Citrus Sinensis ID: 009307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA
Secondary Structure (PSIPRED)
ccEEEHHHHHHcHHHHHHHHHHHHHHHEEEEEEcccccccccHHHHccHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccEEEEEEEEEccccEEEEEccEEEcccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEEEEEEEEcccccccccccccccEEEEEccccccccccEEEccccccEEEcEEEEEEEcccccEEEEEEEEccccccccccEEEEEEcccccccccEEEEEEccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEccEEEEEEccccccccccccEEEEEccccccccEEEEEEEEEEccccccccccEEEEEEEEHHHHcccccccEEEEccccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEEccccEEEEEEEEEEEccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEEccccEEEEEEEccccHcccccHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEccEcccccEEEEEEEEcccccccccccEEEEEHHHccccccccEEEEccccccccccccccccEEEEEEEEEEEccccccccHHccccccccccccccccccEEEEEEEcccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEEcccccccEEEEEEEEccccccccccccccEEEEEEHHHHHHcccccEEEEcccccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
MGVISTIFGFCGFGVGISSGLVIGYFLFIyfqptdvknpeirplverDSETLQQMlpeiplwvkcpdydrvDWLNKFLELMWPYLDKAICKTAKNIAkpiiaeqipkykiesvefetltlgtlpptfqgmkvyvtdekelimepclkwaanpnvtigVKAFGLKATVQVVDLqvfaqpritlkplvpafpcfANIYVSLMEKPHVDFGLKLVGadlmsipgLYRFVQELIKTQVANmylwpktlevpildpskayrrpvgILHVKVVKAMNlkkkdllgasdpyvklkitedklpskkttvkhknlnpewneeynftvrdpesqaVELAVYDWeqvgkhdkmgmnvvplkeltpeepsvktldllknmdlndgqneksRGQLVVEFIykpfkeedlpksfeesqtvqkapentpaggGLLVVIVHEAqdvegkhhtnpyarilfrgeerktkhvkknrdpRWEEEFQFMleepptndrlhvEVCSvssrigllhpketlgyidinlsdvvsnkrinekyhlidskngRIQIELQWRTA
Flexible Loop (DISEMBL)
MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLpeiplwvkcpdYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETltlgtlpptfqGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLevpildpskayrrPVGILHVKVVKamnlkkkdllgasdpyvklkitedklpskkttvkhknlnpewneeynfTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMdlndgqneksrgQLVVEFIYKPFKEEDLPKSFEESQTVQkapentpagGGLLVVIVHEAqdvegkhhtnpyarilfrgeerktkhvkknrdprWEEEFQFMleepptndrlHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEkyhlidskngriqielqwrta
Low Complexity Region (SEG)
MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA
Disordered region (IsUnstruct)
**VISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVE***ETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT******************EWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVV*********************************QLVVEFIYKPF*************************GGLLVVIVHEAQDVEGKHHTNPYARILFR*******************************DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQ****
Disordered Region (DISOPRED)
MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL*****TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKN*************QLVVEFIYKPFKEEDLP**F*****VQKAPENTPAGGGLLVVI****************ARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA
Disordered Region (DISEMBL)
MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDL**************ENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEER**********PRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA
Disordered Region (DISPRO)
MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE*********************AGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	538	2.2.26 [Sep-21-2011]
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	yes	no	1.0	0.994	0.772	0.0
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.996	0.998	0.724	0.0
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.998	0.994	0.541	1e-168
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.953	0.916	0.301	2e-66
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.970	0.917	0.297	1e-59
Q3TZZ7	845	Extended synaptotagmin-2	yes	no	0.842	0.536	0.244	9e-32
Q3U7R1	1092	Extended synaptotagmin-1	no	no	0.910	0.448	0.250	2e-31
Q5RAG2	1104	Extended synaptotagmin-1	yes	no	0.925	0.451	0.246	3e-31
A0FGR8	921	Extended synaptotagmin-2	yes	no	0.842	0.491	0.240	1e-30
Q9Z1X1	1088	Extended synaptotagmin-1	no	no	0.910	0.450	0.248	1e-30

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/540 (77%), Positives = 479/540 (88%), Gaps = 2/540 (0%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG  STI GFCGFGVGIS GLVIGY LF+Y  P DVK+PEIR + ++D + + +MLPEIP
Sbjct: 1   MGFFSTILGFCGFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           LWVK PD+DRVDW+N+FLE MWPYLDKAICKTAKNIAKPII EQIPKYKI+SVEFETLTL
Sbjct: 61  LWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPPTFQGMKVY+TDEKELIMEPCLKWAANPN+ + +KAFGLKATVQVVDLQVFAQPRI
Sbjct: 121 GSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL GADLMSIPGLYRFVQE IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTL VPILDP+KA+RRPVGI+HVKVV+A+ L+KKDL+G +DP+VK+K++EDK+PSKKTT
Sbjct: 241 PKTLVVPILDPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKHKNLNPEWNEE+ F+VRDP++Q +E +VYDWEQVG  +KMGMNV+ LKE+ P+E    
Sbjct: 301 VKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHKAF 360

Query: 361 TLDLLKNMDLN-DGQ-NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 418
           TL+L K +D   DGQ  +K RG+L VE +YKPF EE++PK FEE+Q VQKAPE TPA GG
Sbjct: 361 TLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEMPKGFEETQAVQKAPEGTPAAGG 420

Query: 419 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDR 478
           +LVVIVH A+DVEGKHHTNPY RI F+GEERKTKHVKKNRDPRW EEF FMLEEPP  ++
Sbjct: 421 MLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEFTFMLEEPPVREK 480

Query: 479 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           LHVEV S SSRIGLLHPKETLGY+DI + DVV+NKR+N+K+HLIDSKNG+IQIEL+WRTA
Sbjct: 481 LHVEVLSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMNQKFHLIDSKNGKIQIELEWRTA 540

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.
Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/538 (72%), Positives = 468/538 (86%), Gaps = 2/538 (0%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG+ISTI G  GFG G + G+VIGY+LFIYFQ TDV++PEI+PLVE DSET+  M PEIP
Sbjct: 1   MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           +WVK PD+DR+DWLNK +  MWPY+DKAICK AK+IAKPIIAEQIP YKI+SVEFE LTL
Sbjct: 61  MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPP+FQGMKVY TD+KE+IME  +KWA NPN+ +  KAFGLKATVQV+DLQV+A PRI
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANI+VSLM+KP VDFGLKL+GAD+M+IPGLYRFVQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTL V I+DPSKA ++PVG+L VKV+KA+ LKKKDLLG SDPYVKL ++ DK+P KKT 
Sbjct: 241 PKTLNVQIMDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTV 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKH NLNPEWNEE++  V++PESQ ++L VYDWEQVGKHDK+GMNV+ LK+LTPEEP + 
Sbjct: 301 VKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLM 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TL+LLK+M+  +  +EKSRGQLVVE  YKPFK++D+P++ ++   V+KAPE TP+ GGLL
Sbjct: 361 TLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           VVIVHEA+D+EGK+HTNP  R+LFRGEERKTK VKKNR+PRW+E+FQF L+EPP ND+LH
Sbjct: 421 VVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SSR  L+HPKETLGY+ INL DVVSN+RIN+KYHLIDSKNGRIQIELQWR +
Sbjct: 481 VEVISSSSR--LIHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQWRNS 536

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/541 (54%), Positives = 392/541 (72%), Gaps = 4/541 (0%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG  +++ G  GF +GI  GL++G+F+ IY QP+  + P  RPLVE     L  +LP+IP
Sbjct: 1   MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           LW+K PDY+RVDW NKF+  MWPYLDKA+C   ++  +P+ A+ I  + IES+EFE L+L
Sbjct: 61  LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           GTLPPT  G+K Y T+EKEL+ EP +KWA NPN+ + +K   L+  VQ+VDLQ FA  R+
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRV 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
            LKPL+P FPCF  + VSLMEKPHVDFGLK++G DLMSIPGLYR+VQE IK QV++MY W
Sbjct: 181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240

Query: 241 PKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKT 299
           P+ LE+PILD S A  ++PVG+LHV +++A NL KKDLLG SDPYVKL +T +KLP+KKT
Sbjct: 241 PQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKT 300

Query: 300 TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359
           T+K +NLNPEWNE +   V+DP SQ ++L V+DW++VG HD++GM ++PL+++ P E   
Sbjct: 301 TIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKE 360

Query: 360 KTLDLLKNMD-LNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 418
             LDL+KN + + D  ++K RG+L V+  Y PF+EE + +  E  +      ++  +  G
Sbjct: 361 FNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAG 420

Query: 419 LLVVIVHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
           LL V V  A+DVEG K H+NPYA +LFRGE++KTK +KK RDPRW EEFQF LEEPP  +
Sbjct: 421 LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKE 480

Query: 478 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 537
            + VEV S  +       KE LG++DINL DVV N RIN+KYHLI+S+NG I IE++W T
Sbjct: 481 SIRVEVMSKGTGFH-FRSKEELGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRWTT 539

Query: 538 A 538
           +
Sbjct: 540 S 540

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  253 bits (647), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 169/561 (30%), Positives = 282/561 (50%), Gaps = 48/561 (8%)

Query: 12  GFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPE----------IPL 61
           GF VG+  GL++G  + I F   +    ++R  +        +M  E           P 
Sbjct: 2   GFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPS 61

Query: 62  WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
           WV   +  ++ WLN  L  +WPY+D+A  +  K   +P++ +  P   + S+ F  LTLG
Sbjct: 62  WVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLTLG 120

Query: 122 TLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQPRI 180
           T+ P F G+ V   D+  + +E  ++W  NPN+ +GVK   G+   +QV ++      R+
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
             +PLV  FPCF  + VSL EK  +DF LK+VG D+ +IPGL   ++E I+  V +   W
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK 298
           P    +PI+  D S    +PVG+L VK+V+A NL  KDL+G SDP+ K+ I   +  +K+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 299 TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
           +   + +LNP WNE + F V D  +Q + + +YD E V   + +G   + L EL P +  
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query: 359 VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK-----------------EEDLPKSFE 401
              L L+K++++   ++ K+RG++ +E +Y P+                  E  L     
Sbjct: 361 DVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTT 418

Query: 402 ESQTVQKAPENTPAGGGLLVVIVHEA-----QDVEGKHHTNPYARILFR--GEERKTKHV 454
           + +             G+L V V  A     QD+ GK   +PY  +  +  G + KT+ V
Sbjct: 419 DEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGK--ADPYVVLSMKKSGAKSKTRVV 476

Query: 455 KKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 514
             + +P W + F F++E+   +D L +EV    +       K+ +G   + L+ V+  + 
Sbjct: 477 NDSLNPVWNQTFDFVVED-GLHDMLVLEVWDHDT-----FGKDYIGRCILTLTRVIMEEE 530

Query: 515 INEKYHLIDSKNGRIQIELQW 535
             + Y L +SK G++Q+ L+W
Sbjct: 531 YKDWYPLDESKTGKLQLHLKW 551

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 170/572 (29%), Positives = 287/572 (50%), Gaps = 50/572 (8%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKN--PEIRPLVERDSETLQQMLPE 58
           MG +  +F     G+ +S GLV+ +  +   + T   +    I        +  +++LP 
Sbjct: 1   MGFLFGLF----IGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPG 56

Query: 59  --IPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFE 116
              P WV      +++WLN  LE +WPY+++A  +  K+  +P++ +  P   + S++F 
Sbjct: 57  DFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFS 115

Query: 117 TLTLGTLPPTFQGMKVYVTDE--KELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQ 173
             TLGT+ P F G+ +  ++     + ME  ++W  NP + + VK   G+   ++V ++ 
Sbjct: 116 KFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIG 175

Query: 174 VFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQ 233
                R+  KPLV  FPCF  +  SL EK  +DF LK++G +L SIPG+   ++E I+  
Sbjct: 176 FTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDA 235

Query: 234 VANMYLWPKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE 291
           + +   WP    +PIL  D S    +PVG L VKVV+A +L  KD++G SDPY  + I  
Sbjct: 236 IEDSITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRP 295

Query: 292 DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 351
               +KKT     +LNP WNE + F V D  +Q + + V+D E VG    +G   VPL E
Sbjct: 296 LPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNE 355

Query: 352 LTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF-KEEDLPKSF--EESQTVQK 408
           L P +     L L+K++++   ++ K+RGQ+ +E +Y P  KE  L   F  + S T+ +
Sbjct: 356 LVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILE 413

Query: 409 ---APENTPAGG-----------------GLLVVIVHEAQD---VEGKHHTNPYARILFR 445
               PE+  +                   G+L V V  A+D   V+     + +  I  +
Sbjct: 414 KVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLK 473

Query: 446 GEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYID 503
             E   KT+ V  + +P W + F F++E+   +D L +EV     + G    K+ +G + 
Sbjct: 474 KSETKSKTRVVPDSLNPVWNQTFDFVVED-ALHDLLTLEVWD-HDKFG----KDKIGRVI 527

Query: 504 INLSDVVSNKRINEKYHLIDSKNGRIQIELQW 535
           + L+ V+      E + L  +K+G++ + L+W
Sbjct: 528 MTLTRVMLEGEFQEWFELDGAKSGKLCVHLKW 559

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1

 Score =  138 bits (348), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 239/498 (47%), Gaps = 45/498 (9%)

Query: 58  EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
           ++P WV  PD +R +WLNK ++ MWP++ + I K  +   +P +  +     + +  F  
Sbjct: 106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANAHLSTFSFTK 163

Query: 118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
           + +G  P    G+KVY    D++++I++  + +  N  + + +K +  +A V+ +  Q+ 
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSI--QIH 221

Query: 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVA 235
              R+ L+PL+   P    + +  + KP ++     +  +L+ IPGL      +I   ++
Sbjct: 222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIIS 280

Query: 236 NMYLWPKTLEVPILDPSKAYRR----PVGILHVKVVKAMNLKKKD------LLGASDPYV 285
           N  + P  + VP++   +  +     P G+L +  ++A +L+ KD      + G SDPY 
Sbjct: 281 NYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 340

Query: 286 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 345
            +++      SK   V  +NL+P+WNE Y   V +   Q +E+ ++D E   K D +G  
Sbjct: 341 IIRVGNQIFQSK---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 396

Query: 346 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQT 405
           ++ L E+  E    + LD    +D    +  K +  L +E++       +L K   + + 
Sbjct: 397 MIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLKLEWLTLMPDAANLDKVLADIRA 448

Query: 406 VQKAPENTPAGGGLLVVIVHEAQDV-EGK---HHTNPYARILFRGEERKTKHVKKNRDPR 461
             K   +      LL++ +  A+++  GK    + NP  ++    + +++K   K  +P 
Sbjct: 449 -DKDQASDGLSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIRYKTSEPV 507

Query: 462 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKY 519
           WEE F F +  P   D L VEV     +        +LG + I LS +++  N  IN+++
Sbjct: 508 WEENFTFFIHNPRRQD-LEVEVKDEQHQC-------SLGSLRIPLSQLLTSDNMTINQRF 559

Query: 520 HLIDSK-NGRIQIELQWR 536
            L +S  N  +++++  R
Sbjct: 560 QLSNSGPNSTLKMKIALR 577

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 138/551 (25%), Positives = 248/551 (45%), Gaps = 61/551 (11%)

Query: 18  SSGLVIGYFLF---IYFQPTDVKNPEIRPLV---------ER-DSETLQQMLPEIPLWVK 64
           ++GL +G+ LF   +Y     V++ + R L          ER  +ETL     E+P WV 
Sbjct: 63  AAGLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAWVS 122

Query: 65  CPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124
            PD ++ +WLNK +  +WP+L + + K       P +    P   +++  F  + LG  P
Sbjct: 123 FPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANP--HLQTFTFTRVELGEKP 180

Query: 125 PTFQGMKVYVTDEK-ELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLK 183
               G+KV+ +  K +++++  + +  +  + + VK +  KA V+   +Q+    R+ L+
Sbjct: 181 LRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKAGVK--GMQLHGVLRVILE 238

Query: 184 PLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKT 243
           PL    P    + +  +++P +D     +  +L+ IPGL      +I   +A   + P  
Sbjct: 239 PLTGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFLVLPNR 297

Query: 244 LEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITED 292
           L VP+   L      R P+  GI+ + ++ A  L  KD      + G SDPY  +++   
Sbjct: 298 LLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQ 357

Query: 293 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
              S+   V  + LNP W E Y   V +   Q +E+ V+        DK       L  +
Sbjct: 358 TFCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVF--------DKDPDKDDFLGRM 406

Query: 353 TPEEPSVKTLDLLKN-MDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 411
             +   V    +L N   L  GQ +     L +E++      E L +  + ++ +   PE
Sbjct: 407 KLDVGKVLQAGVLDNWYPLQGGQGQV---HLRLEWLSLLPDAEKLDQVLQWNRGITSRPE 463

Query: 412 NTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 468
             P    +LVV +  AQD+   +G    NP  ++  +   R++K       P WEE F+F
Sbjct: 464 --PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTRESKATYSTNSPVWEEAFRF 521

Query: 469 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVV--SNKRINEKYHLIDSK- 525
            L++P + + L V+V   S  +       TLG + + L+ ++  S   +++ + L  S  
Sbjct: 522 FLQDPRSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTASELTLDQWFQLSSSGP 573

Query: 526 NGRIQIELQWR 536
           N R+ ++L  R
Sbjct: 574 NSRLYMKLVMR 584

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2

 Score =  137 bits (344), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/555 (24%), Positives = 248/555 (44%), Gaps = 57/555 (10%)

Query: 10  FCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLV----------ERDSETLQQMLPEI 59
           +    VG+S G V+ + L +Y     V++ + R L           +  ++TL     E+
Sbjct: 69  YLAGAVGLSVGFVL-FGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTLYMSHREL 127

Query: 60  PLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLT 119
           P WV  PD ++ +WLNK +  +WP+L + + K       P +    P   +++  F  + 
Sbjct: 128 PAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNP--HLQTFTFTRVE 185

Query: 120 LGTLPPTFQGMKVYVTDEKE-LIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQP 178
           LG  P    G+KV+    KE ++++  + +  +  + + VK +  KA V+   +Q+    
Sbjct: 186 LGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVK--GMQLHGVL 243

Query: 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMY 238
           R+ L+PL+   P    + +  + +P +D     +  +L+ IPGL      +I   +A   
Sbjct: 244 RVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFL 302

Query: 239 LWPKTLEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKL 287
           + P  L VP+   L      R P+  GI+ + ++ A  L  KD      + G SDPY  +
Sbjct: 303 VLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPYALV 362

Query: 288 KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVV 347
           ++      S+   V  + LNP+W E Y   V +   Q +E+ V+D +         M + 
Sbjct: 363 RLGTQTFCSR---VIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFLGRMKLD 419

Query: 348 PLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQ 407
             K L         LD     D    Q  + +  L +E++      E L +  + +Q V 
Sbjct: 420 VGKVL-----QAGVLD-----DWFPLQGGQGQVHLRLEWLSLLSDAEKLEQVLQWNQGVS 469

Query: 408 KAPENTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEE 464
             PE  P    +LVV +  AQD+   +G    NP  ++  +   +++K V     P WEE
Sbjct: 470 SRPE--PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESKAVYSTNCPVWEE 527

Query: 465 EFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR--INEKYHLI 522
            F+F L++P + + L V+V   S  +       TLG + + L+ +++     +++ + L 
Sbjct: 528 AFRFFLQDPQSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTAPELILDQWFQLS 579

Query: 523 DSK-NGRIQIELQWR 536
            S  N R+ ++L  R
Sbjct: 580 SSGPNSRLYMKLVMR 594

May play a role as calcium-regulated intrinsic membrane protein.

Pongo abelii (taxid: 9601)

>sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 241/498 (48%), Gaps = 45/498 (9%)

Query: 58  EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
           ++P WV  PD +R +WLNK ++ MWP++ + I K  +   +P +  +     + +  F  
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANTHLSTFSFTK 239

Query: 118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
           + +G  P    G+KVY    D++++I++  + +  N  + + +K +  +A V+ +  Q+ 
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSI--QIH 297

Query: 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVA 235
              R+ L+PL+   P    + +  + KP ++     +  +L+ +PGL      +I   ++
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDVPGLNGLSDTIILDIIS 356

Query: 236 NMYLWPKTLEVPILDPSK--AYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYV 285
           N  + P  + VP++   +    R PV  G+L +  ++A +L+ KD      + G SDPY 
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416

Query: 286 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 345
            +++      S+   V  +NL+P+WNE Y   V +   Q +E+ ++D E   K D +G  
Sbjct: 417 IIRVGNQIFQSR---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 472

Query: 346 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQT 405
           ++ L E+  E    + LD    +D    +  K +  L +E++       +L K   + + 
Sbjct: 473 MIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLRLEWLTLMPNASNLDKVLTDIK- 523

Query: 406 VQKAPENTPAGGGLLVVIVHEAQDV-EGK---HHTNPYARILFRGEERKTKHVKKNRDPR 461
             K   N      LL++ +  A+++  GK    + NP  ++    + +++K   K  +P 
Sbjct: 524 ADKDQANDGLSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTNEPV 583

Query: 462 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK--RINEKY 519
           WEE F F +  P   D L VEV     +        +LG + + LS +++++   +++++
Sbjct: 584 WEENFTFFIHNPKRQD-LEVEVRDEQHQC-------SLGNLKVPLSQLLTSEDMTVSQRF 635

Query: 520 HLIDSK-NGRIQIELQWR 536
            L +S  N  I++++  R
Sbjct: 636 QLSNSGPNSTIKMKIALR 653

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/551 (24%), Positives = 249/551 (45%), Gaps = 61/551 (11%)

Query: 18  SSGLVIGYFLF---IYFQPTDVKNPEIRPLV---------ER-DSETLQQMLPEIPLWVK 64
           ++GL +G+ LF   +Y     V++ + R L          ER  +ETL     E+P WV 
Sbjct: 65  AAGLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAWVS 124

Query: 65  CPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124
            PD ++ +WLNK +  +WP+L + + K       P +    P   +++  F  + LG  P
Sbjct: 125 FPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANP--HLQTFTFTRVELGEKP 182

Query: 125 PTFQGMKVYVTDEK-ELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLK 183
               G+KV+ +  K +++++  + +  +  + + VK +  KA V+   +Q+    R+ L+
Sbjct: 183 VRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKAGVK--GMQLHGVLRVILE 240

Query: 184 PLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKT 243
           PL+   P    + +  +++P +D     +  +L+ IPGL      +I   +A   + P  
Sbjct: 241 PLIGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFLVLPNR 299

Query: 244 LEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITED 292
           L VP+   L      R P+  GI+ + ++ A  L  KD      + G SDPY  +++   
Sbjct: 300 LLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQ 359

Query: 293 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
              S+   V  + LNP W E Y   V +   Q +E+ V+        DK       L  +
Sbjct: 360 TFCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVF--------DKDPDKDDFLGRM 408

Query: 353 TPEEPSVKTLDLLKN-MDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 411
             +   V    +L N   L  GQ +     L +E++      E L +  + ++ +   PE
Sbjct: 409 KLDVGKVLQAGVLDNWYPLQGGQGQV---HLRLEWLSLLPDAEKLDQVLQWNRGITSRPE 465

Query: 412 NTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 468
             P    +LVV +  AQD+   +G    NP  ++  +   +++K       P WEE F+F
Sbjct: 466 --PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTQESKATYSTNCPVWEEAFRF 523

Query: 469 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVV--SNKRINEKYHLIDSK- 525
            L++P + + L V+V   S  +       TLG + + L+ ++  S   +++ + L  S  
Sbjct: 524 FLQDPRSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTASELTLDQWFQLSSSGP 575

Query: 526 NGRIQIELQWR 536
           N R+ ++L  R
Sbjct: 576 NSRLYMKLVMR 586

May play a role as calcium-regulated intrinsic membrane protein.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
225457921	539	PREDICTED: extended synaptotagmin-2 isof	1.0	0.998	0.828	0.0
224080620	538	plant synaptotagmin [Populus trichocarpa	0.998	0.998	0.827	0.0
359492268	538	PREDICTED: extended synaptotagmin-2 isof	0.998	0.998	0.817	0.0
356538638	539	PREDICTED: extended synaptotagmin-3-like	0.996	0.994	0.828	0.0
224103201	523	plant synaptotagmin [Populus trichocarpa	0.970	0.998	0.821	0.0
356544874	539	PREDICTED: extended synaptotagmin-2-B-li	0.998	0.996	0.821	0.0
449469877	539	PREDICTED: synaptotagmin-2-like [Cucumis	1.0	0.998	0.795	0.0
224061983	538	predicted protein [Populus trichocarpa]	1.0	1.0	0.802	0.0
147816784	539	hypothetical protein VITISV_031706 [Viti	1.0	0.998	0.821	0.0
356564373	538	PREDICTED: extended synaptotagmin-2-like	0.998	0.998	0.795	0.0

>gi|225457921|ref|XP_002272757.1| PREDICTED: extended synaptotagmin-2 isoform 1 [Vitis vinifera] gi|302142694|emb|CBI19897.3| unnamed protein product [Vitis vinifera]

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/538 (82%), Positives = 501/538 (93%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1   MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
            WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61  QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPPTFQGMKVY TDEKELIME  +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKD++GASDPYVK+K++EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKHKNLNPEWNEE+N  V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V 
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TLDLLKNMD ND QNEKSRGQ+V+E +YKPFK+ ++PK  E+   ++KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           V+IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+VKKNRDPRWEEEFQFMLEEPPTNDR+H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SSR+GLLHPKETLGY+DINLSDVVSNKRINEKYHLIDSKNG+IQIELQWRT+
Sbjct: 481 VEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 538

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080620|ref|XP_002306182.1| plant synaptotagmin [Populus trichocarpa] gi|222849146|gb|EEE86693.1| plant synaptotagmin [Populus trichocarpa]

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/538 (82%), Positives = 500/538 (92%), Gaps = 1/538 (0%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG  STI GFCGFGVGIS+GL IGY+LFIYFQP+DVK+PE+RPLVE DSETLQ+MLPEIP
Sbjct: 1   MGFFSTILGFCGFGVGISTGLTIGYYLFIYFQPSDVKDPEVRPLVEHDSETLQRMLPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           LWVK PD+DR+DWLN+F++LMWPYLDKAICKTA+NIAKPIIAEQIPKYKI++VEFETLTL
Sbjct: 61  LWVKNPDHDRIDWLNRFIQLMWPYLDKAICKTAENIAKPIIAEQIPKYKIDAVEFETLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           GTLPPTF GMKVYVTDEKELIMEPC+KWA NPNVT+ VKAFGLKAT QVVDLQVFA PRI
Sbjct: 121 GTLPPTFHGMKVYVTDEKELIMEPCIKWAGNPNVTVAVKAFGLKATAQVVDLQVFASPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPGLYR VQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADLMSIPGLYRVVQEIIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEVPILDP+KA +RPVGIL VKV++AM LKKKDL+GA+DPYVK+K+TEDKLP+KKTT
Sbjct: 241 PKTLEVPILDPAKAMKRPVGILSVKVLRAMKLKKKDLMGAADPYVKVKLTEDKLPAKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKHKNLNPEWNEE++  V+DPESQA+EL VYDWEQVGKHDKMGMNVVPLKELTPEEP + 
Sbjct: 301 VKHKNLNPEWNEEFHVVVKDPESQALELRVYDWEQVGKHDKMGMNVVPLKELTPEEPKIM 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TL+LLKNMDLND QNEKSRGQL+VE  YKPFKE+D+  SF+E Q  QKAPE TPAGGGLL
Sbjct: 361 TLELLKNMDLNDPQNEKSRGQLMVELTYKPFKEDDVNLSFKE-QVEQKAPEGTPAGGGLL 419

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           +VIVHEAQDVEGKHHTNPY R+LFRGEE++TKHVKKNRDPRWE+EFQ+ L++PP+N++LH
Sbjct: 420 LVIVHEAQDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWEDEFQYTLDKPPSNEKLH 479

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SS IGLLHPKE+LGY+DINL+DVV+N+R N KYHLIDSKNG+IQIELQWR A
Sbjct: 480 VEVISTSSGIGLLHPKESLGYVDINLTDVVNNRRTNGKYHLIDSKNGQIQIELQWRPA 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492268|ref|XP_003634391.1| PREDICTED: extended synaptotagmin-2 isoform 2 [Vitis vinifera]

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/538 (81%), Positives = 495/538 (92%), Gaps = 1/538 (0%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1   MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
            WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61  QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPPTFQGMKVY TDEKELIME  +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKD++GASDPYVK+K++EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKHKNLNPEWNEE+N  V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V 
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TLDLLKNMD ND QNEKSRGQ+V+E +YKPFK+ ++PK  E+   ++KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           V+IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+VKKNRDPRWEEEFQFMLEEPPTNDR+H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SS     H +ETLGY+DINLSDVVSNKRINEKYHLIDSKNG+IQIELQWRT+
Sbjct: 481 VEVVSTSSSF-FFHKQETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538638|ref|XP_003537808.1| PREDICTED: extended synaptotagmin-3-like [Glycine max]

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/537 (82%), Positives = 490/537 (91%), Gaps = 1/537 (0%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG   TI GF GFGVGIS GLV GYFLFIYFQPT+V++PEI+PL E++ ETLQ+M PEIP
Sbjct: 1   MGFFGTILGFLGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPLAEQEQETLQRMFPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           LW+K PD+DR+DWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61  LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPPTFQGMKVYVTDEKELIMEP +KWAANPNVT+ VKAFGLKATVQVVDLQVF  PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAANPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPG+YR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEV +LD SKA +RPVGILHVKV++A+ LKKKDLLGASDPYVKLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAIKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKHKNLNPEWNEE+N  V+DP+SQ +E+ VYDWEQVGKHDKMGMNV+PLKE++PEE    
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPDSQVLEINVYDWEQVGKHDKMGMNVIPLKEVSPEETKRF 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           +LDLLKNMD ND QNEKSRGQ+VVE  YKPFKEEDL K FEE+QTV KAPE TPAGGGLL
Sbjct: 361 SLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           VVIVHEAQDVEGK+HTNP+ R++FRGEE+KTK +KKNRDPRWE+EFQFM+EEPPTNDRLH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFQFMVEEPPTNDRLH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 537
           VEV S SSR  LLH KE LGYIDINL DVV+NKRINEKYHLIDSKNGR+QIELQWRT
Sbjct: 481 VEVVSTSSR-NLLHQKEPLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRT 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103201|ref|XP_002312964.1| plant synaptotagmin [Populus trichocarpa] gi|222849372|gb|EEE86919.1| plant synaptotagmin [Populus trichocarpa]

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/538 (82%), Positives = 486/538 (90%), Gaps = 16/538 (2%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG +STI GFCGFGVG+S+GL IGY+LFIYFQPTDVK+PE+RPL E+DSETLQ++LPEIP
Sbjct: 1   MGFLSTISGFCGFGVGLSTGLTIGYYLFIYFQPTDVKDPEVRPLAEQDSETLQRILPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           LWVK PDYDR+DWLN+F++LMWPYLDKAICKT KNIAKPIIAEQIPKYKI++VEFETLTL
Sbjct: 61  LWVKNPDYDRIDWLNRFIQLMWPYLDKAICKTVKNIAKPIIAEQIPKYKIDAVEFETLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           GTLPPTF GMKVYVTDEKELIMEPC+KWA NPNVT+ VKAFGLKAT QVVDLQVFA PRI
Sbjct: 121 GTLPPTFHGMKVYVTDEKELIMEPCIKWAGNPNVTVAVKAFGLKATAQVVDLQVFASPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPGLYR VQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADLMSIPGLYRVVQEIIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEVPILDP+               KAM LKKKDL+GASDPYVK+K+TEDKLP+KKTT
Sbjct: 241 PKTLEVPILDPA---------------KAMKLKKKDLMGASDPYVKIKLTEDKLPAKKTT 285

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKHKNLNPEWNEE+N  V+DPESQA+EL VYDWEQVGKHD+MGMNVVPLK+LTPEEP V 
Sbjct: 286 VKHKNLNPEWNEEFNLVVKDPESQALELRVYDWEQVGKHDRMGMNVVPLKDLTPEEPKVM 345

