Citrus Sinensis ID: 009302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQVAEGTC
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccEEEccccccccccccHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccEEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEccccccccccccEEEEccccccEEEEcccccEEEEEEEEEccccEEcccccccccccccccEEEEccccccccccEEEEEccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHccHHHcEEEEEccccccccccccccccccccccEEcccccccHHHcccccccccccEEEEccccEEEEcEEccccEEEEcccccccEEccHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccEEEEEEEEccccccEEEEEEEcEEEEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccEEEEcccccEEcccccEEEEccccccEEEEccccEEEEEEEEEEccccEEccccccccccccccEEEEEEEcHHHHcccEEEEEcccccccccEEEEEHHHcccccc
Coil and Loop (DISEMBL)
MVDDRLLERERQQIEQIRQLDFEElqveevddfhdssddddraatgadssnqltFDTCLASLHTYLGDVEDTHNRMAFleggailtlplfyldgvvlfpeatlplrvikPNFIAAAERALsqvdvpytIGVVRVfrepdngritfatIGTTAEIRQYrrledgslnvVTRGQQRFRLRRrwidvegvpcgeiqiiqedlplrtprdvfetlgcvsnlsqslshtlpsnsssrgygirdndsdatseesfeselspterrIHQSVIDFaygcdimdestssdddksafqsdiqsrrphlndsdsignwkqsenvglrigkssalgrqshrgegskmCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKqivgtpnmdglvkkpdlLSFYIAskipvsestRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRsdmlvmssegplgayvnphgcVHEILTLnkanglalygpaeteyswfpgyawtVASCSICETHMGWLFtatkkklkpksfwgirssqvaegtc
Flexible Loop (DISEMBL)
mvddrllererQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAatgadssnqltFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERalsqvdvpyTIGVVrvfrepdngritfatigttaeirqyrrledgslnvvtrgqqrfrlrrrwidvegvpcgeiqiiqedlplrTPRDVFETLGCVSNlsqslshtlpsnsssrgygIRDNDSDATSEEsfeselspterrihQSVIDFAYGCDIMDESTSSDDDKSAFQSDIqsrrphlndsdsignwkqsenvglrigkssalgrqshrgegskmcwrneLSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASkipvsestrqelLEIDGVSYRLRREIEllesfdlvrckTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTatkkklkpksfwgirssqvaegtc
Low Complexity Region (SEG)
MVDDrllererqqieqirqlDFEELQVEEVddfhdssddddraatgadssNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTrgqqrfrlrrrWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLsqslshtlpsnsssRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQVAEGTC
Disordered region (IsUnstruct)
****************************************************LTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSN********************************************HQSVIDFAYGCDI*************************************************************MCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGI**********
Disordered Region (DISOPRED)
********RERQQI*****************************************DTCLASLHTYLGDVED***********AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFRE**NGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLS********SNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYG*****************************************************************CWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLV*SSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQVA****
Disordered Region (DISEMBL)
MVDDRLLERERQQIEQIRQLDFEELQVEE*****************ADSSNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLS***************************************RRIHQSVIDFAYGCDIMDE************************SDSIGNWKQSENVGLRIGKSS************KMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIR*********
Disordered Region (DISPRO)
****RLLERERQQIEQIRQLDFEELQVEEVD********************QLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLS*T****S*S****************SFESELSPTERRIHQSVIDFAYGC************************************************************GSKMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQV*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQVAEGTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	538	2.2.26 [Sep-21-2011]
Q96SW2	442	Protein cereblon OS=Homo	yes	no	0.332	0.404	0.422	4e-38
Q5R6Y2	429	Protein cereblon OS=Pongo	yes	no	0.336	0.421	0.417	6e-38
Q0P564	444	Protein cereblon OS=Bos t	yes	no	0.336	0.407	0.406	8e-38
P0CF65	445	Protein cereblon OS=Gallu	yes	no	0.355	0.429	0.395	9e-38
Q8C7D2	445	Protein cereblon OS=Mus m	yes	no	0.332	0.402	0.411	2e-37
Q640S2	447	Protein cereblon OS=Xenop	yes	no	0.375	0.451	0.390	2e-37
Q56AP7	445	Protein cereblon OS=Rattu	yes	no	0.332	0.402	0.411	2e-37
Q68EH9	431	Protein cereblon OS=Danio	yes	no	0.405	0.505	0.363	4e-37
B4M686	640	Protein cereblon homolog	N/A	no	0.356	0.3	0.316	1e-23
B4KCG1	676	Protein cereblon homolog	N/A	no	0.356	0.284	0.311	1e-22

>sp|Q96SW2|CRBN_HUMAN Protein cereblon OS=Homo sapiens GN=CRBN PE=1 SV=1

 Score =  159 bits (403), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 1/180 (0%)

Query: 353 PHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLE 412
           P W+Y +YD+  L  R   + ++       D L   P   S+ +A+ +P+ +  R +LL+
Sbjct: 241 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK 300

Query: 413 IDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSEGPLGAYVNPHGCVHEIL 471
           I     RLR E++++     + CK C+ T I  ++++  +S  GP+ AYVNPHG VHE L
Sbjct: 301 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL 360

Query: 472 TLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSS 531
           T+ KA  L L G   TE+SWFPGYAWTVA C IC +H+GW FTATKK + P+ FWG+  S
Sbjct: 361 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS 420

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. Regulates the assembly and neuronal surface expression of large-conductance calcium-activated potassium channels in brain regions involved in memory and learning via its interaction with KCNT1.
Homo sapiens (taxid: 9606)

>sp|Q5R6Y2|CRBN_PONAB Protein cereblon OS=Pongo abelii GN=CRBN PE=2 SV=1

 Score =  159 bits (402), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 1/182 (0%)

Query: 353 PHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLE 412
           P W+Y +YD+  L  R   + ++       D L   P   S+ +A+ +P+ +  R +LL+
Sbjct: 228 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK 287

Query: 413 IDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSEGPLGAYVNPHGCVHEIL 471
           I     RLR E++++     + CK C+ T I  ++++  +S  GP+ AYVNPHG VHE L
Sbjct: 288 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL 347

Query: 472 TLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSS 531
           T+ KA  L L G   TE+SWFPGYAWTVA C IC +H+GW FTATKK + P+ FWG+  S
Sbjct: 348 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS 407

Query: 532 QV 533
            +
Sbjct: 408 AL 409

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. Regulates the assembly and neuronal surface expression of large-conductance calcium-activated potassium channels in brain regions involved in memory and learning via its interaction with KCNT1.

Pongo abelii (taxid: 9601)

>sp|Q0P564|CRBN_BOVIN Protein cereblon OS=Bos taurus GN=CRBN PE=2 SV=1

 Score =  159 bits (401), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 1/182 (0%)

Query: 353 PHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLE 412
           P W+Y +YD+  L  R   + ++       D L   P   S+ +A+ +P+ +  R +LL+
Sbjct: 243 PRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQLLK 302

Query: 413 IDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSEGPLGAYVNPHGCVHEIL 471
           I     RLR E++++     + CK C+ T I  ++++  +S  GP+ AYVNPHG VHE L
Sbjct: 303 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL 362

Query: 472 TLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSS 531
           T+ KA+ L L G   T++SWFPGYAWT+A C IC +H+GW FTATKK + P+ FWG+  S
Sbjct: 363 TVYKASNLNLIGRPSTDHSWFPGYAWTIAQCRICASHIGWKFTATKKDMSPQKFWGLTRS 422

Query: 532 QV 533
            +
Sbjct: 423 AL 424

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. Regulates the assembly and neuronal surface expression of large-conductance calcium-activated potassium channels in brain regions involved in memory and learning via its interaction with KCNT1.

Bos taurus (taxid: 9913)

>sp|P0CF65|CRBN_CHICK Protein cereblon OS=Gallus gallus GN=CRBN PE=2 SV=1

 Score =  158 bits (400), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 113/192 (58%), Gaps = 1/192 (0%)

Query: 343 QFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPV 402
           +F   S    P W+Y +YD+  L +R   +  +       + L   P   S+ +A+ +P+
Sbjct: 233 KFHCASLTSWPPWLYSLYDAETLMERVKRQLHEWDENLKDESLPTNPIDFSYRVAACLPI 292

Query: 403 SESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSEGPLGAYV 461
            ++ R +LL+I     RLR E++++     + CK C+ T I  ++++  +S  GP+ AYV
Sbjct: 293 DDALRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQDTEITTKNEIFSLSLCGPMAAYV 352

Query: 462 NPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLK 521
           NPHG +HE LT+ KA  L L G   TE+SWFPGYAWT+A C IC  HMGW FTATKK + 
Sbjct: 353 NPHGYIHETLTVYKACNLNLSGRPSTEHSWFPGYAWTIAQCRICGNHMGWKFTATKKDMS 412

Query: 522 PKSFWGIRSSQV 533
           P+ FWG+  S +
Sbjct: 413 PQKFWGLTRSAL 424

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. May also be involved in memory and learning.

Gallus gallus (taxid: 9031)

>sp|Q8C7D2|CRBN_MOUSE Protein cereblon OS=Mus musculus GN=Crbn PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 1/180 (0%)

Query: 353 PHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLE 412
           P W+Y +YD+  L  R   + ++       D L + P   S+ +A+ +P+ +  R +LL+
Sbjct: 244 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPENPIDFSYRVAACLPIDDVLRIQLLK 303

Query: 413 IDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSEGPLGAYVNPHGCVHEIL 471
           I     RLR E++++     + CK C+ T I  ++++  +S  GP+ AYVNPHG VHE L
Sbjct: 304 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL 363

Query: 472 TLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSS 531
           T+ KA+ L L G   T +SWFPGYAWT+A C IC +H+GW FTATKK + P+ FWG+  S
Sbjct: 364 TVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGLTRS 423

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. Regulates the assembly and neuronal surface expression of large-conductance calcium-activated potassium channels in brain regions involved in memory and learning via its interaction with KCNT1.

Mus musculus (taxid: 10090)

>sp|Q640S2|CRBN_XENTR Protein cereblon OS=Xenopus tropicalis GN=crbn PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 122/215 (56%), Gaps = 13/215 (6%)

Query: 327 SHRGEGSKMCWRNELSQFRRTSRAFL-------PHWVYRMYDSYCLAQRAADKWKQIVGT 379
           S R   SK  W   L ++RR  R FL       P W+Y +YD+  L +R   +  +    
Sbjct: 216 SGRSPQSKCQW---LHKYRR--RKFLGASLTSWPSWLYALYDADSLMERVKLQLHEWDEN 270

Query: 380 PNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK 439
              D L   P   S+ +A+ +P+ ++ R +LL+I     RLR E++++     + CK C 
Sbjct: 271 LRDDSLPANPIDFSYRVAACLPIDDALRIQLLQIGNAIQRLRCELDIMSKCTSLCCKHCP 330

Query: 440 -TAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWT 498
            T I  ++++  +S  GP+ AYVNPHG VHE LT+ KA  L+L G   TE SWFPG+AWT
Sbjct: 331 DTEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKAFNLSLVGRPSTENSWFPGFAWT 390

Query: 499 VASCSICETHMGWLFTATKKKLKPKSFWGIRSSQV 533
           +A C +C +HMGW FTA +K L P+ FWG+  S +
Sbjct: 391 IAQCRVCGSHMGWKFTAVRKDLSPQKFWGLTRSAL 425

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. May also be involved in memory and learning.

Xenopus tropicalis (taxid: 8364)

>sp|Q56AP7|CRBN_RAT Protein cereblon OS=Rattus norvegicus GN=Crbn PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 1/180 (0%)

Query: 353 PHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLE 412
           P W+Y +YD+  L  R   + ++       D L   P   S+ +A+ +P+ +  R +LL+
Sbjct: 244 PRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPANPIDFSYRVAACLPIDDVLRIQLLK 303

Query: 413 IDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSEGPLGAYVNPHGCVHEIL 471
           I     RLR E++++     + CK C+ T I  ++++  +S  GP+ AYVNPHG VHE L
Sbjct: 304 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL 363

Query: 472 TLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSS 531
           T+ KA+ L L G   T +SWFPGYAWT+A C IC +H+GW FTATKK + P+ FWG+  S
Sbjct: 364 TVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGLTRS 423

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. Regulates the assembly and neuronal surface expression of large-conductance calcium-activated potassium channels in brain regions involved in memory and learning via its interaction with KCNT1.

Rattus norvegicus (taxid: 10116)

>sp|Q68EH9|CRBN_DANRE Protein cereblon OS=Danio rerio GN=crbn PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 316 RIGKSSALGRQSHRGEGSKMCWRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWK 374
           R+   S   + +      K C +N    +    S    P WVY +YDS  L  R   +  
Sbjct: 193 RLHTHSPQTKHTQTTPPQKRCSQNYRQKKLHCASMTSWPPWVYSLYDSKTLMSRVKKQLH 252

Query: 375 QIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVR 434
           +       + L   P   S+ +A+ +P+ ++ R +LL+I     RLR E+++++    + 
Sbjct: 253 EWDENLKDESLPTNPTDFSYRVAACLPIDDALRLQLLKIGSAIQRLRCELDIMDRCTSLC 312

Query: 435 CKTCK-TAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFP 493
           CK C+ T I  ++++  +S  GP+ AYVNPHG VHE LT+ KA+ L L G   T +SWFP
Sbjct: 313 CKQCQDTEITSKNEIFSLSLYGPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTLHSWFP 372

Query: 494 GYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQV 533
           GYAWT+A C  C +HMGW F+A KK L P  FWG+  S +
Sbjct: 373 GYAWTIAQCRTCSSHMGWKFSAVKKDLSPPRFWGLTRSAL 412

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. May also be involved in memory and learning.

