Query:   408 VEDDR 412
              E ++
Sbjct:   731 EEREQ 735

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BFW2 IWS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
 Identities = 79/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   470 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 529

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   530 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 589

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +L+IL E P 
Sbjct:   590 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLRILQELP- 648

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   649 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 704

Query:   408 VEDDR 412
              E ++
Sbjct:   705 EEREQ 709

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BRQ9 E1BRQ9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
 Identities = 79/246 (32%), Positives = 129/246 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYG-SDSEPRFAHDAPQAX 229
             NE  N +A   G+S D++E   T  + ++  ++ G  +  +    SDS+           
Sbjct:   414 NEQENLIADIFGESGDEEEEEFTGFNQEDLEEEKGDAEMKETADESDSDDNVKRGKHMDF 473

Query:   230 XXXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAI 286
                          M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+
Sbjct:   474 MSDFDMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNTQKKPAL 533

Query:   287 NKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFP 346
              KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P
Sbjct:   534 KKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP 593

Query:   347 IDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMK 406
               + Q    E LK SG+G+ +M+L K  +E+  N+ +A  L+++WSRPIF  ++ ++ M 
Sbjct:   594 -SVSQ----ETLKHSGIGRAVMYLYKHPKESRPNKDMAGKLINEWSRPIFGLTSNYKGMT 648

Query:   407 TVEDDR 412
               E ++
Sbjct:   649 REEREQ 654

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

RGD|1304762 Iws1 "IWS1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 79/245 (32%), Positives = 128/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   413 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 472

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   473 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 532

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   533 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 591

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   592 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 647

Query:   408 VEDDR 412
              E ++
Sbjct:   648 EEREQ 652

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	538
COG5139	397	COG5139, COG5139, Uncharacterized conserved protei	8e-28
pfam08711	51	pfam08711, Med26, TFIIS helical bundle-like domain	6e-11

>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function unknown]

 Score =  114 bits (287), Expect = 8e-28
 Identities = 86/320 (26%), Positives = 142/320 (44%), Gaps = 15/320 (4%)

Query: 192 GVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKMGKKRKKNE 251
              +L      D S     +   S    +   +A   E GD  +   +     + R+K +
Sbjct: 89  SDMSLLRKRKNDQSLQPTREPMDSRDSGQDFTEAQSGELGDTGDRQLKAPAASRARRKED 148

Query: 252 KSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDH 311
                +  +   +   ++  A++D   N +G+PA  K+K L  +++VL KK LQ   LD+
Sbjct: 149 LLEQTVDEISLRLKKRMQDAAKKDNANNLEGRPATGKIKNLPEVSDVLMKKALQDTILDN 208

Query: 312 GVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLS 371
            +L  ++ WLEPLPD SLPNI I+ ++L +L   PI        E L +SG+G+++ F +
Sbjct: 209 NILDSVRGWLEPLPDKSLPNIKIQKSLLDVLKTLPI------HTEHLVESGVGRIVYFYT 262

Query: 372 KSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAME 431
            S +E    R+ AK LV +W+RPI   S  + D + ++ +         KK    +A   
Sbjct: 263 ISKKEEKEVRRSAKALVQEWTRPIIKPSGNYRDKRIMQLEFDS--EKLRKKSVMDSAKNR 320

Query: 432 SRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLDFVVRPQSKIDPEEV 491
            +         S E  + + SS Q      ++ R  A+ P  T  D+   P S +     
Sbjct: 321 KKKS-------SGEDPTSRGSSVQTLYEQAAARRNRAAAPAQTTTDYKYAPVSNLSAVPT 373

Query: 492 RARAKQVMQDQRRMKMNKKL 511
            ARA  V       +M K+L
Sbjct: 374 NARAVGVGSTLNNSEMYKRL 393

Length = 397

>gnl|CDD|204037 pfam08711, Med26, TFIIS helical bundle-like domain

 Score = 57.5 bits (140), Expect = 6e-11
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 338 ILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPI 395
           +LK L + PI        E L+++G+GK +  L K + E    +KLAK L+ KW R +
Sbjct: 2   LLKELKKLPIT------EELLRETGIGKAVNKLRKHENE--EVKKLAKKLIKKWKRLV 51

Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	538
KOG1793	417	consensus Uncharacterized conserved protein [Funct	100.0
COG5139	397	Uncharacterized conserved protein [Function unknow	100.0
PF08711	53	Med26: TFIIS helical bundle-like domain; InterPro:	99.06
cd00183	76	TFIIS_I N-terminal domain (domain I) of transcript	98.24
smart00509	75	TFS2N Domain in the N-terminus of transcription el	97.67
TIGR01385	299	TFSII transcription elongation factor S-II. This m	96.6
KOG1105	296	consensus Transcription elongation factor TFIIS/Co	94.75
PLN02976	1713	amine oxidase	93.77

>KOG1793 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-74  Score=593.46  Aligned_cols=339  Identities=42%  Similarity=0.616  Sum_probs=276.0