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TLDLLKNMDLND QNEKSRGQL+VE  YKPFKE+DL KSF++ +  QKAPE TPAGGGLL
Sbjct: 346 TLDLLKNMDLNDPQNEKSRGQLMVELTYKPFKEDDLNKSFKD-EVEQKAPEGTPAGGGLL 404

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           VV +HEAQDVEGKHHTNPY R+LFRGEE KTK VKKNRDPRWEEEFQF LEEPP N +LH
Sbjct: 405 VVTIHEAQDVEGKHHTNPYVRLLFRGEEMKTKRVKKNRDPRWEEEFQFTLEEPPVNAKLH 464

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SSRIGLLHPKE+LGY++INLSDVVSN+RINE+YHLIDSKNG+IQIELQWR A
Sbjct: 465 VEVVSTSSRIGLLHPKESLGYVEINLSDVVSNRRINERYHLIDSKNGKIQIELQWRPA 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544874|ref|XP_003540872.1| PREDICTED: extended synaptotagmin-2-B-like [Glycine max]

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/538 (82%), Positives = 490/538 (91%), Gaps = 1/538 (0%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG   TI GF GFGVGIS GLV GYFLFIYFQPT+V++PEI+PL E++ ETLQ+M PEIP
Sbjct: 1   MGFFGTILGFLGFGVGISIGLVSGYFLFIYFQPTNVEDPEIKPLSEQEQETLQRMFPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           LW+K PD+DR+DWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61  LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPPTFQGMKV+VTDEKELIMEP +KWA NPNVT+ VKAFGLKATVQVVDLQVF  PRI
Sbjct: 121 GSLPPTFQGMKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPG+YR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEV +LD SKA +RPVGILHVKV++AM LKKKDLLGASDPYVKLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKH NLNPEWNEE+N  V+DP+SQ +E+ VYDWEQVGK DKMGMNV+PLKE++PEEP   
Sbjct: 301 VKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRF 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TLDLLKNMD ND QNEKSRGQ+VVE  YKPFKEEDL K FEE+QTV KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           VVIVHEAQDVEGK+HTNP+ R++FRG+E+KTK +KKNRDPRWE+EFQFM++EPPTNDRLH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SSR  LLH KE+LGYIDINL DVV+NKRINEKYHLIDSKNGR+QIELQWRT+
Sbjct: 481 VEVVSTSSR-NLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTS 537

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469877|ref|XP_004152645.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus] gi|449503958|ref|XP_004162238.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/538 (79%), Positives = 492/538 (91%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG++S+I GF GFG+G S GLV GY++FIYFQP+DVK+P +RPLVE+DS +L +M+PEIP
Sbjct: 1   MGLLSSILGFFGFGLGTSIGLVAGYYMFIYFQPSDVKDPVVRPLVEQDSASLLRMMPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
           LWVK PDYDRVDWLNKFLE+MWPYLDKAICKT +NIAKPIIAEQIPKYKI++VEF+TLTL
Sbjct: 61  LWVKNPDYDRVDWLNKFLEIMWPYLDKAICKTVRNIAKPIIAEQIPKYKIDAVEFDTLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G LPPT QGMKVY+TD+KELIMEPC+KWA NPNVT+ VKAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GCLPPTLQGMKVYMTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFA I+VSLMEKPHVDFGLKL+GAD MSIPGLYRFVQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEV I+DP+ A ++PVGILHVKV++A+ LKKKDL GASDPY+KLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQIMDPANAMKKPVGILHVKVLRALKLKKKDLFGASDPYLKLKLTEDKLPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKH NLNP WNEE+ F V+DPESQA+E+ +YDWEQVGKHDKMGMNVVPLKELTPEE    
Sbjct: 301 VKHTNLNPVWNEEFTFVVKDPESQALEMILYDWEQVGKHDKMGMNVVPLKELTPEESKEF 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TLD+LKNMD ND QNEKSRGQ+VVE +YKPFK+++  KS ++++ VQKAP+ TPAGGGLL
Sbjct: 361 TLDVLKNMDPNDTQNEKSRGQIVVEMLYKPFKDDEALKSVDDAEAVQKAPDGTPAGGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           V+++H+A+DVEGKHHTNPY R+LFRGEE++TKHVKKNRDPRW+EEFQF LEEPP ND++H
Sbjct: 421 VIMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFTLEEPPVNDKIH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SSRIGLLHPKETLGY+DINL+DVVSNKRIN KYHLIDSKNGRIQIELQWRT+
Sbjct: 481 VEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTS 538

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061983|ref|XP_002300696.1| predicted protein [Populus trichocarpa] gi|222842422|gb|EEE79969.1| predicted protein [Populus trichocarpa]

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/538 (80%), Positives = 490/538 (91%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG++S+I GFCGFG+G S G+VIGY++FIYFQPTDVK+P +RPL+E+DS+TL ++LPEIP
Sbjct: 1   MGILSSILGFCGFGIGTSIGIVIGYYMFIYFQPTDVKDPVLRPLIEQDSKTLLRLLPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
            WVK PDYDRVDWLNK +E MWPY++ AICKTA+NIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61  QWVKNPDYDRVDWLNKLIENMWPYINTAICKTARNIAKPIIAEQIPKYKIDSVEFETLTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPP F GMKVYVTDEKELIMEP LKWA NP++TI VKAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GSLPPNFPGMKVYVTDEKELIMEPVLKWAGNPDITIAVKAFGLKATVQVVDLQVFAAPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPL+P FPCFANIYVSL+EKPHVDFGLKL+GAD MSIPGLY+FVQELIK QVANMYLW
Sbjct: 181 TLKPLLPVFPCFANIYVSLLEKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PK L VPI+DPSKA +RPVGIL VKV++AM LKKKDLLGASDPYVKLK+TEDK  S KTT
Sbjct: 241 PKCLVVPIMDPSKAMKRPVGILTVKVLRAMKLKKKDLLGASDPYVKLKLTEDKHHSNKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VKHKNLNPEWNEE+N TV+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP++P V 
Sbjct: 301 VKHKNLNPEWNEEFNITVKDPESQALEVLVYDWEQVGKHDKMGMNVIPLKELTPDDPKVL 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TLDLLKNMD ND QNEKSRGQ+VVE +YKPFKE+++PK  ++   V KAPE TPAGGGL 
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVVELVYKPFKEDEIPKDIDDPNAVAKAPEGTPAGGGLF 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           VVIVHEAQDVEGKHHTNPYAR+LF+GEE++TK VKK+RDPRWEEEFQF+LEE PTN+RLH
Sbjct: 421 VVIVHEAQDVEGKHHTNPYARLLFKGEEKRTKQVKKSRDPRWEEEFQFVLEEAPTNERLH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SSR+GLLHPKE LGY+ INL+DVV+NKRINEKYHLIDSKNGRIQ+ELQWRT+
Sbjct: 481 VEVVSSSSRMGLLHPKENLGYVVINLADVVNNKRINEKYHLIDSKNGRIQVELQWRTS 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816784|emb|CAN71066.1| hypothetical protein VITISV_031706 [Vitis vinifera]

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/538 (82%), Positives = 494/538 (91%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1   MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
            WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61  QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPPTFQGMKVY TDEKELIME  +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKDL+GASDPYVK+K+ EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDLMGASDPYVKMKLXEDKLPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VK KNLNPEWNEE+N  V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V 
Sbjct: 301 VKXKNLNPEWNEEFNMVVKDPESQALEVXVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TLDLLKN D ND QNEKSRGQ+V+E +YKPFK+ ++PK  E+   ++KAP  TPAGGGLL
Sbjct: 361 TLDLLKNXDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPXGTPAGGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           V IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+ KKNRDPRWEEEF FMLEEPPTNDR+H
Sbjct: 421 VXIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYXKKNRDPRWEEEFXFMLEEPPTNDRIH 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
           VEV S SSR+GLLHPKETLGY+DINLSDVVSNKRINEKYHLIDSKNG+IQIELQWRT+
Sbjct: 481 VEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 538

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564373|ref|XP_003550429.1| PREDICTED: extended synaptotagmin-2-like [Glycine max]

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/537 (79%), Positives = 488/537 (90%)

Query: 1   MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
           MG++STI  F GFGVG S GLVIGY+LFIYFQPTDVK+P I+PLVE+D++TLQ +LPEIP
Sbjct: 1   MGILSTIASFFGFGVGTSIGLVIGYYLFIYFQPTDVKDPVIQPLVEQDAKTLQLLLPEIP 60

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
            W+K PDYDR+DWLNKF+  MWPYLDKAICKTA++IAKPIIAEQIPKYKI+SVEFE L+L
Sbjct: 61  TWIKNPDYDRLDWLNKFILYMWPYLDKAICKTARSIAKPIIAEQIPKYKIDSVEFEELSL 120

Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
           G+LPPTFQGMKVYVTDEKELIMEP +KWA NPN+ + +KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNIIVAIKAFGLRATVQVVDLQVFAAPRI 180

Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
           TLKPLVP+FPCFANIY+SLMEKPHVDFGLKL+GAD MSIPGLYR VQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYMSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVANMYLW 240

Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
           PK LEV I+DP+KA + PVGILHVKVV+A  LKKKDLLGASDPYVKLK+TE+KLPSKKTT
Sbjct: 241 PKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTT 300

Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           VK+KNLNPEWNEE+N  V+DPESQ +EL VYDWEQ+GKHDKMGMNV+PLKE+TP+EP V 
Sbjct: 301 VKYKNLNPEWNEEFNVVVKDPESQVLELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKVV 360

Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
           TL+LLK MD ND +NEK RGQL VE +YKPFKE++LP+S E+S  ++KAPE TPA GGLL
Sbjct: 361 TLNLLKTMDPNDPENEKLRGQLTVEVLYKPFKEDELPQSTEDSNAIEKAPEGTPASGGLL 420

Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           V+IVHEA+DVEGKHHTNPY R+LF+GEERKTKHVKKNRDPRW E FQFMLEEPPTN+RL+
Sbjct: 421 VIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLY 480

Query: 481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 537
           VEV S SS++GLLHPKE+LGY+DI LSDVV+NKRINEKYHLIDS+NGRIQIELQWRT
Sbjct: 481 VEVQSASSKLGLLHPKESLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRT 537

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.996	0.998	0.724	6e-222
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.998	0.994	0.541	4.3e-164
TAIR|locus:2047027	256	AT2G21010 "AT2G21010" [Arabido	0.472	0.992	0.660	1.4e-94
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.723	0.683	0.330	4.2e-63
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.700	0.673	0.335	2.8e-57
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.760	0.801	0.310	2.1e-54
FB|FBgn0039208	849	Esyt2 [Drosophila melanogaster	0.853	0.540	0.250	1.9e-38
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.840	0.633	0.244	2.6e-36
MGI|MGI:1261845	845	Esyt2 "extended synaptotagmin-	0.840	0.534	0.250	3e-34
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.916	0.446	0.254	3.3e-34

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 2143 (759.4 bits), Expect = 6.0e-222, P = 6.0e-222
 Identities = 390/538 (72%), Positives = 468/538 (86%)

Query:     1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
             MG+ISTI G  GFG G + G+VIGY+LFIYFQ TDV++PEI+PLVE DSET+  M PEIP
Sbjct:     1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIP 60

Query:    61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
             +WVK PD+DR+DWLNK +  MWPY+DKAICK AK+IAKPIIAEQIP YKI+SVEFE LTL
Sbjct:    61 MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120

Query:   121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
             G+LPP+FQGMKVY TD+KE+IME  +KWA NPN+ +  KAFGLKATVQV+DLQV+A PRI
Sbjct:   121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRI 180

Query:   181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
             TLKPLVP+FPCFANI+VSLM+KP VDFGLKL+GAD+M+IPGLYRFVQE+IK QVANMYLW
Sbjct:   181 TLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLW 240

Query:   241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
             PKTL V I+DPSKA ++PVG+L VKV+KA+ LKKKDLLG SDPYVKL ++ DK+P KKT 
Sbjct:   241 PKTLNVQIMDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTV 300

Query:   301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
             VKH NLNPEWNEE++  V++PESQ ++L VYDWEQVGKHDK+GMNV+ LK+LTPEEP + 
Sbjct:   301 VKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLM 360

Query:   361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
             TL+LLK+M+  +  +EKSRGQLVVE  YKPFK++D+P++ ++   V+KAPE TP+ GGLL
Sbjct:   361 TLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLL 420

Query:   421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
             VVIVHEA+D+EGK+HTNP  R+LFRGEERKTK VKKNR+PRW+E+FQF L+EPP ND+LH
Sbjct:   421 VVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLH 480

Query:   481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 538
             VEV S SSR  L+HPKETLGY+ INL DVVSN+RIN+KYHLIDSKNGRIQIELQWR +
Sbjct:   481 VEVISSSSR--LIHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQWRNS 536

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 293/541 (54%), Positives = 392/541 (72%)

Query:     1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
             MG  +++ G  GF +GI  GL++G+F+ IY QP+  + P  RPLVE     L  +LP+IP
Sbjct:     1 MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP 60

Query:    61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
             LW+K PDY+RVDW NKF+  MWPYLDKA+C   ++  +P+ A+ I  + IES+EFE L+L
Sbjct:    61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120

Query:   121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
             GTLPPT  G+K Y T+EKEL+ EP +KWA NPN+ + +K   L+  VQ+VDLQ FA  R+
Sbjct:   121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRV 180

Query:   181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
              LKPL+P FPCF  + VSLMEKPHVDFGLK++G DLMSIPGLYR+VQE IK QV++MY W
Sbjct:   181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240

Query:   241 PKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKT 299
             P+ LE+PILD S A  ++PVG+LHV +++A NL KKDLLG SDPYVKL +T +KLP+KKT
Sbjct:   241 PQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKT 300

Query:   300 TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359
             T+K +NLNPEWNE +   V+DP SQ ++L V+DW++VG HD++GM ++PL+++ P E   
Sbjct:   301 TIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKE 360

Query:   360 KTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 418
               LDL+KN ++  D  ++K RG+L V+  Y PF+EE + +  E  +      ++  +  G
Sbjct:   361 FNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAG 420

Query:   419 LLVVIVHEAQDVEGKH-HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
             LL V V  A+DVEGK  H+NPYA +LFRGE++KTK +KK RDPRW EEFQF LEEPP  +
Sbjct:   421 LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKE 480

Query:   478 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 537
              + VEV S  +       KE LG++DINL DVV N RIN+KYHLI+S+NG I IE++W T
Sbjct:   481 SIRVEVMSKGTGFHF-RSKEELGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRWTT 539

Query:   538 A 538
             +
Sbjct:   540 S 540

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)]

 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 173/262 (66%), Positives = 214/262 (81%)

Query:   278 LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337
             +G  +PYV+++++EDK+ SKKTTVKHKNLNPEWNEE+ F+VRDP++Q +E  VY WE++G
Sbjct:     1 MGMINPYVQIELSEDKISSKKTTVKHKNLNPEWNEEFKFSVRDPKTQVLEFNVYGWEKIG 60

Query:   338 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND-GQNEKSRGQLVVEFIYKPFKEEDL 396
             KHDKMGMNV+ LKEL P+E    TL+L K +D  + GQ  K RG+L VE +YKPF EE++
Sbjct:    61 KHDKMGMNVLALKELAPDERKAFTLELRKTLDGGEEGQPGKYRGKLEVELLYKPFTEEEM 120

Query:   397 PKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKK 456
                    Q VQKAPE TP  GG+LVVIVH A+DVEGKHHTNPY  I F+GEERKTK+VKK
Sbjct:   121 -------QAVQKAPEGTPVAGGMLVVIVHSAEDVEGKHHTNPYVHIYFKGEERKTKNVKK 173

Query:   457 NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRIN 516
             N+DP+W EEF FMLEEPP +++LHVEV S SSRIGLLHPKETLGY+DI + DVV+NKR+N
Sbjct:   174 NKDPKWNEEFSFMLEEPPVHEKLHVEVFSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMN 233

Query:   517 EKYHLIDSKNGRIQIELQWRTA 538
             +K+HLIDSKNG+IQIEL W+TA
Sbjct:   234 QKFHLIDSKNGKIQIELDWQTA 255

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 134/405 (33%), Positives = 216/405 (53%)

Query:     7 IFGFCGFGVGISSGLVIGYFLFIYFQPT---DVKNPEIRPLVERDSETLQQMLPE--IPL 61
             +FG    G+ +S GLV+ +  +   + T   D+    I        +  +++LP    P 
Sbjct:     4 LFGLF-IGIAVSFGLVVAFARYSSVRSTRRADLAKT-IAAFARMTVQDSRKLLPGDFYPS 61

Query:    62 WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
             WV      +++WLN  LE +WPY+++A  +  K+  +P++ +  P   + S++F   TLG
Sbjct:    62 WVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFSKFTLG 120

Query:   122 TLPPTFQGMKVYVTDE--KELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQP 178
             T+ P F G+ +  ++     + ME  ++W  NP + + VK   G+   ++V ++      
Sbjct:   121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query:   179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMY 238
             R+  KPLV  FPCF  +  SL EK  +DF LK++G +L SIPG+   ++E I+  + +  
Sbjct:   181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query:   239 LWPKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS 296
              WP    +PIL  D S    +PVG L VKVV+A +L  KD++G SDPY  + I      +
Sbjct:   241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query:   297 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
             KKT     +LNP WNE + F V D  +Q + + V+D E VG    +G   VPL EL P +
Sbjct:   301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360

Query:   357 PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF-KEEDLPKSF 400
                  L L+K++++   ++ K+RGQ+ +E +Y P  KE  L   F
Sbjct:   361 VKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPF 403

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 132/393 (33%), Positives = 216/393 (54%)

Query:    12 GFGVGISSGLVIGYFLFIYFQPTDVKNPEIRP--------LVERDSETLQQMLPE--IPL 61
             GF VG+  GL++G  + I F   +    ++R               E  +++LP    P 
Sbjct:     2 GFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPS 61

Query:    62 WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
             WV   +  ++ WLN  L  +WPY+D+A  +  K   +P++ +  P   + S+ F  LTLG
Sbjct:    62 WVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLTLG 120

Query:   122 TLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQPRI 180
             T+ P F G+ V   D+  + +E  ++W  NPN+ +GVK   G+   +QV ++      R+
Sbjct:   121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query:   181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
               +PLV  FPCF  + VSL EK  +DF LK+VG D+ +IPGL   ++E I+  V +   W
Sbjct:   181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query:   241 PKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK 298
             P    +PI+  D S    +PVG+L VK+V+A NL  KDL+G SDP+ K+ I   +  +K+
Sbjct:   241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query:   299 TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
             +   + +LNP WNE + F V D  +Q + + +YD E V   + +G   + L EL P +  
Sbjct:   301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query:   359 VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391
                L L+K++++   ++ K+RG++ +E +Y P+
Sbjct:   361 DVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPY 391

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 132/425 (31%), Positives = 223/425 (52%)

Query:     1 MGVISTI-FGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPE- 58
             MG+IS I FG   FGV + +G      +         K  +++ L     + L+++  + 
Sbjct:     1 MGLISGILFGII-FGVALMAGW--SRMMTHRSSKRVAKAVDMKLLGSLSRDDLKKICGDN 57

Query:    59 IPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETL 118
              P W+  P +++V WLNK L  MWPY+ +A     ++  +P++ +  P   I S++F  L
Sbjct:    58 FPQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPP-GITSLKFSKL 116

Query:   119 TLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQP 178
             TLG + P  +G++V    E ++ M+  L+W  +PN+ +GV A      +Q+ DLQVF   
Sbjct:   117 TLGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVA 176

Query:   179 RITLKPLVPAFPCFANIYVSLME--KPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVAN 236
             R+  + L    PC + + V+L+   KP +D+ LK VG  L +IPGL   + + + T V +
Sbjct:   177 RVIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKD 235

Query:   237 MYLWPKTLEVPI----LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED 292
             M  WP  + VPI    +D S    +P G L V VVKA NLK K+L+G SDPY  + I   
Sbjct:   236 MLQWPHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYIRP- 294

Query:   293 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
              +   KT     NLNP W++ +     D E+Q++ + V+D + VG+ +++G+  +PL  L
Sbjct:   295 -VFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFD-KDVGQDERLGLVKLPLSSL 352

Query:   353 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412
                      L+LL ++D    +++K RG + ++  Y  F +E+   + E+ + + +  + 
Sbjct:   353 EAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQMAALEDEKKIMEERKR 412

Query:   413 TPAGG 417
                 G
Sbjct:   413 LKEAG 417

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)]

 Score = 420 (152.9 bits), Expect = 1.9e-38, P = 1.9e-38
 Identities = 126/503 (25%), Positives = 236/503 (46%)

Query:     1 MGVISTIF--GFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPL--VERDSETLQQML 56
             + ++ +I+  G+ G+ V      VI          T  K  +I     +  + + +   +
Sbjct:    84 VAIVGSIYLVGYMGWSVAWLIAPVILSVARDQLAKTSEKKRDIAKASALASEKDVILARI 143

Query:    57 PEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFE 116
              E+P WV  PD +R +WLNK L+ +WP  +       K   +P +A  +  YK+    F+
Sbjct:   144 DELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMHGFRFD 203

Query:   117 TLTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQV 174
              + LGT+PP   G+K+Y    D  E+IM+  L +A++ ++   +   G+K  ++  D Q+
Sbjct:   204 RIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDINFYLG--GMKGGIK--DFQI 259

Query:   175 FAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGA-DLMSIPGLYRFVQELIKTQ 233
                 R+ +KPL+ + P    + +  +  P++DF L  VG  D M +PGL   ++ +I  Q
Sbjct:   260 HGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL--VGVIDFMDMPGLSDLLRRIIVEQ 317

Query:   234 VANMYLWPKTLEVPILDPSKAYR----RPVGILHVKVVKAMNLKKKDLL----GASDPYV 285
             + N+ + P  L + + +   A       P GIL + VV+A +L KKD+     G SDPY 
Sbjct:   318 IGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPYA 377

Query:   286 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 345
              + +   +    KT +   N+NP+W+     TV     Q VE+ + D +   K + +G  
Sbjct:   378 IINVGAQEF---KTQIIDNNVNPKWDYWCEATVFIEMGQFVEIQLKDSDDSKKDENLGRA 434

Query:   346 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI-YKPFKE-EDLPKSFEES 403
              + +  +  +      +D    + L D ++    G L V    YK   +  DL +   E+
Sbjct:   435 SIDIASVIKKG----VVDSW--LTLEDAKH----GLLHVRLQWYKLTADPNDLQQILLET 484

Query:   404 QTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTN---PYARILFRGEERKTKHVKKNRDP 460
             Q ++     T     +L V +  A+ ++    ++   PY       ++++T  + ++  P
Sbjct:   485 QLLRV----TSMSSAVLSVFIDSARHLKQARSSSKPDPYLVCSVNKQKQQTAMIMRDDSP 540

Query:   461 RWEEEFQFMLEEPPTNDRLHVEV 483
              WE+ F F++  P  N+ L++++
Sbjct:   541 VWEQGFTFLVSNPD-NESLNIKI 562

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 398 (145.2 bits), Expect = 2.6e-36, P = 2.6e-36
 Identities = 122/498 (24%), Positives = 241/498 (48%)

Query:    41 IRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKN-IAKP 99
             +R    R+ E +   L ++P WV+ PD +RV+WLNK +  +WPY+ +   KT  N    P
Sbjct:    57 LRATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGE-YTKTFMNDFIIP 115

Query:   100 IIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTD--EKELIMEPCLKWAANPNVTIG 157
              +  Q+P    ++ +F  + +G +P    G+KVY T+     +I++  + +A + + T+ 
Sbjct:   116 QVKAQMPGM-FKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVS 174

Query:   158 VKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLM 217
                F    T  + ++Q   + R  LKPL+P  P    +  + +E P +DF L  +G +++
Sbjct:   175 CCGF----TGGMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMV 229

Query:   218 SIPGLYRFVQELIKTQVANMYLWPKTLEVPI---LDPSKAY-RRPVGILHVKVVKAMNLK 273
              +PGL   ++ +I +Q+A + + P  + VP+   +D ++ Y   P G++ +K+++A NL+
Sbjct:   230 ELPGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLE 289

Query:   274 KKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELA 329
              +D+     G SDPY ++++        KT     +LNP WNE +   V   + Q + + 
Sbjct:   290 NRDISFIKKGKSDPYAEIQVGSQFF---KTRTIDDDLNPIWNEYFEAVVDQADGQKLRIE 346

Query:   330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389
             ++D +Q GK +++G   V LK +  +     T+D  K   L   ++    G L ++  + 
Sbjct:   347 LFDEDQ-GKDEELGRLSVDLKLVQAKG----TID--KWYPLEGCKH----GDLHIKATWM 395

Query:   390 PFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRG 446
                 E L    ++    +    + P    LL+V +    D+   + K   +P+  +    
Sbjct:   396 NLSTE-LRHLEKQEWEAEWGQADKPIHSALLMVYIDSVADLPYPKSKLEPSPFVEVSLGK 454

Query:   447 EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL 506
             E ++T    K  +P ++ +F F +      + L  E     +R        +LG ++I L
Sbjct:   455 ETQRTPVKVKTVNPLFQSKFLFFVRHLEGQE-LKFEAVDDGTR-------RSLGSLNIPL 506

Query:   507 SDVVSNKRI--NEKYHLI 522
             + ++    +  N++ H++
Sbjct:   507 TTLLKEPNLEQNQQMHML 524

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

MGI|MGI:1261845 Esyt2 "extended synaptotagmin-like protein 2" [Mus musculus (taxid:10090)]

 Score = 390 (142.3 bits), Expect = 3.0e-34, P = 3.0e-34
 Identities = 125/499 (25%), Positives = 241/499 (48%)

Query:    58 EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
             ++P WV  PD +R +WLNK ++ MWP++ + I K  +   +P +        + +  F  
Sbjct:   106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGA--NAHLSTFSFTK 163

Query:   118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
             + +G  P    G+KVY    D++++I++  + +  N  + + +K +  +A V+   +Q+ 
Sbjct:   164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 221

Query:   176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-ADLMSIPGLYRFVQELIKTQV 234
                R+ L+PL+   P    + +  + KP ++  +   G  +L+ IPGL      +I   +
Sbjct:   222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLE--INWTGLTNLLDIPGLNGLSDTIILDII 279

Query:   235 ANMYLWPKTLEVPILDPSK-AYRR---PVGILHVKVVKAMNLKKKD------LLGASDPY 284
             +N  + P  + VP++   + A  R   P G+L +  ++A +L+ KD      + G SDPY
Sbjct:   280 SNYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPY 339

Query:   285 VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGM 344
               +++      SK   +K +NL+P+WNE Y   V +   Q +E+ ++D E   K D +G 
Sbjct:   340 GIIRVGNQIFQSK--VIK-ENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGS 395

Query:   345 NVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQ 404
              ++ L E+  E    + LD    +D    +  K +  L +E++       +L K   + +
Sbjct:   396 LMIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLKLEWLTLMPDAANLDKVLADIR 447

Query:   405 TVQKAPENTPAGGGLLVVIVHEAQDV-EGKH---HTNPYARILFRGEERKTKHVKKNRDP 460
                K   +      LL++ +  A+++  GK    + NP  ++    + +++K   K  +P
Sbjct:   448 A-DKDQASDGLSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIRYKTSEP 506

Query:   461 RWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEK 518
              WEE F F +  P   D L VEV     +        +LG + I LS +++  N  IN++
Sbjct:   507 VWEENFTFFIHNPRRQD-LEVEVKDEQHQC-------SLGSLRIPLSQLLTSDNMTINQR 558

Query:   519 YHLIDS-KNGRIQIELQWR 536
             + L +S  N  +++++  R
Sbjct:   559 FQLSNSGPNSTLKMKIALR 577

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 391 (142.7 bits), Expect = 3.3e-34, P = 3.3e-34
 Identities = 140/550 (25%), Positives = 256/550 (46%)

Query:    15 VGISSGLVI-GYFLFIYFQPT-DVKNPEIRP---LVERDSE----TLQQMLPEIPLWVKC 65
             VG+S G V+ G  L++ ++   D K   +R    L++ + +    TL     E+P WV  
Sbjct:    74 VGLSVGFVLFGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTLYMSHRELPAWVSF 133

Query:    66 PDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPP 125
             PD ++ +WLNK +  +WP+L + + K       P +    P   +++  F  + LG  P 
Sbjct:   134 PDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH--LQTFTFTRVELGEKPL 191

Query:   126 TFQGMKVYVTDEKE-LIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKP 184
                G+KV+    KE ++++  + +  +  + + VK +  KA V+   +Q+    R+ L+P
Sbjct:   192 RIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVK--GMQLHGVLRVILEP 249

Query:   185 LVPAFPCFANIYVSLMEKPHVDFGLKLVG-ADLMSIPGLYRFVQELIKTQVANMYLWPKT 243
             L+   P    + +  + +P +D  +   G  +L+ IPGL      +I   +A   + P  
Sbjct:   250 LIGDLPFVGAVSMFFIRRPTLD--INWTGMTNLLDIPGLSSLSDTMIMDSIAAFLVLPNR 307

Query:   244 LEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITED 292
             L VP+   L      R P+  GI+ + ++ A  L  KD      + G SDPY  +++   
Sbjct:   308 LLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRLGTQ 367

Query:   293 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
                S+   V  + LNP+W E Y   V +   Q +E+ V+D +   K D +G   + + ++
Sbjct:   368 TFCSR---VIDEELNPQWGETYEVMVHEVPGQEIEVEVFD-KDPDKDDFLGRMKLDVGKV 423

Query:   353 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412
                + SV  LD      L  GQ +     L +E++      E L +  + +  V   P+ 
Sbjct:   424 L--QASV--LD--DWFPLQGGQGQV---HLRLEWLSLLSDAEKLEQVLQWNWGVSSRPD- 473

Query:   413 TPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFM 469
              P    +LVV +  AQD+   +G    NP  ++  +   +++K V     P WEE F+F 
Sbjct:   474 -PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESKAVYSTNCPVWEEAFRFF 532

Query:   470 LEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRI--NEKYHLIDS-KN 526
             L++P + + L V+V   S  +       TLG + + L+ +++   +  ++ + L  S  N
Sbjct:   533 LQDPQSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTAPELILDQWFQLSSSGPN 584

Query:   527 GRIQIELQWR 536
              R+ ++L  R
Sbjct:   585 SRLYMKLVMR 594

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6ETT4	SYT2_ARATH	No assigned EC number	0.7249	0.9962	0.9981	no	no
Q9SKR2	SYT1_ARATH	No assigned EC number	0.7722	1.0	0.9944	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NTMC2T1.2 plant synaptotagmin (538 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	538
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-44
pfam00168	85	pfam00168, C2, C2 domain	4e-26
smart00239	101	smart00239, C2, Protein kinase C conserved region	9e-26
cd00030	102	cd00030, C2, C2 domain	1e-25
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-20
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-18
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-18
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	5e-18
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	8e-16
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-15
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-15
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-15
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	4e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-15
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	6e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-14
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-14
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	3e-14
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	3e-14
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	4e-14
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-14
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	8e-14
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-13
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-13
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-13
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	5e-13
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	5e-13
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	4e-12
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	9e-12
pfam00168	85	pfam00168, C2, C2 domain	1e-11
cd00030	102	cd00030, C2, C2 domain	1e-11
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	2e-11
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	2e-11
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	3e-11
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	8e-11
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	1e-10
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	1e-10
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-10
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-10
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-10
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	4e-10
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	4e-10
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	6e-10
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	8e-10
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-09
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	4e-09
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	1e-08
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-08
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-08
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	4e-08
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	4e-08
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	6e-08
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	1e-07
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-07
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	1e-07
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	2e-07
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-07
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-07
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-07
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	4e-07
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	4e-07
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	5e-07
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-07
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	1e-06
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-06
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-06
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	2e-06
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	2e-06
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	2e-06
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	4e-06
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	4e-06
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	5e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	7e-06
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	2e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-05
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	3e-05
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	3e-05
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-05
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	5e-05
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	8e-05
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	1e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-04
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	2e-04
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-04
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	5e-04
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	7e-04
PLN02952	599	PLN02952, PLN02952, phosphoinositide phospholipase	7e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	8e-04
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	9e-04
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	0.001
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.002
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.002
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	0.002
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	0.002
cd08400	126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	0.002
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	0.002
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	0.003
PLN02223	537	PLN02223, PLN02223, phosphoinositide phospholipase	0.003
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.004