Danio rerio (taxid: 7955)

>sp|B4M686|CRBN_DROVI Protein cereblon homolog OS=Drosophila virilis GN=GJ10436 PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 4/196 (2%)

Query: 343 QFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPV 402
           +FRR      P W Y   + Y   +   +K +Q +    +D + K P  LSF++   + +
Sbjct: 420 KFRRYQLTSTP-WPYEACEEYSF-EHIVEKARQKLEIHKIDTMPKCPIQLSFWLVRNLHL 477

Query: 403 SESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVN 462
           +E   +     D V+ RL+     L+   L  C+ C +++A  SD+  MS  G    Y N
Sbjct: 478 TEKMMRLTFLTDSVNIRLQIIDTTLKQESLFYCRYCNSSLAYCSDLFAMSKHGVQTQYCN 537

Query: 463 PHGCVHEILTLNK--ANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKL 520
             G +HE  T+ +  A+ +   G   TE+SWFPGY W +  C  C  H+GW F A +  L
Sbjct: 538 SAGYIHETNTVYRVIAHAIGYSGEPSTEFSWFPGYQWHIIICKFCAQHVGWEFKAVEPNL 597

Query: 521 KPKSFWGIRSSQVAEG 536
            PK F+G+  S V  G
Sbjct: 598 APKVFFGLAGSSVRIG 613

Drosophila virilis (taxid: 7244)

>sp|B4KCG1|CRBN_DROMO Protein cereblon homolog OS=Drosophila mojavensis GN=GI23135 PE=3 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 4/196 (2%)

Query: 343 QFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPV 402
           +FRR      P W       Y   +   +K +Q +    +D + K P  LSF++   + +
Sbjct: 456 KFRRFQLTTTP-WPVEACGEYSF-EHIVEKARQKLEIHKIDTMPKCPIQLSFWLVRNLHL 513

Query: 403 SESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVN 462
           +E   +     D V+ RL+     L+   L  C+ C +++A  SD+  MS  G    Y N
Sbjct: 514 TEKMMRLTFLTDSVNIRLQIIGTTLKHESLFYCRYCNSSLAYCSDLFAMSKHGVQTQYCN 573

Query: 463 PHGCVHEILTLNK--ANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKL 520
             G +HE  T+ +  A+ +   G   TE+SWFPGY W +  C  C  H+GW F A +  L
Sbjct: 574 SAGYIHETNTVYRVIAHAIGYSGEPSTEFSWFPGYQWHIIICKFCAQHVGWEFKAVEPNL 633

Query: 521 KPKSFWGIRSSQVAEG 536
            PK F+G+  S V  G
Sbjct: 634 APKVFFGLAGSSVRIG 649

Drosophila mojavensis (taxid: 7230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
224141713	542	predicted protein [Populus trichocarpa]	0.990	0.983	0.730	0.0
224088992	549	predicted protein [Populus trichocarpa]	0.964	0.945	0.672	0.0
255550958	550	ATP-dependent peptidase, putative [Ricin	0.992	0.970	0.679	0.0
359475968	543	PREDICTED: protein cereblon-like [Vitis	0.988	0.979	0.679	0.0
296081564	548	unnamed protein product [Vitis vinifera]	0.994	0.976	0.673	0.0
357436307	556	Protein cereblon [Medicago truncatula] g	0.960	0.929	0.664	0.0
449461333	546	PREDICTED: protein cereblon-like [Cucumi	0.983	0.968	0.634	0.0
449515456	546	PREDICTED: LOW QUALITY PROTEIN: protein	0.983	0.968	0.632	0.0
297821997	542	ATP-dependent protease La domain-contain	0.968	0.961	0.587	1e-175
30682884	547	cereblon [Arabidopsis thaliana] gi|59958	0.972	0.956	0.579	1e-172

>gi|224141713|ref|XP_002324209.1| predicted protein [Populus trichocarpa] gi|222865643|gb|EEF02774.1| predicted protein [Populus trichocarpa]

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/542 (73%), Positives = 450/542 (83%), Gaps = 9/542 (1%)

Query: 3   DDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLASL 62
           DDR+LE ER QIEQIRQLDFEELQVEEVDD    S  DDR A+GA SS+  TF+TCLASL
Sbjct: 4   DDRILEAERHQIEQIRQLDFEELQVEEVDDDDSDSSLDDRDASGAGSSDDFTFNTCLASL 63

Query: 63  HTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQ 122
           HTYLG+VEDTH+R+AFL+GGAIL LPLFYL+GVVLFPEATLPLRVI+PNFI+A ERAL Q
Sbjct: 64  HTYLGEVEDTHHRLAFLDGGAILNLPLFYLEGVVLFPEATLPLRVIQPNFISAVERALVQ 123

Query: 123 VDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWI 182
           VD PYT+GVVR +R+ DN R+ FAT+GTTAEIRQYRRLEDGSLNVVTRGQQRFRL+RRWI
Sbjct: 124 VDAPYTVGVVRAYRDSDNRRLRFATVGTTAEIRQYRRLEDGSLNVVTRGQQRFRLKRRWI 183

Query: 183 DVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNL-SQSLSHTLPSNSSSRGYGIRDNDS 241
           DVEGVPCGE+QIIQED+PLRTP+D F  L  +SNL S   S  LPS  SS GYG  DNDS
Sbjct: 184 DVEGVPCGEVQIIQEDMPLRTPKDAFGKLAPLSNLRSHKFSSVLPSTFSSVGYGHSDNDS 243

Query: 242 DATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQS-DIQSRRPHLND 300
           +A SEESFE+ELS  ERRIHQS ++  YG D+MDES SSDDDK   +S +++SRR HL++
Sbjct: 244 EANSEESFETELSLAERRIHQSALNSCYGYDMMDESMSSDDDKFMSRSEEMRSRRSHLSE 303

Query: 301 SDSIGNWKQSENVG---LRIGKSSALGRQSHRGEGSKMCWRN-ELSQFRRTSRAFLPHWV 356
           ++        +N+G   L IG SS L +   +GEGSK CW+N +L+QFRR  R F P+WV
Sbjct: 304 TEGSLYLDTGKNLGNTTLEIGNSSGLVK---KGEGSKRCWKNTDLNQFRRVPRTFWPYWV 360

Query: 357 YRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGV 416
           Y MYDSYCLA++AAD WKQIVG P+MDGLV+KPDLLSFYIASKIPVSE TRQELLEIDG+
Sbjct: 361 YSMYDSYCLAEKAADMWKQIVGAPSMDGLVRKPDLLSFYIASKIPVSEETRQELLEIDGI 420

Query: 417 SYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKA 476
           SYRLRREI+LLE+FDLVRCKTCK  I++RSDMLVMSSEGPLGAYVNP G VHEI+TL KA
Sbjct: 421 SYRLRREIDLLETFDLVRCKTCKIVISRRSDMLVMSSEGPLGAYVNPLGYVHEIMTLQKA 480

Query: 477 NGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQVAEG 536
           NGLAL G A  EYSWFPGYAWTVA C+ CE  MGWLFTATKKKLKP+SFWGIRSSQVA  
Sbjct: 481 NGLALIGRATAEYSWFPGYAWTVAECASCEIQMGWLFTATKKKLKPQSFWGIRSSQVAGD 540

Query: 537 TC 538
           TC
Sbjct: 541 TC 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088992|ref|XP_002308593.1| predicted protein [Populus trichocarpa] gi|222854569|gb|EEE92116.1| predicted protein [Populus trichocarpa]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/544 (67%), Positives = 427/544 (78%), Gaps = 25/544 (4%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLA 60
           M D R+LE ER++I           Q  E ++     + D R +TGA SS+  TF+ CLA
Sbjct: 1   MDDVRILEAERRRI-----------QELEFEELQVEEEVDGRDSTGAGSSDDFTFNPCLA 49

Query: 61  SLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERAL 120
           SLHTYLG+VEDTH+R+AFL+GGA+L LPLFYL+GVVLFPEATLPLRV++PNFI+A ERAL
Sbjct: 50  SLHTYLGEVEDTHHRLAFLDGGAVLNLPLFYLEGVVLFPEATLPLRVVQPNFISAVERAL 109

Query: 121 SQVDVPYTIGVVRVFR--EPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLR 178
            QVD P+ +GVVR +R  + DN ++ FAT+GTTAEIRQYRRLEDGSLNVVTRGQQRF L+
Sbjct: 110 VQVDNPFIVGVVRAYRGSDSDNRQLRFATVGTTAEIRQYRRLEDGSLNVVTRGQQRFHLK 169

Query: 179 RRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNL-SQSLSHTLPSNSSSRGYGIR 237
            RWIDVEG+PCGE+QIIQED+PLRTP+D F  L  +SNL S  LS  LPS     GYG  
Sbjct: 170 HRWIDVEGMPCGEVQIIQEDIPLRTPKDAFGKLAPLSNLRSHRLSRVLPS----LGYGHS 225

Query: 238 DNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPH 297
           DNDS+A S++SFE+ LS    R HQS +D  YG D+MDESTSSDDDK   Q++++S R H
Sbjct: 226 DNDSEANSDDSFENALSSAGMRTHQSALDSCYGYDVMDESTSSDDDKFLSQTEMRSTRSH 285

Query: 298 LNDSDS---IGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN-ELSQFRRTSRAFLP 353
           LN+S         K ++N  L IG SS L +   +GEGSK CW+N +L+ F R  RAF P
Sbjct: 286 LNESKGPLYSDTGKNADNTTLEIGNSSDLAK---KGEGSKRCWKNTDLNHFHRVPRAFWP 342

Query: 354 HWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEI 413
           HWVYRMYDSYCLA+RAAD WKQIVG P+MDGLV+KPDLLSFYIASKIPVSE TRQELLEI
Sbjct: 343 HWVYRMYDSYCLAERAADMWKQIVGAPSMDGLVRKPDLLSFYIASKIPVSEETRQELLEI 402

Query: 414 DGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTL 473
           DG+SYRLRREI LLESFDLV+CKTCKT IA+RSDMLVMS+EGPLGAYVN HG VHEI+TL
Sbjct: 403 DGISYRLRREIGLLESFDLVQCKTCKTVIAQRSDMLVMSTEGPLGAYVNSHGYVHEIMTL 462

Query: 474 NKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQV 533
            KANGLAL G A  EYSWFPGYAWT+A C+ CET MGWLFTATKKKLKP+SFWGIRSSQV
Sbjct: 463 QKANGLALIGRATVEYSWFPGYAWTIAECASCETQMGWLFTATKKKLKPQSFWGIRSSQV 522

Query: 534 AEGT 537
           A+ T
Sbjct: 523 ADDT 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550958|ref|XP_002516527.1| ATP-dependent peptidase, putative [Ricinus communis] gi|223544347|gb|EEF45868.1| ATP-dependent peptidase, putative [Ricinus communis]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/552 (67%), Positives = 437/552 (79%), Gaps = 18/552 (3%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLA 60
           M +D ++E ER QI QIR+L+FEELQVEEV+D  +SS DD+  A GA SS +  F+TCLA
Sbjct: 1   MDEDGMMEAERYQIAQIRELEFEELQVEEVEDDDNSSSDDELNAIGATSSGEFAFNTCLA 60

Query: 61  SLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERAL 120
            LHTYLG+VEDTH R +FLEGGA+LTLPLFYL+GVVLFP A LPLRVI+PNFI+A ERAL
Sbjct: 61  PLHTYLGEVEDTHRRFSFLEGGAVLTLPLFYLEGVVLFPGAILPLRVIQPNFISAVERAL 120

Query: 121 SQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRR 180
           +QVD P+TIGVVR +R+ DNGR+ FATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRR
Sbjct: 121 TQVDAPHTIGVVRAYRDRDNGRLRFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRR 180

Query: 181 WIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQ---------SLSHTLPSNSSS 231
           WIDVEGVPCG++QIIQEDLPLR+P+  F  +  +  L           S S+T+PSN SS
Sbjct: 181 WIDVEGVPCGKVQIIQEDLPLRSPQGAFGKIKPLRTLDSRNVSDAVPSSASYTVPSNISS 240

Query: 232 RGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDI 291
             +G  DNDS+A SEESFESELSP ERRIHQS I      D+MD+  SSDD K  F S I
Sbjct: 241 DAHGDDDNDSEANSEESFESELSPAERRIHQSAISSCCSHDMMDDLASSDDGK--FDSQI 298

Query: 292 QSRRPHLNDSDS-----IGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN-ELSQFR 345
           +  R HL DSDS     + + ++ +   L     +   +Q H+GEGSK CW+N +LSQFR
Sbjct: 299 KVTRSHLADSDSNESLHLNHEREMDKTVLATVYFTP-KKQCHKGEGSKSCWKNTDLSQFR 357

Query: 346 RTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSES 405
           R   AF P WVYRMYDSYCLA+RAAD W+QIVG PN+D LVKKPDLLSFYIASKIPVSES
Sbjct: 358 RVPTAFWPFWVYRMYDSYCLAERAADMWRQIVGAPNVDSLVKKPDLLSFYIASKIPVSES 417

Query: 406 TRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHG 465
           TRQELLEIDG+SYRL REI+LL+SFDLVRCK C++ IA+RSDMLVMSSEGPLGAYVNPHG
Sbjct: 418 TRQELLEIDGISYRLHREIDLLKSFDLVRCKKCQSVIARRSDMLVMSSEGPLGAYVNPHG 477

Query: 466 CVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSF 525
            VHEI+T  KAN LAL+G A  EYSWFPGYAWT+ SC+ CE+ MGWLFTATKKKL+P+SF
Sbjct: 478 FVHEIMTFYKANDLALHGRAVKEYSWFPGYAWTITSCANCESQMGWLFTATKKKLQPRSF 537

Query: 526 WGIRSSQVAEGT 537
           W IRS+QVA+ T
Sbjct: 538 WAIRSAQVADDT 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475968|ref|XP_002277719.2| PREDICTED: protein cereblon-like [Vitis vinifera]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/543 (67%), Positives = 426/543 (78%), Gaps = 11/543 (2%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLA 60
           M  D LLERER QI+QIR+L+FEELQ+EEVDD ++S DD   AATGA SS++ TFDTCLA
Sbjct: 1   MDRDSLLERERYQIQQIRELEFEELQIEEVDDLNESDDD---AATGAASSSEFTFDTCLA 57

Query: 61  SLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERAL 120
           SLHTYLG+VEDTH+R+AFL+GGA+  LPLFYL+G VLFPEATLPLRVIK NF+AA E+AL
Sbjct: 58  SLHTYLGEVEDTHHRLAFLDGGAVWALPLFYLEGAVLFPEATLPLRVIKSNFVAAVEKAL 117

Query: 121 SQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRR 180
            Q D PYTIGVV V R+PD+GRI F+TIGTTAEIRQYRRLED SLNVVTRGQQRF LRR 
Sbjct: 118 HQADAPYTIGVVHVERDPDSGRIRFSTIGTTAEIRQYRRLEDHSLNVVTRGQQRFHLRRG 177

Query: 181 WIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNL-SQSLSHTLPSNSSSRG---YGI 236
           WID +GVP GE+QIIQEDLPLRTPRD F  L  +SNL S S  HT  SN+S      YG 
Sbjct: 178 WIDDDGVPYGEVQIIQEDLPLRTPRDAFGKLAPLSNLRSFSHPHTSQSNTSHAKRPRYGD 237

Query: 237 RDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRP 296
           +D+ S++ SEESF+SELS  E R+H+S ID  YG D +DESTSSDDDK   +S++Q  R 
Sbjct: 238 KDSASESNSEESFDSELSLAEMRMHRSAIDSCYGYDTIDESTSSDDDKFVCESELQLGRS 297

Query: 297 HLND---SDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWR-NELSQFRRTSRAFL 352
           HLN+   S  +   ++++   L I   S  G QS +G+G K      +L+Q     RAF 
Sbjct: 298 HLNEPIGSMHLDCERRNKKANLGIRNKSISGSQSCKGKGLKEGQMVTKLNQSYGVPRAFW 357

Query: 353 PHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLE 412
           P+WVYRMYDSY LAQRAA  WKQIVG P+MD LVKKPDLLSF+I SKIP+SES RQELLE
Sbjct: 358 PYWVYRMYDSYHLAQRAAGMWKQIVGAPSMDELVKKPDLLSFHIGSKIPLSESIRQELLE 417

Query: 413 IDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILT 472
           IDG SYRLRREIELLESFD +RCK C+T IAKRSDML+MSSEGPLGAYVNP G VHEI+T
Sbjct: 418 IDGTSYRLRREIELLESFDRIRCKNCQTVIAKRSDMLMMSSEGPLGAYVNPGGYVHEIMT 477

Query: 473 LNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQ 532
           L KANGLAL G    EYSWFPGYAWT+++C+ CET MGWLFTAT KKLKP  FWGIRSSQ
Sbjct: 478 LYKANGLALTGRPIKEYSWFPGYAWTISNCATCETQMGWLFTATNKKLKPSLFWGIRSSQ 537