Q ss_pred             HHHHHHHhhCCCCCCCc---cccccCCCCC-----CcccCCCCCCCCCCCCCCCCCCCCCCCccccCCCchHHHHHHhhc
Q 009300          172 MLNEMWNAVAPTGDSED---DQEGVRTLDD-----DNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKM  243 (538)
Q Consensus       172 ~~~e~~~~i~~~~d~~~---~~e~~~t~~D-----d~fiDd~g~d~~d~~g~d~e~~~~~d~~~aee~e~Dd~i~~~lk~  243 (538)
                      +..++|+.+.  .+-+.   +..+.++..+     -+|+.++|+++-+-++.+.........+.++..|...++.++|+|
T Consensus        65 ~~~~~~~~~~--~~~~r~~Kd~k~~~s~~~~e~~~~d~~~e~~~~~~e~~~~d~~d~~~~r~~~~~~~ed~~e~~~~~k~  142 (417)
T KOG1793|consen   65 PADEDENSNL--EDRKRERKDEKGLDSDGDNEKEHEDESQETGQEFPESQDDDFGDTGGRRPKLKAKLEDILEKKAVRKM  142 (417)
T ss_pred             ccchhhcccc--cchhhhhccccccccccccchhhhHhhhccccccccccccccccccccchhhHhhhhhHHHHHHHHhh
Confidence            6778888776  44443   3344444443     458889998877666555444556666778888999999999998


Q ss_pred             cccccccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhc
Q 009300          244 GKKRKKNEKSPAEIA-LLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLE  322 (538)
Q Consensus       244 ~Kkkkk~~~~~~ei~-~~v~~Li~~M~~AAe~D~ean~~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLd~giL~vl~~WLe  322 (538)
                      +++++++...+++|. .+|..|+.+|+.||+.|+++|.+++|||+||+|||.|+++|.|++||.+|||||||++|+.||+
T Consensus       143 r~kk~~~d~~~~~I~d~~v~~l~~~m~~aa~~D~~~N~e~kPA~~Klk~Lp~v~~vL~k~~L~et~LDngvL~~lk~WLe  222 (417)
T KOG1793|consen  143 RTKKRKNDDGPEEILDDEVSRLMERMEDAAEKDRELNREGKPATQKLKLLPLVVAVLSKKALQETFLDNGVLDSLKEWLE  222 (417)
T ss_pred             hhhhccccCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCchHHHHhccHHHHHHHhhhhHHHHHHhhhHHHHHHHHhc
Confidence            888888999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhcCCccc
Q 009300          323 PLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRF  402 (538)
Q Consensus       323 PLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~~ss~Y  402 (538)
                      ||||||||||+||.+||+||.+|||.+     +|||++||||||||||++||+||++|++||..||++|+||||+++++|
T Consensus       223 PLPD~SLPal~Ir~~ll~iL~dlpi~~-----~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsRpI~~~st~y  297 (417)
T KOG1793|consen  223 PLPDGSLPALNIRKSLLDILNDLPIDK-----REHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSRPIFKLSTNY  297 (417)
T ss_pred             cCCCCCCcchHHHHHHHHHHhcCCcch-----HHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhccccCCCCCc
Confidence            999999999999999999999999976     489999999999999999999999999999999999999999999999


Q ss_pred             hhhhhh--h--hcc-CCCCCCCCCCchhhHhhhhcCCCCchhhhhhhhccCCCCCCccccCCCCcccccccCCCCCCCCC
Q 009300          403 EDMKTV--E--DDR-VPFRRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHASRSDSSSRQHASRPEATPLD  477 (538)
Q Consensus       403 ~d~~~~--e--~er-~~~rr~~~kk~~~k~a~~esr~~dld~~~~~~~~k~G~~~~~~~a~r~~~~~r~rArvP~~s~~D  477 (538)
                      ++|++.  +  ..+ .++|++..+.+..  .+.  +..++. ..+        .++++++    -.+|+||+||+++++|
T Consensus       298 ~dm~~~~e~~de~r~~~~Rr~~~~~~~~--~~~--~~~d~~-~~i--------~~~e~g~----~~gr~Ra~vP~~s~~D  360 (417)
T KOG1793|consen  298 RDMRRMREERDEKRMPQSRRDSAKARKK--SGT--DPRDRG-SEI--------DTDEEGL----TTGRARARVPAPSTKD  360 (417)
T ss_pred             hhhHHHHhhhhhhhhhhhhccccccccc--cCC--Cccccc-ccc--------chhhhcc----ccccccccCCCCCCCc
Confidence            999864  1  122 3344444332221  111  112221 001        0111111    1228999999999999


Q ss_pred             eeeCCCCCCChHHHHHHhhhhchHHHHHHHHHHHHhhhccccccccccccccccCCccc
Q 009300          478 FVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGMLK  536 (538)
Q Consensus       478 YviRPkskvd~~~~rar~Kk~~~derr~Kl~kkL~qlk~~kKK~~RA~~ISIEGR~M~~  536 (538)
                      |+|||+|+|+++  .+++.+.+....+.+++++++|++..|+|+.+|++||||||+|.+
T Consensus       361 y~irP~s~v~~~--~~~~~~~~~~~~r~~~~krk~q~k~kKsk~~~a~kvSiEGr~M~~  417 (417)
T KOG1793|consen  361 YVIRPVSNVDPV--AARAEGVSSGLNREDMYKRKFQRKNKKSKSNQAVKVSIEGRGMGK  417 (417)
T ss_pred             ceecCccccCHH--HHhhhcccccccHHHHHHHHHHHHhhhhccccceeeeeecCCCCC
Confidence            999999999997  455666666777888999999999999999999999999999974