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  168 bits (428), Expect = 2e-44
 Identities = 119/503 (23%), Positives = 208/503 (41%), Gaps = 63/503 (12%)

Query: 2   GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVK-NPEIRPLVERDSETLQQMLPEIP 60
            V S IFG+ GF     S   I       ++    +    IR LV++  E  ++ L    
Sbjct: 165 SVASWIFGYLGFSFA--SLFFIILVTMYVYRTCIKRVRRNIRDLVQQ--ELSEEKLEN-- 218

Query: 61  LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
                 DY+ V+WLN FL+  WP ++ +I +   +     +AE IP + I+++  +  TL
Sbjct: 219 ------DYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTL 271

Query: 121 GTLPPTFQGMKVYV-TDEKELIMEPCLKWAANPN-------------------VTIGVKA 160
           G+ PP   G++ Y  T+   ++M+    +  +                     V  G   
Sbjct: 272 GSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSF 331

Query: 161 FGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----AD 215
                 + V DL    + R+ ++ L+  +P    +   L+E P  DF L  +G      D
Sbjct: 332 GSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVD 390

Query: 216 LMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYR-RPVGILHVKVVKAMNLKK 274
           + +IPGL RF+QE+I + +  M L P +L + I           +G++ VK+  A  LKK
Sbjct: 391 IFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKK 450

Query: 275 KDLL--GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332
            D    G  DPY+ +    D++   KT VK   LNP WN E  + + +  +  + L++YD
Sbjct: 451 SDSTINGTVDPYITVT-FSDRVIG-KTRVKKNTLNPVWN-ETFYILLNSFTDPLNLSLYD 507

Query: 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392
           +        +G   + L  L  + P        KN      +N K+ G+L  +  + P  
Sbjct: 508 FNSFKSDKVVGSTQLDLALLH-QNPVK------KNELYEFLRNTKNVGRLTYDLRFFPVI 560

Query: 393 EEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYAR---ILFRGEER 449
           E+       E +   +  E++    G+L V + E + ++                  E  
Sbjct: 561 EDKK-----ELKGSVEPLEDSNT--GILKVTLREVKALDELSSKKDNKSAELYTNAKEVY 613

Query: 450 KTKHVKKNRDPRWEEEFQFMLEE 472
            T  +K    P W  ++  ++ +
Sbjct: 614 STGKLKFTNHPSWNLQYNVLVTD 636

Length = 1227

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  101 bits (253), Expect = 4e-26
 Identities = 38/83 (45%), Positives = 49/83 (59%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V V+ A NL  KDL G SDPYVK+ +   K  +KKT V    LNP WNE + F V  P
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 322 ESQAVELAVYDWEQVGKHDKMGM 344
           E   + + VYD+++ GK D +G 
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGE 83

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  101 bits (252), Expect = 9e-26
 Identities = 41/100 (41%), Positives = 54/100 (54%)

Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
            L VK++ A NL  KD  G SDPYVK+ +  D    KKT V    LNP WNE + F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 321 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
           PE   +E+ VYD ++ G+ D +G   +PL +L       K
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  100 bits (252), Expect = 1e-25
 Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V V++A NL  KDL G SDPYVK+ +        KT V    LNP WNE + F V DP
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDL 364
           ES  + + V+D ++  K D +G   +PL EL    +     L L
Sbjct: 59  ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V V+ A NL   D  G SDP+VK  +  +K+   KT    K LNP WNE +   V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
               +++ VYDW++ GK D +G   + L +L PEE +  TL L
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 5/101 (4%)

Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKI----TEDKLPSKKTTVKHKNLNPEWNEEYNF 316
           IL VKV+  ++L KKD+ GASDPYVK+ +       ++ S +T    K LNP+WNEE+ F
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 357
            V +P    +   V+D  ++ + D +G   VPL  L  E P
Sbjct: 61  RV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETP 100

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 4/97 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y    G L V +++A NLKK D+ G SDPYVK+ + ++  +L  KKTT+K + LNP +NE
Sbjct: 10  YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNE 69

Query: 313 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVV 347
            ++F V   + Q V L   V D++++GK+D +G  V+
Sbjct: 70  SFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 80.4 bits (199), Expect = 5e-18
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
           +G+L V+VV+  NL  +D    SDPYV L +   K+   KT V  KNLNP WNEE   +V
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56

Query: 319 RDPESQAVELAVYDWEQVGKHDKMG 343
            +P +  ++L V+D +   K D MG
Sbjct: 57  PNPMAP-LKLEVFDKDTFSKDDSMG 80

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 73.5 bits (181), Expect = 8e-16
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEE---YNF 316
           LH  +++A  LK  D  G SDPYVKL +     K    +T   HK  NPE+NE    Y  
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76

Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
           T  D + + + L V D ++ G +D +G   +PLK+L P +
Sbjct: 77  TEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKKLKPNQ 115

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-PSK-KTTVKHKNLNPEWNE 312
           Y      L V +++ +NL   D  G SDP+VKL +  D    SK KT VK K LNPE+NE
Sbjct: 8   YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNE 67

Query: 313 EYNFTVRDPE--SQAVELAVYDWEQVGKHD 340
           E+ + ++  +   + +E+ V+D +  GK +
Sbjct: 68  EFFYDIKHSDLAKKTLEITVWDKDI-GKSN 96

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
           S +Y      L +K++KA+ L  KD  G SDP+VK+ +  DK    +T VK KNLNP WN
Sbjct: 8   SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67

Query: 312 EEYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
           E + F        + + + L V D+++  ++D +G   +PL ++   E      DL
Sbjct: 68  ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNEEYNFTVR 319
           L V +++A +L   D+ G SDPYVK+ +  DK   KK  T V  K LNP +NE + F V 
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 320 DPESQAVEL--AVYDWEQVGKHDKMGMNVVPL 349
             E     L  +VYD+++  KHD +G   VPL
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 71.7 bits (176), Expect = 4e-15
 Identities = 39/124 (31%), Positives = 74/124 (59%), Gaps = 6/124 (4%)

Query: 247 PILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL 306
             L  S  Y + +GIL+VK+++A NL+ +D  G +DPY K+++  D+  +K++ +  K L
Sbjct: 3   GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTL 62

Query: 307 NPEWNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
           NPE++E + F V   +   + +E+ +YD++Q  + + +G+  +PL E+   E     LDL
Sbjct: 63  NPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEK----LDL 118

Query: 365 LKNM 368
            + +
Sbjct: 119 WRKI 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 11/129 (8%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           G L VKV++A  L   D+ G SDP+  L++   +L   +T   +K LNPEWN+ + F ++
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57

Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSR 379
           D     +E+ VYD ++  K + +G   +PL  +   E        LK+  L      +++
Sbjct: 58  DIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYA---LKDKKLRT----RAK 109

Query: 380 GQLVVEFIY 388
           G +++E   
Sbjct: 110 GSILLEMDV 118

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 260 GILHVKVVKAMNLKKKDLL------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
           G+L + V++A +L  KD        G SDPYV +++        K+ V  +NLNP+WNE 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57

Query: 314 YNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 351
           Y   V +   Q +E+ ++D E   K D +G   + L  
Sbjct: 58  YEAVVDEVPGQELEIELFD-EDPDKDDFLGRLSIDLGS 94

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 260 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
           G+L V VV+A +L  KD    G SDPY  L +   +    KT      LNP+WN    F 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57

Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
           +   ++Q ++L ++D ++    D +G   + L+E+
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEV 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 69.9 bits (172), Expect = 2e-14
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           L V V+KA NL   D  G SDPYVK+ + +   KL  KKT+VK   LNP +NE ++F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 320 DPESQAV--ELAVYDWEQVGKHDKMG 343
             + + V   + V D + VG+++ +G
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPE 309
           S  Y      + V ++KA NLK  D+ G SDPYVK  L   + ++  KKT +K + LNP 
Sbjct: 7   SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66

Query: 310 WNEEYNFTV-----RDPESQAVELAVYDWEQVGKHDKMG 343
           +NE + F +     R+     + + V D +++ ++D +G
Sbjct: 67  FNESFIFNIPLERLRE---TTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 69.1 bits (169), Expect = 3e-14
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L   V++A +L  KD  G SDP+V++        + +T+V  K+  P WNE + F + + 
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFELMEG 58

Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
               + + V+DW+ V K+D +G  V  ++ L
Sbjct: 59  ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTL 89

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 68.8 bits (169), Expect = 4e-14
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKLPSK-KTTVKHKNLNPEWNEEYNFTVR 319
           L V+V +A NL   D  G SDPYVKLK I + K  +K KT    K LNP WNE + F ++
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 320 DP-ESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 353
              + + + + V+DW++  ++D MG     + EL 
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELI 109

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 13/170 (7%)

Query: 258  PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
              G L + +    NL   D  G SDP+VKL + E  +   KT V  K LNP WNEE+   
Sbjct: 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVWNEEFTIE 1095

Query: 318  VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 377
            V +     + + V DW+   K+D +G   + L +L P   +        N+ L+      
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTT------NSNIPLDGKTFIV 1149

Query: 378  SRGQLVVEFIYKPFKEEDLPKSFE--ESQTVQKAPENTPAGGGLLVVIVH 425
              G L   F ++  K        E       +K    T    G   V   
Sbjct: 1150 LDGTLHPGFNFRS-KYALNVSRKEGILGDIAKKV--GTGLKAGSTTVGSV 1196

Length = 1227

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 68.3 bits (167), Expect = 8e-14
 Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
           S  Y    G L + ++KA NLK  D+ G SDPYVK+ +  +  +L  KKT+VK   LNP 
Sbjct: 6   SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT 65

Query: 310 WNEEYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGM 344
           +NE   F V       V L  AV D+++VG ++ +G+
Sbjct: 66  YNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGV 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L + + +  NL  +D  G SDPYVK K    K   K  T+ +KNLNP W+E++   + D 
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKY-GGKTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59

Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
            +Q + + V+D+++    D MG   V L  L   +P+   L L
Sbjct: 60  -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 420 LVVIVHEAQDVEGKHHTN---PYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLE 471
           L+V VH+ +++     ++   PY R+       +   RKT   K N +P ++E F+F + 
Sbjct: 18  LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77

Query: 472 EPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521
                 R L V V +  S +     K+ LG + I+LSD+  +K   + Y L
Sbjct: 78  LEELKRRTLDVAVKNSKSFLS--REKKLLGQVLIDLSDLDLSKGFTQWYDL 126

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPES 323
           V VV+A NL+ KD  G SDPY+K+K+ + K+  +   +    LNP + + +      P +
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGN 62

Query: 324 QAVELAVYDWEQVGKHDKMGMNVVPL 349
             ++++V D++ +G  D +G  V+ L
Sbjct: 63  SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 21/130 (16%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----KKTTVKHKNLNPEWNEEYNF 316
           L V+V++A N+ K DLL   D YV+L      LP+     K+T     ++NP WNE + F
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVEL-----WLPTASDEKKRTKTIKNSINPVWNETFEF 56

Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
            ++      +EL V D E     D +G  +  + +L   E    T  L          N 
Sbjct: 57  RIQSQVKNVLELTVMD-EDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL----------NP 105

Query: 377 KSRGQLVVEF 386
           + + +L VEF
Sbjct: 106 QGKEELEVEF 115

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
           ++ + +V+  NL   D  G SDPYVK ++  +K  SK   V  K LNP+W E+++  + D
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSK---VCSKTLNPQWLEQFDLHLFD 57

Query: 321 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRG 380
            +SQ +E+ V+D +   K + +G   + L  L  E+     L+L           E   G
Sbjct: 58  DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-----------EDGEG 106

Query: 381 QLV 383
            L+
Sbjct: 107 SLL 109

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V+VV A +L  KD  G+S  YV+L     K   K+T  K K+LNP WNE+  F V DP
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 322 E---SQAVELAVYD 332
               +  +E+ VY+
Sbjct: 59  SRLSNLVLEVYVYN 72

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 61.9 bits (151), Expect = 9e-12
 Identities = 32/80 (40%), Positives = 41/80 (51%)

Query: 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPES 323
           +++V+A NLK     G SDPYV L  T  K    KT   +  LNP W+EE+   V   E 
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 324 QAVELAVYDWEQVGKHDKMG 343
             +   V+D   VGKHD  G
Sbjct: 65  LWISATVWDRSFVGKHDLCG 84

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 420 LVVIVHEAQD---VEGKHHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEEP 473
           L V V  A++    +    ++PY ++   G++   +KTK VK   +P W E F F +  P
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 474 PTNDRLHVEV 483
                L +EV
Sbjct: 61  EL-AELRIEV 69

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 420 LVVIVHEAQDVEGKH---HTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPT 475
           L V V EA+++  K     ++PY ++   G++  KTK VK   +P W E F+F + +P  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE- 59

Query: 476 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522
           +D L VEV             + LG ++I LS+++ + +  E +  +
Sbjct: 60  SDTLTVEVWDKDR----FSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPE 309
           S  Y+     L V V+KA +L K D+ G +DPYVK+ +   + ++  KKT VK   LNP 
Sbjct: 7   SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66

Query: 310 WNEEYNFTVRDPESQ--AVELAVYDWEQVGKHDKMG 343
           +NE + F +   E +  +VE  V D ++V K++ +G
Sbjct: 67  FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)

Query: 267 VKAMNLKKKDLLGASDPYVKL-KITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---- 319
                L KKD  G SDP++++ + +ED   +   +T V    LNP W     FT+     
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63

Query: 320 ---DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
              D +   +++ VYD++  GKHD +G     L EL    P    L
Sbjct: 64  CNGDYDRP-IKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 34/136 (25%)

Query: 248 ILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI-------TEDKLPSKK-- 298
           +L+  +    P+ +L V V++A  L  KD+ G SDPY  L I         +K   +K  
Sbjct: 16  LLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSH 75

Query: 299 -----------------TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341
                            T VK + LNP WNE + F V D  +  + L ++D      HD 
Sbjct: 76  RKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWD------HDD 129

Query: 342 --MGMNVVPLKELTPE 355
             +G   +PLK+L   
Sbjct: 130 DFLGCVNIPLKDLPSC 145

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 59.2 bits (144), Expect = 8e-11
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
           P  +  V V  A  L K+D  G +DPYV +K   + +   ++ V+   L+PE++ +  F 
Sbjct: 1   PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57

Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 377
            + P S           QV   + +    +    L+ +    +TL  L           +
Sbjct: 58  RKKPRSPIK-------IQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRKRGRDAAGE 110

Query: 378 SRGQLVVE 385
             G + V+
Sbjct: 111 VPGTISVK 118

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
           +L V +  A NL          PYV+L + +    ++K+ VK +  NP W E + F VR+
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRN 57

Query: 321 PESQAVELAVYDWEQVGKHDK-MGMNVVPLKELTPEE 356
           PE+Q +E+ V D     K  K +G   +PL EL  E 
Sbjct: 58  PENQELEIEVKD----DKTGKSLGSLTLPLSELLKEP 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 262 LHVKVVKAMNLKKKDLLGA-SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
           L V ++KA NL  +    A  DP+VK+ +  D+  S ++ VK K  NP ++E + F V  
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75

Query: 321 PESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTP 354
            E Q   + L+VYD ++  +H  +G  + PLK+L  
Sbjct: 76  KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEE 472
            L V +  A+++  K     ++PY ++   G+    +KTK VK   +P W E F+F +  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV-P 59

Query: 473 PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRI 515
           PP    L +EV             + +G + I LSD++   R 
Sbjct: 60  PPELAELEIEVYDKDR----FGRDDFIGQVTIPLSDLLLGGRH 98

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 438 PYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPK 496
             A++ FRG ++KT+ ++   +P W E F++ L   P  ++ L + V     ++G     
Sbjct: 17  RIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDY-EKVG---RN 72

Query: 497 ETLGYIDINLSDVVSNKRINEKYHLIDSKN 526
             +G   ++L D+VS   +     L+DS  
Sbjct: 73  RLIGSATVSLQDLVSEGLLEVTEPLLDSNG 102

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 17/107 (15%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR- 319
           L V+V++  +L  K   G  DP+ ++      K  +K+T VK K  NP ++E + F +  
Sbjct: 1   LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 320 --------------DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
                         D E   + + ++    V   D +G   +PL+ L
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           + + V+ A  L K+DL    DP+  + +  D   +  T V  K L+P+WNE ++ TV   
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITV--DGGQTHSTDVAKKTLDPKWNEHFDLTVGP- 58

Query: 322 ESQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSR 379
            S  + + V+D ++  K D+  +G   +    + P + +      L+   L    N   R
Sbjct: 59  -SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLR--KLKKSDNLSVR 115

Query: 380 GQLVVEF 386
           G++VV  
Sbjct: 116 GKIVVSL 122

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 261 ILHVKVVKAMNLKKKDLLGAS--DPYVKLKIT---EDKLPSKKTTVKHKN-LNPEWNEEY 314
            L +K++    L K      S  DPYV+++I     D     KT V   N  NP WNE +
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 315 NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
            F V  PE   +   VYD +  G  D +G   +PL  L
Sbjct: 63  EFDVTVPELAFLRFVVYDED-SGDDDFLGQACLPLDSL 99

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 266 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR---DPE 322
           VV   NL    L G  D   K+     K   KKT V    LNP WNE + + +    DP+
Sbjct: 2   VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPD 56

Query: 323 SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQL 382
              +E+ V D+E+VG++  +G   V L++L      V    L     L D     +   +
Sbjct: 57  ES-LEIVVKDYEKVGRNRLIGSATVSLQDL------VSEGLLEVTEPLLDSNGRPTGATI 109

Query: 383 VVEFIYKP 390
            +E  Y+P
Sbjct: 110 SLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 56.4 bits (137), Expect = 8e-10
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 259 VGILHVKVVKAMNLKKKDLLGAS-DPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
           +G+L V +  A  LK  D++G + DPYV   I+  +    +T VK    NP WNE     
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRE-LARTKVKKDTSNPVWNETKYIL 59

Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK--TLDLLKNMDLNDGQN 375
           V    ++ + L VYD+    K   +G     L  L  + P  +  T +LL+        N
Sbjct: 60  VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL-QNPEQENLTKNLLR--------N 109

Query: 376 EKSRGQL 382
            K  G+L
Sbjct: 110 GKPVGEL 116

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 25/132 (18%)

Query: 418 GLLVVIVHEAQDVEGKHH---------TNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 468
           G+L + V EAQD+  K           ++PY  +    +  K+K +K+N +P+W E ++ 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 469 MLEEPPTNDRLHVEVCSVSSRIGLLHPKET-----LGYIDINLSDVVSNKRINEKYHLID 523
           +++E P  + L +E          L  ++      LG + I+L  V     I+E   L D
Sbjct: 61  VVDEVPGQE-LEIE----------LFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLED 109

Query: 524 SKNGRIQIELQW 535
            K+GR+ ++L+W
Sbjct: 110 VKSGRLHLKLEW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--PSKKTTVKHKNLNPEWNE--EYNFT 317
           L V V K  NL   D     DPYV+L +  DK     +KT+VK  NLNP ++E  E+  +
Sbjct: 18  LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77

Query: 318 VRDPESQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDL 364
           + + + + +++AV + +     +K  +G  ++ L +L   +   +  DL
Sbjct: 78  LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE--EYN 315
           G LHV V +A NL      G SD +VK  +  DK     +KT V  K++NP WN    Y+
Sbjct: 27  GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD 86

Query: 316 -FTVRDPESQAVELAVYDWEQVGKHDKMG 343
             +  D     +EL V+D +++  +D +G
Sbjct: 87  GVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           + + VV A  L  KD  G SDPYV +++ + K   K+T    +NLNP WNE+++F   + 
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHN- 58

Query: 322 ESQAVELAVYD 332
            S  +++ V+D
Sbjct: 59  SSDRIKVRVWD 69

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED----KLPSKKTTVKHKNLNPEW 310
           YR     L V+++ A NL   D  G+SDP+VK+++        +P+ KT VK K L P +
Sbjct: 11  YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLF 70

Query: 311 NEEYNFTVRDPESQA----VELAVYDWEQVGKHDKMGMNVVPLKEL 352
           +E + F V   +       +   V D++ +G +D  G   +PL ++
Sbjct: 71  DESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 13/105 (12%)

Query: 254 AYRRPVGILHVKVVKAMNL-----KKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNL 306
           +Y    G L V + +  NL     KKK     S+PYVK+ +  DK     +KT+VK    
Sbjct: 8   SYNYKTGSLEVHIKECRNLAYADEKKK----RSNPYVKVYLLPDKSKQSKRKTSVKKNTT 63

Query: 307 NPEWNEE--YNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL 349
           NP +NE   Y+ +    E++ ++L+V+  ++ G++  +G   +PL
Sbjct: 64  NPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPL 108

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L + V  A  LK        DPYV+  +T D  P KKT V  K  NP+WNE   FTV   
Sbjct: 4   LQITVESA-KLKSNSKSFKPDPYVE--VTVDGQPPKKTEVSKKTSNPKWNEH--FTVLVT 58

Query: 322 ESQAVELAVYD 332
               +E  V+ 
Sbjct: 59  PQSTLEFKVWS 69

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
           +G L V +V+  +LK  +  G SDPY ++ +        KT V    LNP+WN    F V
Sbjct: 14  IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ---EHKTKVVSDTLNPKWNSSMQFFV 70

Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE-----PSVKTLDL 364
           +D E   + + V+D +     D +G   + + ++  E      P  K L L
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL 121

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 419 LLVVIVHEAQD---VEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT 475
           LL V +  A++    +     +PY  +      +K+K  ++  +P WEE F F L   P 
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF-LVRNPE 59

Query: 476 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKYHLIDS 524
           N  L +EV    +        ++LG + + LS+++   +  +++ + L +S
Sbjct: 60  NQELEIEVKDDKT-------GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 260 GILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
           G+L V + +A +L K D   G+SDPYV     +   P   T +  K+LNP W E +   V
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 319 RDPESQAVE---LAVYDWEQVGKHDKMGMNVVPLKEL 352
              E +A E     ++D ++    D++G   + LKEL
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L++++V+  NL  KD+ G+SDPY  +K+  D     +T    K LNP W EEY  TV  P
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEY--TVHLP 57

Query: 322 ES-QAVELAVYDWEQVGKHDKMG 343
                V   V D + + + D +G
Sbjct: 58  PGFHTVSFYVLDEDTLSRDDVIG 80

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 8/102 (7%)

Query: 437 NPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495
           +PYA +   G+    T+  KK  +P W    +F++ +     R+ V V     R      
Sbjct: 14  SPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVV--KDDR---DRH 67

Query: 496 KETLGYIDINLSDVVSNKRINEKYH-LIDSKNGRIQIELQWR 536
              LG + I+L+D++    + +++  L  +  GRI+I   W+
Sbjct: 68  DPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWK 109

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTV-KHKNLNPEWNEEYNFTV 318
           G L V ++ A  L+  D LG  DPYV   I + +   +K+ V K    NPEWNE++ FTV
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYV---IIQCRTQERKSKVAKGDGRNPEWNEKFKFTV 57

Query: 319 RDPESQAV---ELAVYDWEQVGKHDKMGMNVVPLKEL 352
             P         L + D +     D +G   + LK L
Sbjct: 58  EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKL-PSKKTTVKHKNLNPEWNE 312
           Y    G L+V +++A  L + D+   SDP+VK++ +   KL  +KKT+     ++P +NE
Sbjct: 9   YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNE 68

Query: 313 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVV 347
            ++F V   E + V L   VY       +D +G  V+
Sbjct: 69  SFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 312
           Y +    L V V++A +L  +D     +PYVK+ +  D+    K  T    K LNPEWN+
Sbjct: 11  YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQ 70

Query: 313 --EY-NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL 349
             EY N      + + +E+ V+D+++ G++D +G  V+ L
Sbjct: 71  TFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)

Query: 418  GLLVVIVHEA----QDVEGKHHTNPYARI-LFRGEERKTKHVKKNRDPRWEEEFQFMLEE 472
            G L V +       Q +     TN + ++ L  G  R+TK V  +  P W+E F +  + 
Sbjct: 1980 GSLTVTIKRGNNLKQSMGN---TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDS 2036

Query: 473  PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID--SKNG--- 527
            PP   +LH+  C   +  G    K +LG + I +  VV     + +Y L    +K+G   
Sbjct: 2037 PPKGQKLHI-SCKSKNTFG----KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSR 2091

Query: 528  RIQIELQW 535
             ++IE QW
Sbjct: 2092 TLEIEFQW 2099

Length = 2102

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           G+L + + KA +LK  + +G  DPYV  ++  + +   +T      LNP W+E     V 
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYV--RVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT 58

Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL------------TPEEPSVKTLDLLKN 367
            P +Q + L V D+E+VGK   +G   + + +L              EE  +K L  LK 
Sbjct: 59  SP-NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLLSLKG 117

Query: 368 M 368
           +
Sbjct: 118 V 118

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 10/128 (7%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK-KTTVKHKNLNPEWNEEYNFTVRD 320
           L VK +KA  L +    G+S+PY  L++  D+ P K +++ +    NP W+E + F +  
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEM--DEPPQKYQSSTQKNTSNPFWDEHFLFEL-S 55

Query: 321 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRG 380
           P S+ +   VYD  +      +G+ +VP  EL       +   L         + +   G
Sbjct: 56  PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQG----RPYEGDSVSG 111

Query: 381 QLVVEFIY 388
            + VEF++
Sbjct: 112 SITVEFLF 119

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 421 VVIVHEAQD--VEGKHHTN-PYARILFRGEERKTKHVKKNRDPRWEEEFQF----MLEEP 473
            V V +A+    +GK  TN  Y  I    E+  T   +K   P W+EE  F    +L   
Sbjct: 2   QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61

Query: 474 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV--VSNKRINEKYHLIDSKNGR 528
                L + V   +    LL   + LG + I L+D+     +R    + L +SK G+
Sbjct: 62  GNRATLQLTVMHRN----LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL-ESKPGK 113

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 298 KTTVKHKNLNPEWNEEYNFTVRDPESQ-AVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
           +T+ +   LNP +NE   F V   E    ++  V D ++   +D +    + ++EL    
Sbjct: 40  RTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99

Query: 357 PSVK 360
           P   
Sbjct: 100 PQPD 103

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTV 318
           G L V V+KA NL  K  L   DPY  L+I      +KKT    +   +PEW+EE  F +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEI 57

Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 378
            + +   +++AV+D +   K D +G   V L     E       +L            + 
Sbjct: 58  TEDKKPILKVAVFD-DDKRKPDLIGDTEVDLSPALKEGEFDDWYEL--------TLKGRY 108

Query: 379 RGQLVVEFIY 388
            G++ +E  +
Sbjct: 109 AGEVYLELTF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 14/131 (10%)

Query: 263 HVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT----- 317
            V V++A  L  K   G +D YV +++ ++K     T+VK K  +P W EE +F      
Sbjct: 2   QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58

Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQN 375
             +     ++L V     +G    +G   +PL +L         +   L    +   G++
Sbjct: 59  SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL----ESKPGKD 114

Query: 376 EKSRGQLVVEF 386
           +K RG++ V+ 
Sbjct: 115 DKERGEIEVDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 420 LVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTN 476
           LVV V +AQD+   +G+  ++ Y  + F G++++T+   K+ +P W E+  F + +P   
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61

Query: 477 DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 511
             L +EV  V +       +  LG + I+ +  V 
Sbjct: 62  SNLVLEV-YVYNDRRSGRRRSFLGRVRISGTSFVP 95

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV 318
           LHV V++  +L   D     SDPYVK  +  DK     +KT+VK K LNP +NE   + V
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76

Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNV 346
              E     L +  W      D +G N 
Sbjct: 77  EREELPTRVLNLSVWH----RDSLGRNS 100

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 20/85 (23%)

Query: 260 GILHVKVVKAMNLK-------------KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL 306
           G L +K+ +A++LK                LL   DPYV + + +  +   KT+ K K  
Sbjct: 4   GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLL---DPYVSIDVDDTHI--GKTSTKPKTN 58

Query: 307 NPEWNEEYNFTVRDPESQAVELAVY 331
           +P WNEE  FT      + +EL V+
Sbjct: 59  SPVWNEE--FTTEVHNGRNLELTVF 81

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           L V VVKA NL   +    +DP+VK+ + +D  K+  KKT+VK  + NP +NE   F+V 
Sbjct: 17  LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76

Query: 320 DPESQAVELAV 330
               Q + L V
Sbjct: 77  AIVLQDLSLRV 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 274 KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYD 332
           KK+L+   DPYV++     K+   KT+VK  + NPEWNE+  F    P   + +++ + D
Sbjct: 31  KKELV---DPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRD 84

Query: 333 WEQVGKHDKMGMNVVPL 349
           W++VG  D +G + + L
Sbjct: 85  WDRVGNDDVIGTHFIDL 101

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 17/98 (17%)

Query: 386 FIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFR 445
           FI+K ++ EDLP+             ++     +    + E +++      +PY  + F 
Sbjct: 2   FIFKIYRAEDLPQM------------DSGIMANVKKAFLGEKKEL-----VDPYVEVSFA 44

Query: 446 GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEV 483
           G++ KT   K + +P W E+  F    PP  +R+ +++
Sbjct: 45  GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQI 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y+   G L V V+ A NL   D     DPYVK  +  D  K   +KT V  K  NP +NE
Sbjct: 10  YKN--GTLFVMVMHAKNLPLLDG-SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNE 66

Query: 313 E--YN-FTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
              Y+   V D + + ++++V+  + + +++ +G   +PLK+L   + + K
Sbjct: 67  MLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEK 117

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 26/126 (20%)

Query: 267 VKAMNLKKKDLLGASDPYVKLKITEDKLPSKK------TTVKHKNLNPEWNE----EYNF 316
           +   NL  KD+L  SDP+V + +      S +      T V   NLNP++      +Y F
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTG--GSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF 64

Query: 317 TVRDPESQAVELAVYD----WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
                E Q +   VYD     + +  HD +G     L E+      V +      + L  
Sbjct: 65  ----EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI------VSSPGQKLTLPLKG 114

Query: 373 GQNEKS 378
           G+ + +
Sbjct: 115 GKGKGT 120

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 424 VHEAQDVEGKHH---TNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
           V EA+D+  K     ++P+ R+ + G+  +T  VKK+  PRW E F+F L E   +  L 
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLS 64

Query: 481 VEV 483
           VEV
Sbjct: 65  VEV 67

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 13/86 (15%)

Query: 263 HVKVVKAMNLKKKDLLGA-SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
            V+V++A     + L+G   DP VK+++   K   K T+VK     P +NE + F   + 
Sbjct: 7   RVRVIEA-----RQLVGGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHES 58

Query: 322 ES----QAVELAVYDWEQVGKHDKMG 343
                 + ++++VYD   +     +G
Sbjct: 59  PDELFDKIIKISVYDSRSLRSDTLIG 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNF 316
           L V +++  +L   D   G SDPYVKL++  +K    KT V  K  NP ++E + F
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTF 73

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 12/115 (10%)

Query: 249 LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK----KTTVKHK 304
           LD +  Y      L V V++A ++  KD  GAS   V L +    LPSK    KT V+  
Sbjct: 5   LDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVL----LPSKKQRAKTKVQRG 60

Query: 305 NLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
             NP +NE + F+  +PE   + A+   +Y  E++ K   +G  VVPL +L  E 
Sbjct: 61  P-NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG 114

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPY--VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           L V+V++  +L  K+  G  DPY  V L  +  K  +K+T VK K  NP+++E + F V 
Sbjct: 2   LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59

Query: 320 DPESQAVELAVYDWEQVGK--------HDKMGMNVVPLKELT 353
              S   +      E   K        H  MG   V L E+ 
Sbjct: 60  IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVR 101

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 418 GLLVVIVHEAQDVEGKHH---TNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFML--E 471
           G LVV+V +A+++  K      +PY  +   G  +KTK   +  + P W+EE +F +  +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 472 EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL-IDSKN-GRI 529
           + P    L V V     R   L     +G  +++LS  +     ++ Y L +  +  G +
Sbjct: 61  KKPI---LKVAVFDDDKRKPDL-----IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEV 112

Query: 530 QIELQ 534
            +EL 
Sbjct: 113 YLELT 117

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 246 VPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSK-KTTVK 302
           VP L     Y    G L V+V+K  N K   +  A D YVKL +  ++ +  SK KT+++
Sbjct: 1   VPELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIR 60