Query: 533 VAE 535
           VA+
Sbjct: 538 VAD 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081564|emb|CBI20569.3| unnamed protein product [Vitis vinifera]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/545 (67%), Positives = 424/545 (77%), Gaps = 10/545 (1%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDD--DDRAATGADSSNQLTFDTC 58
           M  D LLERER QI+QIR+L+FEELQ+EEVDD ++S DD   D    GA SS++ TFDTC
Sbjct: 1   MDRDSLLERERYQIQQIRELEFEELQIEEVDDLNESDDDAATDHGYRGAASSSEFTFDTC 60

Query: 59  LASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAER 118
           LASLHTYLG+VEDTH+R+AFL+GGA+  LPLFYL+G VLFPEATLPLRVIK NF+AA E+
Sbjct: 61  LASLHTYLGEVEDTHHRLAFLDGGAVWALPLFYLEGAVLFPEATLPLRVIKSNFVAAVEK 120

Query: 119 ALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLR 178
           AL Q D PYTIGVV V R+PD+GRI F+TIGTTAEIRQYRRLED SLNVVTRGQQRF LR
Sbjct: 121 ALHQADAPYTIGVVHVERDPDSGRIRFSTIGTTAEIRQYRRLEDHSLNVVTRGQQRFHLR 180

Query: 179 RRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNL-SQSLSHTLPSNSSSRG---Y 234
           R WID +GVP GE+QIIQEDLPLRTPRD F  L  +SNL S S  HT  SN+S      Y
Sbjct: 181 RGWIDDDGVPYGEVQIIQEDLPLRTPRDAFGKLAPLSNLRSFSHPHTSQSNTSHAKRPRY 240

Query: 235 GIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSR 294
           G +D+ S++ SEESF+SELS  E R+H+S ID  YG D +DESTSSDDDK   +S++Q  
Sbjct: 241 GDKDSASESNSEESFDSELSLAEMRMHRSAIDSCYGYDTIDESTSSDDDKFVCESELQLG 300

Query: 295 RPHLND---SDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWR-NELSQFRRTSRA 350
           R HLN+   S  +   ++++   L I   S  G QS +G+G K      +L+Q     RA
Sbjct: 301 RSHLNEPIGSMHLDCERRNKKANLGIRNKSISGSQSCKGKGLKEGQMVTKLNQSYGVPRA 360

Query: 351 FLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQEL 410
           F P+WVYRMYDSY LAQRAA  WKQIVG P+MD LVKKPDLLSF+I SKIP+SES RQEL
Sbjct: 361 FWPYWVYRMYDSYHLAQRAAGMWKQIVGAPSMDELVKKPDLLSFHIGSKIPLSESIRQEL 420

Query: 411 LEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEI 470
           LEIDG SYRLRREIELLESFD +RCK C+T IAKRSDML+MSSEGPLGAYVNP G VHEI
Sbjct: 421 LEIDGTSYRLRREIELLESFDRIRCKNCQTVIAKRSDMLMMSSEGPLGAYVNPGGYVHEI 480

Query: 471 LTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRS 530
           +TL KANGLAL G    EYSWFPGYAWT+++C+ CET MGWLFTAT KKLKP  FWGIRS
Sbjct: 481 MTLYKANGLALTGRPIKEYSWFPGYAWTISNCATCETQMGWLFTATNKKLKPSLFWGIRS 540

Query: 531 SQVAE 535
           SQVA+
Sbjct: 541 SQVAD 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436307|ref|XP_003588429.1| Protein cereblon [Medicago truncatula] gi|355477477|gb|AES58680.1| Protein cereblon [Medicago truncatula]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/543 (66%), Positives = 417/543 (76%), Gaps = 26/543 (4%)

Query: 13  QIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADS----------SNQLTFDTCLASL 62
           QIEQI QLD EELQVEEVD FHDSSDDD+     A+             + T++TC+ASL
Sbjct: 21  QIEQILQLDLEELQVEEVDVFHDSSDDDNNNNNHANPIPGYGTAGVVPGEFTYNTCIASL 80

Query: 63  HTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQ 122
           HTYLGDVEDTH+R  FL+GG +LTLP+F L GVVLFP ATLPLRVI+ NF+AA E++LS+
Sbjct: 81  HTYLGDVEDTHHRSTFLDGGTVLTLPIFCLQGVVLFPGATLPLRVIESNFVAAVEKSLSR 140

Query: 123 VDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWI 182
           VDVPYTIGV+RVF +  N R+  A+IGTTAEIRQY RLEDGSLNVVTRGQQRFRLRR WI
Sbjct: 141 VDVPYTIGVIRVFSDTANRRMKTASIGTTAEIRQYGRLEDGSLNVVTRGQQRFRLRRCWI 200

Query: 183 DVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSD 242
           DVEGVP GEIQII+ED+P RTPRD F  L  +SNL  + +  LPS  S  G G  + +SD
Sbjct: 201 DVEGVPYGEIQIIEEDIPSRTPRDAFGKLTPLSNLPCNRASVLPSKYSVDGQGSLNEESD 260

Query: 243 ATSEESFESELSPTERRIHQSVI--DFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLND 300
             +EESFE+ELS TERRIHQS+I   F Y     DES SS DDK  ++SD Q  R +LN 
Sbjct: 261 --TEESFENELSSTERRIHQSLIRSSFEY-----DESASSGDDKFTYESD-QEIRSNLNT 312

Query: 301 SDSIG-----NWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN-ELSQFRRTSRAFLPH 354
            D++      + K +EN+  RIG  S  G+QS   EG   C +N +L   RRTSRAFLP 
Sbjct: 313 PDTLTPLLPDHEKDAENLDSRIGSCSTSGKQSSIREGLNWCSKNRDLYSSRRTSRAFLPG 372

Query: 355 WVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEID 414
           WVYRM+DSY LAQ+AAD WKQIVG P+MD LVKKPD+LSF IASKIPVSESTRQELL+ID
Sbjct: 373 WVYRMFDSYLLAQKAADMWKQIVGAPSMDALVKKPDVLSFSIASKIPVSESTRQELLDID 432

Query: 415 GVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLN 474
           G+SYRLRREIELLES DL+RCK C+  IAKRSDMLVMSSEGP+GAYVN  G VHEI TL 
Sbjct: 433 GISYRLRREIELLESIDLIRCKICQIIIAKRSDMLVMSSEGPVGAYVNATGYVHEITTLY 492

Query: 475 KANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQVA 534
           KANGLAL GPA T+YSWFPGYAWT+A+C+ CETHMGWLFTAT +KLKPKSFWGIR+ QVA
Sbjct: 493 KANGLALTGPALTKYSWFPGYAWTIANCATCETHMGWLFTATNRKLKPKSFWGIRNCQVA 552

Query: 535 EGT 537
           + T
Sbjct: 553 DET 555

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461333|ref|XP_004148396.1| PREDICTED: protein cereblon-like [Cucumis sativus]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/553 (63%), Positives = 412/553 (74%), Gaps = 24/553 (4%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAAT------GADSSNQLT 54
           M D RLLERER QIEQI QLD EELQVEEVD  HDS DDD+          G ++  + T
Sbjct: 1   MEDQRLLERERHQIEQILQLDNEELQVEEVDYLHDSDDDDNDDRDAINGHGGTEAFPEFT 60

Query: 55  FDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIA 114
           F++ LASLHTYLG+VED H+RMAFL+GGAIL LP+FYL+GVVLFPEATLPLRVI+ NFIA
Sbjct: 61  FNSSLASLHTYLGEVEDAHHRMAFLDGGAILNLPVFYLEGVVLFPEATLPLRVIQSNFIA 120

Query: 115 AAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQR 174
           A ER L+  D P TIGVV V  + D+ R+ FA IGTTAEIRQ+RRLEDGSLNV+ RG+QR
Sbjct: 121 AIERVLTHFDTPNTIGVVHVSLDSDSERLRFANIGTTAEIRQFRRLEDGSLNVLARGKQR 180

Query: 175 FRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLS-QSLSHTLPSNS-SSR 232
           FRLRRRWIDVEGVPCGE+QIIQEDLPLR PRD F  L   S +    LS  L S +  SR
Sbjct: 181 FRLRRRWIDVEGVPCGEVQIIQEDLPLRAPRDAFGELAPRSTVQRHGLSCALASYTPCSR 240

Query: 233 GYGIRD--NDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSD 290
            +  RD  +DS + SEESFE ELS  E++IH + ID +  C        SD++ S  +++
Sbjct: 241 SFTSRDEEDDSASNSEESFERELSLREKKIHNAAIDSSESC--------SDEEMSGSEAE 292

Query: 291 IQSRRPHLNDSDSIGNW-----KQSENVGLRIGKSSALGRQSHRGEGSKMCWRNE-LSQF 344
            Q    HLNDSDS+G+      K++E     IGKSS   R+S   +  K C RN   +  
Sbjct: 293 HQHSMSHLNDSDSLGSMHSDCEKENEKPASDIGKSSTSARESSESKELKRCRRNSSFNPM 352

Query: 345 RRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSE 404
            R S+AF P+WVY MYDSYCLAQ+AA  WKQIVG PNMDG VK PD+LSFYIASKIPVSE
Sbjct: 353 HRVSKAFWPYWVYSMYDSYCLAQKAAAMWKQIVGAPNMDGFVKNPDILSFYIASKIPVSE 412

Query: 405 STRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH 464
           STRQELLEIDG+SYRLRREIELL+S D+++CK CKT IAK SDMLVM +EGP GAYVNPH
Sbjct: 413 STRQELLEIDGISYRLRREIELLKSIDIIQCKNCKTVIAKHSDMLVMPNEGPFGAYVNPH 472

Query: 465 GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKS 524
           G VHEI+TL +ANGLAL G A+TEYSWFPGYAWT++ C+ CET +GWLFTAT + LKPKS
Sbjct: 473 GYVHEIMTLYRANGLALRGRAQTEYSWFPGYAWTISICATCETQLGWLFTATNRNLKPKS 532

Query: 525 FWGIRSSQVAEGT 537
           FWGIR SQ+A+ T
Sbjct: 533 FWGIRCSQLADAT 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515456|ref|XP_004164765.1| PREDICTED: LOW QUALITY PROTEIN: protein cereblon-like [Cucumis sativus]

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/553 (63%), Positives = 411/553 (74%), Gaps = 24/553 (4%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAAT------GADSSNQLT 54
           M D RLLERER QIEQI QLD EELQVEEVD  HDS DDD+          G ++  + T
Sbjct: 1   MEDQRLLERERHQIEQILQLDNEELQVEEVDYLHDSDDDDNDDRDAINGHGGTEAFPEFT 60

Query: 55  FDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIA 114
           F++ LASLHTYLG+VED H+RMAFL+GGAIL LP+FYL+GVVLFPEATLPLRVI+ NFIA
Sbjct: 61  FNSSLASLHTYLGEVEDAHHRMAFLDGGAILNLPVFYLEGVVLFPEATLPLRVIQSNFIA 120

Query: 115 AAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQR 174
           A ER L+  D P TIGVV V  + D+ R+ FA IGTTAEIRQ+RRLEDGSLNV+ RG+QR
Sbjct: 121 AIERVLTHFDTPNTIGVVHVSLDSDSERLRFANIGTTAEIRQFRRLEDGSLNVLARGKQR 180

Query: 175 FRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLS-QSLSHTLPSNS-SSR 232
           FRLRRRWIDVEGVPCGE+QIIQEDLPLR PRD F  L   S +    LS  L S +  SR
Sbjct: 181 FRLRRRWIDVEGVPCGEVQIIQEDLPLRAPRDAFGELAPRSTVQRHGLSCALASYTPCSR 240

Query: 233 GYGIRD--NDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSD 290
            +  RD  +DS + SEESFE ELS  E++IH + ID +  C        SD++ S  +++
Sbjct: 241 SFTSRDEEDDSASNSEESFERELSLREKKIHNAAIDSSESC--------SDEEMSGSEAE 292

Query: 291 IQSRRPHLNDSDSIGNW-----KQSENVGLRIGKSSALGRQSHRGEGSKMCWRNE-LSQF 344
            Q    HLNDSDS+G+      K++E     IGKSS   R+S   +  K C RN   +  
Sbjct: 293 HQHSMSHLNDSDSLGSMHSDCEKENEKPASDIGKSSTSARESSESKELKRCRRNSSFNPM 352

Query: 345 RRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSE 404
            R S+AF P+WVY MYDSYCLAQ+AA  WKQIVG PNMDG VK PD+LSFYIASKIPVSE
Sbjct: 353 HRVSKAFWPYWVYSMYDSYCLAQKAAAMWKQIVGAPNMDGFVKNPDILSFYIASKIPVSE 412

Query: 405 STRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH 464
           STRQELLEIDG+SYRLRREIELL+S D+++CK CKT IAK SDMLVM +EGP GAYVNPH
Sbjct: 413 STRQELLEIDGISYRLRREIELLKSIDIIQCKNCKTVIAKHSDMLVMPNEGPFGAYVNPH 472

Query: 465 GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKS 524
           G VHEI+TL +ANGLAL G A+TEYSWFPGYAWT++ C+ CET +GWLFTAT + LKP S
Sbjct: 473 GYVHEIMTLYRANGLALRGRAQTEYSWFPGYAWTISICATCETQLGWLFTATNRNLKPXS 532

Query: 525 FWGIRSSQVAEGT 537
           FWGIR SQ+A+ T
Sbjct: 533 FWGIRCSQLADAT 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821997|ref|XP_002878881.1| ATP-dependent protease La domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324720|gb|EFH55140.1| ATP-dependent protease La domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/553 (58%), Positives = 397/553 (71%), Gaps = 32/553 (5%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSD-----------DDDRAATGADS 49
           M D+R+ ERER QIEQIR+LDFEELQVEEVDD HDS                  A+G   
Sbjct: 1   MDDERIRERERLQIEQIRELDFEELQVEEVDDLHDSDSDDNDHLSSFPFSSHAQASGNFG 60

Query: 50  SNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIK 109
            ++L F+  LASLH YLG+VEDT NR+AF++GG +L +PLFYL+GVVLFPEATLPLR+++
Sbjct: 61  DDELIFNPALASLHMYLGEVEDTQNRIAFVDGGTVLKIPLFYLEGVVLFPEATLPLRIVQ 120

Query: 110 PNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVT 169
           P+F+AA ERAL+Q + P TIGV+RV+RE    +  +A++GTTAEIRQYRRL DGS NV+T
Sbjct: 121 PSFLAAVERALNQANAPSTIGVIRVYRE--GAQFKYASVGTTAEIRQYRRLGDGSFNVIT 178

Query: 170 RGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSNS 229
           RGQQRFRL+RRW DVEG PCGE+QI+ ED+PLRTPRD F  L  +S L        P ++
Sbjct: 179 RGQQRFRLKRRWTDVEGFPCGEVQIVDEDVPLRTPRDAFGKLVPISKLQARY----PLST 234

Query: 230 SSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQS 289
            S    +RD   +A SEESFES LSP+E+R+H SV+D      I   STSSDDD+    S
Sbjct: 235 VSLSTPLRD--MEANSEESFESALSPSEKRLHYSVVD-----SIFCNSTSSDDDQVVGTS 287

Query: 290 DIQSRRPHLNDSDSIGNWKQS-----ENVGLRIGKSSALGRQSHRGEGSKMCWR--NELS 342
            +QS   +   S SIG    S     E     IGK+  + ++ ++ +     +R   +LS
Sbjct: 288 TVQSSGSNPYSSRSIGYLASSHDDENEEEQSTIGKT-PVSQEKYQKQNRLASFRESTDLS 346