>COG5139 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.3e-49  Score=398.06  Aligned_cols=275  Identities=28%  Similarity=0.436  Sum_probs=216.8

Q ss_pred             CCccccCCCchHHHHHHhhcccccc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhhHHHHHHHh
Q 009300          224 DAPQAEEGDEDEEIKELFKMGKKRK---KNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLS  300 (538)
Q Consensus       224 d~~~aee~e~Dd~i~~~lk~~Kkkk---k~~~~~~ei~~~v~~Li~~M~~AAe~D~ean~~gkPAl~KLkmLpeV~~~L~  300 (538)
                      +.+.|..+|.++.+.++++.++..+   +....+.-+++++..|..+|..||..|++.|..+.|||.||+|||+|.++|.
T Consensus       118 d~t~a~~~El~~~~dr~lK~p~~sr~rr~eD~leq~~de~~lrLk~~M~~aa~~D~~~n~e~~pAt~Kik~lp~V~~VL~  197 (397)
T COG5139         118 DFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEISLRLKKRMQDAAKKDNANNLEGRPATGKIKNLPEVSDVLM  197 (397)
T ss_pred             CCChhhhhhhhhhhhhhhccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhccHHHHHHHH
Confidence            4677888999999999999555433   2233455667889999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHH
Q 009300          301 KKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSN  380 (538)
Q Consensus       301 K~~Lq~~fLd~giL~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eN  380 (538)
                      |.+||.+|||||||+.|+.||+||||+|||||+||+.||.+|..|||.+      |||++||||+||+||+.+|++++++
T Consensus       198 k~~L~dtiLDnniLdsVr~WLEPLPD~SlP~~~IqksL~dvL~~lpI~t------EHL~eSgvGrIV~FYtiskk~e~~v  271 (397)
T COG5139         198 KKALQDTILDNNILDSVRGWLEPLPDKSLPNIKIQKSLLDVLKTLPIHT------EHLVESGVGRIVYFYTISKKEEKEV  271 (397)
T ss_pred             HHHHHHHHhhcchHHHHHhhhccCCCCCCcchHHHHHHHHHHhhCCchH------HHhhhcCCceEEEEEecCCcccHHH
Confidence            9999999999999999999999999999999999999999999999987      5899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcCCccchhhhhhhhc--cCCCCCCCCCCchhhHhhhhcCCCCchhhhhhhhccCCCCCCccccC
Q 009300          381 RKLAKDLVDKWSRPIFNKSTRFEDMKTVEDD--RVPFRRPSAKKPASKAAAMESRDGDFDDLVISRERKSGQSSSGQHAS  458 (538)
Q Consensus       381 KrlA~~LI~kWsRPI~~~ss~Y~d~~~~e~e--r~~~rr~~~kk~~~k~a~~esr~~dld~~~~~~~~k~G~~~~~~~a~  458 (538)
                      +++|..||++|+||||+.|.+|+|.+....+  -..++..    .....+..++.++.-  .+...+...-++.|+++++
T Consensus       272 ~r~A~~LV~eWtrpIik~s~nyRDk~i~~~~F~~E~~~~k----~~~D~A~~~~~~~s~--~~~T~R~~~~~tl~~~~~~  345 (397)
T COG5139         272 RRSAKALVQEWTRPIIKPSGNYRDKRIMQLEFDSEKLRKK----SVMDSAKNRKKKSSG--EDPTSRGSSVQTLYEQAAA  345 (397)
T ss_pred             HHHHHHHHHHhhccccCcCCCcchhhhheeecCHHHHHHH----HHHHHHhhhcccccc--cCCCCCCcchhhHHHHHhh
Confidence            9999999999999999999999997654322  1112211    111112222111100  0111112234678888877


Q ss_pred             CCCcccccccCCCCCCCCCeeeCCCCCCChHHHHHHhhhhchHHHHHHHHHHHHhhhccccccccccccccccCCc
Q 009300          459 RSDSSSRQHASRPEATPLDFVVRPQSKIDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQATKLSVEGRGM  534 (538)
Q Consensus       459 r~~~~~r~rArvP~~s~~DYviRPkskvd~~~~rar~Kk~~~derr~Kl~kkL~qlk~~kKK~~RA~~ISIEGR~M  534 (538)
                      +     +++|+.|.+.|++|.+.|.++.-..-..+++++                   .+.+...+..+||+|++|
T Consensus       346 ~-----~~~~~~Pa~~T~~~k~~P~~~~~~~~~~Ar~~~-------------------v~S~~~~~~~~~~~~~~L  397 (397)
T COG5139         346 R-----RNRAAAPAQTTTDYKYAPVSNLSAVPTNARAVG-------------------VGSTLNNSEMYKRLTSRL  397 (397)
T ss_pred             c-----cccccCccccccccccccccccccccccchhhh-------------------hhcccccchhhhhhccCC
Confidence            7     999999999999999999988754333333332                   334455677899999875