Query: 303 HKNLNPEWNEEYNFTVRDPESQAVEL--AVYDWEQVGKHDKMG 343
               +PE+ E + F V   +   V L  +VY+  ++ + + +G
Sbjct: 61  RGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIG 103

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 262 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVR 319
           L V+VV A +L   D     +D +V++K       + KT V  K+LNP WN E + F V 
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVD 57

Query: 320 DPESQ--AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
           D E Q   +++ V D +    +D +G   + L  L  ++  
Sbjct: 58  DEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSV 98

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 420 LVVIVHEAQDVEGKHH--TNPYARI----LFRGEERKTKHVKKNRDPRWEEEFQFMLEEP 473
           L V V E +D+  K +   +P+AR+      + + ++TK  KK  +PR++E F F L   
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60

Query: 474 PTNDRLHVEVCS 485
            + ++   +V  
Sbjct: 61  FSYEKKSFKVEE 72

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTV-KHKNLNPEWNEEYNFTVR 319
            L + ++ A +LK  +L G    Y  + I  D    + T V +    NP WNE   F + 
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWI--DPSHKQSTPVDRDGGTNPTWNETLRFPLD 58

Query: 320 DPESQ----AVELAVYDWEQVGKHDK-MGMNVVPLKEL 352
           +   Q    A+ + VY  E+    DK +G   VPLK+L
Sbjct: 59  ERLLQQGRLALTIEVYC-ERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L+V+VVKA  L       ++DP V++K+   K  +K      +  NPEWN+ + F+    
Sbjct: 2   LYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIE---RTSNPEWNQVFAFSKDRL 54

Query: 322 ESQAVELAVYD 332
           +   +E++V+D
Sbjct: 55  QGSTLEVSVWD 65

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 9/105 (8%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPS--KKTTVKHKNLNP 308
           S +Y      L+V V +  NL   D     S+PYVK  +  DK     +KT++K    NP
Sbjct: 7   SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66

Query: 309 EWNEEYNFTVRDPESQ----AVELAVYDWEQVGKHDKMGMNVVPL 349
            +NE   +++    SQ     ++L+V+ +++ G++  +G   +PL
Sbjct: 67  VYNETLKYSI--SHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           L V V++A  L++ D    +  YVK  L I    + +KKT V     +P +NE ++F V 
Sbjct: 17  LTVVVLRARGLRQLDH-AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYN 315
           RR +  L V V++A  L   D   ++D YVK+         K+T V   N NP WN  ++
Sbjct: 24  RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFD 79

Query: 316 F-TVRDPESQAVELAVYD 332
           F +V       +   V+D
Sbjct: 80  FGSVELSPGGKLRFEVWD 97

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 297 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
           KKT +   N  P WNEE++F +  PE   + + V +++   K D  G   +P+ EL P  
Sbjct: 515 KKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPG- 573

Query: 357 PSVKTLDLLKNMDLNDGQNEKSRG-QLVVEFIY 388
                   ++++ L+D + EK +  +L++ FI+
Sbjct: 574 --------IRSVPLHDKKGEKLKNVRLLMRFIF 598

Length = 599

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 273 KKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332
             +   G   PY +L +    +    T VK K  NP WN    F V D     V + V D
Sbjct: 5   TSESKTGLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD 62

Query: 333 WEQVGKHDK-MGMNVVPLKEL 352
                +HD  +G   + L +L
Sbjct: 63  --DRDRHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L +++++A NL  K   G  DPY  + + + ++   +T    K LNP W EE+ F    P
Sbjct: 2   LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55

Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 353
           +     L+ Y+ ++  K   + +  V L +L 
Sbjct: 56  DVTFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK----TTVKHKNLNPEWNEEYNFTV- 318
           VKVV A +LK +   G   P+V++ +    L  KK    T  K+ N +P++NE + F + 
Sbjct: 4   VKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILG 62

Query: 319 --RDPESQAVELAVYDWEQVGKHDKM-GMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
              DPES  + + V D+    + D++ G+ V+ L+++         L L + + +++
Sbjct: 63  NEDDPESYELHICVKDY-CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHMDE 118

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 417 GGLLVVIVHEAQ-----DVEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEF 466
              L V V EA+     D  G   ++PY ++          ++KTK +KK  +P W E F
Sbjct: 12  DNKLTVEVREAKNLIPMDPNG--LSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETF 69

Query: 467 QFMLEEPPTNDRLHVEV 483
            F L+    + RL +EV
Sbjct: 70  TFDLKPADKDRRLSIEV 86

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 415 AGGGLLVVIVHEAQDVE-----GKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFM 469
           +G G L+V++ E +D++     GK   +PY  +    +E KTK V    +P+W    QF 
Sbjct: 12  SGIGRLMVVIVEGRDLKPCNSNGKS--DPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFF 69

Query: 470 LEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV 509
           +++        V   +V  R     P + LG  +I ++D+
Sbjct: 70  VKDL----EQDVLCITVFDR-DFFSPDDFLGRTEIRVADI 104

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 417 GGLLVVIVHEAQDVEGKHHTN------PYARILFRGEERKTKHVK-KNRDPRWEEEFQFM 469
           G L V+++      +G   T+      PY  I  R +ERK+K  K   R+P W E+F+F 
Sbjct: 1   GTLEVLLIS----AKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFT 56

Query: 470 LEEPPTNDRLH 480
           +E P       
Sbjct: 57  VEYPGWGGDTK 67

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEP 473
           G+L + + +A D++        +PY R+L  G  + +T  +    +P W+E     +  P
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP 60

Query: 474 PTNDRLHVEVCSVSSRIGLLHPKE-TLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIE 532
             N ++ +EV      +G    K+ +LG ++IN+SD++  K  + KY   D +  R++  
Sbjct: 61  --NQKITLEVMDYEK-VG----KDRSLGSVEINVSDLI-KKNEDGKYVEYDDEEERLKRL 112

Query: 533 L 533
           L
Sbjct: 113 L 113

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 420 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEE-PPTNDR 478
           L + V EA  +  KH  +PY  I     +     V++  +P W EE  F+ ++ PP  + 
Sbjct: 6   LQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVREGPNPVWSEE--FVFDDLPPDVNS 63

Query: 479 LHVEVCSVSSRIGLLHPKET-LGYIDINLSDVVSNKRINEKYHLI 522
             + + + + R      K++ +  + + LS + + +  +E Y L 
Sbjct: 64  FTISLSNKAKR-----SKDSEIAEVTVQLSKLQNGQETDEWYPLS 103

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V V++A +L   D     + +VK ++    L ++    + +N NP WNEE  F   +P
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTR--PSQTRNGNPSWNEELMFVAAEP 59

Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 354
               + L+V D     K + +G  V+PL ++  
Sbjct: 60  FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
            Y  P+G + V V KA +L+ +   G SDPY  + +    L   +T      LNP WNE 
Sbjct: 705 VYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN--NLVKYRTIYGSSTLNPIWNEI 762

Query: 314 YNFTVRDPESQAVELAVYDWEQVGK 338
               V    +Q + L   D+E+ G 
Sbjct: 763 LYVPVTSK-NQRLTLECMDYEESGD 786

Length = 1227

>gnl|CDD|165867 PLN02223, PLN02223, phosphoinositide phospholipase C

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 259 VGILHVKVVKA----MNLKKK-DLLGASDPYVKLKITEDKLPSK--KTTVKHKNLNPEWN 311
           V IL VK+       ++ KK+   L   D YV++ I       K  KTTVK+    P W 
Sbjct: 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWG 467

Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
           EE+ F +  P+   +   VYD+E        G   +P+ EL
Sbjct: 468 EEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSEL 508

Length = 537

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 415 AGGGLLVVIVHEAQDVEGKH--HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEE 472
            G   L V V  A  + G +   T+ Y ++ F G+E++T+ +  N +PRW   F F   E
Sbjct: 25  RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVE 84

Query: 473 PPTNDRLHVEV 483
                +L  EV
Sbjct: 85  LSPGGKLRFEV 95

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	538
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.97
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.89
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.87
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.84
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.83
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.83
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.83
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.83
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.83
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.82
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.82
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.82
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.81
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.8
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.8
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.8
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.8
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.8
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.8
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.8
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.78
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.78
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.77
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.77
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.77
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.76
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.76
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.75
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.75
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.75
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.75
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.75
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.75
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.75
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.75
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.75
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.75
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.74
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.74
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.74
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.74
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.74
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.74
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.74
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.74
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.73
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.73
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.73
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.73
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.73
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.72
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.72
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.72
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.72
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.72
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.72
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.72
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.71
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.71
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.71
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.7
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.7
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.7
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.7
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.69
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.69
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.69
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.69
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.69
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.69
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.69
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.69
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.69
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.68
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.68
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.68
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.68
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.68
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.68
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.68
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.68
PLN03008	868	Phospholipase D delta	99.67
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.67
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.67
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.67
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.67
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.67
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.66
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.66
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.66
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.66
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.66
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.66
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.65
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.65
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.65
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.65
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.65
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.65
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.65
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.65
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.65
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.64
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.64
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.64
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.64
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.64
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.64
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.64
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.64
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.64
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.63
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.63
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.63
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.63
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.63
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.63
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.62
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.62
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.62
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.61
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.61
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.61
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.61
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.61
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.61
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.6
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.6
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.59
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.59
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.59
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.59
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.59
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.58
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.58
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.58
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.58
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.58
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.57
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.57
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.57
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.57
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.56
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.56
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.56
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.55
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.54
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.52
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.52
PLN03008	868	Phospholipase D delta	99.52
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.51
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.51
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.51
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.49
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.49
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.49
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.48
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.48
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.46
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.43
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.42
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.41
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.41
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.37
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.35
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.32
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.3
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.28
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.28
PF10296	91	DUF2404: Putative integral membrane protein conser	99.24
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.21
PLN02270	808	phospholipase D alpha	99.19
PLN02270	808	phospholipase D alpha	99.18
PLN02223	537	phosphoinositide phospholipase C	99.16
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.16
PLN02952	599	phosphoinositide phospholipase C	99.08
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.07
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.06
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.06
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.04
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.01
PLN02230	598	phosphoinositide phospholipase C 4	98.97
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.95
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.91
PLN02228	567	Phosphoinositide phospholipase C	98.91
PLN02222	581	phosphoinositide phospholipase C 2	98.9
PLN02223	537	phosphoinositide phospholipase C	98.89
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.89
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.81
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.79
PLN02952	599	phosphoinositide phospholipase C	98.76
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.74
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.71
PLN02222	581	phosphoinositide phospholipase C 2	98.64
PLN02352	758	phospholipase D epsilon	98.62
PLN02230	598	phosphoinositide phospholipase C 4	98.62
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.62
PLN02352	758	phospholipase D epsilon	98.62
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.53
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.51
PLN02228	567	Phosphoinositide phospholipase C	98.49
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.43
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.27
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.25
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.25
KOG3532	1051	consensus Predicted protein kinase [General functi	98.24
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.13
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.05
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.91
PLN02964	644	phosphatidylserine decarboxylase	97.78
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.76
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.66
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.57
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.45
PLN02964	644	phosphatidylserine decarboxylase	97.34
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.26
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.16
PF15627	156	CEP76-C2: CEP76 C2 domain	97.01
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.0
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.95
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.69
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.24
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.86
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.49
PF15627	156	CEP76-C2: CEP76 C2 domain	95.45
KOG1452	442	consensus Predicted Rho GTPase-activating protein	95.38
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.34
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.27
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	95.18
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.11
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.06
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.84
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.19
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.85
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.58
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	93.43
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.41
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.2
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	93.11
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.15
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.01
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	91.24
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.31
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	89.46
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	89.28
KOG1452	442	consensus Predicted Rho GTPase-activating protein	87.87
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	87.86
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	87.58
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	87.49
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	86.43
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	81.61
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	80.46
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	80.27

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=1.3e-67  Score=560.66  Aligned_cols=495  Identities=26%  Similarity=0.508  Sum_probs=415.8

Q ss_pred             cccchhhhccccchhhhhHHHhheeeeEEEecCCCCCccccccc--ccCHHHHHhhcCCCCCceeCCCCcchHHHHHHHH
Q 009307            2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLV--ERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLE   79 (538)
Q Consensus         2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~w~~~~~~E~~~WlN~~l~   79 (538)
                      |++||++|++||+++.++++++.+ +++|++..++.++.+|.+.  ++..++++            .|+|++||||.+|+
T Consensus       165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~  231 (1227)
T COG5038         165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ  231 (1227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence            578999999999998887776655 5667776555555666653  22233333            79999999999999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEeeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEe---------
Q 009307           80 LMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWA---------  149 (538)
Q Consensus        80 ~~W~~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~l~~~~~~~---------  149 (538)
                      ++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. .+|.+.||++++|.         
T Consensus       232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~  310 (1227)
T COG5038         232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA  310 (1227)
T ss_pred             hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence            99999999999999999999999999999 99999999999999999999999985 77899999999995         


Q ss_pred             ------CCCCeEEEEEE---ec-eeeEEEEEeEEEEEEEEEEEecCCCCCCeeEEEEEEcCCCCeEEEEEEEcc-----c
Q 009307          150 ------ANPNVTIGVKA---FG-LKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----A  214 (538)
Q Consensus       150 ------~~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g-----~  214 (538)
                            -|++|.|.++.   +| +++||.|+|+.|.|++||+++ |++.+|++..+.++|++.|++||.++|+|     .
T Consensus       311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~  389 (1227)
T COG5038         311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV  389 (1227)
T ss_pred             HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence                  35678888865   45 899999999999999999998 99999999999999999999999999986     4


Q ss_pred             cccccchHHHHHHHHHHHHHhhhcccCccccccccCCCcc-CCCCeeEEEEEEEeecCCccCC--CCCCCCcEEEEEEcC
Q 009307          215 DLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKD--LLGASDPYVKLKITE  291 (538)
Q Consensus       215 ~~~~~P~l~~~i~~~i~~~l~~~~v~P~~~~~pi~~~~~~-~~~~~g~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~  291 (538)
                      |++++|||.+||+++|...+++|+++|+.+++++...... ...+.|+|.|+|.+|++|...+  ..+..|||+++...+
T Consensus       390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~  469 (1227)
T COG5038         390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD  469 (1227)
T ss_pred             eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence            7999999999999999999999999999999988643332 6779999999999999999988  578999999999765


Q ss_pred             ccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEE-EEeccccccc
Q 009307          292 DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK-TLDLLKNMDL  370 (538)
Q Consensus       292 ~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~l~~~~~~  370 (538)
                      ...  .||++.+++.||+|||+|++.+... ++.|.++|||.+...+|+.+|+..++|..|........ ...+.     
T Consensus       470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-----  541 (1227)
T COG5038         470 RVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-----  541 (1227)
T ss_pred             ccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-----
Confidence            543  4999999999999999999999765 78999999999999999999999999999987754433 22322     


Q ss_pred             CCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC-C-CCCcEEEEEECCeE
Q 009307          371 NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-H-HTNPYARILFRGEE  448 (538)
Q Consensus       371 ~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~-~-~~dpyv~v~~~~~~  448 (538)
                         .+.+..|+|+.+++|+|..++........       .+....++|++.+++.++++|... + ....+++++.+.+.
T Consensus       542 ---~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-------e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke  611 (1227)
T COG5038         542 ---RNTKNVGRLTYDLRFFPVIEDKKELKGSV-------EPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKE  611 (1227)
T ss_pred             ---ccCccceEEEEeeeeecccCCcccccccc-------CCcccCCcceeEEEeeccccccCccccccceeEEEEecceE
Confidence               25788999999999999877643222110       011223579999999999999763 2 23345899998876


Q ss_pred             E-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccc-eeceEEEeCCCCC
Q 009307          449 R-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDSKN  526 (538)
Q Consensus       449 ~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~  526 (538)
                      . .|+..+.+.+|.||+.+...+.+. ....+.+.++|...       .+.+|+...+|.+++... .-..||++. +++
T Consensus       612 V~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~k  682 (1227)
T COG5038         612 VYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDLIDRTLDTFLVFPLR-NPK  682 (1227)
T ss_pred             EeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHhhhccccceEEEEcC-CCc
Confidence            5 568999999999999999999875 55678888888742       479999999999998865 345799987 679


Q ss_pred             cEEEEEEEEEeC
Q 009307          527 GRIQIELQWRTA  538 (538)
Q Consensus       527 G~I~l~~~w~p~  538 (538)
                      |+|.++.-|+|.
T Consensus       683 g~I~~t~~W~Pi  694 (1227)
T COG5038         683 GRIFITNYWKPI  694 (1227)
T ss_pred             ceEEEEecccee
Confidence            999999999994

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.4e-30  Score=263.13  Aligned_cols=222  Identities=29%  Similarity=0.474  Sum_probs=190.2

Q ss_pred             cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEEE
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY  331 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~  331 (538)
                      .++.....|.|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++++||.|||+|.|.+..  .....|.+.||
T Consensus       161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~  240 (421)
T KOG1028|consen  161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY  240 (421)
T ss_pred             EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence            4667789999999999999999966789999999999988778899999999999999999999653  34789999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCC
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE  411 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~  411 (538)
                      |+|++++|++||++.++|..+........|.++.......    ....|+|.++++|.|.                    
T Consensus       241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~--------------------  296 (421)
T KOG1028|consen  241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT--------------------  296 (421)
T ss_pred             ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC--------------------
Confidence            9999999999999999999999887778888886543322    2223899999999973                    


Q ss_pred             CCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEE
Q 009307          412 NTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVE  482 (538)
Q Consensus       412 ~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~-~l~v~  482 (538)
                           .|.|+|.|.+|+||...   +..||||++++..     ++++|.+.+++.||+|||+|.|.+......+ .+.++
T Consensus       297 -----~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~  371 (421)
T KOG1028|consen  297 -----AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT  371 (421)
T ss_pred             -----CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence                 78999999999999863   5789999999843     2459999999999999999999887543333 79999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechh
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSD  508 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~  508 (538)
                      |||++.    ++.+++||++.+....
T Consensus       372 V~d~d~----~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  372 VWDHDT----LGSNDLIGRCILGSDS  393 (421)
T ss_pred             EEEccc----ccccceeeEEEecCCC
Confidence            999987    6788899999998875

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.89  E-value=1.2e-22  Score=207.17  Aligned_cols=243  Identities=19%  Similarity=0.295  Sum_probs=194.1

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      ...|.|+|.+|+||+..+..|.+||||.|.++.+..  .||.++.+++.|.|.|+|+|.+... -+.|.|-|||+| +++
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~   79 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKR   79 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccc
Confidence            356899999999999999999999999999998765  6899999999999999999999654 688999999999 999


Q ss_pred             CcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCce
Q 009307          339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG  418 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g  418 (538)
                      |+.||++.|.-.+|....+.+.|+.|.+ .++    +....|++++++.+.+...+.                       
T Consensus        80 D~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~~-----------------------  131 (800)
T KOG2059|consen   80 DDIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQSS-----------------------  131 (800)
T ss_pred             ccccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCCC-----------------------
Confidence            9999999999999988778888888743 333    477999999999998653321                       


Q ss_pred             EEEEEEEeeecCCC--CCCCCcEEEEEECCeE----EEeeeecCCCCCcccceEEEEecCC-----------C---CCCe
Q 009307          419 LLVVIVHEAQDVEG--KHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP-----------P---TNDR  478 (538)
Q Consensus       419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~----~kT~v~~~t~nP~w~e~f~f~v~~~-----------~---~~~~  478 (538)
                      -+...+.+++++.+  ++.+|||+++...+..    .+|.+.++|.+|.|+|.|.|.+...           +   ..-.
T Consensus       132 ~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~  211 (800)
T KOG2059|consen  132 GLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLE  211 (800)
T ss_pred             cchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceee
Confidence            12233344444432  3569999999997644    4999999999999999999988743           0   1226


Q ss_pred             EEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC----------CcEEEEEEEEE
Q 009307          479 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK----------NGRIQIELQWR  536 (538)
Q Consensus       479 l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~----------~G~I~l~~~w~  536 (538)
                      |.+++|+....   ..++.++|++.+++...........||.|...+          -|.+++.+.|.
T Consensus       212 irv~lW~~~~~---~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  212 IRVDLWNDLNL---VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             EEEeeccchhh---hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence            88889985432   445899999999999988666778999996321          38888888764

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.87  E-value=1.2e-21  Score=166.11  Aligned_cols=119  Identities=21%  Similarity=0.369  Sum_probs=101.6

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCC-CCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG  337 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  337 (538)
                      .|.|.|+|++|++++..+ .|++||||++.+++++   .+|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~   75 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT   75 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence            489999999999998777 7999999999998765   48999865 89999999999999764 468999999999999


Q ss_pred             CCcccEEEEEeCc-cCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          338 KHDKMGMNVVPLK-ELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       338 ~d~~lG~~~i~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      +|++||++.+++. .+..++....|++|...      +..+..|+|+|+++|
T Consensus        76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y  121 (121)
T cd04016          76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY  121 (121)
T ss_pred             CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence            9999999999996 57777777888887431      124578999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=2.9e-20  Score=159.39  Aligned_cols=121  Identities=29%  Similarity=0.487  Sum_probs=106.3

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD  340 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  340 (538)
                      .|+|+|++|++|+..|..|.+||||++++++..  ..+|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~   77 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD   77 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence            489999999999999988999999999998633  36899999999999999999998765 578999999999999999


Q ss_pred             ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      +||++.++++++..+...+.|++|...      ++.+..|+|++.++|.|
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP  121 (121)
T ss_pred             ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence            999999999999998888899988431      12467899999999865

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=2.6e-20  Score=160.85  Aligned_cols=119  Identities=27%  Similarity=0.481  Sum_probs=100.6

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC-----CCCCEEEEEEEeccCC
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-----PESQAVELAVYDWEQV  336 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~v~d~~~~  336 (538)
                      ++|+|++|+||+.++..|.+||||++++++.+   .+|++++++.||+|||+|.|.+..     .....|.++|||++.+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            57999999999999888999999999998654   589999999999999999999976     3467899999999999


Q ss_pred             CCCcccEEEEEeCccCC--CCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009307          337 GKHDKMGMNVVPLKELT--PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI  387 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~  387 (538)
                      ++|++||++.++++++.  .+.....|++|....    .+..+..|+|+++++
T Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~  126 (126)
T cd08682          78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence            99999999999999987  455667888875321    123467899999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.83  E-value=7.8e-20  Score=159.27  Aligned_cols=121  Identities=30%  Similarity=0.496  Sum_probs=103.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE  334 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~  334 (538)
                      .....|.|+|+|++|++|+..|..|.+||||+++++...   .+|++++++.||.|||+|.|.+.+...+.|.++|||++
T Consensus        10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d   86 (136)
T cd08375          10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD   86 (136)
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence            456789999999999999999988999999999997654   59999999999999999999998776789999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          335 QVGKHDKMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      ..++|++||++.+++.++....     ....++.+          ..+.+|+|++++++
T Consensus        87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~  135 (136)
T cd08375          87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence            9999999999999999998622     11223332          25678999999986

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.83  E-value=3.9e-20  Score=157.99  Aligned_cols=117  Identities=30%  Similarity=0.443  Sum_probs=100.5

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      |.|+|+|++|++|+..+..+.+||||++++++..   .+|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence            6899999999999999988999999999998754   4788765 5799999999999998766789999999998776 


Q ss_pred             CcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      |++||++.+++.++..+.....|+++..        +++..|+|+++++|
T Consensus        77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f  118 (118)
T cd08681          77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF  118 (118)
T ss_pred             CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence            8999999999999877666677777643        24678999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=8.7e-20  Score=155.32  Aligned_cols=115  Identities=30%  Similarity=0.510  Sum_probs=103.0

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD  340 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  340 (538)
                      +++|+|++|++|+..+..+.+||||++++++..   .+|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~   77 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE   77 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            478999999999999988999999999997654   58999999999999999999998766789999999999989999


Q ss_pred             ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      +||++.+++.++..+.....|++|.           ...|+|++.++|.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~  115 (116)
T cd08376          78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT  115 (116)
T ss_pred             eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence            9999999999999888889999873           2369999998774

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.83  E-value=1.1e-19  Score=155.35  Aligned_cols=117  Identities=31%  Similarity=0.508  Sum_probs=102.1

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999998889999999999975433456999999999999999999999766567899999999988 8999


Q ss_pred             cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      ||++.++++++..+.....|+++.          .+..|+|++++.+.
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~~  118 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLLE  118 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEee
Confidence            999999999999988888899873          34589999888653

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=8.9e-20  Score=155.62  Aligned_cols=116  Identities=28%  Similarity=0.411  Sum_probs=98.9

Q ss_pred             EEEEEEEeecC---CccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307          261 ILHVKVVKAMN---LKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG  337 (538)
Q Consensus       261 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  337 (538)
                      .|+|+|++|+|   |+.+|..|.+||||++++++++   .||+++++++||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence            48999999999   8888989999999999998765   4899999999999999999999875 468999999999863


Q ss_pred             ------CCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEE
Q 009307          338 ------KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV  384 (538)
Q Consensus       338 ------~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l  384 (538)
                            +|++||++.++++.+..+.....|++|... +   +...+..|+|+.
T Consensus        77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~  125 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC  125 (126)
T ss_pred             ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence                  899999999999999988887888888532 1   123557788764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.82  E-value=3.4e-20  Score=159.96  Aligned_cols=100  Identities=46%  Similarity=0.736  Sum_probs=92.6

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV  336 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  336 (538)
                      ...|.|+|+|++|.||..+|..+++||||++.+++++.   +|+++++++||+|||+|.|.+.++ ...|++.|||+|.+
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f   78 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF   78 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence            46899999999999999999889999999999999885   899999999999999999999988 78999999999999


Q ss_pred             CCCcccEEEEEeCccCCCCCCeEE
Q 009307          337 GKHDKMGMNVVPLKELTPEEPSVK  360 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~~~~~~~~  360 (538)
                      ++||+||.++|+|..+.......+
T Consensus        79 s~dD~mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   79 SSDDFMGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             CcccccceeeeccHHHHHHhhhhc
Confidence            999999999999999987654443

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.82  E-value=3.9e-20  Score=154.06  Aligned_cols=106  Identities=18%  Similarity=0.325  Sum_probs=89.5

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC-ccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY  331 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  331 (538)
                      +....|.|+|+|++|+||+ .  .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+...  ....|.++||
T Consensus         9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~   85 (118)
T cd08677           9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR   85 (118)
T ss_pred             EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence            4556899999999999998 3  36799999999975 344567999999999999999999998743  3678999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEe
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD  363 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~  363 (538)
                      |+|+++++++||++.++++++..+.+.+.|.+
T Consensus        86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~  117 (118)
T cd08677          86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD  117 (118)
T ss_pred             eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence            99999999999999999998866555555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=1.4e-19  Score=153.09  Aligned_cols=107  Identities=26%  Similarity=0.418  Sum_probs=92.0

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcC----ccCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEEEEecc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITE----DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWE  334 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~  334 (538)
                      |+|+|++|++|+..+ .|.+||||++++.+    .+.++++|+++++++||+|||+|.|.+...   ....|.|.|||++
T Consensus         2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            899999999999888 49999999999842    333456899999999999999999999743   3467999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEecccccc
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD  369 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~  369 (538)
                      ..++|++||++.++++++..++....|++|.+...
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~  115 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH  115 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence            88889999999999999999988889999865443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.82  E-value=2e-19  Score=152.51  Aligned_cols=112  Identities=23%  Similarity=0.441  Sum_probs=97.4

Q ss_pred             eEEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307          418 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH  494 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~  494 (538)
                      |.|+|+|++|++++..  +.+||||++.+++++.+|+++.+ +.||+|||.|.|.+.+.  ...+.|+|||++.    ++
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~~   75 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----FT   75 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----Cc
Confidence            7899999999988653  68999999999999999999876 89999999999999753  3579999999986    67


Q ss_pred             CCceeEEEEEech-hhcccceeceEEEeCC----CCCcEEEEEEEE
Q 009307          495 PKETLGYIDINLS-DVVSNKRINEKYHLID----SKNGRIQIELQW  535 (538)
Q Consensus       495 ~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~----~~~G~I~l~~~w  535 (538)
                      +|++||++.+++. .+..+...+.||+|.+    ...|+|+|+++|
T Consensus        76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             CCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            8999999999996 4666666899999986    346999999976

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.82  E-value=2.1e-18  Score=185.87  Aligned_cols=310  Identities=23%  Similarity=0.390  Sum_probs=222.8

Q ss_pred             chHHHHHHHHHHHHHhhhcccCcc-------ccc---cccC----CCc-cCCCCeeEEEEEEEeecCCccCCCCCCCCcE
Q 009307          220 PGLYRFVQELIKTQVANMYLWPKT-------LEV---PILD----PSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPY  284 (538)
Q Consensus       220 P~l~~~i~~~i~~~l~~~~v~P~~-------~~~---pi~~----~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpy  284 (538)
                      +....=+.+.|.......++.|.+       ++.   |+-.    .+. .+..+.|.++|+|..|.+|......+++|||
T Consensus       656 ~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPy  735 (1227)
T COG5038         656 ATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPY  735 (1227)
T ss_pred             ccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccc
Confidence            444444556666666777777765       111   4432    112 4778999999999999999987778999999


Q ss_pred             EEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCe---EEE
Q 009307          285 VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS---VKT  361 (538)
Q Consensus       285 v~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~---~~~  361 (538)
                      +++.+++..  ++||-....+.||.|||..+..+..+ .+.+.++++|++..+.|..+|++.++++++......   ...
T Consensus       736 a~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~  812 (1227)
T COG5038         736 ATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMET  812 (1227)
T ss_pred             eEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEe
Confidence            999998744  47898889999999999999999876 678999999999999999999999999998763221   112


Q ss_pred             EecccccccCCCCCCccccEEEEEEEEEeccCCCCC------------------------C-------------------
Q 009307          362 LDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLP------------------------K-------------------  398 (538)
Q Consensus       362 ~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~------------------------~-------------------  398 (538)
                      ..-.....+....+....|++.+.+.|+|..-.-..                        +                   
T Consensus       813 i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~  892 (1227)
T COG5038         813 IDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVE  892 (1227)
T ss_pred             ecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeec
Confidence            111111111001135678999999999985321000                        0                   


Q ss_pred             ---c---------c-------------------------------cc--------cc----c------------------
Q 009307          399 ---S---------F-------------------------------EE--------SQ----T------------------  405 (538)
Q Consensus       399 ---~---------~-------------------------------~~--------~~----~------------------  405 (538)
                         +         .                               ++        +.    .                  
T Consensus       893 ~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~  972 (1227)
T COG5038         893 ELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSE  972 (1227)
T ss_pred             cccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccce
Confidence               0         0                               00        00    0                  


Q ss_pred             ----ccc-CCCC--------------------------------------------------CCCCceEEEEEEEeeecC
Q 009307          406 ----VQK-APEN--------------------------------------------------TPAGGGLLVVIVHEAQDV  430 (538)
Q Consensus       406 ----~~~-~~~~--------------------------------------------------~~~~~g~L~v~v~~a~~L  430 (538)
                          ..+ ++..                                                  .-.++|.|.|.+.+|.||
T Consensus       973 ~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl 1052 (1227)
T COG5038         973 TTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENL 1052 (1227)
T ss_pred             EEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCC
Confidence                000 0000                                                  001478889999999999


Q ss_pred             CCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEec
Q 009307          431 EGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL  506 (538)
Q Consensus       431 ~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l  506 (538)
                      +..   +.+||||++.++++ .++|++++++.||+|||.|...+.+. ..+.+.+.|+|++..    .+++.||.+.++|
T Consensus      1053 ~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~----~knd~lg~~~idL 1127 (1227)
T COG5038        1053 PSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG----EKNDLLGTAEIDL 1127 (1227)
T ss_pred             cccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC----CCccccccccccH
Confidence            863   56999999999987 57999999999999999999999875 567899999999863    5789999999999