Query: 343 QFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPV 402
           +FR T RAF P W YRMYDSY L+QRAAD WKQIVG PNM+  V KP++LSF IASKIPV
Sbjct: 347 RFRMTPRAFWPFWAYRMYDSYYLSQRAADLWKQIVGVPNMEAFVNKPNILSFSIASKIPV 406

Query: 403 SESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVN 462
           SES RQELLE+DGVSYRL+REIELLESFD VRC  C+T IA+R DMLVMS+EGPLGAYVN
Sbjct: 407 SESIRQELLELDGVSYRLQREIELLESFDRVRCIHCQTVIARRKDMLVMSNEGPLGAYVN 466

Query: 463 PHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKP 522
           PHG VHEI+T  KAN +AL G    + SWFPGYAWT+A+C+ CET +GWLFTAT KKLKP
Sbjct: 467 PHGYVHEIMTFYKANDIALRGRPVKKDSWFPGYAWTIANCATCETQLGWLFTATNKKLKP 526

Query: 523 KSFWGIRSSQVAE 535
            SFW +R SQVA+
Sbjct: 527 SSFWAVRGSQVAD 539

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682884|ref|NP_850069.1| cereblon [Arabidopsis thaliana] gi|59958328|gb|AAX12874.1| At2g25740 [Arabidopsis thaliana] gi|330252653|gb|AEC07747.1| cereblon [Arabidopsis thaliana]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 322/556 (57%), Positives = 397/556 (71%), Gaps = 33/556 (5%)

Query: 1   MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSD------------DDDRAATGAD 48
           M D+R+ ERER QIEQIR+LDFEELQVEEVDD HDS                   A+G  
Sbjct: 1   MDDERIRERERLQIEQIRELDFEELQVEEVDDLHDSDSDDNNDDLSSFPFSSHAQASGNL 60

Query: 49  SSNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVI 108
             ++L F+  LASLH YLG+VEDT NR++F++GG +L +PLFYL+GVVLFPEATLPLR+I
Sbjct: 61  GDDELMFNPALASLHMYLGEVEDTQNRVSFVDGGTVLKIPLFYLEGVVLFPEATLPLRII 120

Query: 109 KPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVV 168
           +P+F+AA ERAL+Q + P TIGV+RV+RE    +  +A++GTTAEIRQYRRL DGS NV+
Sbjct: 121 QPSFLAAVERALNQANAPSTIGVIRVYRE--GAQFKYASVGTTAEIRQYRRLGDGSFNVI 178

Query: 169 TRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSN 228
           TRGQQRFRL+ RW DVEG  CGE+QI+ ED+PLRTPRD F  L  +S L        P  
Sbjct: 179 TRGQQRFRLKHRWTDVEGFTCGEVQIVDEDVPLRTPRDAFGKLVPLSKLR----GRYPLG 234

Query: 229 SSSRGYGIRDND--SDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSA 286
           ++S    +RD D  S+A SEESFES LSP+E+R+H SV+D      I   STSSDDD+  
Sbjct: 235 TASLSTPLRDMDAQSEANSEESFESALSPSEKRLHYSVVD-----SIFCNSTSSDDDQVV 289

Query: 287 FQSDIQSRRPHLNDSDSIG-----NWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN-- 339
             S +QS   +     SIG     +  ++E+    IGK+  + ++ ++ +     +R   
Sbjct: 290 STSTVQSSGSNPYSLRSIGCLASSHDNENEDEQSAIGKT-PVSQEKYQKQNRLASFRQNT 348

Query: 340 ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASK 399
           +LS+FR T RAF P W YRM+DSY LAQRA D WKQIVG PNM+  V KPD+LSF IASK
Sbjct: 349 DLSRFRMTPRAFWPFWAYRMFDSYYLAQRAVDLWKQIVGVPNMEAFVNKPDILSFSIASK 408

Query: 400 IPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGA 459
           IPVSES RQELLE+DGVSYRL+REIELLESFD VRC  C+T IA+R DMLVMS+EGPLGA
Sbjct: 409 IPVSESIRQELLELDGVSYRLQREIELLESFDRVRCIHCQTVIARRKDMLVMSNEGPLGA 468

Query: 460 YVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKK 519
           YVNPHG VHEI+T  KAN +AL G    + SWFPGYAWT+A+C+ CET +GW FTAT KK
Sbjct: 469 YVNPHGYVHEIMTFYKANDIALRGRPVKKDSWFPGYAWTIANCATCETQLGWHFTATNKK 528

Query: 520 LKPKSFWGIRSSQVAE 535
           LKP SFW +R SQVA+
Sbjct: 529 LKPSSFWAVRGSQVAD 544

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
TAIR|locus:2043500	547	AT2G25740 [Arabidopsis thalian	0.934	0.919	0.541	4.3e-141
ZFIN|ZDB-GENE-040822-43	446	crbn "cereblon" [Danio rerio (	0.368	0.443	0.39	3.2e-52
UNIPROTKB|Q5R6Y2	429	CRBN "Protein cereblon" [Pongo	0.381	0.477	0.386	9.8e-50
UNIPROTKB|Q96SW2	442	CRBN "Protein cereblon" [Homo	0.381	0.463	0.386	1.3e-49
UNIPROTKB|Q0P564	444	CRBN "Protein cereblon" [Bos t	0.362	0.439	0.385	2.6e-49
MGI|MGI:1913277	445	Crbn "cereblon" [Mus musculus	0.362	0.438	0.385	1.8e-48
RGD|1310533	445	Crbn "cereblon" [Rattus norveg	0.362	0.438	0.385	1.8e-48
UNIPROTKB|P0CF65	445	CRBN "Protein cereblon" [Gallu	0.362	0.438	0.390	2.3e-48
UNIPROTKB|F1P3S5	425	CRBN "Protein cereblon" [Gallu	0.362	0.458	0.386	2.6e-47
UNIPROTKB|Q640S2	447	crbn "Protein cereblon" [Xenop	0.381	0.458	0.384	5.3e-47

TAIR|locus:2043500 AT2G25740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 290/536 (54%), Positives = 360/536 (67%)

Query:    21 DFEELQVEEVXXXXXXXX------------XXXXXXXXXXXXNQLTFDTCLASLHTYLGD 68
             DFEELQVEEV                                ++L F+  LASLH YLG+
Sbjct:    21 DFEELQVEEVDDLHDSDSDDNNDDLSSFPFSSHAQASGNLGDDELMFNPALASLHMYLGE 80

Query:    69 VEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYT 128
             VEDT NR++F++GG +L +PLFYL+GVVLFPEATLPLR+I+P+F+AA ERAL+Q + P T
Sbjct:    81 VEDTQNRVSFVDGGTVLKIPLFYLEGVVLFPEATLPLRIIQPSFLAAVERALNQANAPST 140

Query:   129 IGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTXXXXXXXXXXXWIDVEGVP 188
             IGV+RV+RE    +  +A++GTTAEIRQYRRL DGS NV+T           W DVEG  
Sbjct:   141 IGVIRVYRE--GAQFKYASVGTTAEIRQYRRLGDGSFNVITRGQQRFRLKHRWTDVEGFT 198

Query:   189 CGEIQIIQEDLPLRTPRDVFETLGCVSNLXXXXXXXXXXXXXXRGYGIRDND--SDATSE 246
             CGE+QI+ ED+PLRTPRD F  L  +S L                  +RD D  S+A SE
Sbjct:   199 CGEVQIVDEDVPLRTPRDAFGKLVPLSKLRGRYPLGTASLSTP----LRDMDAQSEANSE 254

Query:   247 ESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIG- 305
             ESFES LSP+E+R+H SV+D  + C+    STSSDDD+    S +QS   +     SIG 
Sbjct:   255 ESFESALSPSEKRLHYSVVDSIF-CN----STSSDDDQVVSTSTVQSSGSNPYSLRSIGC 309

Query:   306 ----NWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN--ELSQFRRTSRAFLPHWVYRM 359
                 +  ++E+    IGK+  + ++ ++ +     +R   +LS+FR T RAF P W YRM
Sbjct:   310 LASSHDNENEDEQSAIGKTP-VSQEKYQKQNRLASFRQNTDLSRFRMTPRAFWPFWAYRM 368

Query:   360 YDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYR 419
             +DSY LAQRA D WKQIVG PNM+  V KPD+LSF IASKIPVSES RQELLE+DGVSYR
Sbjct:   369 FDSYYLAQRAVDLWKQIVGVPNMEAFVNKPDILSFSIASKIPVSESIRQELLELDGVSYR 428

Query:   420 LRREIELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGL 479
             L+REIELLESFD VRC  C+T IA+R DMLVMS+EGPLGAYVNPHG VHEI+T  KAN +
Sbjct:   429 LQREIELLESFDRVRCIHCQTVIARRKDMLVMSNEGPLGAYVNPHGYVHEIMTFYKANDI 488

Query:   480 ALYGPAETEYSWFPGYAWTVASCSICETHMGWLFTATKKKLKPKSFWGIRSSQVAE 535
             AL G    + SWFPGYAWT+A+C+ CET +GW FTAT KKLKP SFW +R SQVA+
Sbjct:   489 ALRGRPVKKDSWFPGYAWTIANCATCETQLGWHFTATNKKLKPSSFWAVRGSQVAD 544

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

ZFIN|ZDB-GENE-040822-43 crbn "cereblon" [Danio rerio (taxid:7955)]

 Score = 396 (144.5 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
 Identities = 78/200 (39%), Positives = 113/200 (56%)

Query:   334 KMCWRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLL 392
             K C +N    +    S    P WVY +YDS  L  R   +  +       + L   P   
Sbjct:   226 KRCSQNYRQKKLHCASMTSWPPWVYSLYDSKTLMSRVKKQLHEWDENLKDESLPTNPTDF 285

Query:   393 SFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVM 451
             S+ +A+ +P+ ++ R +LL+I     RLR E+++++    + CK C+ T I  ++++  +
Sbjct:   286 SYRVAACLPIDDALRLQLLKIGSAIQRLRCELDIMDRCTSLCCKQCQDTEITSKNEIFSL 345

Query:   452 SSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGW 511
             S  GP+ AYVNPHG VHE LT+ KA+ L L G   T +SWFPGYAWT+A C  C +HMGW
Sbjct:   346 SLYGPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTLHSWFPGYAWTIAQCRTCSSHMGW 405

Query:   512 LFTATKKKLKPKSFWGIRSS 531
              F+A KK L P  FWG+  S
Sbjct:   406 KFSAVKKDLSPPRFWGLTRS 425

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0035118 "embryonic pectoral fin morphogenesis" evidence=IMP

GO:0071600 "otic vesicle morphogenesis" evidence=IMP

GO:0060173 "limb development" evidence=IMP

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

UNIPROTKB|Q5R6Y2 CRBN "Protein cereblon" [Pongo abelii (taxid:9601)]

 Score = 404 (147.3 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 80/207 (38%), Positives = 118/207 (57%)

Query:   327 SHRGEGSKMCWRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGL 385
             S   + S   W+  +  +F   +    P W+Y +YD+  L  R   + ++       D L
Sbjct:   201 SREDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSL 260

Query:   386 VKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAK 444
                P   S+ +A+ +P+ +  R +LL+I     RLR E++++     + CK C+ T I  
Sbjct:   261 PSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITT 320

Query:   445 RSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSI 504
             ++++  +S  GP+ AYVNPHG VHE LT+ KA  L L G   TE+SWFPGYAWTVA C I
Sbjct:   321 KNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKI 380

Query:   505 CETHMGWLFTATKKKLKPKSFWGIRSS 531
             C +H+GW FTATKK + P+ FWG+  S
Sbjct:   381 CASHIGWKFTATKKDMSPQKFWGLTRS 407

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|Q96SW2 CRBN "Protein cereblon" [Homo sapiens (taxid:9606)]

 Score = 404 (147.3 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 80/207 (38%), Positives = 118/207 (57%)

Query:   327 SHRGEGSKMCWRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGL 385
             S   + S   W+  +  +F   +    P W+Y +YD+  L  R   + ++       D L
Sbjct:   214 SREDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSL 273

Query:   386 VKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAK 444
                P   S+ +A+ +P+ +  R +LL+I     RLR E++++     + CK C+ T I  
Sbjct:   274 PSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITT 333

Query:   445 RSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSI 504
             ++++  +S  GP+ AYVNPHG VHE LT+ KA  L L G   TE+SWFPGYAWTVA C I
Sbjct:   334 KNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKI 393

Query:   505 CETHMGWLFTATKKKLKPKSFWGIRSS 531
             C +H+GW FTATKK + P+ FWG+  S
Sbjct:   394 CASHIGWKFTATKKDMSPQKFWGLTRS 420

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0032463 "negative regulation of protein homooligomerization" evidence=IEA

GO:0034766 "negative regulation of ion transmembrane transport" evidence=IEA

GO:0090073 "positive regulation of protein homodimerization activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q0P564 CRBN "Protein cereblon" [Bos taurus (taxid:9913)]

 Score = 403 (146.9 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 76/197 (38%), Positives = 116/197 (58%)

Query:   337 WRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFY 395
             W+  +  +F   +    P W+Y +YD+  L  R   + ++       D L   P   S+ 
Sbjct:   226 WQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYR 285

Query:   396 IASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSE 454
             +A+ +P+ +  R +LL+I     RLR E++++     + CK C+ T I  ++++  +S  
Sbjct:   286 VAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLC 345

Query:   455 GPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFT 514
             GP+ AYVNPHG VHE LT+ KA+ L L G   T++SWFPGYAWT+A C IC +H+GW FT
Sbjct:   346 GPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTDHSWFPGYAWTIAQCRICASHIGWKFT 405

Query:   515 ATKKKLKPKSFWGIRSS 531
             ATKK + P+ FWG+  S
Sbjct:   406 ATKKDMSPQKFWGLTRS 422

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

MGI|MGI:1913277 Crbn "cereblon" [Mus musculus (taxid:10090)]

 Score = 400 (145.9 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 76/197 (38%), Positives = 116/197 (58%)

Query:   337 WRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFY 395
             W+  +  +F   +    P W+Y +YD+  L  R   + ++       D L + P   S+ 
Sbjct:   227 WQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPENPIDFSYR 286

Query:   396 IASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSE 454
             +A+ +P+ +  R +LL+I     RLR E++++     + CK C+ T I  ++++  +S  
Sbjct:   287 VAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLC 346

Query:   455 GPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFT 514
             GP+ AYVNPHG VHE LT+ KA+ L L G   T +SWFPGYAWT+A C IC +H+GW FT
Sbjct:   347 GPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFT 406

Query:   515 ATKKKLKPKSFWGIRSS 531
             ATKK + P+ FWG+  S
Sbjct:   407 ATKKDMSPQKFWGLTRS 423

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO

GO:0032463 "negative regulation of protein homooligomerization" evidence=ISO

GO:0034766 "negative regulation of ion transmembrane transport" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0090073 "positive regulation of protein homodimerization activity" evidence=ISO

RGD|1310533 Crbn "cereblon" [Rattus norvegicus (taxid:10116)]

 Score = 399 (145.5 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 76/197 (38%), Positives = 115/197 (58%)