>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription

Probab=99.06  E-value=1.1e-10  Score=90.50  Aligned_cols=53  Identities=45%  Similarity=0.737  Sum_probs=47.3

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhh
Q 009300          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF  396 (538)
Q Consensus       337 ~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~  396 (538)
                      ++|+.|..|||+.      ++|++|+||++|.+|++| .++++++.+|..||.+|.++|+
T Consensus         1 ~iL~~L~~l~it~------~~L~~T~IGk~V~~l~k~-~~~~~i~~~A~~Li~~Wk~~v~   53 (53)
T PF08711_consen    1 EILKVLEKLPITV------ELLKSTGIGKAVNKLRKH-SENPEIRKLAKELIKKWKRIVD   53 (53)
T ss_dssp             HHHHHHHCSS-SH------HHHHHHSHHHHHHHHHHC-TS-HHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHhhcCCCCH------HHHHhCChhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHhcC
Confidence            5899999999964      689999999999999999 9999999999999999999985

The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.

>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

Probab=98.24  E-value=2.7e-06  Score=71.06  Aligned_cols=58  Identities=29%  Similarity=0.563  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhh
Q 009300          330 PNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPI  395 (538)
Q Consensus       330 Pnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI  395 (538)
                      |+...--.+|..|..|||+.      +.|+.++||++|.+|++|+.  +.++.+|..||..|...|
T Consensus        18 ~~~~~~~~~L~~L~~~~it~------~~L~~T~iG~~V~~Lrkh~~--~~i~~~A~~Lv~~Wk~~v   75 (76)
T cd00183          18 EEVSRLLDLLRLLKKLPLTV------EILKETRIGKKVNSLRKHSN--EKIRKLAKALIKSWKKLV   75 (76)
T ss_pred             CCHHHHHHHHHHHhcCCCCH------HHHHHCCHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhc
Confidence            78888889999999999864      68999999999999999987  999999999999999876

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)

Probab=97.67  E-value=4.5e-05  Score=63.85  Aligned_cols=54  Identities=33%  Similarity=0.583  Sum_probs=46.8

Q ss_pred             HHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhh
Q 009300          335 RAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF  396 (538)
Q Consensus       335 R~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~  396 (538)
                      =-.+|..|..||+..      +.|+.+.||++|..|++|+  .++++.+|..||..|..-|.
T Consensus        21 ~l~~L~~L~~~~~t~------~~L~~T~iG~~v~~Lrkh~--~~~I~~~A~~Li~~WK~~v~   74 (75)
T smart00509       21 CLDILKKLKKLPITV------DLLEETRIGKKVNGLRKHK--NEEIRKLAKKLIKSWKKLVY   74 (75)
T ss_pred             HHHHHHHHhcCCCCH------HHHHHCcHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHhc
Confidence            346788888899854      6899999999999999996  59999999999999987663

>TIGR01385 TFSII transcription elongation factor S-II

Probab=96.60  E-value=0.0018  Score=67.27  Aligned_cols=53  Identities=30%  Similarity=0.465  Sum_probs=46.6

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhc
Q 009300          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFN  397 (538)
Q Consensus       337 ~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~  397 (538)
                      .||+.|..|||..      +.|+.+.||++|..|.+|+.  +++..+|..||..|..-|..
T Consensus        25 ~~L~~L~~~~~t~------~lL~~T~IG~~Vn~lrkh~~--~~I~~lAk~li~~WK~~v~~   77 (299)
T TIGR01385        25 DILHQLKEFPPTE------ELLQETKVGVKVNKLRKHPN--EDISKLAKKIIKSWKKVVDK   77 (299)
T ss_pred             HHHHHHhcCCCcH------HHHhhCchhHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHhh
Confidence            4678888888853      68999999999999999975  56999999999999999976

This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.

>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]

Probab=94.75  E-value=0.047  Score=56.98  Aligned_cols=73  Identities=29%  Similarity=0.423  Sum_probs=59.5

Q ss_pred             HHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceeh-hhccCchhcHHHHHHHHHHHHHhh
Q 009300          314 LTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIM-FLSKSDEETTSNRKLAKDLVDKWS  392 (538)
Q Consensus       314 L~vl~~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVm-fl~K~p~ET~eNKrlA~~LI~kWs  392 (538)
                      +.+.+. |+-++..  +|+.-=-.+|+-|.++||.      .++|..+.||..|. ++.+|+.+  +++.+|+.||..|.
T Consensus         7 ~r~ak~-l~~~~~~--~n~~~~ld~l~~L~~~pvt------~ell~~Tr~g~~vn~~~Kk~~n~--ev~~~ak~Lik~Wk   75 (296)
T KOG1105|consen    7 LRAAKA-LEKDKQS--KNVEAALDLLKRLKKIPVT------LELLQETRTGMGVNEVLKKHKNE--EVRSLAKKLIKSWK   75 (296)
T ss_pred             HHHHHH-HHhhccc--ccHHHHHHHHHHHHhcccH------HHHHHHhhHHHHHHHHHHhCCCH--HHHHHHHHHHHHHH
Confidence            333344 6666665  7877777889999999994      36899999999999 88888876  68889999999999