Q ss_pred             hhhcccceeceEEEeCCCC----CcEEEEEEEEEe
Q 009307          507 SDVVSNKRINEKYHLIDSK----NGRIQIELQWRT  537 (538)
Q Consensus       507 ~~l~~~~~~~~~~~L~~~~----~G~I~l~~~w~p  537 (538)
                      +.+..++......+|.+..    +|.++....+++
T Consensus      1128 ~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038        1128 SKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred             hhcCcCCccceeeeccCcceEecccEeecceecch
Confidence            9998887666666665543    577776666654

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=5.5e-19  Score=156.32  Aligned_cols=128  Identities=22%  Similarity=0.326  Sum_probs=105.2

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCC-CCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH  339 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  339 (538)
                      .|+|+|++|++|+.++..|.+||||+++++++.   .+|+++.+ +.||+|||+|.|.+.++..+.|.++|||++..++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d   77 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD   77 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence            389999999999999999999999999999754   48888876 69999999999999876667999999999988899


Q ss_pred             cccEEEEEeCccCCCC----CCeEEEEeccccccc-CCCCCCccccEEEEEEEEEec
Q 009307          340 DKMGMNVVPLKELTPE----EPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       340 ~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      ++||++.++|+++..+    .....|++|...... ++.+..+..|+|+++++|.+.
T Consensus        78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~  134 (150)
T cd04019          78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG  134 (150)
T ss_pred             CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence            9999999999998753    335678887653211 012235678999999999854

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.80  E-value=5.8e-19  Score=154.18  Aligned_cols=111  Identities=28%  Similarity=0.462  Sum_probs=95.6

Q ss_pred             eeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE-ecc
Q 009307          259 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DWE  334 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~~  334 (538)
                      .|.|.|+|++|+||+..+ ..|.+||||++++.+..  ..++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence            589999999999999864 56889999999996543  34679999999999999999999998 56789999999 678


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEeccccccc
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL  370 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~  370 (538)
                      ..+++++||++.|+|+++..+.....|++|.+...+
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~  142 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL  142 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence            888999999999999999877777789988665433

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=4.4e-19  Score=153.43  Aligned_cols=120  Identities=33%  Similarity=0.499  Sum_probs=100.9

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC---CCEEEEEEEeccCCC-
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVG-  337 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~-  337 (538)
                      |+|+|++|++|+..+..|.+||||+++++++.   ++|++++++.||.|||+|.|.+.++.   ...|.|+|||++..+ 
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~   78 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR   78 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence            89999999999999988999999999998764   48999999999999999999987543   368999999999876 


Q ss_pred             CCcccEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          338 KHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       338 ~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      +|++||++.++++++. .+.....|++|.+..     ..++.+|+|++++.+.
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~  126 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence            8999999999999998 455567788875421     1245789999998763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.80  E-value=7.3e-19  Score=150.19  Aligned_cols=119  Identities=17%  Similarity=0.283  Sum_probs=100.7

Q ss_pred             EEEEEEeecCCccCC-CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307          262 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD  340 (538)
Q Consensus       262 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  340 (538)
                      |.|+|++|+||+..+ ..|.+||||++++++..  ..+|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~   78 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS   78 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence            689999999999874 45789999999997553  36899999999999999999999754 579999999999999999


Q ss_pred             ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      +||++.++++++..+...+.|++|.+..     ..++..|+|++++.|
T Consensus        79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~  121 (121)
T cd08401          79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL  121 (121)
T ss_pred             eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence            9999999999999887788898885421     124468999998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.80  E-value=6.9e-19  Score=151.37  Aligned_cols=121  Identities=26%  Similarity=0.485  Sum_probs=103.4

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |+|+|++|++|+..+..+.+||||++++++..   .+|++++++.||.|||+|.|.+.......|.|+|||++..+++++
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~   78 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF   78 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence            89999999999999988899999999997654   589999999999999999999987667889999999999999999


Q ss_pred             cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009307          342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF  386 (538)
Q Consensus       342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l  386 (538)
                      ||++.+++.++..+.....|+.+..... .....++..|.|++.+
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~-~~~~~~~~~G~l~~~~  122 (123)
T cd04025          79 LGKVVFSIQTLQQAKQEEGWFRLLPDPR-AEEESGGNLGSLRLKV  122 (123)
T ss_pred             eEEEEEEHHHcccCCCCCCEEECCCCCC-CCccccCceEEEEEEe
Confidence            9999999999987766777888764332 2233467889998876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=6.4e-19  Score=152.82  Aligned_cols=123  Identities=29%  Similarity=0.476  Sum_probs=103.2

Q ss_pred             eEEEEEEEeecCCccCCC--CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307          260 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG  337 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  337 (538)
                      |.|+|+|++|++|+..+.  .+.+||||++++++..   .+|++++++.||.|||+|.|.+.....+.|.|+|||++..+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~   77 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA   77 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999999999888  7899999999997654   59999999999999999999998766789999999999988


Q ss_pred             CCcccEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          338 KHDKMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       338 ~d~~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      ++++||++.+++.++..   ......|+.|....   ...+....|+|+++++|
T Consensus        78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence            99999999999999873   23346777764321   11235689999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.80  E-value=1.3e-18  Score=150.19  Aligned_cols=122  Identities=25%  Similarity=0.468  Sum_probs=102.9

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |.|+|++|+||+.  ..|.+||||+++++... ..++|++++++.||+|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-QKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-cEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence            5799999999987  56899999999997432 34699999999999999999999854 36789999999999999999


Q ss_pred             cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      ||++.+++.++..+.....|+++.....    .+....|+|++++.|.+.
T Consensus        77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence            9999999999998877777887753211    135679999999999864

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.80  E-value=7.9e-19  Score=151.34  Aligned_cols=122  Identities=31%  Similarity=0.497  Sum_probs=101.0

Q ss_pred             eeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307          259 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG  337 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  337 (538)
                      .|.|+|+|++|++|+..+ ..+.+||||++++++. ....+|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence            489999999999999765 3467999999999873 23469999999999999999999987 34789999999999988


Q ss_pred             CCcccEEEEEeCccCCCCCCeE-EEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          338 KHDKMGMNVVPLKELTPEEPSV-KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       338 ~d~~lG~~~i~l~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      +|++||++.+++.++....... .+..+.        .+++..|+|+++++|.|
T Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence            9999999999999999775543 222221        13567899999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=1.9e-18  Score=148.98  Aligned_cols=122  Identities=22%  Similarity=0.341  Sum_probs=101.6

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      ...|+|+|++|+||+..   +.+||||++++++..  ..+|++. ++.||.|||+|.|.+.......+.|.|||++..++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~   76 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK   76 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence            45799999999999874   478999999997643  3578874 68999999999998765544689999999999999


Q ss_pred             CcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      |++||++.++|.++..+...+.|+++.+..    ..+.+..|+|+++++|.+
T Consensus        77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence            999999999999999888778898885431    123567899999999985

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=4.4e-19  Score=151.77  Aligned_cols=105  Identities=30%  Similarity=0.414  Sum_probs=91.8

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEe-e--CCCCCEEEEEEEec
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV-R--DPESQAVELAVYDW  333 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~v~d~  333 (538)
                      .+.|.|+|++|+||+..+ .+.+||||++++.+..  ..+++|++++++.||.|||+|.|.+ .  +.....|.++|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            588999999999999999 8999999999997542  3357999999999999999999987 2  33467899999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      +..+++++||++.++|+++..++....|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999999987766777765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.80  E-value=6.1e-19  Score=146.93  Aligned_cols=113  Identities=22%  Similarity=0.253  Sum_probs=95.7

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCCCCCCcEEEEEECC----eEEEeeeec
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKTKHVK  455 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~  455 (538)
                      |+|++++.|.|                         ..+.|+|+|++|++|+..+.+||||++++..    .+++|++.+
T Consensus         1 ~~l~fsL~Y~~-------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r   55 (118)
T cd08677           1 PKLHYSLSYDK-------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK   55 (118)
T ss_pred             CeEEEEEEEcC-------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence            57999999986                         3789999999999998767799999999964    356999999


Q ss_pred             CCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307          456 KNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL  521 (538)
Q Consensus       456 ~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  521 (538)
                      +|.||+|||+|.|.+..... ...|.++|||+++    ++++++||++.++++++.......+|-+|
T Consensus        56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccccCCccccchhcC
Confidence            99999999999999875432 3379999999997    78999999999999987555555677554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.79  E-value=2.2e-18  Score=148.65  Aligned_cols=123  Identities=20%  Similarity=0.330  Sum_probs=101.9

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG  337 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  337 (538)
                      |.++|+|+|++|++|+..+..|.+||||+++++++.   .+|++++++.||+|||.|.|.+.+. ...|.|+|||++.. 
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence            468999999999999999988999999999998765   5999999999999999999988765 67899999999876 


Q ss_pred             CCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          338 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      +|++||++.+++.++......++  ++....   ...+++..|+|.+++.+.+
T Consensus        76 ~d~~lG~~~~~l~~~~~~~~~~~--~l~~~~---~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 CDEFLGQATLSADPNDSQTLRTL--PLRKRG---RDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCCceEEEEEecccCCCcCceEE--EcccCC---CCCCCCCCCEEEEEEEEcc
Confidence            58999999999998765544444  443211   1235788999999998775

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.1e-18  Score=149.76  Aligned_cols=115  Identities=30%  Similarity=0.503  Sum_probs=100.3

Q ss_pred             eEEEEEEEeecCCccCCC------CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          260 GILHVKVVKAMNLKKKDL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      |+|+|+|++|+||+..+.      .|.+||||++++++.   .++|++++++.||+|||+|.|.+.+...+.|.++|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            689999999999998874      368999999999873   36999999999999999999999876678999999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      +.. +|++||++.++++++..+.....|++|.          ....|+|+++++|
T Consensus        78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~  121 (121)
T cd08391          78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW  121 (121)
T ss_pred             CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence            987 8999999999999998877777888873          2367999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.9e-18  Score=148.27  Aligned_cols=112  Identities=30%  Similarity=0.553  Sum_probs=100.6

Q ss_pred             eEEEEEEEeeecCCCC---------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307          418 GLLVVIVHEAQDVEGK---------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS  488 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~  488 (538)
                      |+|+|+|++|+||+..         +.+||||++++++...+|++++++.||.|||.|.|.+.+. ..+.+.++|||++.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence            6799999999999753         3689999999999889999999999999999999999764 45689999999975


Q ss_pred             CccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEE
Q 009307          489 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW  535 (538)
Q Consensus       489 ~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w  535 (538)
                          . ++++||++.++++++..++...+||+|.+..+|+|+|+++|
T Consensus        80 ----~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          80 ----D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             ----C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence                4 78999999999999998777889999998889999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.78  E-value=3.2e-18  Score=153.07  Aligned_cols=124  Identities=27%  Similarity=0.441  Sum_probs=103.5

Q ss_pred             CeeEEEEEEEeecCCccCC------------------------------CCCCCCcEEEEEEcCccCCeeeeeecCCCCC
Q 009307          258 PVGILHVKVVKAMNLKKKD------------------------------LLGASDPYVKLKITEDKLPSKKTTVKHKNLN  307 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~n  307 (538)
                      -.|+|.|+|++|++|+++|                              ..|.+||||++++++...  .+|++++++.|
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~n   82 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSEN   82 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCC
Confidence            3699999999999999987                              246789999999987543  58999999999


Q ss_pred             CeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009307          308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI  387 (538)
Q Consensus       308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~  387 (538)
                      |+|||+|.|.+... .+.|.|+|||++..+ +++||++.++++++..+...+.|+++....    .+..+..|+|+++++
T Consensus        83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~  156 (158)
T cd04015          83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQ  156 (158)
T ss_pred             CccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEE
Confidence            99999999998765 578999999999775 689999999999999888888899885421    112445789999998


Q ss_pred             EE
Q 009307          388 YK  389 (538)
Q Consensus       388 ~~  389 (538)
                      |.
T Consensus       157 f~  158 (158)
T cd04015         157 FT  158 (158)
T ss_pred             EC
Confidence            84

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=1.1e-18  Score=150.11  Aligned_cols=110  Identities=30%  Similarity=0.437  Sum_probs=94.3

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~  329 (538)
                      +....+.|.|+|++|+||+.++.. |.+||||++++.+..  ..+++|++++++.||+|||+|.|.+..  .....|.++
T Consensus        10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~   89 (125)
T cd08393          10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS   89 (125)
T ss_pred             EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence            344568999999999999999875 899999999996543  334699999999999999999999864  235789999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |||++..+++++||++.++|.++...+....|++|
T Consensus        90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            99999999999999999999999877666777765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=1.8e-18  Score=148.67  Aligned_cols=110  Identities=27%  Similarity=0.479  Sum_probs=95.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCC-CCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  329 (538)
                      +....|.|.|+|++|+||+..+. .|.+||||++++.+..  ..++||++++++.||.|||+|.|.+...  ....|.|+
T Consensus        10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~   89 (125)
T cd04029          10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS   89 (125)
T ss_pred             EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            45578999999999999998765 4789999999997543  3457999999999999999999998642  35689999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |||++..+++++||++.+++.++...+....|++|
T Consensus        90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            99999999999999999999999988878888876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=3.6e-18  Score=145.90  Aligned_cols=114  Identities=26%  Similarity=0.436  Sum_probs=96.1

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |.|+|++|+||+..    .+||||++++++..   .+|++++++.||+|||+|.|.+.......|.++|||++.. ++++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~   73 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF   73 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence            78999999999877    78999999998643   5999999999999999999998776678999999999976 7899


Q ss_pred             cEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          342 MGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       342 lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      ||++.++++++....     ....|++|...      .+.+.+|+|++++.|-
T Consensus        74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~  120 (121)
T cd08378          74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG  120 (121)
T ss_pred             eeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence            999999999987543     23467777432      1256889999999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.77  E-value=2e-18  Score=148.69  Aligned_cols=110  Identities=31%  Similarity=0.621  Sum_probs=96.6

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....|.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+...  ....|.++|||
T Consensus        11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d   90 (124)
T cd08387          11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD   90 (124)
T ss_pred             ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence            4556799999999999999999889999999999965434457999999999999999999998643  25689999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ++.++++++||++.++++++..++....|+++
T Consensus        91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            99999999999999999999987778888876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.77  E-value=4.5e-18  Score=148.47  Aligned_cols=123  Identities=36%  Similarity=0.620  Sum_probs=101.1

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV  336 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  336 (538)
                      .|+|+|++|++|+..+..|.+||||++++.+..    ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            489999999999999988999999999997652    2245899999999999999999998654 57899999999999


Q ss_pred             CCCcccEEEEEeCccCCCCCC------eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          337 GKHDKMGMNVVPLKELTPEEP------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      ++|++||++.+++.++..+..      ...|++|.+.     ...++..|+|++++.|.
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence            999999999999999886543      2356665431     11256799999999873

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.77  E-value=4.1e-18  Score=147.13  Aligned_cols=111  Identities=25%  Similarity=0.375  Sum_probs=95.1

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC----CCCCeEEEEEEEcccCccC
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP----PTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~~l~v~V~d~~~~~g~  492 (538)
                      ++|+|++|+||+..   +.+||||++.+++.+.+|++++++.||+|||.|.|.+...    .....|.++|||++.    
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~----   76 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL----   76 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence            47999999999753   5789999999999999999999999999999999999762    234589999999985    


Q ss_pred             CCCCceeEEEEEechhhc--ccceeceEEEeCCC------CCcEEEEEEE
Q 009307          493 LHPKETLGYIDINLSDVV--SNKRINEKYHLIDS------KNGRIQIELQ  534 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~------~~G~I~l~~~  534 (538)
                      +++|++||++.++|+++.  .+....+||+|.+.      ..|+|+|++|
T Consensus        77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            677999999999999998  45567899999753      2599999885

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=6.8e-18  Score=144.36  Aligned_cols=118  Identities=31%  Similarity=0.545  Sum_probs=99.9

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH  339 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  339 (538)
                      |.|+|+|++|++|+..+..+.+||||++++++..   .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~   76 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP   76 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999998654   4899999999999999999998764 57899999999988899


Q ss_pred             cccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      ++||++.+++.++..+..  .|+.+....     ...+..|+|.+++.+
T Consensus        77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~~-----~~~~~~G~i~l~~~~  118 (119)
T cd08377          77 EFLGKVAIPLLSIKNGER--KWYALKDKK-----LRTRAKGSILLEMDV  118 (119)
T ss_pred             ceeeEEEEEHHHCCCCCc--eEEECcccC-----CCCceeeEEEEEEEe
Confidence            999999999999986654  455553211     124579999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.77  E-value=4.2e-18  Score=146.73  Aligned_cols=110  Identities=34%  Similarity=0.516  Sum_probs=96.1

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....+.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d   90 (124)
T cd08385          11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD   90 (124)
T ss_pred             EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence            4456789999999999999999889999999999976554567999999999999999999998642  35689999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ++..+++++||++.++++++..+.....|+++
T Consensus        91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08385          91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL  122 (124)
T ss_pred             CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence            99999999999999999999887777788775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.76  E-value=7e-18  Score=144.02  Aligned_cols=112  Identities=27%  Similarity=0.496  Sum_probs=96.9

Q ss_pred             eEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      |.|+|+|.+|++|+..   +.+||||++++++...+|+++. ++.||.|||.|.|.+... ..+.|.++|||++.    .
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~   75 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R   75 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence            6799999999999864   5799999999999888999875 478999999999999874 45689999999875    3


Q ss_pred             CCCceeEEEEEechhhcccceeceEEEeCCCC--CcEEEEEEEE
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSK--NGRIQIELQW  535 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~G~I~l~~~w  535 (538)
                      + +++||++.++++++..+....+||+|...+  .|+|+|+++|
T Consensus        76 ~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          76 K-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             C-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            4 899999999999998876778999998653  6999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=3.8e-18  Score=143.75  Aligned_cols=95  Identities=31%  Similarity=0.508  Sum_probs=84.7

Q ss_pred             eEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEEEEeccC
Q 009307          260 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ  335 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~  335 (538)
                      |+|+|+|++|++|+..+.. +.+||||++++.+......+|++++++.||+|||+|.|.+...   ....|.++|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999987 8999999999965443457999999999999999999988654   35789999999999


Q ss_pred             CCCCcccEEEEEeCccCCC
Q 009307          336 VGKHDKMGMNVVPLKELTP  354 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~  354 (538)
                      .++|++||++.+++.++..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~   99 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE   99 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc
Confidence            9999999999999999984

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.76  E-value=5.9e-18  Score=146.10  Aligned_cols=110  Identities=26%  Similarity=0.421  Sum_probs=92.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEE-eeC--CCCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v  330 (538)
                      +....+.|+|+|++|+||+..+.. |.+||||++++.+......||++++++.||+|||+|.|. +..  .....|.++|
T Consensus        11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V   90 (128)
T cd08388          11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV   90 (128)
T ss_pred             EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence            455678999999999999998876 899999999997655556799999999999999999994 432  2245799999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCC--CCeEEEEec
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDL  364 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l  364 (538)
                      ||+|..++|++||++.++|+++...  +....|+++
T Consensus        91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            9999999999999999999999765  445667765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=7.6e-18  Score=148.15  Aligned_cols=123  Identities=24%  Similarity=0.377  Sum_probs=95.9

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEee---------------CCCCC
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---------------DPESQ  324 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~---------------~~~~~  324 (538)
                      |.|+|++|+||+.  ..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+.               +....
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            7899999999998  45899999999997632  23468999999999999999999985               11235


Q ss_pred             EEEEEEEeccCCCCCcccEEEEEeCccCCCC-CCeEEEEecccccccCC-----CCCCccccEEEEEE
Q 009307          325 AVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLND-----GQNEKSRGQLVVEF  386 (538)
Q Consensus       325 ~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l  386 (538)
                      .|.+.|||++..++|++||++.+++.++..+ .....|++|.......+     ..+....|.|++.+
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            7999999999888999999999999999987 55677888754432221     12234556666654

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.76  E-value=1.1e-17  Score=143.75  Aligned_cols=115  Identities=19%  Similarity=0.319  Sum_probs=98.1

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER  449 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~  449 (538)
                      .|+|.+++.|.+                         ..+.|.|+|++|+||+..    +.+||||++++..     .++
T Consensus         1 ~G~i~~sl~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~   55 (125)
T cd04029           1 SGEILFSLSYDY-------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR   55 (125)
T ss_pred             CcEEEEEEEEEC-------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence            499999999985                         377899999999999752    5799999999952     346


Q ss_pred             EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      ||++++++.||.|||+|.|.+..... ...|.++|||++.    ++++++||++.++|+++........||+|.
T Consensus        56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            99999999999999999999865322 3479999999875    678999999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.76  E-value=1.1e-17  Score=143.18  Aligned_cols=112  Identities=29%  Similarity=0.398  Sum_probs=95.2

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC--CCCCCcEEEEEECC-----eEEEe
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG--KHHTNPYARILFRG-----EERKT  451 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT  451 (538)
                      .|+|.+++.|.                           .+.|.|.|++|++|+.  .+.+||||++++..     .+++|
T Consensus         1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT   53 (122)
T cd08381           1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT   53 (122)
T ss_pred             CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence            38999999997                           4579999999999976  35789999999963     35699


Q ss_pred             eeecCCCCCcccceEEEEe-cC-CCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307          452 KHVKKNRDPRWEEEFQFML-EE-PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL  521 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v-~~-~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  521 (538)
                      ++++++.||+|||+|.|.+ .. ......|.++|||++.    ++++++||++.++|+++..+.....||+|
T Consensus        54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999987 22 1134589999999986    57899999999999999887777899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=2.2e-17  Score=142.70  Aligned_cols=118  Identities=33%  Similarity=0.461  Sum_probs=100.2

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD  340 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  340 (538)
                      .|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            58999999999999998899999999998765334569999999999999999999998755689999999999888999


Q ss_pred             ccEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          341 KMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       341 ~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      +||++.+++.++..   +.....|+++.            ..|++++.+.+.-
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~  122 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG  122 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence            99999999988643   33566788762            2689999988864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.75  E-value=1.5e-17  Score=142.37  Aligned_cols=118  Identities=26%  Similarity=0.454  Sum_probs=98.7

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |.|+|++|++|+..+..|.+||||++.+++..  ..+|++++++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~   78 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV   78 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence            78999999999999999999999999997644  35999999999999999999998654 5799999999999999999


Q ss_pred             cEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009307          342 MGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI  387 (538)
Q Consensus       342 lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~  387 (538)
                      ||++.++++++... ...+.|++|... .    .+....|+|++.++
T Consensus        79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-~----~~~~~~G~i~l~~~  120 (121)
T cd04054          79 IGKVSLTREVISAHPRGIDGWMNLTEV-D----PDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEEcHHHhccCCCCCCcEEECeee-C----CCCccccEEEEEEE
Confidence            99999999988754 235678877431 1    23457899998864

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=2.3e-17  Score=140.32  Aligned_cols=112  Identities=21%  Similarity=0.399  Sum_probs=99.7

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      +++|+|++|++|+..   +.+||||++++++...+|++++++.||.|||.|.|.+.+. ....|.++|||++.    +++
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~   75 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK   75 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence            478999999999864   5789999999999889999999999999999999999764 45689999999985    568


Q ss_pred             CceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEEE
Q 009307          496 KETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWR  536 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w~  536 (538)
                      +++||++.++|+++..+.....||+|.+. .|+|++.++|.
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          76 DEFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             CCeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            99999999999999888888899999865 79999999874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.75  E-value=3.3e-17  Score=142.73  Aligned_cols=116  Identities=25%  Similarity=0.524  Sum_probs=101.7

Q ss_pred             CCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009307          415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG  491 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g  491 (538)
                      ...|.|+|+|++|++|+..   +.+||||++++++...+|++++++.||.|||.|.|.+.+. ..+.|.++|||++.   
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~---   87 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF---   87 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---
Confidence            4579999999999999763   5899999999999999999999999999999999999764 45689999999985   


Q ss_pred             CCCCCceeEEEEEechhhcc-----cceeceEEEeCCCCCcEEEEEEEE
Q 009307          492 LLHPKETLGYIDINLSDVVS-----NKRINEKYHLIDSKNGRIQIELQW  535 (538)
Q Consensus       492 ~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~G~I~l~~~w  535 (538)
                       ++.|++||++.+++.++..     ...+.+|.++.+...|+|+|++.+
T Consensus        88 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          88 -FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             -CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence             5678999999999999987     345667888877778999999976

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.75  E-value=2e-17  Score=144.08  Aligned_cols=116  Identities=28%  Similarity=0.482  Sum_probs=100.5

Q ss_pred             eeEEEEEEEeecCCccCCCC----------CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEE
Q 009307          259 VGILHVKVVKAMNLKKKDLL----------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVEL  328 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i  328 (538)
                      .|.|+|+|++|++|+..+..          |.+||||++.++++..  .+|++++++.||.|||+|.|.+.+  ...|.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence            58999999999999988752          5799999999986543  589999999999999999999963  578999


Q ss_pred             EEEeccCCCCCcccEEEEEeCccCCC--CCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          329 AVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       329 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      .|||++..+++++||++.++|+++..  +.....|++|.            ..|+|+++++|..
T Consensus        79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~  130 (132)
T cd04014          79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG  130 (132)
T ss_pred             EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence            99999988899999999999999987  45677888872            4699999999874

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=5.5e-18  Score=144.61  Aligned_cols=108  Identities=17%  Similarity=0.196  Sum_probs=92.0

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  329 (538)
                      +....+.|.|+|++|+||+..+..|.+||||++++.+..   ...++|++++++.||+|||+|.|.+...  ....|.++
T Consensus         9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~   88 (124)
T cd08680           9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD   88 (124)
T ss_pred             ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence            556678999999999999998888899999999997655   2467999999999999999999998643  46899999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCC-CeEEEE
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEE-PSVKTL  362 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~  362 (538)
                      |||++..+++++||++.++|.++.... ....|+
T Consensus        89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy  122 (124)
T cd08680          89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWY  122 (124)
T ss_pred             EEeCCCCCceeEEEEEEEEhhhccCCCccccccc
Confidence            999999999999999999999996543 233444

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=2.1e-17  Score=143.29  Aligned_cols=113  Identities=26%  Similarity=0.458  Sum_probs=98.5

Q ss_pred             eEEEEEEEeeecCCC-----CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          418 GLLVVIVHEAQDVEG-----KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       418 g~L~v~v~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      |.|+|+|++|++|+.     .+.+||||++.+++...+|++++++.||.|||.|.|.+.+. ..+.|.|+|||++.    
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~----   75 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR----   75 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence            689999999999975     35789999999999899999999999999999999999873 45689999999885    


Q ss_pred             CCCCceeEEEEEechhhcc---cceeceEEEeCCC-------CCcEEEEEEEE
Q 009307          493 LHPKETLGYIDINLSDVVS---NKRINEKYHLIDS-------KNGRIQIELQW  535 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~-------~~G~I~l~~~w  535 (538)
                      ++.+++||++.+++.++..   .....+||+|.+.       .+|+|+|++.|
T Consensus        76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            5678999999999999983   3446799999865       37999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.75  E-value=4.5e-17  Score=140.35  Aligned_cols=115  Identities=22%  Similarity=0.369  Sum_probs=98.2

Q ss_pred             ceEEEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      ...|+|+|++|+||+.++.+||||++.+++.. .+|++ +++.||.|||.|.|.+... ....+.|.|+|++.    +++
T Consensus         3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~   76 (126)
T cd08400           3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK   76 (126)
T ss_pred             eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence            34699999999999988889999999998755 58887 4689999999999987543 33579999999875    578


Q ss_pred             CceeEEEEEechhhcccceeceEEEeCCC------CCcEEEEEEEEEe
Q 009307          496 KETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRT  537 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l~~~w~p  537 (538)
                      +++||.+.++|+++..+...+.||+|...      ..|+|+|+++|++
T Consensus        77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            99999999999999888778899999753      2499999999986

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=2.5e-17  Score=143.94  Aligned_cols=116  Identities=26%  Similarity=0.370  Sum_probs=97.9

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----  446 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----  446 (538)
                      ....|+|.+++.|.                           .|.|.|+|++|+||...    +.+||||++++..     
T Consensus        14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~   66 (146)
T cd04028          14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI   66 (146)
T ss_pred             CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence            45789999999983                           46899999999999752    4689999999953     


Q ss_pred             eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE-cccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307          447 EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS-VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       447 ~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d-~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      .++||++++++.||+|||+|.|.+. . ....|.++||+ .+.    ++++++||.+.++|+++..+.....||+|...
T Consensus        67 ~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028          67 AKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             cceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            2569999999999999999999998 2 55689999995 443    56789999999999998666677899999864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=3.6e-17  Score=140.16  Aligned_cols=112  Identities=23%  Similarity=0.414  Sum_probs=99.0

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      |+|+|++|++|+..   +.+||||++.+++ ...+|++++++.||.|||.|.|.+.+.  .+.+.++|||++.    +++
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~~   75 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GLT   75 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CCC
Confidence            78999999999763   5799999999987 467999999999999999999998763  4689999999986    568


Q ss_pred             CceeEEEEEechhhcccceeceEEEeCCCC----CcEEEEEEEEEe
Q 009307          496 KETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRT  537 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~----~G~I~l~~~w~p  537 (538)
                      +++||++.++++++..+.....|++|.+.+    .|+|++.+.+.|
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          76 DDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             CcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            999999999999999888888999998654    599999999987

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.75  E-value=8.7e-18  Score=140.24  Aligned_cols=94  Identities=20%  Similarity=0.344  Sum_probs=82.1

Q ss_pred             eEEEEEEEeecCCccCCCC----CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307          260 GILHVKVVKAMNLKKKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE  334 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~  334 (538)
                      |+|.|+|++|++|+..+..    +.+||||++++++..   .||++++++.||+|||+|.|.+.+.. ...|.|+|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            7899999999999987632    358999999997543   58999999999999999999987543 458999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCC
Q 009307          335 QVGKHDKMGMNVVPLKELTPEE  356 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~  356 (538)
                      ..++|++||++.++|+++..+.
T Consensus        78 ~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          78 KFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999998664

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.75  E-value=9.3e-18  Score=144.51  Aligned_cols=110  Identities=25%  Similarity=0.376  Sum_probs=91.6

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  329 (538)
                      +....+.|.|+|++|+||+.++.. |.+||||++++.+..  ..++||++++++.||+|||+|.|.+...  ....|.+.
T Consensus        10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~   89 (128)
T cd08392          10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS   89 (128)
T ss_pred             EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence            445678999999999999998865 899999999997654  3356999999999999999999998643  25799999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCC---CeEEEEec
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEE---PSVKTLDL  364 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~l  364 (538)
                      |||++.++++++||++.|+|+++....   ....|++|
T Consensus        90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            999999999999999999999996543   33345543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=2.6e-17  Score=140.44  Aligned_cols=111  Identities=23%  Similarity=0.419  Sum_probs=92.7

Q ss_pred             EEEEEEEeeec---CCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc--
Q 009307          419 LLVVIVHEAQD---VEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI--  490 (538)
Q Consensus       419 ~L~v~v~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~--  490 (538)
                      .|+|+|++|++   |+.   .+.+||||++.++++..+|++++++.||+|||+|.|.+.+.  ...|.++|||++...  
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~   78 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK   78 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence            48899999999   654   36899999999999999999999999999999999999764  358999999987510  


Q ss_pred             cCCCCCceeEEEEEechhhcccceeceEEEeCCC------CCcEEEE
Q 009307          491 GLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQI  531 (538)
Q Consensus       491 g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l  531 (538)
                      +-+++|++||++.++|+++..+....+||+|.+.      +.|+|++
T Consensus        79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence            0013799999999999999988888999999843      3577764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.74  E-value=4e-17  Score=142.60  Aligned_cols=120  Identities=25%  Similarity=0.450  Sum_probs=98.3

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC---------CCCEEEEEEE
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELAVY  331 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~v~  331 (538)
                      .|+|+|++|++|+.+|..|.+||||++++++..   .+|++++++.||.|||+|.|.+...         ....|.++||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            589999999999999999999999999998654   5899999999999999999975432         1357999999


Q ss_pred             eccCCCCCcccEEEEE-eCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          332 DWEQVGKHDKMGMNVV-PLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      |++..++|++||++.+ ++..+..   ......|++|.+        .+...|+|.+++.+.+.
T Consensus        79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~  134 (135)
T cd04017          79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV  134 (135)
T ss_pred             eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence            9999999999999986 4444442   345667888743        24579999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=2.3e-17  Score=140.95  Aligned_cols=111  Identities=22%  Similarity=0.382  Sum_probs=96.3