Query:   337 WRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFY 395
             W+  +  +F   +    P W+Y +YD+  L  R   + ++       D L   P   S+ 
Sbjct:   227 WQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPANPIDFSYR 286

Query:   396 IASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSE 454
             +A+ +P+ +  R +LL+I     RLR E++++     + CK C+ T I  ++++  +S  
Sbjct:   287 VAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLC 346

Query:   455 GPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFT 514
             GP+ AYVNPHG VHE LT+ KA+ L L G   T +SWFPGYAWT+A C IC +H+GW FT
Sbjct:   347 GPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFT 406

Query:   515 ATKKKLKPKSFWGIRSS 531
             ATKK + P+ FWG+  S
Sbjct:   407 ATKKDMSPQKFWGLTRS 423

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISO;ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO;ISS

GO:0032463 "negative regulation of protein homooligomerization" evidence=IDA

GO:0034766 "negative regulation of ion transmembrane transport" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0090073 "positive regulation of protein homodimerization activity" evidence=IDA

UNIPROTKB|P0CF65 CRBN "Protein cereblon" [Gallus gallus (taxid:9031)]

 Score = 399 (145.5 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
 Identities = 77/197 (39%), Positives = 115/197 (58%)

Query:   337 WRN-ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFY 395
             W+  +  +F   S    P W+Y +YD+  L +R   +  +       + L   P   S+ 
Sbjct:   226 WQKYQKRKFHCASLTSWPPWLYSLYDAETLMERVKRQLHEWDENLKDESLPTNPIDFSYR 285

Query:   396 IASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMSSE 454
             +A+ +P+ ++ R +LL+I     RLR E++++     + CK C+ T I  ++++  +S  
Sbjct:   286 VAACLPIDDALRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQDTEITTKNEIFSLSLC 345

Query:   455 GPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWLFT 514
             GP+ AYVNPHG +HE LT+ KA  L L G   TE+SWFPGYAWT+A C IC  HMGW FT
Sbjct:   346 GPMAAYVNPHGYIHETLTVYKACNLNLSGRPSTEHSWFPGYAWTIAQCRICGNHMGWKFT 405

Query:   515 ATKKKLKPKSFWGIRSS 531
             ATKK + P+ FWG+  S
Sbjct:   406 ATKKDMSPQKFWGLTRS 422

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F1P3S5 CRBN "Protein cereblon" [Gallus gallus (taxid:9031)]

 Score = 389 (142.0 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 77/199 (38%), Positives = 115/199 (57%)

Query:   337 WRN-ELSQFRRTSRAFLPHWVYRMYDSY--CLAQRAADKWKQIVGTPNMDGLVKKPDLLS 393
             W+  +  +F   S    P W+Y +YD+    L +R   +  +       + L   P   S
Sbjct:   204 WQKYQKRKFHCASLTSWPPWLYSLYDAQKETLMERVKRQLHEWDENLKDESLPTNPIDFS 263

Query:   394 FYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIAKRSDMLVMS 452
             + +A+ +P+ ++ R +LL+I     RLR E++++     + CK C+ T I  ++++  +S
Sbjct:   264 YRVAACLPIDDALRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQDTEITTKNEIFSLS 323

Query:   453 SEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGWL 512
               GP+ AYVNPHG +HE LT+ KA  L L G   TE+SWFPGYAWT+A C IC  HMGW 
Sbjct:   324 LCGPMAAYVNPHGYIHETLTVYKACNLNLSGRPSTEHSWFPGYAWTIAQCRICGNHMGWK 383

Query:   513 FTATKKKLKPKSFWGIRSS 531
             FTATKK + P+ FWG+  S
Sbjct:   384 FTATKKDMSPQKFWGLTRS 402

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q640S2 crbn "Protein cereblon" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 394 (143.8 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 80/208 (38%), Positives = 118/208 (56%)

Query:   327 SHRGEGSKMCWRNELSQ--FRRTSRAFLPHWVYRMYDSYCLAQRAADKWKQIVGTPNMDG 384
             S R   SK  W ++  +  F   S    P W+Y +YD+  L +R   +  +       D 
Sbjct:   216 SGRSPQSKCQWLHKYRRRKFLGASLTSWPSWLYALYDADSLMERVKLQLHEWDENLRDDS 275

Query:   385 LVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCK-TAIA 443
             L   P   S+ +A+ +P+ ++ R +LL+I     RLR E++++     + CK C  T I 
Sbjct:   276 LPANPIDFSYRVAACLPIDDALRIQLLQIGNAIQRLRCELDIMSKCTSLCCKHCPDTEIT 335

Query:   444 KRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCS 503
              ++++  +S  GP+ AYVNPHG VHE LT+ KA  L+L G   TE SWFPG+AWT+A C 
Sbjct:   336 TKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKAFNLSLVGRPSTENSWFPGFAWTIAQCR 395

Query:   504 ICETHMGWLFTATKKKLKPKSFWGIRSS 531
             +C +HMGW FTA +K L P+ FWG+  S
Sbjct:   396 VCGSHMGWKFTAVRKDLSPQKFWGLTRS 423

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII0237 hypothetical protein (542 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	538
pfam02190	191	pfam02190, LON, ATP-dependent protease La (LON) do	5e-20
COG2802	221	COG2802, COG2802, Uncharacterized protein, similar	2e-16
COG0466	782	COG0466, Lon, ATP-dependent Lon protease, bacteria	3e-07
pfam02190	191	pfam02190, LON, ATP-dependent protease La (LON) do	1e-05
smart00464	92	smart00464, LON, Found in ATP-dependent protease L	3e-04
TIGR00763	775	TIGR00763, lon, ATP-dependent protease La	0.002

>gnl|CDD|216923 pfam02190, LON, ATP-dependent protease La (LON) domain

 Score = 87.8 bits (218), Expect = 5e-20
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 86  TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITF 145
            LPL  L  VVLFP   LPL V +P +IAA E AL   D P+ + +V     P    +  
Sbjct: 1   ELPLLPLRNVVLFPGMVLPLHVFEPRYIAAIEEALES-DRPFGLVLVSQKDPPSIDDL-- 57

Query: 146 ATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED 198
             +GT A I Q  +L DG L ++  G +RFR+       E     E++ + E+
Sbjct: 58  YEVGTLARIIQIVKLPDGRLKILVEGLERFRI-LELEQEEPYLVAEVEDLPEE 109

This domain has been shown to be part of the PUA superfamily. Length = 191

>gnl|CDD|225362 COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 83  AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNG- 141
             L LPLF L G VL P   LPL + +P ++A     L++       GVV + R  + G 
Sbjct: 8   LPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAE-GRR--FGVVLIDRGREVGG 64

Query: 142 --RITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL 199
                 + +G  A I ++  L DG   ++ RG QRFR+     D +      +     DL
Sbjct: 65  GLPPELSDVGCLARITEFEELGDGRYLILVRGGQRFRVLEELADDDPYRRARVPFW-PDL 123

Query: 200 PL 201
           P 
Sbjct: 124 PS 125

Length = 221

>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

 Score = 52.9 bits (128), Expect = 3e-07
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 83  AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGR 142
             + LP+  L  VV+FP   +PL V +   I A E A+   D  Y I +V   ++     
Sbjct: 6   EQIELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKN-DQKY-ILLVTQ-KDASTDE 62

Query: 143 ITFA---TIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL 199
            T      +GT A+I Q  +L DG++ V+  G QR R+  +  D E     EI+++ ++ 
Sbjct: 63  PTEDDLYEVGTLAKILQILKLPDGTVKVLVEGLQRVRI-SKLSDEEEFFEAEIELLPDEP 121

Length = 782

>gnl|CDD|216923 pfam02190, LON, ATP-dependent protease La (LON) domain

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 386 VKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLES 429
           ++ P  L+  IAS +P+S   +QELLE   V  RL + +ELL+ 
Sbjct: 148 IEDPGRLADLIASLLPLSPEEKQELLETLDVKERLEKLLELLKR 191

This domain has been shown to be part of the PUA superfamily. Length = 191

>gnl|CDD|197740 smart00464, LON, Found in ATP-dependent protease La (LON)

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 388 KPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIEL 426
            P+ LS  IA+ +P+    +QELLE++G + RL + I+L
Sbjct: 54  TPEPLSDTIAALMPLELHEKQELLELEGTNKRLEKVIKL 92

N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs. Length = 92

>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 88  PLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFA- 146
           PL  L    LFP    P+ V +   I   + AL     PY +G+  + ++ DN       
Sbjct: 1   PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRL-KQPY-LGLF-LQKDDDNEEPEEDD 57

Query: 147 --TIGTTAEIRQYRRLEDGS---LNVVTRGQQRFR 176
             ++G  A+I +   L         VV  G +R R
Sbjct: 58  IYSVGVVAQILEMLPLPSSGTATYKVVVEGLRRIR 92

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 775

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	538
KOG1400	371	consensus Predicted ATP-dependent protease PIL, co	100.0
PF02190	205	LON: ATP-dependent protease La (LON) domain; Inter	99.9
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.87
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.82
COG2802	221	Uncharacterized protein, similar to the N-terminal	99.76
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.75
smart00464	92	LON Found in ATP-dependent protease La (LON). N-te	98.61
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	98.51
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.07
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.32
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	86.29
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	85.58
KOG1400	371	consensus Predicted ATP-dependent protease PIL, co	84.85
PRK05508	119	methionine sulfoxide reductase B; Provisional	84.45
PRK00222	142	methionine sulfoxide reductase B; Provisional	82.6

>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]

Probab=100.00  E-value=7e-44  Score=360.99  Aligned_cols=334  Identities=27%  Similarity=0.324  Sum_probs=249.2

Q ss_pred             CCCCccccccccccccccCC-CccccCcccccCCCeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCc
Q 009302           49 SSNQLTFDTCLASLHTYLGD-VEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPY  127 (538)
Q Consensus        49 ~~~~~~fd~sl~s~H~YLG~-~ed~~gr~~~le~g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~  127 (538)
                      -.++..|||+||..|+|||+ .|+..+ .+++++|.+..+|+++...+|+|||++||+.+..|+.+.+++...... ..+
T Consensus        28 l~de~~~n~al~d~~~~~ged~ee~~~-~~~ldd~t~~~~p~~~~~~~v~~PgqtLPl~~i~~~~~s~~r~lvs~a-r~~  105 (371)
T KOG1400|consen   28 LEDENVFNTALPDYHLYLGEDREEYEN-EARLDDDTTNWIPICGQVMAVLFPGQTLPLKFIDPQERSIVRRLVSSA-RDN  105 (371)
T ss_pred             ccchhcccccCcccccccccchhhhhc-eeeecCCceeeecccCceeeEecCcccCcchhcCHHHHHHHHHHHHhh-cCC
Confidence            34488999999999999998 455554 599999999999999999999999999999999998888887766552 125


Q ss_pred             EEEEEEeecCCCCCCcccccceeEEEEEEEEECCC--Cc--EEEEEEEeEEEEEeeeeeccCCcceEEEEEecCCCcccC
Q 009302          128 TIGVVRVFREPDNGRITFATIGTTAEIRQYRRLED--GS--LNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRT  203 (538)
Q Consensus       128 ~IgVv~~~k~~~~~~~~l~~IGT~AeI~~v~~l~D--Gs--l~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~~~~r~  203 (538)
                      .|.|+.. ..   -......-+|+++|...+.-.|  |.  ..+++.|+.|+++.+..++..|.-.|+|+++|+...-. 
T Consensus       106 ~F~vl~r-~~---v~~re~~r~tt~evd~~R~p~d~Fgn~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~~~i~~-  180 (371)
T KOG1400|consen  106 GFVVLFR-SD---VPERESLRYTTTEVDAYRVPQDNFGNALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPDVEIPC-  180 (371)
T ss_pred             ceEEEec-cc---chHHhhccccceeccccccchhhhhhhhhhhhhhcccccceeeecccCCCcccceEEecccccccc-
Confidence            6777664 11   1233446788899875443334  43  46677899999999866778888899999888533100 


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcCCCCCCCcccccccccCChhhhhhcccccccccccCccCCCCCCCcc
Q 009302          204 PRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDD  283 (538)
Q Consensus       204 l~d~f~~la~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  283 (538)
                                +      .+++.|..                              .+|..++.-|.              
T Consensus       181 ----------~------~~Sf~~~~------------------------------avq~~~~n~~~--------------  200 (371)
T KOG1400|consen  181 ----------L------LPSFIPKS------------------------------AVQLPAHNKCS--------------  200 (371)
T ss_pred             ----------c------cccccchh------------------------------hheecccCcce--------------
Confidence                      0      11111100                              01110000000              


Q ss_pred             cccccccccccCCCCCCCCCCCCcccccccccccccccccCCCCcCCCCccchhhh-hhhhhcccCCCCChhHHHhhcCH
Q 009302          284 KSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN-ELSQFRRTSRAFLPHWVYRMYDS  362 (538)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~wp~wvy~~yd~  362 (538)
                                +-++.+.              ..|     +..+  .-...+..|.. .++.++++.+.+||.|.|.+|++
T Consensus       201 ----------ia~~~n~--------------~p~-----s~e~--dm~sla~f~~i~sls~~h~~~ll~~~~was~tyqS  249 (371)
T KOG1400|consen  201 ----------IATRING--------------YPF-----SAER--DMTSLAVFRQIGSLSGFHGDDLLSWPKWASLTYQS  249 (371)
T ss_pred             ----------eccCCCC--------------Ccc-----cccc--chhhhhhheehhhhhhhcccccccccccchHHHHH
Confidence                      0000000              000     0000  00011112233 56677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCcCCCCcchhhhhhhcCCCCHHHhhhhhccCChhHHHHHHHHHHhcCCceecccccccc
Q 009302          363 YCLAQRAADKWKQIVGTPNMDGLVKKPDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLESFDLVRCKTCKTAI  442 (538)
Q Consensus       363 ~~L~~r~~~~~~~~~~~~~~~~~~~~P~~~Sywva~~lpl~~~~r~~LL~~d~~~~RL~~el~~l~~~~~l~C~~C~~~I  442 (538)
                      |.||.||.+..+++.+..+.|.++.+|+.||||+|++||+++..|.+||.++++.+|||+|+..++++++++|++|++.|
T Consensus       250 y~la~rivenarl~yE~lk~ds~~~kpivlSf~~a~kihv~e~~~~hL~~~g~v~tRlq~e~~~~~k~ti~fCk~Cqt~i  329 (371)
T KOG1400|consen  250 YFLAKRIVENARLWYELLKEDSAPGKPIVLSFKYAWKIHVCERCREHLLWEGSVMTRLQREFFGIQKETITFCKECQTDI  329 (371)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCceEeehhhhhhhhhhHHHHHHHHhhcccccchheeeecccchhhhhhHhhchhh
Confidence            99999998877777777777999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCce
Q 009302          443 AKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLA  480 (538)
Q Consensus       443 a~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~  480 (538)
                      +.++|+|.|+..|++..|+||+||+||++|++++.-+.
T Consensus       330 a~~~d~f~msk~g~qee~~np~gyIhei~t~y~~v~i~  367 (371)
T KOG1400|consen  330 AENWDHFPMSKNGPQEEYDNPMGYIHEILTRYDYVLIK  367 (371)
T ss_pred             hhhhcccccccCCchHhhcChhhHHHHHHhhhhheeec
Confidence            99999999999999999999999999999999987333

>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.90  E-value=3.3e-22  Score=190.65  Aligned_cols=109  Identities=30%  Similarity=0.526  Sum_probs=86.3