Q ss_pred             hhhhc
Q 009300          393 RPIFN  397 (538)
Q Consensus       393 RPI~~  397 (538)
                      +-|..
T Consensus        76 k~~~~   80 (296)
T KOG1105|consen   76 KLVDK   80 (296)
T ss_pred             HHhhc
Confidence            99986

>PLN02976 amine oxidase

Probab=93.77  E-value=0.17  Score=62.56  Aligned_cols=86  Identities=21%  Similarity=0.288  Sum_probs=65.2

Q ss_pred             HhHHHHHHhhhhHHHHHHhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHH
Q 009300          302 KQLQQEFLDHGVLTLLKNWLE--PLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS  379 (538)
Q Consensus       302 ~~Lq~~fLd~giL~vl~~WLe--PLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~e  379 (538)
                      .+|..+-+....|..|..||.  --++|    -++-+.++.+|.-+|.+.      -.|+.|||||+|---. +--..++
T Consensus      1272 ~~~~~~a~~~~gl~~l~~w~~~~~~~~~----~~l~~~~~~ll~~~~~d~------~a~r~sg~~~~~k~~~-~~h~~~~ 1340 (1713)
T PLN02976       1272 ETLKSFAGTKEGLATLNSWILDSMGKDG----TQLLRHCVRLLVLVSTDL------LAVRLSGIGKTVKEKV-CVHTSRD 1340 (1713)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhcccH----HHHHHHHHHHHhhcchhH------HHHHhccchHHHHhhh-hhcccHH
Confidence            455556666788999999998  44555    356678888888888654      3799999999994322 4457789


Q ss_pred             HHHHHHHHHHHhhhhhhcC
Q 009300          380 NRKLAKDLVDKWSRPIFNK  398 (538)
Q Consensus       380 NKrlA~~LI~kWsRPI~~~  398 (538)
                      +|.||.+|++.|+-..-..
T Consensus      1341 ~r~~a~~~~~~w~~~~~~~ 1359 (1713)
T PLN02976       1341 IRAIASQLVSVWLEVFRRE 1359 (1713)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	538
2xpl_A	148	Crystal Structure Of Iws1(Spn1) Conserved Domain Fr		3e-19
2xpn_A	145	Crystal Structure Of A Spt6-Iws1(Spn1) Complex From		3e-19
3nfq_A	170	Crystal Structure Of The Conserved Central Domain O		2e-18
3o8z_A	152	Crystal Structure Of Spn1 (Iws1) Core Domain Length		3e-17
3oak_A	151	Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex Len		1e-16

>pdb|2XPL|A Chain A, Crystal Structure Of Iws1(Spn1) Conserved Domain From Encephalitozoon Cuniculi Length = 148

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 31  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 90
Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW+  +F
Sbjct: 91  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 142

>pdb|2XPN|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From Encephalitozoon Cuniculi, Form I Length = 145

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 28  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 87
Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW+  +F
Sbjct: 88  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 139

>pdb|3NFQ|A Chain A, Crystal Structure Of The Conserved Central Domain Of Yeast Spn1IWS1 Length = 170

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A  K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 26  NIAAQLDIDTLNKRIETGDTSLIAXQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 85
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 86  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 139
Query: 382 KLAKDLVDKWSRPIFNKSTRFED 404
           +LA+ L+ +W+RPI   S  + D
Sbjct: 140 RLAEKLIAEWTRPIIGASDNYRD 162

>pdb|3O8Z|A Chain A, Crystal Structure Of Spn1 (Iws1) Core Domain Length = 152

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 23  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 82
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 83  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 136
Query: 382 KLAKDLVDKWSRPIFN 397
           +LA+ L+ +W+RPI  
Sbjct: 137 RLAEKLIAEWTRPIIG 152

>pdb|3OAK|A Chain A, Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex Length = 151

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 25  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 84
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 85  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 138
Query: 382 KLAKDLVDKWSRP 394
           +LA+ L+ +W+RP
Sbjct: 139 RLAEKLIAEWTRP 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	538
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	5e-44
3nfq_A	170	Transcription factor IWS1; SPN1, RNA polymerase II	3e-41
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A Length = 145

 Score =  151 bits (383), Expect = 5e-44
 Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 6/148 (4%)

Query: 253 SPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHG 312
            P  +  +  ++   ++   ++D   N +G+PA  K++ +  ++++L  K LQ+  LD G
Sbjct: 2   DPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEG 61

Query: 313 VLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSK 372
           +L  +K WLEPLPD S+PNI IR  +L +L    I       +E L  SG+GK++ F S 
Sbjct: 62  ILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH------KEHLVTSGVGKIVYFYSI 115

Query: 373 SDEETTSNRKLAKDLVDKWSRPIFNKST 400
           + +E+   R  AK LV KW+  +F    
Sbjct: 116 NPKESKEVRASAKALVQKWTNEVFKPEG 143