Q ss_pred             EEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCce
Q 009307          419 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKET  498 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~  498 (538)
                      .|.|+|++|+||+.. .+||||++++++...+|++++++.||+|||.|+|.+... ....|.++|||++.    + ++++
T Consensus         1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~   73 (121)
T cd08378           1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF   73 (121)
T ss_pred             CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence            378999999999887 899999999999888999999999999999999998764 45689999999974    3 6899


Q ss_pred             eEEEEEechhhcccc-----eeceEEEeCCCC----CcEEEEEEEEE
Q 009307          499 LGYIDINLSDVVSNK-----RINEKYHLIDSK----NGRIQIELQWR  536 (538)
Q Consensus       499 lG~~~i~l~~l~~~~-----~~~~~~~L~~~~----~G~I~l~~~w~  536 (538)
                      ||++.++|+++..+.     ...+||+|.+.+    +|+|+++++|-
T Consensus        74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence            999999999987632     256899998754    59999999873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.74  E-value=1.7e-17  Score=142.84  Aligned_cols=115  Identities=23%  Similarity=0.344  Sum_probs=97.2

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER  449 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~  449 (538)
                      +|+|.+++.|.+                         ..+.|.|+|++|+||+..    +.+||||++++..     .++
T Consensus         1 ~G~i~~sl~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~   55 (125)
T cd08393           1 QGSVQFALDYDP-------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR   55 (125)
T ss_pred             CcEEEEEEEEEC-------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence            599999999985                         367899999999999763    4789999999952     346


Q ss_pred             EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +|++++++.||+|||.|.|.+.... ....|.++|||++.    ++++++||++.++|.++..+.....||+|.
T Consensus        56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            9999999999999999999986432 23489999999985    678999999999999997776778999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=3.6e-17  Score=144.69  Aligned_cols=114  Identities=25%  Similarity=0.352  Sum_probs=96.7

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH  494 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~  494 (538)
                      .|.|+|++|++|+..   +.+||||++.++++..+|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++.    ++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~   75 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN   75 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence            378999999999653   58999999999998889999876 69999999999999764 45689999999875    56


Q ss_pred             CCceeEEEEEechhhccc----ceeceEEEeCCCC-----------CcEEEEEEEEEe
Q 009307          495 PKETLGYIDINLSDVVSN----KRINEKYHLIDSK-----------NGRIQIELQWRT  537 (538)
Q Consensus       495 ~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~-----------~G~I~l~~~w~p  537 (538)
                      ++++||++.++|+++..+    ....+||+|.+.+           +|+|+|++.+-+
T Consensus        76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~  133 (150)
T cd04019          76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG  133 (150)
T ss_pred             CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence            789999999999998753    3468999998653           399999998864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=4.3e-17  Score=140.97  Aligned_cols=117  Identities=31%  Similarity=0.488  Sum_probs=99.9

Q ss_pred             EEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCCCCCcccE
Q 009307          266 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKHDKMG  343 (538)
Q Consensus       266 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~lG  343 (538)
                      |++|++|+.  ..|.+||||++++++..   ++|++++++.||+|||+|.|.+...  ..+.|.++|||++..++|++||
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence            689999998  57899999999998754   5899999999999999999999754  4689999999999999999999


Q ss_pred             EEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccC
Q 009307          344 MNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE  393 (538)
Q Consensus       344 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  393 (538)
                      ++.++++++..+.....|++|...      .+....|+|+++++|.|...
T Consensus        77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence            999999999988777888887431      12335799999999998643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.74  E-value=2.2e-17  Score=142.48  Aligned_cols=110  Identities=35%  Similarity=0.547  Sum_probs=95.0

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY  331 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~  331 (538)
                      +....+.|.|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+..   .....|.++||
T Consensus        11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~   90 (125)
T cd08386          11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL   90 (125)
T ss_pred             ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence            445678999999999999999988999999999996544445799999999999999999997532   23568999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |++..+++++||++.++++++..+.....|++|
T Consensus        91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l  123 (125)
T cd08386          91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL  123 (125)
T ss_pred             eCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence            999999999999999999999988778888876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.74  E-value=3.6e-17  Score=140.46  Aligned_cols=118  Identities=28%  Similarity=0.504  Sum_probs=95.7

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC--C
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK--H  339 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~--d  339 (538)
                      |+|+|++|++|+..+..+.+||||++++++..  .++|++++++.||.|||+|.|.+..  .+.|.++|||++..++  |
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d   77 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ   77 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence            78999999999999988999999999997532  3699999999999999999999965  6899999999998775  5


Q ss_pred             cccEEEEEeCccCCCCCC-eEEEEecccccccCCCCCCccccEEEEEE
Q 009307          340 DKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSRGQLVVEF  386 (538)
Q Consensus       340 ~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~G~l~l~l  386 (538)
                      ++||++.+++.++..... ...|+++... .+  ...+...|+|.+++
T Consensus        78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~  122 (123)
T cd08382          78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL  122 (123)
T ss_pred             ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence            799999999999876543 3556666322 11  12356789988875

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.74  E-value=2.5e-17  Score=140.80  Aligned_cols=106  Identities=25%  Similarity=0.387  Sum_probs=90.1

Q ss_pred             cccccCCCc-cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC-CC
Q 009307          245 EVPILDPSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PE  322 (538)
Q Consensus       245 ~~pi~~~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~-~~  322 (538)
                      .-|++++.. ..+...|.|+|+|++|++|+. +..+.+||||++++++.   .++|++++++.||+|||+|.|.... ..
T Consensus        12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~   87 (127)
T cd04032          12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP   87 (127)
T ss_pred             CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence            456666655 346788999999999999984 66788999999999876   3599999999999999999997533 34


Q ss_pred             CCEEEEEEEeccCCCCCcccEEEEEeCccCCC
Q 009307          323 SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP  354 (538)
Q Consensus       323 ~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~  354 (538)
                      .+.|+|+|||++..++|++||++.+++.....
T Consensus        88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032          88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence            78999999999999999999999999997663

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.73  E-value=3.1e-17  Score=139.54  Aligned_cols=102  Identities=26%  Similarity=0.373  Sum_probs=85.7

Q ss_pred             ceEEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccC
Q 009307          417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR  489 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~  489 (538)
                      .+.|.|+|++|+||+..  +.+||||++++..     .+++|++++++.||+|||+|.|.+........+.++||+++..
T Consensus        11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            57899999999999764  5789999999964     3559999999999999999999987543445799999998752


Q ss_pred             ccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307          490 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL  521 (538)
Q Consensus       490 ~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  521 (538)
                         ..++++||.+.++|.++..+....+||.|
T Consensus        91 ---~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          91 ---SRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             ---cCCCEEEEEEEecHHHhccCccccceEeC
Confidence               23578999999999999877778899986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.73  E-value=2.3e-17  Score=141.66  Aligned_cols=109  Identities=32%  Similarity=0.434  Sum_probs=95.4

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEE-eeC--CCCCEEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAVY  331 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v~  331 (538)
                      +....+.|.|+|++|+||+..+..|.+||||++.+.+....+++|+++++ .||+|||+|.|. +..  .....|.++||
T Consensus        11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~   89 (124)
T cd08389          11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY   89 (124)
T ss_pred             ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence            55667899999999999999998889999999998766556679999888 999999999998 542  23678999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |++..+++++||++.++|+++..+.....|++|
T Consensus        90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L  122 (124)
T cd08389          90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL  122 (124)
T ss_pred             ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence            999999999999999999999888888888876

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.73  E-value=4.5e-17  Score=140.22  Aligned_cols=115  Identities=20%  Similarity=0.294  Sum_probs=96.0

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER  449 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~  449 (538)
                      .|+|.+++.|.+                         ..+.|.|+|++|+||+..    +.+||||++++..     .++
T Consensus         1 ~G~i~~sl~Y~~-------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~   55 (128)
T cd08392           1 TGEIEFALHYNF-------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR   55 (128)
T ss_pred             CcEEEEEEEEeC-------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence            499999999985                         367999999999999753    5789999999953     356


Q ss_pred             EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc---ceeceEEEeC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN---KRINEKYHLI  522 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~  522 (538)
                      ||++++++.||+|||+|.|.+..... ...|.+.||+.+.    ++++++||++.|+|+++.-.   ....+||+|.
T Consensus        56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            99999999999999999999865322 3489999999875    57889999999999998543   3677999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.73  E-value=7.4e-17  Score=137.81  Aligned_cols=110  Identities=19%  Similarity=0.401  Sum_probs=96.3

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      |+|+|++|++|+..   +.+||||++++++   ...+|++++++.||+|||.|.|.+... ....|.|+|||++.    +
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~----~   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY----V   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----C
Confidence            78999999999764   5789999999963   456999999999999999999999764 44579999999875    5


Q ss_pred             CCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEE
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW  535 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w  535 (538)
                       ++++||++.++++++..+.....||+|.+.+.|++++++.+
T Consensus        77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             -CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence             78999999999999988888899999998888999988865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.73  E-value=1.8e-17  Score=140.95  Aligned_cols=105  Identities=19%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE  334 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~  334 (538)
                      ..+.|.|+|++|+||+.++ .|.+||||++++.+..  ..+++|++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4588999999999999988 7899999999998643  23568999999999999999999986432 357899999998


Q ss_pred             CCC-CCcccEEEEEeCccCCCCCCeEEEEe
Q 009307          335 QVG-KHDKMGMNVVPLKELTPEEPSVKTLD  363 (538)
Q Consensus       335 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~  363 (538)
                      ... ++++||++.+++.++..++....|+.
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~  118 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY  118 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence            775 47899999999999986665556654

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=3.4e-17  Score=136.52  Aligned_cols=98  Identities=33%  Similarity=0.526  Sum_probs=86.7

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD  340 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  340 (538)
                      .|.|+|++|++|+..+..+.+||||+++++++   .++|++++++.||.|||+|.|.+.++..+.|.|+|||++.   ++
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~   74 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK   74 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence            38899999999999888899999999999974   3589999999999999999999998777899999999985   88


Q ss_pred             ccEEEEEeCccCCCCC--CeEEEEec
Q 009307          341 KMGMNVVPLKELTPEE--PSVKTLDL  364 (538)
Q Consensus       341 ~lG~~~i~l~~l~~~~--~~~~~~~l  364 (538)
                      +||++.++|.++....  ....|++|
T Consensus        75 ~iG~~~i~l~~l~~~~~~~~~~w~~L  100 (105)
T cd04050          75 SLGSLTLPLSELLKEPDLTLDQPFPL  100 (105)
T ss_pred             ccEEEEEEHHHhhccccceeeeeEec
Confidence            9999999999988654  34677776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.72  E-value=6.7e-17  Score=139.73  Aligned_cols=114  Identities=25%  Similarity=0.423  Sum_probs=96.5

Q ss_pred             EEEEEEEeeecCCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC--CCeEEEEEEEcccCccCC
Q 009307          419 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT--NDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~--~~~l~v~V~d~~~~~g~~  493 (538)
                      .|+|+|++|++|+.   .+.+||||+++++++.++|++++++.||.|||.|.|.+.++..  ...|.++|||++.    +
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~   76 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S   76 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence            37899999999975   3579999999999999999999999999999999999976422  3479999999875    4


Q ss_pred             C-CCceeEEEEEechhhc-ccceeceEEEeCCC-----CCcEEEEEEEEE
Q 009307          494 H-PKETLGYIDINLSDVV-SNKRINEKYHLIDS-----KNGRIQIELQWR  536 (538)
Q Consensus       494 ~-~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~-----~~G~I~l~~~w~  536 (538)
                      + .+++||++.++++++. .+....+||+|...     .+|+|+|++.+.
T Consensus        77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            4 7899999999999998 44566899999754     379999999764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.72  E-value=5e-17  Score=140.65  Aligned_cols=110  Identities=30%  Similarity=0.428  Sum_probs=94.0

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....+.|+|+|++|+||+..+..+.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.+.|
T Consensus        11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v   90 (127)
T cd04030          11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV   90 (127)
T ss_pred             EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence            445678999999999999999988999999999997533  3457999999999999999999998543  357899999


Q ss_pred             EeccCC--CCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          331 YDWEQV--GKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       331 ~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ||++..  +++++||++.+++.++..++....|++|
T Consensus        91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            999875  6899999999999999877777777765

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=3.6e-17  Score=140.76  Aligned_cols=110  Identities=27%  Similarity=0.479  Sum_probs=92.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  329 (538)
                      +....+.|.|+|++|+||+..+ ..+.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.++
T Consensus         9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~   88 (123)
T cd08521           9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS   88 (123)
T ss_pred             EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence            4456789999999999999988 67899999999986432  2357899999999999999999998643  25689999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |||++..+++++||++.++++++..+.....|++|
T Consensus        89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            99999999999999999999999766666667653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.72  E-value=8.4e-17  Score=138.57  Aligned_cols=115  Identities=20%  Similarity=0.416  Sum_probs=98.6

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK  452 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~  452 (538)
                      +|+|++++.|.|                         ..|.|.|+|++|++|+..   +.+||||++++.   ....+|+
T Consensus         2 ~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~   56 (124)
T cd08387           2 RGELHFSLEYDK-------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSK   56 (124)
T ss_pred             CCEEEEEEEECC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCc
Confidence            699999999985                         367999999999999763   579999999994   2357999


Q ss_pred             eecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          453 HVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       453 v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +++++.||.|||.|.|.+.... ....|.++|||++.    ++++++||++.++|+++..+...+.||+|+
T Consensus        57 v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          57 IHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             eEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCCCcceEEECc
Confidence            9999999999999999986532 13479999999975    678999999999999998777889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.72  E-value=6.8e-17  Score=139.01  Aligned_cols=111  Identities=31%  Similarity=0.462  Sum_probs=96.0

Q ss_pred             cCCCCeeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      .++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v   87 (123)
T cd08390           8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV   87 (123)
T ss_pred             EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence            34567789999999999999988 678999999999865433456899999999999999999998643  246899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ||++..+++++||++.++|+++........|++|
T Consensus        88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L  121 (123)
T cd08390          88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL  121 (123)
T ss_pred             EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence            9999988999999999999999988888888876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.72  E-value=2.5e-16  Score=137.17  Aligned_cols=113  Identities=20%  Similarity=0.392  Sum_probs=98.0

Q ss_pred             ceEEEEEEEeeecCCCC-------------CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307          417 GGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE  482 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~  482 (538)
                      .|.|+|+|++|++|...             +.+||||++.++++. .+|++++++.||.|||.|+|.+.+   ...+.+.
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~   79 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT   79 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence            68999999999999653             258999999999866 599999999999999999999964   3689999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechhhcc--cceeceEEEeCCCCCcEEEEEEEEEeC
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKYHLIDSKNGRIQIELQWRTA  538 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~G~I~l~~~w~p~  538 (538)
                      |+|++.    ++.+++||++.++|+++..  +.....||+|.  ++|+|+|+++|+.+
T Consensus        80 v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~  131 (132)
T cd04014          80 VFHDAA----IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS  131 (132)
T ss_pred             EEeCCC----CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence            998874    5678999999999999987  45678999997  58999999999863

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.71  E-value=2.1e-16  Score=136.33  Aligned_cols=112  Identities=21%  Similarity=0.348  Sum_probs=96.9

Q ss_pred             EEEEEEeeecCCCC-CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCC
Q 009307          420 LVVIVHEAQDVEGK-HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK  496 (538)
Q Consensus       420 L~v~v~~a~~L~~~-~~~dpyv~v~~~~--~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d  496 (538)
                      |.|+|++|++|+.. +.+||||++++++  +..+|++++++.||.|||.|.|.+..  ....+.++|||++.    ++++
T Consensus         1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~   74 (126)
T cd08678           1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS   74 (126)
T ss_pred             CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence            57899999999753 5799999999974  56799999999999999999999864  34689999999986    5679


Q ss_pred             ceeEEEEEechhhcccceeceEEEeCCC------CCcEEEEEEEEEe
Q 009307          497 ETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRT  537 (538)
Q Consensus       497 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l~~~w~p  537 (538)
                      ++||++.++++++.......+||+|...      ..|+|+++++|.+
T Consensus        75 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          75 KFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME  121 (126)
T ss_pred             ceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence            9999999999999987777899999754      3799999999976

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=6.9e-17  Score=139.39  Aligned_cols=109  Identities=27%  Similarity=0.497  Sum_probs=89.4

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~  329 (538)
                      +....+.|.|+|++|+||+..+..+.+||||++++.+..  ...++|++++++.||.|||+|.|.+...   ....|.|+
T Consensus        11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~   90 (125)
T cd04031          11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT   90 (125)
T ss_pred             EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence            344568999999999999999888999999999997532  2356899999999999999999986442   35789999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |||++..+++++||++.++|++... .....|++|
T Consensus        91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L  124 (125)
T cd04031          91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL  124 (125)
T ss_pred             EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence            9999999999999999999998332 233456654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.71  E-value=4.1e-17  Score=143.87  Aligned_cols=106  Identities=35%  Similarity=0.537  Sum_probs=90.2

Q ss_pred             cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC--------------------------CeeeeeecCCCCC
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--------------------------PSKKTTVKHKNLN  307 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~~T~v~~~t~n  307 (538)
                      ....+.+.|.|+|++|+||...|..|.+||||++.+.+...                          ..++|++++++.|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            45678999999999999999999999999999999964321                          2368999999999


Q ss_pred             CeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |.|||+|.|.+.....+.|.|+|||++    +++||++.++++++.. .....|++|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999999998766789999999997    8899999999999983 334566553

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.4e-16  Score=137.59  Aligned_cols=115  Identities=29%  Similarity=0.503  Sum_probs=94.4

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC----
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV----  336 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~----  336 (538)
                      .|+|+|++|++|+..|..|.+||||++++++..   .+|++++++.||.|||+|.|.+..+ ...|.|+|||+|..    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~   77 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR   77 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence            589999999999999988999999999997543   5899999999999999999998654 57899999999852    


Q ss_pred             -------CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009307          337 -------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF  386 (538)
Q Consensus       337 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l  386 (538)
                             +.+++||++.+++.++...  ...|+.|.+..     .....+|+|.+++
T Consensus        78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~  127 (127)
T cd04027          78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI  127 (127)
T ss_pred             cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence                   4789999999999988644  34677764321     2356799998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.71  E-value=1.7e-16  Score=134.86  Aligned_cols=113  Identities=37%  Similarity=0.589  Sum_probs=97.0

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |+|+|++|++|+..+..+.+||||++++.+..  .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~   78 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL   78 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence            57999999999998888899999999997643  3699999999999999999999977657899999999999889999


Q ss_pred             cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEE
Q 009307          342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLV  383 (538)
Q Consensus       342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~  383 (538)
                      ||++.+++.++..+.....|+++..       .++...|.+.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~  113 (115)
T cd04040          79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF  113 (115)
T ss_pred             eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence            9999999999998888888888743       1344566654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.71  E-value=2.3e-16  Score=134.76  Aligned_cols=110  Identities=20%  Similarity=0.310  Sum_probs=94.6

Q ss_pred             EEEEEEeeecCCCC----CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307          420 LVVIVHEAQDVEGK----HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH  494 (538)
Q Consensus       420 L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~  494 (538)
                      |.|.|.+|+||+..    +.+||||++.++++ ..+|++++++.||.|||.|.|.+.+.  ...+.+.|||++.    ++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~   75 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR   75 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence            67899999999763    46899999999775 46999999999999999999999753  3589999999985    67


Q ss_pred             CCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEE
Q 009307          495 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW  535 (538)
Q Consensus       495 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w  535 (538)
                      ++++||.+.++++++..+...+.||+|...     .+|+|+|++.+
T Consensus        76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            899999999999999887777899999753     27999999864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=4.3e-16  Score=137.13  Aligned_cols=121  Identities=20%  Similarity=0.347  Sum_probs=96.3

Q ss_pred             EEEEEeecC--CccCCCCCCCCcEEEEEE--cCccCCeeeeeecCCCCCCeEecEEEEEeeCCC--------CCEEEEEE
Q 009307          263 HVKVVKAMN--LKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--------SQAVELAV  330 (538)
Q Consensus       263 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--------~~~L~i~v  330 (538)
                      .++|..|++  |+..+..+.+||||++++  .+....+.||+++++|+||+|||+|.|.+....        ...|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            445555555  777777789999999997  333445679999999999999999999996442        45799999


Q ss_pred             EeccCC-CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          331 YDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       331 ~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      ||++.+ ++|++||++.++|+.+........++++...       .....|+|++++....
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE  138 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence            999976 5799999999999999887666678887532       2457789999998874

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.70  E-value=2.2e-16  Score=141.75  Aligned_cols=128  Identities=23%  Similarity=0.330  Sum_probs=101.0

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~k  450 (538)
                      +|+|.+++.|.|...+..             +.......|.|.|+|++|+||+..   +.+||||++++.     ...++
T Consensus         1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k   67 (162)
T cd04020           1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK   67 (162)
T ss_pred             CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence            599999999998754321             122334689999999999999864   578999999983     24579


Q ss_pred             eeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      |++++++.||.|||.|.|.+....  .+..|.|+|||++.    ++++++||++.++++++...+...+||.+.+
T Consensus        68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999999999999999999864221  23479999999986    5779999999999999876655677777753

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=2.1e-16  Score=132.94  Aligned_cols=98  Identities=22%  Similarity=0.292  Sum_probs=85.7

Q ss_pred             eEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCc
Q 009307          418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKE  497 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~  497 (538)
                      +.|.|+|++|++|+..+..||||++.+++.+.+|++.++ .||.|||.|.|.+.+.  +..|.|+|||++.     ..|+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~DD   73 (127)
T cd08394           2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWDT   73 (127)
T ss_pred             ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCCC
Confidence            579999999999988878899999999998889999988 5999999999999763  3459999999873     4799


Q ss_pred             eeEEEEEechhhcccce--eceEEEeCC
Q 009307          498 TLGYIDINLSDVVSNKR--INEKYHLID  523 (538)
Q Consensus       498 ~lG~~~i~l~~l~~~~~--~~~~~~L~~  523 (538)
                      +||++.++|+++..+..  ..+||+|..
T Consensus        74 ~lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          74 LVGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             ceEEEEEEhHHcccCCCCCCCccEecCh
Confidence            99999999999987644  379999973

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.70  E-value=6.9e-17  Score=135.83  Aligned_cols=101  Identities=28%  Similarity=0.441  Sum_probs=86.4

Q ss_pred             EEEEEEeecCCccCCC-CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeE-ecEEEEEeeCC--CCCEEEEEEEeccCCC
Q 009307          262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRDP--ESQAVELAVYDWEQVG  337 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~v~d~~~~~  337 (538)
                      |.|+|++|++|+.++. .|.+||||++++++.   ..+|++++++.||.| ||+|.|.+...  ..+.|.|+|||++..+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence            6899999999998884 688999999999873   469999999999999 99999998754  2478999999999999


Q ss_pred             CCcccEEEEEeCccCCCC---CCeEEEEecc
Q 009307          338 KHDKMGMNVVPLKELTPE---EPSVKTLDLL  365 (538)
Q Consensus       338 ~d~~lG~~~i~l~~l~~~---~~~~~~~~l~  365 (538)
                      +|++||++.+++.++...   .....|++|.
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            999999999999999873   3345666653

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.70  E-value=8.5e-17  Score=138.55  Aligned_cols=103  Identities=33%  Similarity=0.564  Sum_probs=90.2

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCC---CCCEEEEEEEeccC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ  335 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~  335 (538)
                      |.|.|+|++|++|+..+..+.+||||++++++..   .+|++.. ++.||.|||+|.|.+..+   ..+.|.|+|||++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            6899999999999998888999999999997654   4788877 489999999999999876   35789999999999


Q ss_pred             CCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      .++|++||++.+++.++..++....|+.+.
T Consensus        78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~  107 (124)
T cd04049          78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV  107 (124)
T ss_pred             CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence            889999999999999998877777777763

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.70  E-value=2.2e-16  Score=136.04  Aligned_cols=115  Identities=21%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK  452 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~  452 (538)
                      .|+|.+++.|.+                         ..+.|.|+|++|+||+..   +.+||||++++.+   +..+|+
T Consensus         2 ~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~   56 (124)
T cd08385           2 LGKLQFSLDYDF-------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK   56 (124)
T ss_pred             ccEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence            699999999985                         367899999999999763   5789999999853   356999


Q ss_pred             eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       453 v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +++++.||+|||.|.|.+..... ...|.++|||++.    ++++++||++.++|+++..+....+|++|.
T Consensus        57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            99999999999999999865322 3589999999875    578899999999999998777788999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.70  E-value=2.2e-16  Score=136.64  Aligned_cols=117  Identities=28%  Similarity=0.425  Sum_probs=98.2

Q ss_pred             cccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEE
Q 009307          378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEER  449 (538)
Q Consensus       378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~  449 (538)
                      +.|+|.+++.|.+                         ..+.|.|+|++|+||+..   +.+||||++++.     ...+
T Consensus         1 ~~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~   55 (127)
T cd04030           1 PLGRIQLTIRYSS-------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR   55 (127)
T ss_pred             CCeEEEEEEEEeC-------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence            3699999999985                         367899999999999764   579999999995     3467


Q ss_pred             EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCC-CCCceeEEEEEechhhcccceeceEEEeC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLL-HPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +|++++++.||+|||.|.|.+.... ....|.+.|||++..   + +.+++||++.++|+++..+....+||+|.
T Consensus        56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~---~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF---LSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc---cCCCCceEEEEEEecccccccCCccceEECc
Confidence            9999999999999999999986432 235899999998751   1 57899999999999998777788999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.5e-16  Score=133.82  Aligned_cols=100  Identities=20%  Similarity=0.294  Sum_probs=83.0

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      ++.|.|+|++|++|+..+   ..||||++.+++++   .+|++.++ .||+|||+|.|.+.+. ...|.|+|||++.. .
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~   71 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-W   71 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-C
Confidence            368999999999997654   46999999998765   48888877 5999999999999775 45599999999854 9


Q ss_pred             CcccEEEEEeCccCCCCCCe--EEEEecccc
Q 009307          339 HDKMGMNVVPLKELTPEEPS--VKTLDLLKN  367 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~  367 (538)
                      ||+||++.++|+++..+...  ..|++|...
T Consensus        72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence            99999999999999866544  577777543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.70  E-value=1.1e-16  Score=137.99  Aligned_cols=115  Identities=25%  Similarity=0.387  Sum_probs=95.3

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCC----CCEEEEEEEeccC
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ  335 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~  335 (538)
                      .|+|+|++|++|+..+..+.+||||++++++..  ..+|++.. ++.||.|||+|.|.+....    ...|.++|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            489999999999998888999999999998722  25888875 6899999999999997763    6889999999998


Q ss_pred             CCCCcccEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEE
Q 009307          336 VGKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVV  384 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l  384 (538)
                      .++|++||++.+++.++..+..     ...|+.+.+.       +++..|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence            8899999999999999987654     3567766431       3677888874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=1.2e-16  Score=136.24  Aligned_cols=103  Identities=28%  Similarity=0.478  Sum_probs=90.3

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH  339 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  339 (538)
                      |.|+|+|++|++|+..+..+.+||||++++++..  ..+|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d   77 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD   77 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            7899999999999999888999999999997643  36899999999999999999998765 57999999999999999


Q ss_pred             cccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          340 DKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      ++||++.+++.++..+ ....|+.+..
T Consensus        78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          78 RSLGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence            9999999999999877 4566666644

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.69  E-value=2.7e-16  Score=131.11  Aligned_cols=98  Identities=26%  Similarity=0.537  Sum_probs=86.5

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      .|.|+|++|++|+..   +.+||||+++++++.++|++++++.||.|||.|.|.+.++ ..+.+.++|+|++.       
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~-------   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT-------   72 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence            378999999999863   5899999999999999999999999999999999999874 45689999999862       


Q ss_pred             CceeEEEEEechhhcccc--eeceEEEeCCC
Q 009307          496 KETLGYIDINLSDVVSNK--RINEKYHLIDS  524 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~  524 (538)
                      +++||++.++|.++....  ..++||+|.++
T Consensus        73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence            689999999999998754  67899999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.69  E-value=1.2e-16  Score=143.32  Aligned_cols=108  Identities=30%  Similarity=0.388  Sum_probs=92.1

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEE
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY  331 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~  331 (538)
                      ...|.|.|+|++|+||+..+..|.+||||++++.+.  ....++|++++++.||.|||+|.|.+..   .....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            468999999999999999998899999999998542  2345799999999999999999998532   23468999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |++.+++|++||++.+++.++........|+++
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~  136 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS  136 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence            999999999999999999999876666677665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.5e-16  Score=132.59  Aligned_cols=99  Identities=24%  Similarity=0.475  Sum_probs=87.2

Q ss_pred             CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc
Q 009307          434 HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN  512 (538)
Q Consensus       434 ~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~  512 (538)
                      |.+||||+++++++ ..+|++++++.||.|||.|.|.+.+. ..+.|.|+|+|++.    + ++++||++.++|+++...
T Consensus        11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~~   84 (111)
T cd04052          11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLIDA   84 (111)
T ss_pred             CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHhh
Confidence            57899999999885 46999999999999999999999874 45689999999885    5 789999999999999764


Q ss_pred             -ceeceEEEeCCCCCcEEEEEEEEEeC
Q 009307          513 -KRINEKYHLIDSKNGRIQIELQWRTA  538 (538)
Q Consensus       513 -~~~~~~~~L~~~~~G~I~l~~~w~p~  538 (538)
                       ....+||+|.+.++|+|+++++|+|+
T Consensus        85 ~~~~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          85 TSVGQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             hhccceeEECCCCCCCEEEEEEEEecC
Confidence             44679999998889999999999996

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.69  E-value=3.6e-16  Score=134.66  Aligned_cols=114  Identities=20%  Similarity=0.426  Sum_probs=96.3

Q ss_pred             eEEEEEEEeeecCCCC----CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009307          418 GLLVVIVHEAQDVEGK----HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG  491 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g  491 (538)
                      |.|+|+|++|++|+..    +.+||||++.+++  ...+|++++++.||.|||.|.|.+..  ..+.|.++|||++.   
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~---   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND---   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence            7899999999999852    3589999999988  67899999999999999999999873  45789999999985   


Q ss_pred             CCCCCceeEEEEEechhhcccceece-EEEeC--CCCCcEEEEEEEEEe
Q 009307          492 LLHPKETLGYIDINLSDVVSNKRINE-KYHLI--DSKNGRIQIELQWRT  537 (538)
Q Consensus       492 ~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~--~~~~G~I~l~~~w~p  537 (538)
                       ++++++||++.++|.++........ ++.+.  ++..|+|+++++|.|
T Consensus        77 -~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          77 -KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             -CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence             4678999999999999998765543 34443  234799999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.69  E-value=5.4e-16  Score=134.07  Aligned_cols=111  Identities=24%  Similarity=0.494  Sum_probs=97.2

Q ss_pred             EEeeecCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEE
Q 009307          424 VHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGY  501 (538)
Q Consensus       424 v~~a~~L~~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~  501 (538)
                      |.+|++|+. .+.+||||++++++..++|++++++.||+|||.|.|.+.... ....+.++|||++.    ++++++||+
T Consensus         2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence            678999987 467999999999998899999999999999999999997642 34689999999975    567899999


Q ss_pred             EEEechhhcccceeceEEEeCCCC----CcEEEEEEEEEeC
Q 009307          502 IDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRTA  538 (538)
Q Consensus       502 ~~i~l~~l~~~~~~~~~~~L~~~~----~G~I~l~~~w~p~  538 (538)
                      +.++++++..+.....|++|.+.+    +|+|+++++|.|+
T Consensus        78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP  118 (127)
T ss_pred             EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence            999999999888888999997542    6999999999985

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.69  E-value=3.2e-16  Score=135.25  Aligned_cols=114  Identities=25%  Similarity=0.437  Sum_probs=93.8