Q ss_pred             eEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEe-ecCCC---CCCcccccceeEEEEEEEEECC
Q 009302           86 TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRV-FREPD---NGRITFATIGTTAEIRQYRRLE  161 (538)
Q Consensus        86 ~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~-~k~~~---~~~~~l~~IGT~AeI~~v~~l~  161 (538)
                      +||+||+++.|+|||+++||+|+++++++|+++++.++.  ..||+++. .....   +...++|.+||+|+|.++.+.+
T Consensus         1 ~lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~I~~~~~~~   78 (205)
T PF02190_consen    1 ELPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNN--PYFGIFLVKSNKDDSDEPSIDDLYSVGTLARIIRVEELP   78 (205)
T ss_dssp             EEEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTS--E-EEEEEE-EBSSTSSSS-GGGB-SEEEEEEEEEEEEST
T ss_pred             CEEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCC--CceeEEeecccCCcccCCcccccccceEEEEEEEEEecC
Confidence            589999999999999999999999999999999998751  25888876 22111   4457899999999999999999


Q ss_pred             CCcEEEEEEEeEEEEEeeee---eccCCcceEEEEEecC
Q 009302          162 DGSLNVVTRGQQRFRLRRRW---IDVEGVPCGEIQIIQE  197 (538)
Q Consensus       162 DGsl~V~v~G~qRfrI~~~~---~~~dg~l~AeVeiL~E  197 (538)
                      ||++.|+++|++||+|.+ +   .+.+|++.|+|++++|
T Consensus        79 dg~~~v~~~g~~R~ki~~-~~~~~~~~~~~~a~v~~l~d  116 (205)
T PF02190_consen   79 DGTYKVLVQGLQRFKILK-INNETQEDPYLVAEVEPLED  116 (205)
T ss_dssp             TS-EEEEEEEEEEEEEEE-EEE--ECSSCEEEEEEEE--
T ss_pred             CCCEEEEEEEEEEEEEEE-EecccccCCceEEEEEEecc
Confidence            999999999999999998 6   5589999999999977

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.87  E-value=3.2e-21  Score=220.53  Aligned_cols=114  Identities=27%  Similarity=0.383  Sum_probs=101.2

Q ss_pred             CCCeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEE
Q 009302           80 EGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQ  156 (538)
Q Consensus        80 e~g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~  156 (538)
                      ++....+||||||+++|||||+.+||+|+++++++||++|+.++   +.|||+.+ ++..   +..+++|.|||+|+|.+
T Consensus         4 ~~~~~~~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~---~~~gvv~~-k~~~~~~p~~~dLy~VGtla~I~~   79 (784)
T PRK10787          4 ERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQ   79 (784)
T ss_pred             ccCCCceEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcC---CEEEEEEe-cCCCCCCCCcccccCccEEEEEEE
Confidence            33445689999999999999999999999999999999999875   78999987 4332   34468999999999999


Q ss_pred             EEECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          157 YRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       157 v~~l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                      +.+.+||.++|+++|++||+|.+ +.+.+||+.|+|++++++
T Consensus        80 ~~~l~DG~~~Ilv~Gl~RfrI~~-~~~~~py~~A~Ve~l~~~  120 (784)
T PRK10787         80 MLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESP  120 (784)
T ss_pred             eeECCCCeEEEEEEEEEEEEEEE-EEcCCCCEEEEEEEecCC
Confidence            99999999999999999999998 688999999999999764

>TIGR00763 lon ATP-dependent protease La

Probab=99.82  E-value=2.2e-19  Score=205.88  Aligned_cols=106  Identities=23%  Similarity=0.307  Sum_probs=93.1

Q ss_pred             EEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEE-EEEeecCCC---CCCcccccceeEEEEEEEEECC--
Q 009302           88 PLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIG-VVRVFREPD---NGRITFATIGTTAEIRQYRRLE--  161 (538)
Q Consensus        88 PVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~Ig-Vv~~~k~~~---~~~~~l~~IGT~AeI~~v~~l~--  161 (538)
                      |||||+++|||||+.+||+|++|++++||++|+.++   +.|+ ++.+ ++..   +...++|.|||+|+|.++.+.+  
T Consensus         1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~---~~~~~vv~~-k~~~~~~p~~~~ly~VGt~a~I~~~~~~~d~   76 (775)
T TIGR00763         1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLK---QPYLGLFLQ-KDDDNEEPEEDDIYSVGVVAQILEMLPLPSS   76 (775)
T ss_pred             CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcC---CcEEEEEEe-cCcccCCCCcccccCCceEEEEEEeccCCCC
Confidence            899999999999999999999999999999999875   5666 6665 4432   3456899999999999999954  


Q ss_pred             -CCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          162 -DGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       162 -DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                       ||.++|+++|.+||+|.+ +.+.+||+.|+|+.++++
T Consensus        77 ~dG~~~Ilv~G~~R~rI~~-~~~~~p~~~A~V~~l~~~  113 (775)
T TIGR00763        77 GTATYKVVVEGLRRIRIKE-LSDKGGYLVVRVDNLKEE  113 (775)
T ss_pred             CCCeEEEEEEEEEEEEEEE-EecCCCcEEEEEEEecCc
Confidence             499999999999999997 788999999999999764

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]

Probab=99.76  E-value=2.5e-17  Score=160.78  Aligned_cols=115  Identities=29%  Similarity=0.479  Sum_probs=100.6

Q ss_pred             CCeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEEE
Q 009302           81 GGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQY  157 (538)
Q Consensus        81 ~g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~v  157 (538)
                      ...+..||||||++.|||||..+||+||+++|..||+.+++++   +.|||+...++.+   +....+..|||+|+|+++
T Consensus         6 ~~~p~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~---r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~   82 (221)
T COG2802           6 DDLPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEG---RRFGVVLIDRGREVGGGLPPELSDVGCLARITEF   82 (221)
T ss_pred             CCccceeeccccccccccCCCCCchhhccHHHHHHHHHHHhcC---CceeEEEecccccccCCCcchhhccceeEEEeEe
Confidence            3457789999999999999999999999999999999999975   8999998744332   233568899999999999


Q ss_pred             EECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          158 RRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       158 ~~l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                      ...+||.+.|.++|.+||||.+...+.+||..|+++.++|.
T Consensus        83 ~~~~DGr~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~  123 (221)
T COG2802          83 EELGDGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDL  123 (221)
T ss_pred             eEcCCCcEEEEEEeEEEEEEEEEecccCcceeeccccCCCC
Confidence            99999999999999999999996666899999998888774

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.6e-17  Score=182.00  Aligned_cols=127  Identities=28%  Similarity=0.398  Sum_probs=108.1

Q ss_pred             eEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEEEEECCC
Q 009302           86 TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRRLED  162 (538)
Q Consensus        86 ~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~v~~l~D  162 (538)
                      .||++|++++|+||++++||.|.++.++++++.++..+  .+.|++++| ++..   +..+++|.+||+|+|.++.++||
T Consensus         9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~--~k~i~l~~q-k~~~~d~p~~~dly~vGt~a~I~q~~~lpd   85 (782)
T COG0466           9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKND--QKYILLVTQ-KDASTDEPTEDDLYEVGTLAKILQILKLPD   85 (782)
T ss_pred             cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCC--CCEEEEEEe-cccccCCCChhhhhhcchheeeeeeeeCCC
Confidence            79999999999999999999999999999999999875  378999988 5332   56679999999999999999999


Q ss_pred             CcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCCC---------cccCHHHHHHHHHhhcC
Q 009302          163 GSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL---------PLRTPRDVFETLGCVSN  216 (538)
Q Consensus       163 Gsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~~---------~~r~l~d~f~~la~l~~  216 (538)
                      |+++|+++|++|++|.+ +...++++.|+++.+++..         +.+.+...|.+|+.+++
T Consensus        86 g~~kvlveg~~R~~I~~-~~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~  147 (782)
T COG0466          86 GTVKVLVEGLQRVRISK-LSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNK  147 (782)
T ss_pred             CcEEEEEEeeeeEEEEe-eccCCCceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999998 7888899999999998754         23444455555555544

>smart00464 LON Found in ATP-dependent protease La (LON)

Probab=98.61  E-value=2e-07  Score=79.69  Aligned_cols=37  Identities=38%  Similarity=0.597  Sum_probs=34.8

Q ss_pred             EEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcC
Q 009302           87 LPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQV  123 (538)
Q Consensus        87 LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~  123 (538)
                      +|++|++++|+|||+++||.+.+++.+++++++++++
T Consensus         2 lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~   38 (92)
T smart00464        2 LPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRS   38 (92)
T ss_pred             ceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999999988764

N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=98.51  E-value=1.1e-07  Score=82.27  Aligned_cols=91  Identities=18%  Similarity=0.285  Sum_probs=66.3

Q ss_pred             ceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCcce
Q 009302          432 LVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMGW  511 (538)
Q Consensus       432 ~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~HlGW  511 (538)
                      +|.|++|.+.|+...++++            .+|.....++|.++.+-...+..-.--.+...|.|+.+.|..|+++|||
T Consensus         2 vf~C~~C~t~l~ds~~lvs------------~~g~~~~a~l~~~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGw   69 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS------------FHGREGKAYLFNNVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGW   69 (96)
T ss_pred             EEECCCCCCCcCCHHHhee------------cCCCCccEEEEeeeeecccccceEEEeeCCCCEEEEEeEcccCChhHCc
Confidence            5899999999999999887            3444446666666544333444444444444499999999999999999


Q ss_pred             eEEecCCCCCc-ceeEEEeccccc
Q 009302          512 LFTATKKKLKP-KSFWGIRSSQVA  534 (538)
Q Consensus       512 ~F~a~~~~~~p-~~F~Gl~~~~l~  534 (538)
                      +|..+....+. .+.|-|-.+.|.
T Consensus        70 kY~~a~~~~~~k~g~file~~~i~   93 (96)
T PF03226_consen   70 KYESAPEEQKYKEGKFILEKASIS   93 (96)
T ss_pred             EEEEcCHhHhhhCCEEEEEhhHEE
Confidence            99988765544 577887776653

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2.2e-06  Score=91.79  Aligned_cols=111  Identities=28%  Similarity=0.480  Sum_probs=94.3

Q ss_pred             CeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCCCCCcccccceeEEEEEEEEECC
Q 009302           82 GAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLE  161 (538)
Q Consensus        82 g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~~~~~~l~~IGT~AeI~~v~~l~  161 (538)
                      +.....|+|++ .+..||+...|++++++++..|+++++..++  ..+|++..  +...+....+.||++.+|..+..+.
T Consensus       172 ~~e~~~p~f~v-~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~--~rf~i~~s--d~~~~~~~~~e~g~i~ei~~v~~l~  246 (398)
T KOG4159|consen  172 SRECESPLFPV-CTLAFPEVPCPLQVFEPRYRLMIRRLLETGD--KRFGICLS--DSSKGSGQAAEIGCILEIRKVESLG  246 (398)
T ss_pred             cccccCCcccc-cccccccccCcHHHccchHHHHHHHHHhhcc--eeeeeecc--cccCCcchhhhccchhhhccccccc
Confidence            34567899987 5789999999999999999999999998753  68998764  2222222467899999999999999


Q ss_pred             CCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          162 DGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       162 DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                      ||...+...|..||++.. ..+.++|..|+|+.+++.
T Consensus       247 dgrsv~~~~gk~r~r~~~-~~~~d~y~~~~ve~l~d~  282 (398)
T KOG4159|consen  247 DGRSVVDSIGKSRFRVLL-FSQTDGYPVADVEYLEDR  282 (398)
T ss_pred             ccchhhhhhcCcceeeee-ecCCCcceeeeeeeeeCc
Confidence            999999999999999997 789999999999999884

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00072  Score=76.62  Aligned_cols=54  Identities=20%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             CCeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecC
Q 009302           81 GGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFRE  137 (538)
Q Consensus        81 ~g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~  137 (538)
                      .....+||++|++.-+||||..+++.|.+++.+++|++-+...  ..++|++.. ++
T Consensus        63 ~~~~~~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~--qpyiG~fl~-kd  116 (906)
T KOG2004|consen   63 PDVPPRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQ--QPYIGAFLL-KD  116 (906)
T ss_pred             cccCcccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhc--Ccccceeee-cc
Confidence            3445789999999999999999999999999999999998775  358999987 54

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=86.29  E-value=0.16  Score=46.26  Aligned_cols=75  Identities=24%  Similarity=0.457  Sum_probs=43.8

Q ss_pred             CceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCcc
Q 009302          431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMG  510 (538)
Q Consensus       431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~HlG  510 (538)
                      ....|++|.+-+++..|+++-+-.|       -+|-.   -.|.++.|+. .|+....+=-===++=+-+.|..|++-+|
T Consensus        14 ~~y~C~~C~thla~~~dliSksf~g-------r~G~A---yLf~~vvNv~-~ge~e~R~mlTG~h~V~di~C~~C~~~~G   82 (122)
T KOG3399|consen   14 RLYSCAHCKTHLARHDDLISKSFRG-------RTGRA---YLFNRVVNVI-IGETEQRVMLTGLHTVADIFCVLCGTGLG   82 (122)
T ss_pred             ceEeccCCcccccchhhcccccccc-------CCCcc---hhhhhhhhhe-echHHHHHHHHhHHhhcchhhhhcCCCcc
Confidence            3689999999999999988765443       22221   1233333322 12221111100012223478999999999


Q ss_pred             eeEEec
Q 009302          511 WLFTAT  516 (538)
Q Consensus       511 W~F~a~  516 (538)
                      |+|.-.
T Consensus        83 WkYe~a   88 (122)
T KOG3399|consen   83 WKYEHA   88 (122)
T ss_pred             eeeeec
Confidence            999754

>TIGR00357 methionine-R-sulfoxide reductase

Probab=85.58  E-value=1.1  Score=41.75  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=42.2

Q ss_pred             CCceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCC
Q 009302          430 FDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICET  507 (538)
Q Consensus       430 ~~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~  507 (538)
                      ..+..|+.|+.++....+-|.-.  ...-+|..|-  +.|-+.                .+.|  -|+.=+-+.|++|++
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~KfdSg--~GWPSF~~~i~~~~V~~~----------------~D~s--~gm~RtEv~C~~Cg~   97 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSEDKFDSG--CGWPSFYKPISEEVVAYE----------------RDES--HGMIRTEVRCRNCDA   97 (134)
T ss_pred             CeEEEccCCCCccccccchhcCC--CCCcCcCcccCCCceEEe----------------ecCC--CCcEEEEEEecCCCC
Confidence            34789999999999988855422  2233454442  111110                1112  256667799999999


Q ss_pred             CcceeEEe
Q 009302          508 HMGWLFTA  515 (538)
Q Consensus       508 HlGW~F~a  515 (538)
                      |||=-|.-
T Consensus        98 HLGHVF~D  105 (134)
T TIGR00357        98 HLGHVFDD  105 (134)
T ss_pred             ccCcccCC
Confidence            99999974

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]

Probab=84.85  E-value=0.12  Score=54.53  Aligned_cols=49  Identities=14%  Similarity=0.096  Sum_probs=38.2