>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A Length = 170

 Score =  145 bits (367), Expect = 3e-41
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 245 KKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNR-------QGKPAINKLKKLSLLTE 297
           + R+  +     +   +  +  E+ + A+ D +              A+ K+K L  +  
Sbjct: 2   RTRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVS 61

Query: 298 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQ 357
           VLSK  L    LD+ +L  ++ WLEPLPDGSLP+  I+ ++   L + P+        E 
Sbjct: 62  VLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK------TEH 115

Query: 358 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDD 411
           LK+SGLG+V++F +KS        +LA+ L+ +W+RPI   S  + D + ++ +
Sbjct: 116 LKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIGASDNYRDKRIMQLE 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 5e-13
 Identities = 79/470 (16%), Positives = 132/470 (28%), Gaps = 142/470 (30%)

Query: 17  MDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNE-----K 71
           MD++             Q+Q  ++L  F+D  V +      ++     + +  E      
Sbjct: 7   MDFE---------TGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIM 56

Query: 72  SSKPRKR-------LVKKGAKESGSTPSLIDEREDEYD-----DEGEDNIIGDDFEREIE 119
           S             L+ K   E      + +     Y       + E           IE
Sbjct: 57  SKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 120 ERKRKKWGKEGGKDHNTK------------KRLKSGGDKKFSSSGGKSSGFKSSRAGSIR 167
           +R R     +    +N                L+    K     G   SG K+  A  + 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSG-KTWVALDVC 171

Query: 168 DNDKMLNEM-----WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFA 222
            + K+  +M     W  +      E   E ++ L     ID +    SD   S +     
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDH--SSNIKLRI 227

Query: 223 HDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLV-ENVMAELEVTAEEDAELNRQ 281
           H            E++ L K   K  +N        LLV  NV         ++A+    
Sbjct: 228 HSI--------QAELRRLLK--SKPYEN-------CLLVLLNV---------QNAKA--- 258

Query: 282 GKPAINKLK---KLSLLT-------EVLSKKQLQQEFLDHG--------VLTLLKNWLEP 323
                N      K+ LLT       + LS        LDH         V +LL  +L+ 
Sbjct: 259 ----WNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD- 312

Query: 324 LPDGSLPN---------INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSD 374
                LP          ++I A  ++   +           +  K     K+   +  S 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIR---DGL------ATWDNWKHVNCDKLTTIIESSL 363

Query: 375 E--ETTSNRKLAKDLVDKWSRPIFNKSTR---------FEDMKTVEDDRV 413
              E    RK+   L       +F  S           + D+   +   V
Sbjct: 364 NVLEPAEYRKMFDRLS------VFPPSAHIPTILLSLIWFDVIKSDVMVV 407

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 5e-11
 Identities = 77/578 (13%), Positives = 169/578 (29%), Gaps = 145/578 (25%)

Query: 6   DPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPV 65
            P + E  +P M             +  +  NDN +  F   +V       +R +    +
Sbjct: 96  SPIKTEQRQPSMMTRMYIE------QRDRLYNDNQV--FAKYNV-------SRLQPYLKL 140

Query: 66  YNNNEKSSKPRKRLVKKGAKESGSTPSLIDE--REDEYDDEGEDNI----IGDDFERE-- 117
                   +P K ++  G   SG T  +  +     +   + +  I    + +    E  
Sbjct: 141 -RQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 118 IEE------RKRKKWGKEGGKDHNTKKRLKSGGDKK---FSSSGGKSSGFKSSRAGSIRD 168
           +E       +    W        N K R+ S   +      S   +           +  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCLLVLL 251

Query: 169 N--DKMLNEMWNAVAPTGDSEDDQEGVRTL---DDDNFIDDSGVDPSDRYGSDSEPRFAH 223
           N  +    + WNA              + L         D   +  +       +     
Sbjct: 252 NVQNA---KAWNAFNL---------SCKILLTTRFKQVTDF--LSAATTTHISLDHH--- 294

Query: 224 DAPQAEEGDEDEEIKELFKMGKK-RKKNEKSPAE---IALLVENVMAELEVTAEEDAELN 279
                      +E+K L    K    + +  P E         +++AE     +  A  +
Sbjct: 295 -----SMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWD 345

Query: 280 RQGKPAINKLK---KLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRA 336
                  +KL    + SL   VL   + ++ F    V           P     + +I  
Sbjct: 346 NWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSV----------FPP----SAHIPT 389

Query: 337 AILKIL-----TEFPID-LEQFDRREQLKKSGLGKVI-------MFLSKSDEETTSNRKL 383
            +L ++         +  + +  +   ++K      I           K + E   +R  
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS- 448

Query: 384 AKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPF----RRPSAKKPASKAAAMESRDGDFDD 439
              +VD ++ P   K+   +D+     D+  +          +   +         DF  
Sbjct: 449 ---IVDHYNIP---KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 440 LVISRERKSGQSSSGQHASRSDSSS-------RQHASRPEATP-------LDFVVRPQSK 485
           L    E+K    S+  +AS S  ++       + +    +          LDF+ + +  
Sbjct: 503 L----EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 486 IDPEEVRARAKQVMQDQRRMKMNKKLQQLKAPRKKQLQ 523
           +    + ++   +++    + +  + + +     KQ+Q
Sbjct: 559 L----ICSKYTDLLR----IALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 62/396 (15%), Positives = 118/396 (29%), Gaps = 120/396 (30%)