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k  450 (538)
                      .|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++.+     ..++
T Consensus         2 ~G~l~~~l~~~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k   56 (125)
T cd04031           2 TGRIQIQLWYDK-------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR   56 (125)
T ss_pred             cEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence            599999999985                         367899999999999763   5789999999964     4569


Q ss_pred             eeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      |++++++.||+|||.|.|.+....  ....|.++|||++.    ++.+++||++.++|++... ....+||+|+
T Consensus        57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~  125 (125)
T cd04031          57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADALL-DDEPHWYPLQ  125 (125)
T ss_pred             ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence            999999999999999999864421  23589999999985    5678999999999998433 3346899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.69  E-value=6.4e-17  Score=140.53  Aligned_cols=109  Identities=28%  Similarity=0.335  Sum_probs=89.0

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+..+..|.+||||++++.+..  ..+++|++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V   89 (136)
T cd08406          10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV   89 (136)
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence            445568899999999999999888999999999996532  335689999999999999999999864  3467899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      ||+|..+++++||++.++....  ++..+.|.++.
T Consensus        90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml  122 (136)
T cd08406          90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQML  122 (136)
T ss_pred             EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHH
Confidence            9999999999999999977643  33444555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.69  E-value=2.2e-16  Score=134.79  Aligned_cols=112  Identities=25%  Similarity=0.420  Sum_probs=93.0

Q ss_pred             EEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC---CCCCCcEEEEEECC------eEEEe
Q 009307          381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG------EERKT  451 (538)
Q Consensus       381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~kT  451 (538)
                      +|.+++.|.|                         ..+.|.|+|++|+||+.   .+.+||||++++..      ..++|
T Consensus         2 ~i~~sL~Y~~-------------------------~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT   56 (124)
T cd08680           2 QVQIGLRYDS-------------------------GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT   56 (124)
T ss_pred             eEEEEEEECC-------------------------CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence            5888999985                         37789999999999976   35789999999842      35699


Q ss_pred             eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc-ceeceEEEe
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHL  521 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L  521 (538)
                      ++++++.||+|||+|+|.+..... +..|.++||+.+.    ++++++||.+.++|+++... ....+||+|
T Consensus        57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999999999999999999865322 3489999999875    57899999999999999544 457789976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.69  E-value=6.4e-16  Score=138.22  Aligned_cols=113  Identities=21%  Similarity=0.421  Sum_probs=95.6

Q ss_pred             ceEEEEEEEeeecCCCC---------------------------------CCCCcEEEEEECCeE-EEeeeecCCCCCcc
Q 009307          417 GGLLVVIVHEAQDVEGK---------------------------------HHTNPYARILFRGEE-RKTKHVKKNRDPRW  462 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~---------------------------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w  462 (538)
                      -|.|.|+|++|++|+.+                                 +.+||||++.+++.+ .+|++++++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            57888999999988652                                 247999999999865 49999999999999


Q ss_pred             cceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC------CCcEEEEEEEEE
Q 009307          463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWR  536 (538)
Q Consensus       463 ~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l~~~w~  536 (538)
                      ||.|.|.+...  .+.|.++|+|++.    + ++++||++.++++++..+...++||+|.+.      +.|+|+++++|.
T Consensus        86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            99999998753  3589999999874    3 468999999999999988888999999753      258999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.68  E-value=1.9e-16  Score=138.97  Aligned_cols=93  Identities=41%  Similarity=0.693  Sum_probs=85.2

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      .|.|+|+|++|+||+..+. +.+||||+++++++.   .+|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~   75 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK   75 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence            3899999999999998887 899999999998754   5999999999999999999999877 7899999999999999


Q ss_pred             CcccEEEEEeCccCCCCC
Q 009307          339 HDKMGMNVVPLKELTPEE  356 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~~  356 (538)
                      |++||++.+++.++....
T Consensus        76 dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          76 DDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCEEEEEEEEHHHhhhhh
Confidence            999999999999988653

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.68  E-value=1.4e-16  Score=136.88  Aligned_cols=120  Identities=27%  Similarity=0.432  Sum_probs=94.7

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD  340 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  340 (538)
                      +|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            4789999999999999889999999999987653 347888889999999999999987766789999999999999999


Q ss_pred             ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      +||++.+++.+.... .++.+..+    .    ......|.++..-.+.|
T Consensus        80 ~iG~~~i~l~~~~~~-~~~~~~~~----~----~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          80 LIGETVIDLEDRFFS-KHRATCGL----P----PTYEESGPNQWRDSLKP  120 (124)
T ss_pred             eeEEEEEeecccccc-hHHHhccC----C----CcccccCceecCcccCc
Confidence            999999999987642 22222211    1    11235677776665554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.68  E-value=7.8e-16  Score=132.34  Aligned_cols=110  Identities=27%  Similarity=0.480  Sum_probs=94.8

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      +|+|+|++|++|+..   +.+||||++++++...+|++++++.||.|||.|.|.+... ....|.|+|||++.    ++.
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~   75 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK   75 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence            488999999999764   4689999999999889999999999999999999999874 35689999999875    567


Q ss_pred             CceeEEEEEechhhcccceeceEEEeCCC---------CCcEEEEEE
Q 009307          496 KETLGYIDINLSDVVSNKRINEKYHLIDS---------KNGRIQIEL  533 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~---------~~G~I~l~~  533 (538)
                      +++||++.++|+++........||.|...         ..|.|++.+
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          76 NDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             CcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            89999999999999876667899999752         258888876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.68  E-value=8.9e-17  Score=139.48  Aligned_cols=109  Identities=28%  Similarity=0.384  Sum_probs=89.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCC--CCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL  328 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i  328 (538)
                      +....+.|.|+|++|+||+..|.  .+.+||||++++.++  +..++||++++++.||+|||+|.|.+...  ....|.|
T Consensus        10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~   89 (138)
T cd08407          10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL   89 (138)
T ss_pred             EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence            44567889999999999999883  355899999999764  34467999999999999999999998643  3678999


Q ss_pred             EEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      +|||+|.++++++||++.+++..  .++..+.|.++.
T Consensus        90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml  124 (138)
T cd08407          90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML  124 (138)
T ss_pred             EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence            99999999999999999999975  344445555553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.68  E-value=1.3e-15  Score=130.19  Aligned_cols=110  Identities=25%  Similarity=0.423  Sum_probs=95.2

Q ss_pred             eEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307          418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH  494 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~  494 (538)
                      |.|.|+|++|++|+..   +.+||||++++++...+|++++++.||.|||+|.|.+.+  ..+.+.++|||++.    ++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~----~~   74 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK----DK   74 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCC----CC
Confidence            6799999999999863   578999999999888899999999999999999999865  24689999999875    46


Q ss_pred             CCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEE
Q 009307          495 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW  535 (538)
Q Consensus       495 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w  535 (538)
                      ++++||++.+++.++..+.  .+||+|.+.     ..|+|.+++++
T Consensus        75 ~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          75 KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            7899999999999987544  689999754     37999999886

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.68  E-value=1.1e-16  Score=138.79  Aligned_cols=115  Identities=20%  Similarity=0.353  Sum_probs=92.8

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC-----CCCCcEEEEEECCe-----E
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRGE-----E  448 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~-----~~~dpyv~v~~~~~-----~  448 (538)
                      .|+|.++++|.|.                         .+.|.|.|++|+||...     +.+||||++++...     +
T Consensus         1 ~Gel~~sL~Y~~~-------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k   55 (138)
T cd08407           1 TGEVLLSISYLPA-------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK   55 (138)
T ss_pred             CCEEEEEEEEeCC-------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence            4999999999974                         67899999999999764     34899999999642     4


Q ss_pred             EEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307          449 RKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      +||++++++.||+|||.|.|.+..... +..|.++|+|++.    ++++++||++.+++..  .+....+|..+..+
T Consensus        56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~  126 (138)
T cd08407          56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHT--SGTERQHWEEMLDN  126 (138)
T ss_pred             eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence            589999999999999999999976432 3479999999986    6789999999999975  23344566665544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.68  E-value=2.8e-16  Score=137.15  Aligned_cols=108  Identities=24%  Similarity=0.366  Sum_probs=92.2

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCc-cCCeeeeeecCCCCCCeEecEEEEEeeCC---------------CCCE
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQA  325 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---------------~~~~  325 (538)
                      |+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 6789999999999842 12346999999999999999999998765               4678


Q ss_pred             EEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccccccc
Q 009307          326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL  370 (538)
Q Consensus       326 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~  370 (538)
                      |.|+|||++..+++++||++.+++.++........|++|.+...+
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~  124 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP  124 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence            999999999888999999999999999877777888888665443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.68  E-value=3.2e-16  Score=136.47  Aligned_cols=100  Identities=32%  Similarity=0.529  Sum_probs=86.9

Q ss_pred             CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCC----CCCEEE
Q 009307          256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAVE  327 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~----~~~~L~  327 (538)
                      ....+.|+|+|++|++|+..+..|.+||||++++.+..    ...++|+++++|.||+|||+|.|.+...    ....|.
T Consensus        12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~   91 (133)
T cd04009          12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL   91 (133)
T ss_pred             cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence            34568899999999999999888999999999997532    2357999999999999999999998652    256899


Q ss_pred             EEEEeccCCCCCcccEEEEEeCccCCCC
Q 009307          328 LAVYDWEQVGKHDKMGMNVVPLKELTPE  355 (538)
Q Consensus       328 i~v~d~~~~~~d~~lG~~~i~l~~l~~~  355 (538)
                      ++|||++..++|++||++.++|+++..-
T Consensus        92 ~~V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          92 FTVKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            9999999999999999999999999854

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>PLN03008 Phospholipase D delta

Probab=99.67  E-value=4.4e-16  Score=165.97  Aligned_cols=130  Identities=24%  Similarity=0.457  Sum_probs=109.6

Q ss_pred             CeeEEEEEEEeecCCccCCC------------------------------------------CCCCCcEEEEEEcCccCC
Q 009307          258 PVGILHVKVVKAMNLKKKDL------------------------------------------LGASDPYVKLKITEDKLP  295 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~  295 (538)
                      .-|.|.++|.+|++|+++|.                                          .+++||||+|.+++++  
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r--   89 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT--   89 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence            45889999999999886321                                          2467999999998654  


Q ss_pred             eeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCC
Q 009307          296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQN  375 (538)
Q Consensus       296 ~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~  375 (538)
                      ..||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..++..+.|+++.....    +.
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp  163 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP  163 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence            35999999999999999999999886 468999999999986 5899999999999999999999999976432    23


Q ss_pred             CccccEEEEEEEEEeccCCC
Q 009307          376 EKSRGQLVVEFIYKPFKEED  395 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~  395 (538)
                      .+..|+|+++++|.|...+.
T Consensus       164 ~k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        164 PKAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             CCCCcEEEEEEEEEEccccc
Confidence            55678999999999987763

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.67  E-value=1.3e-15  Score=132.09  Aligned_cols=118  Identities=25%  Similarity=0.413  Sum_probs=93.3

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC----------CeeeeeecCCCCCCeE-ecEEEEEeeCCCCCEEEEE
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----------PSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA  329 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~~T~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~  329 (538)
                      +..|++++|+||+ ++..|++||||++++.+...          ..++|+++++++||+| ||+|.|.+..  ++.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence            4679999999998 67789999999999965432          2579999999999999 9999999853  5789999


Q ss_pred             EEeccCCCC---CcccEEEEEeCccCCCCCC---eEEEEecccccccCCCCCCccccEEEEEE
Q 009307          330 VYDWEQVGK---HDKMGMNVVPLKELTPEEP---SVKTLDLLKNMDLNDGQNEKSRGQLVVEF  386 (538)
Q Consensus       330 v~d~~~~~~---d~~lG~~~i~l~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~~G~l~l~l  386 (538)
                      |||++..++   +++||++.+++.++..+..   ...++.+.+..     ..+..+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence            999875443   7999999999999986632   34555553321     2467889998875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.67  E-value=6.3e-16  Score=130.79  Aligned_cols=101  Identities=22%  Similarity=0.280  Sum_probs=84.9

Q ss_pred             EEEEEEEeeecCCCC--CCCCcEEEEEECC-------eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcc
Q 009307          419 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVS  487 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~  487 (538)
                      .|+|+|++|++|+..  +.+||||++++.+       ++++|+++.++.||+|||+|+|.+....  ....|.+.|+|++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            378999999999864  6789999999842       2458999999999999999999997531  2246999999987


Q ss_pred             cCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      .    .+.+++||++.++|+++..++....|++|..
T Consensus        81 ~----~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          81 F----ARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             c----cCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            4    4678999999999999998888889999964

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.67  E-value=1.3e-16  Score=139.17  Aligned_cols=110  Identities=33%  Similarity=0.472  Sum_probs=90.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....|.|.|+|++|+||+..|..|.+||||++++.+..  ....+|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V   87 (133)
T cd08384           8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV   87 (133)
T ss_pred             EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence            445679999999999999999988999999999997532  2356999999999999999999998643  356899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      ||++..++|++||++.+++...  ++....|+++.+
T Consensus        88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~  121 (133)
T cd08384          88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLK  121 (133)
T ss_pred             EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence            9999988999999999999863  334455666543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.67  E-value=4.3e-16  Score=137.25  Aligned_cols=93  Identities=30%  Similarity=0.565  Sum_probs=81.5

Q ss_pred             EEEEEEEeecCCccCCCCC--------------CCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCE
Q 009307          261 ILHVKVVKAMNLKKKDLLG--------------ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQA  325 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~  325 (538)
                      .|.|+|++|++|+.+|..+              .+||||++.+++.+   .+|++++++.||+|||+|.|.+..+. .+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence            3789999999999988543              68999999999865   38999999999999999999975432 579


Q ss_pred             EEEEEEeccCCCCCcccEEEEEeCccCCCCC
Q 009307          326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEE  356 (538)
Q Consensus       326 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~  356 (538)
                      |.|+|||+|..++|++||++.+++.++...+
T Consensus        78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            9999999999999999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.67  E-value=7.2e-16  Score=128.67  Aligned_cols=92  Identities=12%  Similarity=0.245  Sum_probs=80.9

Q ss_pred             eEEEEEEEeeecCCCC-------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009307          418 GLLVVIVHEAQDVEGK-------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI  490 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~  490 (538)
                      |+|.|+|.+|++|+..       +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.  
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~--   78 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK--   78 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence            7899999999999763       2479999999998888999999999999999999998765444589999999986  


Q ss_pred             cCCCCCceeEEEEEechhhcccc
Q 009307          491 GLLHPKETLGYIDINLSDVVSNK  513 (538)
Q Consensus       491 g~~~~d~~lG~~~i~l~~l~~~~  513 (538)
                        +++|++||++.++|+++..+.
T Consensus        79 --~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          79 --FSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             --CCCCcceEEEEEEHHHHHhhC
Confidence              578999999999999998754

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.66  E-value=9.5e-16  Score=131.85  Aligned_cols=113  Identities=22%  Similarity=0.390  Sum_probs=95.2

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC----CCCCCcEEEEEECC-----eEEE
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRG-----EERK  450 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~k  450 (538)
                      |+|.+++.|.+                         ..+.|.|+|++|+||+.    .+.+||||++++.+     ...+
T Consensus         1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k   55 (123)
T cd08521           1 GEIEFSLSYNY-------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK   55 (123)
T ss_pred             CeEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence            88999999974                         37789999999999975    25789999999842     3469


Q ss_pred             eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL  521 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  521 (538)
                      |++++++.||+|||.|.|.+..... ...|.++|||++.    ++++++||++.++|+++..+.....||+|
T Consensus        56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEecccccccCCCccEEEC
Confidence            9999999999999999999865322 3489999999875    56789999999999999777777899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.66  E-value=1.5e-16  Score=139.37  Aligned_cols=109  Identities=29%  Similarity=0.447  Sum_probs=89.4

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v  330 (538)
                      +....|.|.|+|++|+||+..+..|.+||||++++.+  ......+|++++++.||.|||+|.|.+..  .....|.|+|
T Consensus        10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v   89 (136)
T cd08405          10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            4456789999999999999988889999999999843  33345689999999999999999999753  2356899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      ||++..+++++||++.+++.+.  +...+.|.++.
T Consensus        90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~  122 (136)
T cd08405          90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML  122 (136)
T ss_pred             EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence            9999999999999999999886  33334455543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.66  E-value=1.7e-15  Score=130.65  Aligned_cols=115  Identities=19%  Similarity=0.283  Sum_probs=96.5

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK  452 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~  452 (538)
                      .|+|++++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++.   +...+|+
T Consensus         2 ~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~   56 (125)
T cd08386           2 LGRIQFSVSYDF-------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK   56 (125)
T ss_pred             ccEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence            699999999975                         367899999999999763   578999999993   3457999


Q ss_pred             eecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          453 HVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       453 v~~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +++++.||.|||.|.|.+...  .....|.++|||++.    ++++++||++.++++++........|+.|.
T Consensus        57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            999999999999999975321  123479999999985    567899999999999998777788999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.66  E-value=1.4e-15  Score=131.24  Aligned_cols=116  Identities=20%  Similarity=0.329  Sum_probs=93.9

Q ss_pred             cccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC---eEEE
Q 009307          378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EERK  450 (538)
Q Consensus       378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~---~~~k  450 (538)
                      +.|+|.+++.|.+                         ..+.|+|+|++|+||+..    +.+||||++++..   +..|
T Consensus         1 ~~G~l~~~l~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k   55 (128)
T cd08388           1 KLGTLFFSLRYNS-------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK   55 (128)
T ss_pred             CCeEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee
Confidence            3699999999985                         367899999999999762    5689999999953   3569


Q ss_pred             eeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc--ceeceEEEeC
Q 009307          451 TKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLI  522 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~  522 (538)
                      |++++++.||.|||.|.|. +.... ....|.++|||++.    ++++++||++.++|+++.-.  ++...|.+|+
T Consensus        56 T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          56 TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            9999999999999999994 43211 22379999999875    67899999999999998554  5677787764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.66  E-value=1.1e-15  Score=134.54  Aligned_cols=106  Identities=21%  Similarity=0.357  Sum_probs=90.4

Q ss_pred             EEEEEEeeecCCCCC-----------------CCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307          420 LVVIVHEAQDVEGKH-----------------HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE  482 (538)
Q Consensus       420 L~v~v~~a~~L~~~~-----------------~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~  482 (538)
                      |.|+|++|++|+..+                 .+||||++.+++++.+|++++++.||+|||.|.|.+..++..+.|.++
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            789999999998632                 579999999999999999999999999999999998665455689999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechhhcccce-------eceEEEeCCCCCcEE
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKR-------INEKYHLIDSKNGRI  529 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~G~I  529 (538)
                      |||++.    +++|++||++.+++.++...+.       ..+|+.|.+++.+..
T Consensus        82 v~D~d~----~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~  131 (151)
T cd04018          82 IRDWDR----VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS  131 (151)
T ss_pred             EEECCC----CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence            999986    5689999999999999877542       358999988765543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.66  E-value=1.2e-15  Score=131.01  Aligned_cols=114  Identities=25%  Similarity=0.311  Sum_probs=95.4

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK  452 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~  452 (538)
                      .|+|.+++.|.+                         ..+.|.|+|++|+||+..   +..||||++.+..   ++++|+
T Consensus         2 ~G~l~~sl~Y~~-------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk   56 (124)
T cd08389           2 CGDLDVAFEYDP-------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK   56 (124)
T ss_pred             CEEEEEEEEECC-------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence            699999999985                         367899999999999863   5789999988743   356999


Q ss_pred             eecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          453 HVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       453 v~~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +.++ .||+|||+|.|. +.... .+..|.++|++++.    ++++++||++.++|+++..+.....||+|.
T Consensus        57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            8888 999999999998 54321 23479999999985    678999999999999997777788999986

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.65  E-value=7.7e-16  Score=135.43  Aligned_cols=101  Identities=26%  Similarity=0.316  Sum_probs=84.5

Q ss_pred             EEEEEEEeeecCCC-CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecC-----------C--C-CCCe
Q 009307          419 LLVVIVHEAQDVEG-KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEE-----------P--P-TNDR  478 (538)
Q Consensus       419 ~L~v~v~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~-----------~--~-~~~~  478 (538)
                      .|.|+|++|+||+. .+.+||||++++.+     ..++|++++++.||+|||.|.|.+..           +  . ....
T Consensus         1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T cd04010           1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE   80 (148)
T ss_pred             CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence            37899999999976 35799999999976     45699999999999999999999951           1  1 1237


Q ss_pred             EEEEEEEcccCccCCCCCceeEEEEEechhhccc-ceeceEEEeCC
Q 009307          479 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHLID  523 (538)
Q Consensus       479 l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~  523 (538)
                      +.|+||+++.    ++.|++||++.|+|.++... .....||+|..
T Consensus        81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEcCCC----CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            8999999875    56899999999999999876 56789999964

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.65  E-value=5.2e-16  Score=132.61  Aligned_cols=119  Identities=17%  Similarity=0.257  Sum_probs=93.0

Q ss_pred             EEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEee
Q 009307          381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTK  452 (538)
Q Consensus       381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~  452 (538)
                      +|.++++|.|.                         .|.|+|.|++|+||+..   +.+||||++++..     +++||+
T Consensus         2 el~~sL~Y~p~-------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~   56 (135)
T cd08692           2 ELQLGTCFQAV-------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTR   56 (135)
T ss_pred             eEEEEeeecCc-------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCc
Confidence            68999999974                         78999999999999874   4568999999842     356999


Q ss_pred             eecCCC-CCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307          453 HVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI  529 (538)
Q Consensus       453 v~~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I  529 (538)
                      +++++. ||+|||+|.|.+.....+-.+.|+|+|+++    ++++++||++.++.+.. .....++|.+...+++-.|
T Consensus        57 v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i  129 (135)
T cd08692          57 LVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV  129 (135)
T ss_pred             cEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence            999995 699999999999864333378899999875    57899999999999863 2223467777665544333

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.65  E-value=9.1e-16  Score=129.29  Aligned_cols=98  Identities=26%  Similarity=0.337  Sum_probs=83.7

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC----CCEEEEEEEeccC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ  335 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~  335 (538)
                      -.|+|+|++|++|+    .|.+||||++++++++   ++|++++++.||.|||+|.|.+..+.    ...|.|+|||++.
T Consensus         4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            46899999999998    4789999999999764   48999999999999999999986542    4689999999999


Q ss_pred             CCCCcccEEEEEeCccCCCCCCe---EEEEec
Q 009307          336 VGKHDKMGMNVVPLKELTPEEPS---VKTLDL  364 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~l  364 (538)
                      .++|++||++.++++++..+..+   ..|++|
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L  108 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL  108 (111)
T ss_pred             cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence            98999999999999999876443   346655

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.65  E-value=3.3e-16  Score=136.07  Aligned_cols=116  Identities=17%  Similarity=0.314  Sum_probs=93.4

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT  451 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT  451 (538)
                      |+|.++++|.|.                         .+.|.|+|++|+||+..   +.+||||++++...     ++||
T Consensus         2 G~i~~sL~Y~~~-------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT   56 (136)
T cd08406           2 GEILLSLSYLPT-------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKT   56 (136)
T ss_pred             cEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCC
Confidence            899999999863                         56899999999999763   57899999999431     4589


Q ss_pred             eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN  526 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~  526 (538)
                      ++++++.||+|||+|.|.+..... +..|.|+|+|++.    ++++++||++.++...  .+....+|..+..+++
T Consensus        57 ~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~  126 (136)
T cd08406          57 SVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLR  126 (136)
T ss_pred             ccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCC--CChhHHHHHHHHHCCC
Confidence            999999999999999999875322 3479999999985    5789999999998764  3344567777765543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.65  E-value=2.2e-15  Score=131.11  Aligned_cols=119  Identities=25%  Similarity=0.489  Sum_probs=101.3

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k  450 (538)
                      +|+|.+++.|.                           .+.|+|+|++|++|+..   +..||||++.+.+     ...+
T Consensus         1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r   53 (131)
T cd04026           1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK   53 (131)
T ss_pred             CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence            58999999886                           36899999999999853   5789999999963     4579


Q ss_pred             eeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI  529 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I  529 (538)
                      |++++++.||.|||+|.|.+........|.++|||++.    ++.+++||++.++|+++... ....||+|.+.+.|+.
T Consensus        54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence            99999999999999999998764344689999999875    56789999999999999865 5678999998888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.65  E-value=1.3e-15  Score=128.01  Aligned_cols=100  Identities=24%  Similarity=0.425  Sum_probs=86.7

Q ss_pred             EEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCcc-cceEEEEecCCCC-CCeEEEEEEEcccCccCC
Q 009307          420 LVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRW-EEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       420 L~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~  493 (538)
                      |.|+|++|++|+..    +.+||||++++++...+|++++++.||.| ||.|.|.+..... .+.|.++|||++.    +
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~   76 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y   76 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence            57999999999753    46899999999998889999999999999 9999999976432 3589999999985    5


Q ss_pred             CCCceeEEEEEechhhcc---cceeceEEEeCC
Q 009307          494 HPKETLGYIDINLSDVVS---NKRINEKYHLID  523 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~  523 (538)
                      +++++||++.+++.++..   +....+||+|.+
T Consensus        77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            788999999999999988   345889999976

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.65  E-value=7.6e-16  Score=133.17  Aligned_cols=92  Identities=27%  Similarity=0.486  Sum_probs=84.0

Q ss_pred             CceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      ..|.|+|.|.+|.||..+   +.+||||.+.+++++.+|++++++.||+|||.|+|.+.++  ...+.++|||+|.    
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~----   77 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT----   77 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence            368999999999999653   5799999999999999999999999999999999999985  4689999999997    


Q ss_pred             CCCCceeEEEEEechhhcccc
Q 009307          493 LHPKETLGYIDINLSDVVSNK  513 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~~  513 (538)
                      +++|+++|.++|+|..+++..
T Consensus        78 fs~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             CCcccccceeeeccHHHHHHh
Confidence            789999999999999988754

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.65  E-value=2.7e-15  Score=129.02  Aligned_cols=118  Identities=26%  Similarity=0.408  Sum_probs=93.8

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH  339 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  339 (538)
                      ..|.|+|.+|+ |...+..+.+||||+++++++  ...+|++++++.||.|||+|.|.+..  .+.|.|+|||++..++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~   76 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD   76 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence            46899999998 555555789999999999866  24699999999999999999999854  57999999999999999


Q ss_pred             cccEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEEEE
Q 009307          340 DKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEF  386 (538)
Q Consensus       340 ~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l  386 (538)
                      ++||++.++|.++.....     ...|+++.+..    ..+....|+|.+++
T Consensus        77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~  124 (125)
T cd04021          77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL  124 (125)
T ss_pred             cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence            999999999999886432     23466664321    11357789998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.65  E-value=8.4e-16  Score=131.45  Aligned_cols=99  Identities=28%  Similarity=0.425  Sum_probs=86.7

Q ss_pred             EEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccC----CC
Q 009307          266 VVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VG  337 (538)
Q Consensus       266 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~  337 (538)
                      .++|++|+..+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+.....+.|.++|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            4799999999988999999999998754    124699999999999999999998765556789999999997    78


Q ss_pred             CCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          338 KHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      +|++||++.++++++..+.....++.|
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l  112 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPL  112 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence            999999999999999988777778776

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.64  E-value=2.3e-16  Score=138.04  Aligned_cols=107  Identities=34%  Similarity=0.461  Sum_probs=88.4

Q ss_pred             CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEE
Q 009307          256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY  331 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  331 (538)
                      ....+.|.|+|++|+||+..|..|.+||||++++.+..  ....+|++++++.||.|||+|.|.+...  ....|.|+||
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~   90 (136)
T cd08404          11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL   90 (136)
T ss_pred             eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            34578899999999999999988999999999986432  2356899999999999999999998642  3567999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |++..+++++||++.+++..  .+.....|.++
T Consensus        91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l  121 (136)
T cd08404          91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV  121 (136)
T ss_pred             ECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence            99999999999999999998  23344455554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.64  E-value=5.2e-15  Score=128.91  Aligned_cols=118  Identities=19%  Similarity=0.296  Sum_probs=97.0

Q ss_pred             ceEEEEEEEeeecCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      ..-|.|.|.+|++|+.+  .+|||++.+++... ||+++.++.||.|+|.|.|.+...  ...+.|.|+..+...+-..+
T Consensus        10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~   85 (146)
T cd04013          10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK   85 (146)
T ss_pred             EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence            34689999999999986  48999999999885 999999999999999999976542  35799999865432110125


Q ss_pred             CceeEEEEEechhhcccceeceEEEeCCCC-------------CcEEEEEEEEEeC
Q 009307          496 KETLGYIDINLSDVVSNKRINEKYHLIDSK-------------NGRIQIELQWRTA  538 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-------------~G~I~l~~~w~p~  538 (538)
                      +++||.+.|++.++..+...++||+|.+..             .++|+++++|+++
T Consensus        86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence            789999999999999888899999997532             3799999999974

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.64  E-value=4.7e-16  Score=136.17  Aligned_cols=109  Identities=36%  Similarity=0.567  Sum_probs=89.0

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v  330 (538)
                      +....|.|.|+|++|++|+..+..|.+||||++++.+  +....++|++++++.||.|||+|.|.+....  ...|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            4556799999999999999999889999999999963  3334568999999999999999999986432  35899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      ||++.+++|++||++.+++....  .....|.++.
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~~--~~~~~W~~~~  122 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNATG--AELRHWSDML  122 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccCC--hHHHHHHHHH
Confidence            99999999999999999997642  3334455543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.64  E-value=1.7e-15  Score=130.30  Aligned_cols=108  Identities=31%  Similarity=0.490  Sum_probs=90.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~  329 (538)
                      ++...+.|+|+|++|++|+..+..+.+||||++++.+.  .....+|++++++.||.|||+|.|.....   ....+.++
T Consensus        10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~   89 (123)
T cd04035          10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL   89 (123)
T ss_pred             EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence            44456889999999999999888889999999998532  23357999999999999999999963322   25689999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEe
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD  363 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~  363 (538)
                      |||++.. .+++||++.++++++..++.+++++.
T Consensus        90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            9999988 88999999999999999888887764

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.64  E-value=4e-15  Score=129.65  Aligned_cols=126  Identities=16%  Similarity=0.241  Sum_probs=100.4

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG  337 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  337 (538)
                      -...|.|.|++|++|+.++     +|||.+.+++...  .||+++.++.||.|+|+|.|..... ...+.|.||+.+...
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~   80 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK   80 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence            4578999999999999865     8999999998764  6999999999999999999986543 578999998765422


Q ss_pred             ----CCcccEEEEEeCccCCCCCCeEEEEecccccccCC---CCCCccccEEEEEEEEEec
Q 009307          338 ----KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND---GQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       338 ----~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~~~p~  391 (538)
                          ++++||.+.||+.++..+...+.|+++........   .......+.|++++.|.+.
T Consensus        81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence                57899999999999999888899999864321110   0012445799999999975

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.64  E-value=4.5e-15  Score=126.98  Aligned_cols=109  Identities=21%  Similarity=0.381  Sum_probs=92.1

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      |.|+|++|++|+..   +.+||||++.++++. .+|++++++.||.|||.|.|.+...  ...|.++|||++.    ++.
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~----~~~   75 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT----LSR   75 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC----CCC
Confidence            78999999999763   578999999998764 5999999999999999999998652  3689999999985    578


Q ss_pred             CceeEEEEEechhhccc-ceeceEEEeCCCC-----CcEEEEEEE
Q 009307          496 KETLGYIDINLSDVVSN-KRINEKYHLIDSK-----NGRIQIELQ  534 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~-----~G~I~l~~~  534 (538)
                      |++||++.++++++... ...+.|++|.+..     .|+|+|.+.
T Consensus        76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999999999988764 3468999997532     799998864

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.64  E-value=1.2e-15  Score=133.11  Aligned_cols=110  Identities=24%  Similarity=0.395  Sum_probs=90.2

Q ss_pred             cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEE
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVEL  328 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i  328 (538)
                      .+....+.|.|+|++|+||+..+..|.+||||++++.+..   ..+++|++++++.||+|||+|.|.+..  ..+..|.|
T Consensus         9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~   88 (138)
T cd08408           9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF   88 (138)
T ss_pred             EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence            3556789999999999999999988999999999996532   235699999999999999999999874  34679999