Q ss_pred             CCCcccccCCCCceEEEeCccCC---CCcceeEEecCCCCC--cceeEEEeccc
Q 009302          484 PAETEYSWFPGYAWTVASCSICE---THMGWLFTATKKKLK--PKSFWGIRSSQ  532 (538)
Q Consensus       484 ~ps~e~SWFpGYaW~ia~C~~C~---~HlGW~F~a~~~~~~--p~~F~Gl~~~~  532 (538)
                      .+-..-.||++|.|||+.|..|.   .|.+|+|...+.+-.  -..|-|++++.
T Consensus       304 ~tRlq~e~~~~~k~ti~fCk~Cqt~ia~~~d~f~msk~g~qee~~np~gyIhei  357 (371)
T KOG1400|consen  304 MTRLQREFFGIQKETITFCKECQTDIAENWDHFPMSKNGPQEEYDNPMGYIHEI  357 (371)
T ss_pred             ccchheeeecccchhhhhhHhhchhhhhhhcccccccCCchHhhcChhhHHHHH
Confidence            45667789999999999999999   999999987664321  25677776554

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=84.45  E-value=1.4  Score=40.20  Aligned_cols=65  Identities=18%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             cCCceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302          429 SFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH  508 (538)
Q Consensus       429 ~~~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H  508 (538)
                      ...+.+|+.|+.++.+..+-|. | ..-.-+|..|-.   +.+....-            .+   | .=+-+.|++|++|
T Consensus        30 ~~G~Y~C~~Cg~pLF~S~~Kfd-S-g~GWPSF~~~i~---~~v~~~~D------------~~---~-~RtEv~C~~C~~H   88 (119)
T PRK05508         30 EKGTYVCKQCGAPLYRSEDKFK-S-GCGWPSFDDEIK---GAVKRIPD------------AD---G-RRTEIVCANCGGH   88 (119)
T ss_pred             CCeEEEecCCCCcccccccccc-C-CCCCcccCcccc---cceEEEec------------CC---C-cEEEEEeCCCCCc
Confidence            3457899999999999888554 2 222455655531   12221111            11   2 1255999999999


Q ss_pred             cceeEE
Q 009302          509 MGWLFT  514 (538)
Q Consensus       509 lGW~F~  514 (538)
                      ||=-|.
T Consensus        89 LGHVF~   94 (119)
T PRK05508         89 LGHVFE   94 (119)
T ss_pred             cCcccC
Confidence            999997

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=82.60  E-value=1.7  Score=40.78  Aligned_cols=68  Identities=18%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             CCceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCc
Q 009302          430 FDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHM  509 (538)
Q Consensus       430 ~~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~Hl  509 (538)
                      ..+..|+.|++++....+-|.-.  ...-+|..|--  -+.|....-            +|  .|+.=+-+.|++|++||
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~Kf~Sg--~GWPSF~~~i~--~~~V~~~~D------------~s--~gm~RtEv~C~~Cg~HL  102 (142)
T PRK00222         41 KGIYVCIVCGEPLFSSDTKFDSG--CGWPSFTKPID--EEAIRELRD------------TS--HGMVRTEVRCANCDSHL  102 (142)
T ss_pred             CeEEEecCCCchhcCCcccccCC--CCCcCcCcccC--CCceEEeec------------cC--CCceEEEEEeCCCCCcc
Confidence            34789999999999988866422  22334544421  001111110            11  13444669999999999


Q ss_pred             ceeEEe
Q 009302          510 GWLFTA  515 (538)
Q Consensus       510 GW~F~a  515 (538)
                      |=-|.-
T Consensus       103 GHVF~D  108 (142)
T PRK00222        103 GHVFPD  108 (142)
T ss_pred             CcccCC
Confidence            999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	538
1zbo_A	210	Hypothetical protein BPP1347; alpha-beta protein,	7e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
2ane_A	125	ATP-dependent protease LA; LONN119, LON protease,	3e-06
3ljc_A	252	ATP-dependent protease LA; LON N-domain, allosteri	8e-05
3m65_A	209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	5e-04

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10 Length = 210

 Score = 78.7 bits (194), Expect = 7e-17
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 86  TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFR----EPDNG 141
            +PLF L    LFP   L LRV +  ++    R ++        GVV + +       +G
Sbjct: 3   EIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIAD---GSEFGVVVLEQGTEVRRPDG 58

Query: 142 RITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPL 201
           R   A  GT A I  +       L +   G  RFRL        G+  G+ + + +D PL
Sbjct: 59  REVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPL 118

Query: 202 RTPRD 206
             P +
Sbjct: 119 EVPPE 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 84/589 (14%), Positives = 170/589 (28%), Gaps = 201/589 (34%)

Query: 17  IRQLDFEE--------LQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLASLHTYLGD 68
           +   D ++        L  EE+D    S D                F T           
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT--------LRLFWT----------- 70

Query: 69  VEDTHNRMA--FLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPN--FIAAAERALSQVD 124
           +      M   F+E                          V++ N  F+ +  +      
Sbjct: 71  LLSKQEEMVQKFVEE-------------------------VLRINYKFLMSPIKT----- 100

Query: 125 VPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGS-----LNVVTRGQQRFRLRR 179
                      R+P      +        I Q  RL + +      N V+R Q   +LR+
Sbjct: 101 ---------EQRQPSMMTRMY--------IEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQ 142

Query: 180 --------RWIDVEGVP-CGE----IQIIQ-EDLPLRTPRDVF-ETLGCVS------NLS 218
                   + + ++GV   G+    + +     +  +    +F   L   +       + 
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 219 QSLSHTLPSNSSSRGYGIRDNDSDATSE-ESFESELSPTERRIHQS--------VID--- 266
           Q L + +  N +SR     D+ S+      S ++EL    RR+ +S        V+    
Sbjct: 203 QKLLYQIDPNWTSRS----DHSSNIKLRIHSIQAEL----RRLLKSKPYENCLLVLLNVQ 254

Query: 267 -------FAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRI-- 317
                  F   C I+   T+     + F S   +    L+         + +++ L+   
Sbjct: 255 NAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 318 GKSSALGRQSHRGEGSKMCWRNEL--SQFRRTSRAFLPHW-VYRMYDSYCLAQRAADKWK 374
            +   L R+        +   N    S    + R  L  W  ++  +         DK  
Sbjct: 313 CRPQDLPRE--------VLTTNPRRLSIIAESIRDGLATWDNWKHVNC--------DKLT 356

Query: 375 QIVGTPNMDGLVKKPDLL-SFYIA-------SKIPVSESTRQELLEI---DGVSYRLRRE 423
            I+ + +++ L  +P      +         + IP        LL +   D +   +   
Sbjct: 357 TIIES-SLNVL--EPAEYRKMFDRLSVFPPSAHIP------TILLSLIWFDVIKSDVMVV 407

Query: 424 IELLESFDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALY- 482
           +  L  + LV  +  ++ I      + +  +  L         +H  + ++  N    + 
Sbjct: 408 VNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYA----LHRSI-VDHYNIPKTFD 460

Query: 483 -----GPAETEYS-WFPGYAWTVASCSICETHMGWLFTATKKKLKPKSF 525
                 P   +Y     G+            H+  +    +  L    F
Sbjct: 461 SDDLIPPYLDQYFYSHIGH------------HLKNIEHPERMTLFRMVF 497

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10 Length = 125

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 29/140 (20%)

Query: 70  EDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERAL--------- 120
              H+ M   E    + +P+  L  VV++P   +PL V +   I   E A+         
Sbjct: 2   HHHHHHMN-PERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLV 60

Query: 121 ----SQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFR 176
               +  D P            ++      T+GT A I Q  +L DG++ V+  G QR R
Sbjct: 61  AQKEASTDEP----------GVND----LFTVGTVASILQMLKLPDGTVKVLVEGLQRAR 106

Query: 177 LRRRWIDVEGVPCGEIQIIQ 196
           +     D       + + ++
Sbjct: 107 I-SALSDNGEHFSAKAEYLE 125

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli} Length = 252

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 37/160 (23%)

Query: 71  DTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERAL---------- 120
             H+ M   E    + +P+  L  VV++P   +PL V +   I   E A+          
Sbjct: 3   HHHHHMN-PERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVA 61

Query: 121 ---SQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRL 177
              +  D P            ++      T+GT A I Q  +L DG++ V+  G QR R+
Sbjct: 62  QKEASTDEP----------GVND----LFTVGTVASILQMLKLPDGTVKVLVEGLQRARI 107

Query: 178 RRRWIDVEGVPCGEIQIIQEDLP--------LRTPRDVFE 209
                D       + + ++            +RT    FE
Sbjct: 108 -SALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFE 146

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis} Length = 209

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 36/145 (24%)

Query: 86  TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERAL-------------SQVDVPYTIGVV 132
           ++PL  L G++++P   L L V +   + A E+A+               +D P      
Sbjct: 8   SIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEP------ 61

Query: 133 RVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEI 192
                 D       T+GT  +I+Q  +L +G++ V+  G +R  +  ++ + E     +I
Sbjct: 62  ----GEDE----IFTVGTYTKIKQMLKLPNGTIRVLVEGLKRAHI-VKYNEHEDYTSVDI 112

Query: 193 QIIQEDLP--------LRTPRDVFE 209
           Q+I ED          +RT  D F+
Sbjct: 113 QLIHEDDSKDTEDEALMRTLLDHFD 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	538
3m65_A	209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	99.95
1zbo_A	210	Hypothetical protein BPP1347; alpha-beta protein,	99.94
3ljc_A	252	ATP-dependent protease LA; LON N-domain, allosteri	99.94
2ane_A	125	ATP-dependent protease LA; LONN119, LON protease,	99.89
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	83.86
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	83.38
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	82.4
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	80.89

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}

Probab=99.95  E-value=7.7e-27  Score=225.81  Aligned_cols=112  Identities=26%  Similarity=0.415  Sum_probs=101.3

Q ss_pred             CeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEEEE
Q 009302           82 GAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYR  158 (538)
Q Consensus        82 g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~v~  158 (538)
                      ..+.+|||||++++|||||+++||+|+++++++||++|++++   +.||++++ ++..   ++.+++|.|||+|+|.++.
T Consensus         4 ~~~~~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~i~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~   79 (209)
T 3m65_A            4 ELKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHD---HMIFLATQ-QDISIDEPGEDEIFTVGTYTKIKQML   79 (209)
T ss_dssp             CEEEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTT---SEEEEEEB-SSTTCSSCCGGGBCSEEEEEEEEEEE
T ss_pred             CCCCceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCcchhhheeEEEEEEEEE
Confidence            345789999999999999999999999999999999999875   78999987 5433   4457899999999999999


Q ss_pred             ECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          159 RLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       159 ~l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                      +++||+++|+++|.+||+|.+ +.+.+||+.|+|+.++|.
T Consensus        80 ~l~dG~~~v~v~G~~R~ri~~-~~~~~~~~~a~v~~~~~~  118 (209)
T 3m65_A           80 KLPNGTIRVLVEGLKRAHIVK-YNEHEDYTSVDIQLIHED  118 (209)
T ss_dssp             ECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEECCCC
T ss_pred             ECCCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEEecCC
Confidence            999999999999999999998 788999999999999774

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10

Probab=99.94  E-value=2.2e-26  Score=222.74  Aligned_cols=109  Identities=28%  Similarity=0.444  Sum_probs=97.6

Q ss_pred             eeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC----C-CCcccccceeEEEEEEEEE
Q 009302           85 LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD----N-GRITFATIGTTAEIRQYRR  159 (538)
Q Consensus        85 ~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~----~-~~~~l~~IGT~AeI~~v~~  159 (538)
                      .+|||||| ++|||||+++||+|++|++++||++|++++   +.||++++ ++..    + ..+++|.|||+|+|.++.+
T Consensus         2 ~~lPl~PL-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~~glv~~-~~~~~~~~~~~~~dl~~vGt~a~I~~~~~   76 (210)
T 1zbo_A            2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADG---SEFGVVVL-EQGTEVRRPDGREVLARAGTMARIDHWEA   76 (210)
T ss_dssp             CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTT---CCEEEEEE-SSSCSSCCSSCCCCEEEEEEEEEEEEEEC
T ss_pred             cEeeEEec-CeeecCCCceeeEECCHHHHHHHHHHHhcC---CcEEEEEe-CCCcccCcccccCchhceEEEEEEEEEEe
Confidence            46999999 999999999999999999999999999875   77999998 4322    2 2467999999999999999


Q ss_pred             CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       160 l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                      ++||+++|+++|.+||+|.+.+.+.+||+.|+|++++|.
T Consensus        77 lpdG~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~  115 (210)
T 1zbo_A           77 PMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDD  115 (210)
T ss_dssp             SSTTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCC
T ss_pred             CCCceEEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCC
Confidence            999999999999999999765788899999999999874

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}

Probab=99.94  E-value=3.8e-26  Score=227.39  Aligned_cols=111  Identities=27%  Similarity=0.384  Sum_probs=100.0

Q ss_pred             eeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEEEEE
Q 009302           83 AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRR  159 (538)
Q Consensus        83 ~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~v~~  159 (538)
                      .+.+||||||+++|||||+++||+|++|+|++||++|++++   +.||++++ ++..   ++.+++|.|||+|+|.++.+
T Consensus        14 ~~~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~---~~~~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~~   89 (252)
T 3ljc_A           14 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQMLK   89 (252)
T ss_dssp             CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTT---TEEEEEEB-CSSCCSSCCSSSBCSEEEEEEECCCBC
T ss_pred             CCCceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCccchhheeEEEEEEEEEE
Confidence            45679999999999999999999999999999999999875   68999987 5433   45678999999999999999


Q ss_pred             CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       160 l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                      ++||+++|+++|.+||+|.+ +.+.+||+.|+|+++++.
T Consensus        90 lpdG~~~v~v~G~~R~rI~~-~~~~~~~~~a~ve~l~d~  127 (252)
T 3ljc_A           90 LPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESP  127 (252)
T ss_dssp             CTTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCC
T ss_pred             CCCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEeecCC
Confidence            99999999999999999997 778899999999988764

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10

Probab=99.89  E-value=2e-22  Score=181.17  Aligned_cols=115  Identities=27%  Similarity=0.363  Sum_probs=98.1

Q ss_pred             cccCCCeeeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEE
Q 009302           77 AFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAE  153 (538)
Q Consensus        77 ~~le~g~~~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~Ae  153 (538)
                      ...+++.+.+||||||+++|||||+++||.|+++++++||++|++++   +.||++++ ++..   ++.+++|.|||+|+
T Consensus         8 ~~~~~~~p~~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~---~~i~lv~~-k~~~~~~p~~~dl~~vGt~a~   83 (125)
T 2ane_A            8 MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVAS   83 (125)
T ss_dssp             -------CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTT---SEEEEEEB-CTTCCSSCCGGGBCSEEEEEE
T ss_pred             cCcccCCCCeEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCccCCCccchhccEEEEE
Confidence            34466777889999999999999999999999999999999999875   67999887 5432   44578999999999


Q ss_pred             EEEEEECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEec
Q 009302          154 IRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQ  196 (538)
Q Consensus       154 I~~v~~l~DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~  196 (538)
                      |.++.+++||+++|+++|.+||+|.+ +.+.+||+.|+|++++
T Consensus        84 I~~~~~lpdG~~~ilv~G~~R~rI~~-~~~~~~~~~a~V~~l~  125 (125)
T 2ane_A           84 ILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLE  125 (125)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEEC-
T ss_pred             EEEEeeCCCCcEEEEEEEEEEEEEEE-EEcCCCcEEEEEEECC
Confidence            99999999999999999999999998 8889999999999874