Query: 199 DNFIDDSGV-DPSDRYG---SDSEPRFAHDAPQAEEG---------DEDEEIKELFKMGK 245
           D F+D+    D  D      S  E      +  A  G          + EE+ + F + +
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEE 85

Query: 246 KRKKN-----------EKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLK---- 290
             + N           ++ P+ +  +       L    +  A+ N        KL+    
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 291 -----------------KLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNIN 333
                            K  +  +V    ++Q +  D  +      WL      +L N N
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIF-----WL------NLKNCN 193

Query: 334 IRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSR 393
               +L++L +    ++                  + S+SD   +SN KL    +    R
Sbjct: 194 SPETVLEMLQKLLYQIDP----------------NWTSRSD--HSSNIKLRIHSIQAELR 235

Query: 394 PIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGDFDD----LVISRERKSG 449
            +  KS  +E+   V  + V  +   A                F+     L+ +R ++  
Sbjct: 236 RLL-KSKPYENCLLVLLN-V--QNAKAWNA-------------FNLSCKILLTTRFKQVT 278

Query: 450 QSSSGQHASRSDSSSRQHA-SRPEATPL--DFV-VRPQS------KIDP-------EEVR 492
              S    +           +  E   L   ++  RPQ         +P       E +R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 493 ---ARA---KQVMQDQRRMKMNKKLQQLKAPRKKQL 522
              A     K V  D+    +   L  L+    +++
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	538
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	100.0
3nfq_A	170	Transcription factor IWS1; SPN1, RNA polymerase II	100.0
1wjt_A	103	Transcription elongation factor S-II protein 3; fo	97.46
1pqv_S	309	STP-alpha, transcription elongation factor S-II, D	96.99

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A

Probab=100.00  E-value=1.5e-51  Score=378.52  Aligned_cols=144  Identities=34%  Similarity=0.637  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCC
Q 009300          252 KSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPN  331 (538)
Q Consensus       252 ~~~~ei~~~v~~Li~~M~~AAe~D~ean~~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLd~giL~vl~~WLePLPDgSLPn  331 (538)
                      ++++||.++|.+|+.+|..||++|+++|++++|||+||+|||+|+.+|+|.+||.+||++|+|++|+.||+|||||||||
T Consensus         1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~   80 (145)
T 2xpp_A            1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPN   80 (145)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhcCCcc
Q 009300          332 INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTR  401 (538)
Q Consensus       332 l~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~~ss~  401 (538)
                      |+||+.||++|.+|||++      +||++||||||||||++||+||++||++|.+||++|+||||++|++
T Consensus        81 ~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~~~s~~  144 (145)
T 2xpp_A           81 IKIRKRLLDVLKTMKIHK------EHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFKPEGG  144 (145)
T ss_dssp             HHHHHHHHHHHHTSCCCH------HHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHCCCCH------HHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999974      7899999999999999999999999999999999999999999875

>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A

Probab=100.00  E-value=6.7e-51  Score=382.32  Aligned_cols=156  Identities=33%  Similarity=0.629  Sum_probs=131.6

Q ss_pred             ccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHH-HH------cCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHH
Q 009300          247 RKKNEKSP-AEIALLVENVMAELEVTAEEDAEL-NR------QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLK  318 (538)
Q Consensus       247 kkk~~~~~-~ei~~~v~~Li~~M~~AAe~D~ea-n~------~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLd~giL~vl~  318 (538)
                      ||+.+.+. ...++.|.+|+.+|..||++|.++ |+      +++|||+||+|||+|+++|+|.+||.+||++|||++|+
T Consensus         3 ~~~~~~dl~~~~Dd~i~~L~~~M~~Aa~~D~~~~n~~~~~~~~~~PAl~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~   82 (170)
T 3nfq_A            3 TRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVR   82 (170)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHH
T ss_pred             ccchhhhHHHhhhHHHHHHHHHHHHHHHHhHHHHHhhhccccccccHHHHHhhHHHHHHHHhHHHHHHHHHHcchHHHHH
Confidence            34445554 566789999999999999999874 43      57999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhcC
Q 009300          319 NWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNK  398 (538)
Q Consensus       319 ~WLePLPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~~  398 (538)
                      .||+||||||||||+||+.||++|.+|||++      +||++||||||||||++||+||++||++|.+||++||||||++
T Consensus        83 ~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~~~  156 (170)
T 3nfq_A           83 IWLEPLPDGSLPSFEIQKSLFAALNDLPVKT------EHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIGA  156 (170)
T ss_dssp             HHHSCCTTSCCCCHHHHHHHHHHHHTSCCCH------HHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC--
T ss_pred             HHhCcCCCCCCCcHHHHHHHHHHHHHCCCCH------HHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999965      6899999999999999999999999999999999999999999