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=83.86  E-value=1.1  Score=40.79  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=42.9

Q ss_pred             CceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCcc
Q 009302          431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMG  510 (538)
Q Consensus       431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~HlG  510 (538)
                      .+.+|+.|++++....+-|.  +..-.-+|..|---  .|...             .+.|+  |..=|-+.|++|++|||
T Consensus        41 G~Y~C~~Cg~pLF~S~~Kfd--Sg~GWPSF~~pi~~--~v~~~-------------~D~s~--gm~RtEV~C~~Cg~HLG  101 (144)
T 3e0o_A           41 GLYVDIVSGKPLFTSKDKFD--SQCGWPSFTKPIEE--EVEEK-------------LDTSH--GMIRTEVRSRTADSHLG  101 (144)
T ss_dssp             EEEEETTTCCEEEETTTBCC--CTTSSCEESCCSTT--TEEEE-------------EECCT--TSCEEEEEETTTCCEEE
T ss_pred             EEEEeCCCCcccccCccccc--CCCCCcccCchhcc--ceEEe-------------ecCCC--CceEEEEEcCCCCCccC
Confidence            46899999999998887554  22234567666421  11111             11122  55556699999999999


Q ss_pred             eeEEe
Q 009302          511 WLFTA  515 (538)
Q Consensus       511 W~F~a  515 (538)
                      --|.-
T Consensus       102 HVF~D  106 (144)
T 3e0o_A          102 HVFND  106 (144)
T ss_dssp             EEESC
T ss_pred             CccCC
Confidence            99963

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=83.38  E-value=1.1  Score=40.92  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=43.6

Q ss_pred             CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302          431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH  508 (538)
Q Consensus       431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H  508 (538)
                      .+.+|+.|+.++....+-|. |. .-.-+|..|-  +.|-+..                +.|+  |..=+-+.|++|++|
T Consensus        42 G~Y~C~~Cg~pLF~S~~KFd-Sg-~GWPSF~~pi~~~~v~~~~----------------D~s~--gm~RtEV~C~~Cg~H  101 (146)
T 3hcg_A           42 GIYVDVVSGEPLFSSADKYD-SG-CGWPSFTRPIDAKSVTEHD----------------DFSY--NMRRTEVRSHAADSH  101 (146)
T ss_dssp             EEEEETTTCCEEEEGGGEEC-CS-SSSCEESSCSSGGGEEEEE----------------EEET--TEEEEEEEETTTCCE
T ss_pred             EEEEecCCCcccccCccccc-CC-CCChhhccccCCCceEEee----------------cCCC--CcEEEEEEeCCCCCc
Confidence            47899999999999888665 22 2355676664  3332221                1122  344466899999999


Q ss_pred             cceeEEe
Q 009302          509 MGWLFTA  515 (538)
Q Consensus       509 lGW~F~a  515 (538)
                      ||=-|.-
T Consensus       102 LGHVF~D  108 (146)
T 3hcg_A          102 LGHVFPD  108 (146)
T ss_dssp             EEEEESC
T ss_pred             cCceeCC
Confidence            9999953

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=82.40  E-value=1  Score=41.81  Aligned_cols=65  Identities=23%  Similarity=0.514  Sum_probs=43.5

Q ss_pred             CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302          431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH  508 (538)
Q Consensus       431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H  508 (538)
                      .+.+|+.|+.++....+-|. | ..-.-+|..|-  +.|-+..-                .|+  |..=+-+.|+.|+.|
T Consensus        72 GiY~C~~Cg~pLF~S~~KFd-S-GcGWPSF~~pi~~~~V~~~~D----------------~s~--gm~RtEV~C~~Cg~H  131 (164)
T 3cxk_A           72 GIYHCVVCGTALFESGAKYH-S-GCGWPSYFKPIDGEVIDEKMD----------------YTH--GMTRVEVRCNQCGAH  131 (164)
T ss_dssp             EEEEETTTCCEEEEGGGBCC-C-CSSSCEESSCSSTTSEEEEEE----------------CGG--GCCEEEEEETTTCCE
T ss_pred             eEEEccCCCccccCCchhcc-C-CCCCcccCcccCCCceEEeEC----------------CCC--CcEEEEEEeCCCCCc
Confidence            46899999999998887653 2 22245676663  22222221                222  455566999999999


Q ss_pred             cceeEEe
Q 009302          509 MGWLFTA  515 (538)
Q Consensus       509 lGW~F~a  515 (538)
                      ||=-|.-
T Consensus       132 LGHVF~D  138 (164)
T 3cxk_A          132 LGHVFED  138 (164)
T ss_dssp             EEEEESC
T ss_pred             cCcccCC
Confidence            9999963

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=80.89  E-value=0.86  Score=41.95  Aligned_cols=65  Identities=23%  Similarity=0.541  Sum_probs=39.7

Q ss_pred             CceecccccccccCCCceeeeccCCceeEEeCCC--CceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCC
Q 009302          431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPH--GCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETH  508 (538)
Q Consensus       431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~--G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~H  508 (538)
                      .+.+|+.|+.++....+-|. |.-| .-+|..|-  +.|-+                ..+.|+  |+.=+-+.|++|+.|
T Consensus        49 G~Y~C~~Cg~pLF~S~~KFd-Sg~G-WPSF~~pi~~~~v~~----------------~~D~s~--gm~RtEV~C~~Cg~H  108 (154)
T 3hcj_A           49 GVYTCRLCGLPLFRSNAKFD-SGTG-WPSFFAPYDPAHVRE----------------IRDTSY--GMIRTEIVCARCDSH  108 (154)
T ss_dssp             EEEEETTTCCEEEEECTTCC-CCTT-SSTTEEESCGGGEEE----------------ECCTTT--TTSCEEEEETTTCCE
T ss_pred             EEEEccCCCCccccCccccc-CCCC-CcccccccCccceEE----------------eecCCC--CceEEEEEeCCCCCc
Confidence            46899999999988777554 1111 22333221  11111                012222  555577999999999


Q ss_pred             cceeEEe
Q 009302          509 MGWLFTA  515 (538)
Q Consensus       509 lGW~F~a  515 (538)
                      ||=-|.-
T Consensus       109 LGHVF~D  115 (154)
T 3hcj_A          109 LGHVFPD  115 (154)
T ss_dssp             EEEEESC
T ss_pred             cCCccCC
Confidence            9999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	538
d2anea1	110	b.122.1.10 (A:8-117) ATP-dependent protease La (Lo	1e-15
d1zboa1	197	b.122.1.10 (A:2-198) Hypothetical protein BPP1347	1e-09
d1zboa1	197	b.122.1.10 (A:2-198) Hypothetical protein BPP1347	3e-04

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 110

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: ATP-dependent protease La (Lon), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 85  LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRIT 144
           + +P+  L  VV++P   +PL V +   I   E A+        +   +     + G   
Sbjct: 2   IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDK-KIMLVAQKEASTDEPGVND 60

Query: 145 FATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQII 195
             T+GT A I Q  +L DG++ V+  G QR R+     D       + + +
Sbjct: 61  LFTVGTVASILQMLKLPDGTVKVLVEGLQRARI-SALSDNGEHFSAKAEYL 110

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]} Length = 197

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 87  LPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVD-VPYTIGVVRVFREPDNGRITF 145
           +PLF L    LFP   L LRV +  ++    R ++        +          +GR   
Sbjct: 3   IPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVL 61

Query: 146 ATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPR 205
           A  GT A I  +       L +   G  RFRL        G+  G+ + + +D PL  P 
Sbjct: 62  ARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPP 121

Query: 206 DV 207
           ++
Sbjct: 122 EL 123

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]} Length = 197

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 389 PDLLSFYIASKIPVSESTRQELLEIDGVSYRLRREIELLES 429
              ++   A  + +  + +  LL +  +  RLR    +L +
Sbjct: 158 CGWVADRWAEMLSLPPADKARLLLLPPLD-RLREIDAVLAA 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	538
d1zboa1	197	Hypothetical protein BPP1347 {Bordetella parapertu	99.93
d2anea1	110	ATP-dependent protease La (Lon), N-terminal domain	99.86
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	88.94
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	86.15

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

Probab=99.93  E-value=3.8e-25  Score=205.96  Aligned_cols=109  Identities=28%  Similarity=0.455  Sum_probs=93.3

Q ss_pred             eEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC----CCCcccccceeEEEEEEEEECC
Q 009302           86 TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD----NGRITFATIGTTAEIRQYRRLE  161 (538)
Q Consensus        86 ~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~----~~~~~l~~IGT~AeI~~v~~l~  161 (538)
                      .|||||| ++|+|||+++||+|++|+|++|+++|++++   +.+++++..+...    .+.+++|.|||+|+|.++.+.+
T Consensus         2 elPlfpL-~~VlfP~~~~PL~Ife~ry~~~i~~~l~~~---~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~   77 (197)
T d1zboa1           2 EIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADG---SEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPM   77 (197)
T ss_dssp             EEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTT---CCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSS
T ss_pred             CCCEEeC-CCccCCCcceeeEeCchHHHHHHHHHHhcC---CCeeeeccccccccccccccccccceeEEEEEeeecccC
Confidence            6999999 589999999999999999999999999886   5676665523221    2457799999999999999999


Q ss_pred             CCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC
Q 009302          162 DGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED  198 (538)
Q Consensus       162 DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL~E~  198 (538)
                      ||+++|+++|.+||+|.+.+...++|+.|+++++++.
T Consensus        78 dG~~~i~v~G~~R~~i~~~~~~~~~~~~~~v~~~~~~  114 (197)
T d1zboa1          78 PALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDD  114 (197)
T ss_dssp             TTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCC
T ss_pred             CCceeEeeeeccceeeeeeeeccCceEEEEEEecccc
Confidence            9999999999999999985455678999999998764

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: ATP-dependent protease La (Lon), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.6e-21  Score=166.53  Aligned_cols=106  Identities=28%  Similarity=0.406  Sum_probs=96.1

Q ss_pred             eeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCcEEEEEEeecCCC---CCCcccccceeEEEEEEEEECC
Q 009302           85 LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRRLE  161 (538)
Q Consensus        85 ~~LPVlpL~~vVLFPG~tlPL~V~~p~~i~aV~~a~~~~da~~~IgVv~~~k~~~---~~~~~l~~IGT~AeI~~v~~l~  161 (538)
                      .+||||||++.|+|||+++||+|+++++++|+++|++++   +.++++.+ ++..   +..+++|.+||+|+|.++.+.+
T Consensus         2 ~~lPv~pl~~~vlFPg~~~pl~v~~~~~~~~v~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~i~~~~~~~   77 (110)
T d2anea1           2 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQMLKLP   77 (110)
T ss_dssp             EEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTT---SEEEEEEB-CTTCCSSCCGGGBCSEEEEEEEEEEEECT
T ss_pred             ceEeEEEcCCceeCCCccEEEEECCHHHHHHHHHHHhcc---Cceeeeee-ccccccccccchhhceeeEEEEEEEEecc
Confidence            579999999999999999999999999999999999876   67888776 3322   4567899999999999999999


Q ss_pred             CCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEe
Q 009302          162 DGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQII  195 (538)
Q Consensus       162 DGsl~V~v~G~qRfrI~~~~~~~dg~l~AeVeiL  195 (538)
                      ||+++|+++|.+||+|.+ +.+.+||+.|+|++|
T Consensus        78 dg~~~i~v~g~~R~~I~~-~~~~~p~~~a~Ve~l  110 (110)
T d2anea1          78 DGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYL  110 (110)
T ss_dssp             TSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEEC
T ss_pred             CCeEEEEEEEEEEEEEEE-EEcCCCCEEEEEEEC
Confidence            999999999999999998 899999999999975

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=88.94  E-value=0.14  Score=44.71  Aligned_cols=65  Identities=12%  Similarity=0.119  Sum_probs=42.3

Q ss_pred             CCceecccccccccCCCceeeeccCCceeEEeCCCC--ceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCC
Q 009302          430 FDLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHG--CVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICET  507 (538)
Q Consensus       430 ~~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G--~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~  507 (538)
                      ..+..|+.|+.++.+..+-|.=.  .-.-+|..|--  .+-+....+                  -|..=+-+.|+.|+.
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~KfdSg--~GWPSF~~~i~~~~v~~~~d~s------------------~gm~R~Ev~C~~Cg~   99 (144)
T d1l1da_          40 PGIYVDVVSGEPLFSSADKYDSG--CGWPSFTRPIDAKSVTEHDDFS------------------FNMRRTEVRSRAADS   99 (144)
T ss_dssp             SEEEEETTTCCEEEEGGGEECCS--SSSCEESSCSSTTSEEEEEECC------------------TTSCEEEEEETTTCC
T ss_pred             cCceEeccccceeeehhhcccCC--ccceeeccccccccccceeccc------------------ccccceeeEecCCCC
Confidence            34789999999999988866522  22445655431  122211111                  144456799999999


Q ss_pred             CcceeEE
Q 009302          508 HMGWLFT  514 (538)
Q Consensus       508 HlGW~F~  514 (538)
                      |||=-|.
T Consensus       100 HLGHVF~  106 (144)
T d1l1da_         100 HLGHVFP  106 (144)
T ss_dssp             EEEEEES
T ss_pred             ccCcccC
Confidence            9999996

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.15  E-value=0.37  Score=41.78  Aligned_cols=65  Identities=15%  Similarity=0.177  Sum_probs=41.1

Q ss_pred             CceecccccccccCCCceeeeccCCceeEEeCCCCceEEEEEEeeecCceecCCCCcccccCCCCceEEEeCccCCCCcc
Q 009302          431 DLVRCKTCKTAIAKRSDMLVMSSEGPLGAYVNPHGCVHEILTLNKANGLALYGPAETEYSWFPGYAWTVASCSICETHMG  510 (538)
Q Consensus       431 ~~l~C~~C~~~Ia~~~~~~~ms~~g~~~~~vNP~G~v~ei~t~~~a~~~~~~G~ps~e~SWFpGYaW~ia~C~~C~~HlG  510 (538)
                      .+.+|+.|+.++....+-|.=.  ...-+|..|---  .+++.             .++|  .|..=+-+.|+.|+.|||
T Consensus        40 G~Y~C~~C~~pLF~S~~KfdSg--~GWPSF~~~i~~--~v~~~-------------~D~s--~gm~R~Ev~C~~Cg~HLG  100 (143)
T d1xm0a1          40 GLYVDIVSGKPLFTSKDKFDSQ--CGWPSFTKPIEE--EVEEK-------------LDTS--HGMIRTEVRSRTADSHLG  100 (143)
T ss_dssp             EEEEESSTTCEEEETTTCCCCC--SSSCCEEESCCC--SEEEE-------------CCCC--TTCCCCEEEESSCTTCCC
T ss_pred             ceEEeccccchhhhhhhhhccC--Cccceeeccccc--ceEEE-------------ecCC--CCccccceEecCCCCccC
Confidence            4689999999999988865422  224455555211  12211             1111  244446799999999999


Q ss_pred             eeEE
Q 009302          511 WLFT  514 (538)
Q Consensus       511 W~F~  514 (538)
                      =-|.
T Consensus       101 HVF~  104 (143)
T d1xm0a1         101 HVFN  104 (143)
T ss_dssp             EEEE
T ss_pred             ccCC
Confidence            9996