Q ss_pred             Cccchhhhhh
Q 009300          399 STRFEDMKTV  408 (538)
Q Consensus       399 ss~Y~d~~~~  408 (538)
                      |++|++++..
T Consensus       157 s~~y~~~~~~  166 (170)
T 3nfq_A          157 SDNYRDKRIM  166 (170)
T ss_dssp             ----------
T ss_pred             Ccchhhhhhh
Confidence            9999997643

>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1

Probab=97.46  E-value=4.4e-05  Score=66.59  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhc
Q 009300          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFN  397 (538)
Q Consensus       337 ~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~  397 (538)
                      .+|+.|..|||..      +.|++++||++|.-|.|| ...++++.+|..||.+|...+-.
T Consensus        35 ~~L~~L~~~~iT~------e~L~~T~IGk~Vn~LrKh-~~~~~V~~lAk~Lv~~WK~~v~~   88 (103)
T 1wjt_A           35 DLLKKLNSCQMSI------QLLQTTRIGVAVNGVRKH-CSDKEVVSLAKVLIKNWKRLLDS   88 (103)
T ss_dssp             HHHHHHHTSCCCH------HHHHHTCHHHHHHHHHHH-CCCSHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCCCH------HHHHHcchhHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            5788889999854      689999999999999998 24458899999999999988754

>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A

Probab=96.99  E-value=0.00043  Score=70.20  Aligned_cols=54  Identities=26%  Similarity=0.426  Sum_probs=44.9

Q ss_pred             HHHHHH-hcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhhhcC
Q 009300          337 AILKIL-TEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNK  398 (538)
Q Consensus       337 ~LLkiL-~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI~~~  398 (538)
                      .+|+.| ..+||..      +.|+.++||++|..|.+|  ..++++.+|..||.+|...|...
T Consensus        25 ~~L~~L~~~~~it~------~~L~~T~IG~~Vn~lrkh--~~~~v~~~Ak~Li~~WK~~v~~~   79 (309)
T 1pqv_S           25 EILHVLDKEFVPTE------KLLRETKVGVEVNKFKKS--TNVEISKLVKKMISSWKDAINKN   79 (309)
T ss_pred             HHHHHHHhcCCCCH------HHHHhCChhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence            455555 5569854      689999999999999999  45589999999999999998664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	538
d1wjta_	103	Transcription elongation factor S-II protein 3 {Mo	97.64
d1eo0a_	77	Transcription elongation factor TFIIS N-domain {Ba	97.42

>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor S-II protein 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.3e-05  Score=67.80  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             HHHHHHhhcc-CCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhh
Q 009300          314 LTLLKNWLEP-LPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWS  392 (538)
Q Consensus       314 L~vl~~WLeP-LPDgSLPnl~IR~~LLkiL~~LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWs  392 (538)
                      +..|+.||+- ..+.+.+.+   -.+|+.|..+||..      ++|++++||++|.-|.||.. .++++.+|..||.+|.
T Consensus        14 i~~i~k~L~~~~~~~~~~~v---l~~L~~L~~~~it~------e~L~~T~IGk~Vn~LrK~~~-~~~v~~lAk~Lv~~WK   83 (103)
T d1wjta_          14 LLRIAKKLEKMVSRKKTEGA---LDLLKKLNSCQMSI------QLLQTTRIGVAVNGVRKHCS-DKEVVSLAKVLIKNWK   83 (103)
T ss_dssp             HHHHHHHHHHHHHTTCCSSH---HHHHHHHHTSCCCH------HHHHHTCHHHHHHHHHHHCC-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHH---HHHHHHHHcCCCCH------HHHHhCCccHhHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence            3446666664 245555443   37899999999964      68999999999999998742 2589999999999999


Q ss_pred             hhh
Q 009300          393 RPI  395 (538)
Q Consensus       393 RPI  395 (538)
                      ..|
T Consensus        84 ~~v   86 (103)
T d1wjta_          84 RLL   86 (103)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            876

>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor TFIIS N-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=2.4e-05  Score=63.22  Aligned_cols=51  Identities=25%  Similarity=0.448  Sum_probs=43.2

Q ss_pred             HHHHHHhc-CCCCccccchHHHHhhcCccceehhhccCchhcHHHHHHHHHHHHHhhhhh
Q 009300          337 AILKILTE-FPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPI  395 (538)
Q Consensus       337 ~LLkiL~~-LPI~~e~~d~re~Lk~SGLGKvVmfl~K~p~ET~eNKrlA~~LI~kWsRPI  395 (538)
                      .+|+.|.. |||..      +.|+.++||++|.-|.+|+.  +++..+|..||.+|..-|
T Consensus        25 ~~L~~L~~~~~it~------d~L~~T~iG~~Vn~LRkh~~--~~v~~lAk~Lv~~WK~~V   76 (77)
T d1eo0a_          25 EILHVLDKEFVPTE------KLLRETKVGVEVNKFKKSTN--VEISKLVKKMISSWKDAI   76 (77)
T ss_dssp             HHHHHHTTTCSCST------THHHHHHHHHHHHHCCSSSC--TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcH------HHHHHCCccHHHHHHhcCCc--HHHHHHHHHHHHHHHHhc
Confidence            56888875 99854      58999999999999999975  578999999999997643