Q ss_pred             EEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      +|||++..+++++||++.+++.....+ ..+.|..+
T Consensus        89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~  123 (138)
T cd08408          89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEM  123 (138)
T ss_pred             EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHH
Confidence            999999999999999999988755432 22345554

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.64  E-value=3.3e-15  Score=130.32  Aligned_cols=111  Identities=26%  Similarity=0.481  Sum_probs=93.5

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCe-------EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE-------ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS  488 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~  488 (538)
                      .|+|+|++|++|+..   +.+||||++++.+.       ..+|++++++.||.|||.|.|.+...  ...|.++|||++.
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~   78 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR   78 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence            378999999999764   57999999999764       46899999999999999999998652  4579999999985


Q ss_pred             CccCCCCCceeEEEEEechhhcccce------eceEEEeCCC-----CCcEEEEEEEE
Q 009307          489 RIGLLHPKETLGYIDINLSDVVSNKR------INEKYHLIDS-----KNGRIQIELQW  535 (538)
Q Consensus       489 ~~g~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~-----~~G~I~l~~~w  535 (538)
                          ++.+++||++.++++++.....      ..+||+|.+.     ..|+|++++.|
T Consensus        79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             ----CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence                5688999999999999987532      4589999843     36999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.64  E-value=1.4e-15  Score=128.04  Aligned_cols=102  Identities=25%  Similarity=0.391  Sum_probs=86.0

Q ss_pred             CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCC-
Q 009307          277 LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE-  355 (538)
Q Consensus       277 ~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~-  355 (538)
                      ..|.+||||+++++++.  .++|++++++.||.|||+|.|.+.+...+.|.|.|||++.. +|++||++.++|+++... 
T Consensus         9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            46889999999998653  35899999999999999999999876678899999999988 899999999999998643 


Q ss_pred             CCeEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          356 EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       356 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      .....|++|.          +...|+|++++.|.|.
T Consensus        86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~  111 (111)
T cd04052          86 SVGQQWFPLS----------GNGQGRIRISALWKPV  111 (111)
T ss_pred             hccceeEECC----------CCCCCEEEEEEEEecC
Confidence            3446787763          2357999999999873

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.63  E-value=1.6e-15  Score=129.68  Aligned_cols=109  Identities=17%  Similarity=0.230  Sum_probs=86.6

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCC-CCeEecEEEEEeeCCC-CCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNL-NPEWNEEYNFTVRDPE-SQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~-nP~w~e~f~f~v~~~~-~~~L~i~v  330 (538)
                      +....|.|+|+|++|+||+..+..+.+||||++++-.  .+..+++|+++++|. ||.|||+|.|.+.... .-.|.++|
T Consensus         9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v   88 (135)
T cd08692           9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL   88 (135)
T ss_pred             ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence            3446789999999999999876566779999999853  344567999999996 6999999999997543 44788999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ||++..+++++||++.++.+.... ...+.|.+.
T Consensus        89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m  121 (135)
T cd08692          89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT  121 (135)
T ss_pred             EeCCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence            999999999999999999987432 234455554

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.63  E-value=7.4e-16  Score=134.53  Aligned_cols=108  Identities=33%  Similarity=0.527  Sum_probs=87.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....|.|+|+|++|++|+..+..|.+||||++++.+.  ....++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v   88 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV   88 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            44567999999999999999998899999999998532  33457899999999999999999998542  245799999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ||++..+++++||++.+++...  +.....|.++
T Consensus        89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~  120 (134)
T cd08403          89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM  120 (134)
T ss_pred             EECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence            9999999999999999998733  3334445554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.63  E-value=1.5e-15  Score=132.61  Aligned_cols=98  Identities=27%  Similarity=0.479  Sum_probs=81.7

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....|.|.|+|++|++|+..|..|.+||||++++.+  .....++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V   88 (135)
T cd08410           9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV   88 (135)
T ss_pred             ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence            3446689999999999999999889999999999843  223457899999999999999999998542  244799999


Q ss_pred             EeccCCCCCcccEEEEEeCccC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKEL  352 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l  352 (538)
                      ||++..+++++||++.+.....
T Consensus        89 ~d~d~~~~~~~iG~~~l~~~~~  110 (135)
T cd08410          89 YGHNVKSSNDFIGRIVIGQYSS  110 (135)
T ss_pred             EeCCCCCCCcEEEEEEEcCccC
Confidence            9999999999999998765433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.63  E-value=2.8e-15  Score=126.31  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=88.2

Q ss_pred             ceEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEcccCccCC
Q 009307          417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~---~~~l~v~V~d~~~~~g~~  493 (538)
                      ...|+|+|++|++|. .+.+||||++++++++++|++++++.||.|||.|.|.+..+..   ...|.++|+|++.    +
T Consensus         3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~   77 (111)
T cd04011           3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L   77 (111)
T ss_pred             cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence            457899999999999 5789999999999999999999999999999999999865421   3579999999875    5


Q ss_pred             CCCceeEEEEEechhhccc---ceeceEEEeCC
Q 009307          494 HPKETLGYIDINLSDVVSN---KRINEKYHLID  523 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~  523 (538)
                      +++++||++.++|+++...   .-..+||+|.+
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            6789999999999999765   34689999975

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.63  E-value=8.8e-16  Score=134.20  Aligned_cols=122  Identities=19%  Similarity=0.312  Sum_probs=97.9

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEe
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKT  451 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT  451 (538)
                      .|+|.+++.|.|.                         .+.|.|+|++|+||+..  +.+||||++++..     ++++|
T Consensus         1 ~G~i~~sl~y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT   55 (137)
T cd08409           1 LGDIQISLTYNPT-------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT   55 (137)
T ss_pred             CcEEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence            4899999999863                         67899999999999753  5689999999854     25599


Q ss_pred             eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI  529 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I  529 (538)
                      ++++++.||+|||.|.|.+...+.. ..|.++|++.+.    ++++++||++.++......+....+|..+...++..|
T Consensus        56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i  130 (137)
T cd08409          56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI  130 (137)
T ss_pred             ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence            9999999999999999999653333 489999999985    5688999999999765555555677887776554433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.63  E-value=7.8e-15  Score=128.09  Aligned_cols=116  Identities=18%  Similarity=0.247  Sum_probs=93.5

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC--------CCCeEEEEEEEcc
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--------TNDRLHVEVCSVS  487 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--------~~~~l~v~V~d~~  487 (538)
                      .|+|+|++|++|+..   +.+||||++.+++...+|++++++.||.|||.|.|.+...+        ....+.++|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            589999999999763   57999999999999999999999999999999999754321        1246999999998


Q ss_pred             cCccCCCCCceeEEEEE-echhhcc---cceeceEEEeCCCC--CcEEEEEEEEEeC
Q 009307          488 SRIGLLHPKETLGYIDI-NLSDVVS---NKRINEKYHLIDSK--NGRIQIELQWRTA  538 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~--~G~I~l~~~w~p~  538 (538)
                      .    +++|++||++.+ ++..+..   .....+||+|...+  .|+|.|++++.|+
T Consensus        82 ~----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          82 S----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             C----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            5    567899999987 4433332   24567999997543  6999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.62  E-value=4.8e-15  Score=127.43  Aligned_cols=114  Identities=19%  Similarity=0.279  Sum_probs=96.1

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEEC---CeEEEee
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFR---GEERKTK  452 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~---~~~~kT~  452 (538)
                      |+|.+++.|.+                         ..+.|.|+|++|++|+..    +.+||||++++.   ....+|+
T Consensus         1 G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~   55 (123)
T cd08390           1 GRLWFSVQYDL-------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK   55 (123)
T ss_pred             CEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence            88999999985                         367899999999999753    468999999984   3456899


Q ss_pred             eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       453 v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +++++.||+|||.|.|.+..... ...|.|+|||++.    ++++++||++.++|+++........|++|.
T Consensus        56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            99999999999999999865322 2479999999875    567899999999999998877778999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.62  E-value=1.6e-15  Score=176.09  Aligned_cols=117  Identities=27%  Similarity=0.577  Sum_probs=106.5

Q ss_pred             CceEEEEEEEeeecCCCC-CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          416 GGGLLVVIVHEAQDVEGK-HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      -.|.|+|+|++|+||.+. +.+||||++.++++ ++||++++++.||.|||.|+|.+.+++..+.++++|||++.    |
T Consensus      1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred             CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence            479999999999999865 78999999999955 77999999999999999999999998767789999999985    5


Q ss_pred             CCCceeEEEEEechhhcccceeceEEEeCC--CCCcE---EEEEEEEEe
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKYHLID--SKNGR---IQIELQWRT  537 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~--~~~G~---I~l~~~w~p  537 (538)
                       +++.+|+++++|.++..++.+.+||+|.+  ++.|+   |++.++|+|
T Consensus      2054 -~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2054 -GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             -CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence             45599999999999999999999999997  56899   999999987

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.62  E-value=6.8e-15  Score=122.23  Aligned_cols=94  Identities=26%  Similarity=0.426  Sum_probs=74.3

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec------
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW------  333 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~------  333 (538)
                      |.|+|++|+||+     +.+||||++++.+..  ....+|+++++|+||+|||+|.|.+..  .+.|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence            689999999996     458999999997532  345799999999999999999999963  67999999998      


Q ss_pred             -cCCCCCcccEEEEEeCcc--CCCCCCeEEEE
Q 009307          334 -EQVGKHDKMGMNVVPLKE--LTPEEPSVKTL  362 (538)
Q Consensus       334 -~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~  362 (538)
                       |..++|+++|++.+.|+.  +.....+...+
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~  105 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVI  105 (118)
T ss_pred             ccccCcccEEEEEEEEECHHHhccCCeeEEEE
Confidence             456789999888777654  44443333333

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.61  E-value=8e-16  Score=134.48  Aligned_cols=111  Identities=24%  Similarity=0.326  Sum_probs=91.3

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+..+ .+.+||||++++.+.  ...+++|++++++.||.|||+|.|.+..  .....|.|+|
T Consensus        10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V   88 (137)
T cd08409          10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV   88 (137)
T ss_pred             ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence            3445688999999999999888 788999999998754  2245689999999999999999999863  3357899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      ||++..+++++||++.++......+...+.|.++..
T Consensus        89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            999999999999999999776665555566666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.61  E-value=1.8e-15  Score=132.38  Aligned_cols=121  Identities=20%  Similarity=0.363  Sum_probs=97.9

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k  450 (538)
                      .|+|.+++.|.|                         ..|.|.|+|++|++|+..   +.+||||++++.+     ..++
T Consensus         1 ~G~l~~~l~y~~-------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k   55 (136)
T cd08402           1 LGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK   55 (136)
T ss_pred             CcEEEEEeEEcC-------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence            489999999986                         367899999999999763   5789999999952     2458


Q ss_pred             eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI  529 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I  529 (538)
                      |++++++.||.|||.|.|.+..... ...|.++|||++.    ++++++||++.+++...  +....+|+++...++..|
T Consensus        56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~  129 (136)
T cd08402          56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI  129 (136)
T ss_pred             ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence            9999999999999999999865322 2379999999985    67889999999999764  345678888877665555


Q ss_pred             E
Q 009307          530 Q  530 (538)
Q Consensus       530 ~  530 (538)
                      .
T Consensus       130 ~  130 (136)
T cd08402         130 A  130 (136)
T ss_pred             e
Confidence            4

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.61  E-value=1.8e-14  Score=124.23  Aligned_cols=112  Identities=19%  Similarity=0.274  Sum_probs=94.3

Q ss_pred             ceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          417 GGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      .++++|+|++|++|...   +.+||||++.++++..+|++++++.||.|||.|.|.+.+.  ...|.|+|||++.    +
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~   75 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L   75 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence            46899999999999763   5799999999999999999999999999999999988763  4689999999874    3


Q ss_pred             CCCceeEEEEEechhhcccceeceEEEeCC-------CCCcEEEEEEEEEe
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKYHLID-------SKNGRIQIELQWRT  537 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~-------~~~G~I~l~~~w~p  537 (538)
                       .|++||+++++++++.  ....++|+|..       ...|+|.+++...|
T Consensus        76 -~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 -CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             -CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence             4899999999998754  34468899842       13699999988764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.61  E-value=1.3e-14  Score=127.26  Aligned_cols=90  Identities=27%  Similarity=0.516  Sum_probs=80.9

Q ss_pred             eEEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          418 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      |.|+|+|++|++|+..  +.+||||+++++++..+|++++++.||.|||.|.|.+.++  ...+.++|||++.    ++.
T Consensus         2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~   75 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK   75 (145)
T ss_pred             eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence            7899999999999753  5789999999999999999999999999999999999874  5689999999986    678


Q ss_pred             CceeEEEEEechhhcccc
Q 009307          496 KETLGYIDINLSDVVSNK  513 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~  513 (538)
                      |++||++.+++.++....
T Consensus        76 dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          76 DDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCEEEEEEEEHHHhhhhh
Confidence            999999999999987643

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.61  E-value=3e-15  Score=130.96  Aligned_cols=116  Identities=19%  Similarity=0.307  Sum_probs=94.5

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC--e---EEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--E---ERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~--~---~~k  450 (538)
                      +|+|.++++|.+                         ..+.|.|+|++|+||+..   +.+||||++++.+  +   ..+
T Consensus         1 ~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k   55 (136)
T cd08404           1 RGELLLSLCYQP-------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK   55 (136)
T ss_pred             CCeEEEEEEEeC-------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence            599999999975                         366899999999999763   5789999999843  2   458


Q ss_pred             eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                      |++++++.||.|||+|.|.+..... ...+.|+|||++.    ++++++||++.+++..  ......+|+++.+.+
T Consensus        56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~  125 (136)
T cd08404          56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPP  125 (136)
T ss_pred             CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcC--CCchHHHHHHHHhCC
Confidence            9999999999999999999864322 2468899999986    6789999999999998  344567888886653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.61  E-value=1.7e-14  Score=127.01  Aligned_cols=114  Identities=18%  Similarity=0.409  Sum_probs=90.2

Q ss_pred             EEEEEeeec--CCC---CCCCCcEEEEEE--C---CeEEEeeeecCCCCCcccceEEEEecCCC-------CCCeEEEEE
Q 009307          421 VVIVHEAQD--VEG---KHHTNPYARILF--R---GEERKTKHVKKNRDPRWEEEFQFMLEEPP-------TNDRLHVEV  483 (538)
Q Consensus       421 ~v~v~~a~~--L~~---~~~~dpyv~v~~--~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-------~~~~l~v~V  483 (538)
                      .++|..|++  ++.   .+..||||++++  .   .++.||+++++|.||+|||.|.|.+....       ....|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            345555655  554   357999999997  2   24679999999999999999999996531       134799999


Q ss_pred             EEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC---CcEEEEEEEEEe
Q 009307          484 CSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWRT  537 (538)
Q Consensus       484 ~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~---~G~I~l~~~w~p  537 (538)
                      ||++.   +++.|++||++.++|+.+..+.....|++|.++.   +|+++++++-|.
T Consensus        85 ~d~~~---f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          85 YHKGG---FLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EeCCC---cccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence            99974   2357999999999999998877778899998543   799999998775

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.60  E-value=1.9e-14  Score=122.68  Aligned_cols=106  Identities=25%  Similarity=0.543  Sum_probs=91.7

Q ss_pred             eEEEEEEEeeecCCCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      |.|+|+|++|++|+..   +.+||||+++++++ ..+|++++++.||.|||.|.|.+...  .+.|.|+|||++.    +
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~   74 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V   74 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence            6899999999999763   58999999999774 56999999999999999999998763  4689999999985    5


Q ss_pred             CCCceeEEEEEechhhcccceeceEEEeCCCCCcEEE
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ  530 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~  530 (538)
                      +.+++||++.+++.++..+ ....||.|.++..+++.
T Consensus        75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            6789999999999999887 56899999988766655

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.60  E-value=7.5e-15  Score=127.67  Aligned_cols=105  Identities=36%  Similarity=0.574  Sum_probs=90.7

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC-CCCEEEEEEEeccCC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVYDWEQV  336 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~~  336 (538)
                      +.|+|+|++|++|+..+..+.+||||++.+.+.  ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            889999999999999888889999999999742  22356999999999999999999998754 256899999999988


Q ss_pred             CCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          337 GKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      +++++||++.++++++... ....|+++.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~  120 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL  120 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence            8999999999999999865 566788874

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.59  E-value=3.2e-14  Score=122.86  Aligned_cols=111  Identities=17%  Similarity=0.288  Sum_probs=92.1

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      .++|+|.+|++|+..   +.+||||++.+++.   ..+|++++++.||.|||.|.|.+... ....|.++|||++.    
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~----   76 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF----   76 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence            588999999999763   57899999998643   46999999999999999999999874 34689999999975    


Q ss_pred             CCCCceeEEEEEechhhccc---ceeceEEEeCCCCCcEEEEEEEEE
Q 009307          493 LHPKETLGYIDINLSDVVSN---KRINEKYHLIDSKNGRIQIELQWR  536 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~G~I~l~~~w~  536 (538)
                      ++.+++||++.++|+++...   .....|++|.  ++|+|+|++.+-
T Consensus        77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--~~g~i~l~~~~~  121 (126)
T cd04043          77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--TQGRLLLRVSME  121 (126)
T ss_pred             CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--CCCeEEEEEEEe
Confidence            46789999999999887542   2456899996  389999988763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.59  E-value=3e-15  Score=131.01  Aligned_cols=117  Identities=19%  Similarity=0.374  Sum_probs=94.0

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC--C---eEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~---~~~k  450 (538)
                      +|+|.++++|.+                         ..+.|.|+|++|+||+..   +.+||||++++.  +   ...+
T Consensus         1 ~G~l~~sl~y~~-------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k   55 (136)
T cd08405           1 RGELLLSLCYNP-------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK   55 (136)
T ss_pred             CcEEEEEEEEcC-------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence            599999999985                         377899999999999753   579999999983  2   2458


Q ss_pred             eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN  526 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~  526 (538)
                      |++++++.||.|||.|.|.+..... ...|.|+|||++.    ++++++||++.+++.+.  +....+|+++...++
T Consensus        56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~  126 (136)
T cd08405          56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR  126 (136)
T ss_pred             CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence            9999999999999999999863222 3479999999975    67889999999999875  334467777765543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.59  E-value=4.5e-15  Score=129.66  Aligned_cols=120  Identities=20%  Similarity=0.357  Sum_probs=99.8

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT  451 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT  451 (538)
                      |+|.+.++|.+                         ..+.|.|+|++|+||+..   +.+||||++++.+.     ..+|
T Consensus         1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T   55 (134)
T cd00276           1 GELLLSLSYLP-------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT   55 (134)
T ss_pred             CeEEEEEEeeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence            88999999985                         367899999999999863   57899999999653     4589


Q ss_pred             eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEE
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ  530 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~  530 (538)
                      ++++++.||.|||+|.|.+..... ...|.|+|||.+.    ++++++||++.+++++  .+...++|++|.++++..|.
T Consensus        56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~  129 (134)
T cd00276          56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA  129 (134)
T ss_pred             cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence            999999999999999999876421 3589999999985    4678999999999999  55567899999887655554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.59  E-value=2.2e-14  Score=123.09  Aligned_cols=107  Identities=23%  Similarity=0.418  Sum_probs=88.3

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEEC-CeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFR-GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      |+|+|++|++|+..   +.+||||+++++ .+.++|++++++.||.|||.|.|.+..   .+.|.++|||++.    ++.
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~   74 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK   74 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence            78999999999764   578999999997 556799999999999999999999965   4689999999875    343


Q ss_pred             --CceeEEEEEechhhcccc-eeceEEEeCCCC-------CcEEEEEE
Q 009307          496 --KETLGYIDINLSDVVSNK-RINEKYHLIDSK-------NGRIQIEL  533 (538)
Q Consensus       496 --d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~-------~G~I~l~~  533 (538)
                        +++||++.++++++.... ....||+|...+       .|+|.+++
T Consensus        75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence              579999999999998654 346799995432       47777665

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.59  E-value=2.2e-15  Score=131.70  Aligned_cols=110  Identities=34%  Similarity=0.465  Sum_probs=91.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+..+..+.+||||++++.+..  ...++|++++++.||.|||+|.|.+....  ...|.|+|
T Consensus         9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v   88 (134)
T cd00276           9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV   88 (134)
T ss_pred             eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence            334568999999999999998888899999999997642  23468999999999999999999987543  57899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      ||++..+++++||++.+++++  .+.....|+++..
T Consensus        89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  122 (134)
T cd00276          89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA  122 (134)
T ss_pred             EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence            999988899999999999999  4445566776643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.58  E-value=2.9e-14  Score=123.09  Aligned_cols=111  Identities=23%  Similarity=0.448  Sum_probs=90.3

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc----
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG----  491 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g----  491 (538)
                      .|+|+|++|++|+..   +.+||||++++++...+|++++++.||.|||.|.|.+...  .+.+.++|||++....    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~   79 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK   79 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence            689999999999864   4789999999988888999999999999999999998653  3589999999874200    


Q ss_pred             --C-CCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEE
Q 009307          492 --L-LHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIEL  533 (538)
Q Consensus       492 --~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~  533 (538)
                        + .+.+++||++.+++.++..  ....||.|....     +|+|.+++
T Consensus        80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             eeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence              0 1368999999999998753  347899998532     68988864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=3e-14  Score=121.30  Aligned_cols=114  Identities=23%  Similarity=0.366  Sum_probs=87.8

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEEEeccCCCCC
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKH  339 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~d  339 (538)
                      |+|+|++|++|+..   |.+||||++++++..  .++|+++++ .||.|||+|.|.+....  ...|.+.+||.+...++
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence            78999999999976   789999999998643  358999888 99999999999987642  35688888888766666


Q ss_pred             cccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      ..+|.+.  +..+..+...+.|++|....     ......|+|++++.|
T Consensus        76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~  117 (117)
T cd08383          76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY  117 (117)
T ss_pred             eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence            6666655  55555566677888874321     124678999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.58  E-value=1.3e-14  Score=122.00  Aligned_cols=95  Identities=27%  Similarity=0.525  Sum_probs=79.5

Q ss_pred             EEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCCCCCCeEecEEEEEeeCCC----CCEEEEEEEeccCCC
Q 009307          265 KVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVG  337 (538)
Q Consensus       265 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~~  337 (538)
                      -.++|++|+..|..|.+||||++++.+..   ...++|++++++.||+|| +|.|.+....    .+.|.|+|||++..+
T Consensus         5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~   83 (110)
T cd04047           5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG   83 (110)
T ss_pred             EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence            35699999999999999999999987642   234799999999999999 7888764322    579999999999999


Q ss_pred             CCcccEEEEEeCccCCCCCCeEE
Q 009307          338 KHDKMGMNVVPLKELTPEEPSVK  360 (538)
Q Consensus       338 ~d~~lG~~~i~l~~l~~~~~~~~  360 (538)
                      +|++||++.++++++......+.
T Consensus        84 ~d~~iG~~~~~l~~l~~~~~~~~  106 (110)
T cd04047          84 KHDLIGEFETTLDELLKSSPLEF  106 (110)
T ss_pred             CCcEEEEEEEEHHHHhcCCCceE
Confidence            99999999999999986654443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.58  E-value=7.4e-15  Score=128.21  Aligned_cols=120  Identities=18%  Similarity=0.332  Sum_probs=94.6

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT  451 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT  451 (538)
                      |+|.+++.|.|                         ..+.|+|+|++|++|+..   +.+||||++++..     ..++|
T Consensus         1 g~l~~~~~y~~-------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT   55 (134)
T cd08403           1 GELMFSLCYLP-------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT   55 (134)
T ss_pred             CeEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence            88999999986                         378899999999999863   5789999999842     24589


Q ss_pred             eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEE
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ  530 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~  530 (538)
                      ++++++.||.|||.|.|.+..... ...|.++|||++.    ++++++||++.+++...  +....+|+++...++-.+.
T Consensus        56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~~~~~~~  129 (134)
T cd08403          56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNAD--GQGREHWNEMLANPRKPIA  129 (134)
T ss_pred             CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCCC--CchHHHHHHHHHCCCCeee
Confidence            999999999999999999864322 2369999999985    57899999999998732  3345678887665444433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=9.9e-16  Score=148.91  Aligned_cols=107  Identities=33%  Similarity=0.549  Sum_probs=91.5

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE  334 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~  334 (538)
                      ....|+|+|.+|+||.++|.+|.|||||++.+-+..  ..+++|++++.++||+|||+|.|.+.... ...|.++|||+|
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            456899999999999999999999999999996543  23468999999999999999999997543 678999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      +.+++||+|..++.+++|.... ...|+.++
T Consensus       258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlL  287 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLL  287 (683)
T ss_pred             ccccccccceecccHHHHhhcc-hhhHHHHh
Confidence            9999999999999999998653 34455553

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.58  E-value=4.6e-14  Score=122.23  Aligned_cols=119  Identities=29%  Similarity=0.411  Sum_probs=93.7

Q ss_pred             EEEEEEEeecCCccCC--CCCCCCcEEEEEEcCcc---CCeeeeeecCCCC-CCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307          261 ILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK---LPSKKTTVKHKNL-NPEWNEEYNFTVRDPESQAVELAVYDWE  334 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~-nP~w~e~f~f~v~~~~~~~L~i~v~d~~  334 (538)
                      .|+|+|++|+||+..+  ..+.+||||++++.+..   ....+|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  57889999999996432   2456899887766 9999999999998766678999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      .. ++++||++.++++++..+.   .++++....     .+....|.|.+.+.+
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~-----~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK-----GEPLELSTLFVHIDI  127 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC-----CCCCcceeEEEEEEE
Confidence            87 8999999999999996542   345553211     112456888888765

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.57  E-value=2.4e-14  Score=122.45  Aligned_cols=94  Identities=27%  Similarity=0.414  Sum_probs=81.1

Q ss_pred             CCceEEEEEEEeeecCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          415 AGGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      ...|.|+|+|++|++|+.  .+.+||||+++++++.++|++++++.||+|||+|.|..........|.|+|||++.    
T Consensus        25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~----  100 (127)
T cd04032          25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN----  100 (127)
T ss_pred             CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----
Confidence            356899999999999975  25789999999999989999999999999999999986443345689999999986    


Q ss_pred             CCCCceeEEEEEechhhccc
Q 009307          493 LHPKETLGYIDINLSDVVSN  512 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~  512 (538)
                      ++.|++||++.++|.....+
T Consensus       101 ~s~dd~IG~~~i~l~~~~~~  120 (127)
T cd04032         101 GWDDDLLGTCSVVPEAGVHE  120 (127)
T ss_pred             CCCCCeeEEEEEEecCCcee
Confidence            57899999999999977643

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.57  E-value=7.2e-15  Score=128.31  Aligned_cols=120  Identities=18%  Similarity=0.307  Sum_probs=94.7

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEE
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERK  450 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~k  450 (538)
                      |+|.+++.|.+                         ..+.|.|+|++|+||+..   +.+||||++++..      .++|
T Consensus         2 ~ei~~sL~Y~~-------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k   56 (138)
T cd08408           2 PELLLGLEYNA-------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK   56 (138)
T ss_pred             CeEEEEeEEcC-------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence            78999999985                         378899999999999763   5789999999952      2359


Q ss_pred             eeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI  529 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I  529 (538)
                      |++++++.||+|||+|.|.+.... ....|.++||+.+.    ++++++||++.+++...-. ....+|+.+..+++-.|
T Consensus        57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v  131 (138)
T cd08408          57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV  131 (138)
T ss_pred             ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence            999999999999999999997532 23489999999986    5789999999999875432 23357887766544333

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.57  E-value=6.2e-14  Score=120.65  Aligned_cols=104  Identities=26%  Similarity=0.479  Sum_probs=90.1

Q ss_pred             eEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCC--CCCeEEEEEEEcccCcc
Q 009307          418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIG  491 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g  491 (538)
                      |.|.|+|++|++|+..   +.+||||++++++..++|+++++ +.||.|||.|.|.+....  ....|.|+|||++.   
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~---   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN---   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence            6799999999999763   47999999999988889998875 899999999999998752  24589999999975   


Q ss_pred             CCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          492 LLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       492 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                       ++.+++||++.+++.++..++....|++|...+
T Consensus        78 -~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~  110 (124)
T cd04049          78 -FSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK  110 (124)
T ss_pred             -CCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence             567899999999999999888888999997643

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.57  E-value=3.3e-14  Score=123.80  Aligned_cols=104  Identities=21%  Similarity=0.263  Sum_probs=88.5

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-------eE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-------EE  448 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-------~~  448 (538)
                      .|+|.+++.|.+                         ..+.|+|+|++|++|+..   +.+||||++++.+       ..
T Consensus         2 ~G~l~~~l~y~~-------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~   56 (133)
T cd04009           2 YGVLTVKAYYRA-------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPT   56 (133)
T ss_pred             ceEEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccc
Confidence            699999999974                         356899999999999763   5799999999953       35


Q ss_pred             EEeeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307          449 RKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS  511 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~  511 (538)
                      ++|++++++.||+|||.|.|.+...+   ....|.++|||++.    ++++++||++.++|+++..
T Consensus        57 ~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          57 PKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             cccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCCc
Confidence            69999999999999999999987531   23589999999985    5679999999999999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.56  E-value=2.6e-14  Score=120.38  Aligned_cols=98  Identities=22%  Similarity=0.473  Sum_probs=81.7

Q ss_pred             eEEEEEEEeeecCCC---C-CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccc
Q 009307          418 GLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSS  488 (538)
Q Consensus       418 g~L~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~  488 (538)
                      |+|+|+|++|++|+.   . +.+||||++++.+   ...+|++++++.||.|||.|.|.+....  ....|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            689999999999975   2 5789999999853   3469999999999999999999886431  23589999999986


Q ss_pred             CccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          489 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       489 ~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                          ++.|++||++.++++++...   .+|+++.
T Consensus        81 ----~~~dd~lG~~~i~l~~l~~~---~~~~~~~  107 (111)
T cd04041          81 ----FTADDRLGRVEIDLKELIED---RNWMGRR  107 (111)
T ss_pred             ----CCCCCcceEEEEEHHHHhcC---CCCCccc
Confidence                57789999999999999843   3687765

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.56  E-value=1.1e-14  Score=127.12  Aligned_cols=116  Identities=21%  Similarity=0.340  Sum_probs=91.4

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT  451 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT  451 (538)
                      |+|.++++|.|                         ..|.|.|+|++|++|+..   +.+||||++++..     +.++|
T Consensus         1 G~i~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT   55 (135)
T cd08410           1 GELLLSLNYLP-------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT   55 (135)
T ss_pred             CcEEEEEEECC-------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence            88999999986                         367899999999999763   5799999999832     24699


Q ss_pred             eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                      ++++++.||.|||.|.|.+...... ..+.++|||++.    .+++++||++.++...... ....+|+.+...+
T Consensus        56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~~  125 (135)
T cd08410          56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNSQ  125 (135)
T ss_pred             ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhCC
Confidence            9999999999999999998643232 379999999985    5789999999877644322 2346788776653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.56  E-value=9.2e-15  Score=127.48  Aligned_cols=105  Identities=14%  Similarity=0.314  Sum_probs=85.3

Q ss_pred             CceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEc
Q 009307          416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSV  486 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~  486 (538)
                      ..+.|.|+|++|++|+..   +.+||||++++.+     ...+|++++++.||.|||.|.|.+..... ...|.++|||+
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~   90 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK   90 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence            378999999999999863   5789999999953     24599999999999999999999875322 34799999998


Q ss_pred             ccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN  526 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~  526 (538)
                      +.    .+++++||++.++++.  .+....+||++...++
T Consensus        91 d~----~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~  124 (133)
T cd08384          91 DI----GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD  124 (133)
T ss_pred             CC----CCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence            75    4678999999999986  3345578998876543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.55  E-value=8.2e-14  Score=118.61  Aligned_cols=109  Identities=22%  Similarity=0.350  Sum_probs=85.2

Q ss_pred             EEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCc
Q 009307          420 LVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKE  497 (538)
Q Consensus       420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~  497 (538)
                      |.|+|++|++|+..+.+||||+++++++. .+|+++++ .||.|||+|.|.+...... ..+.+.++|.+.    +..+.
T Consensus         2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence            68999999999887889999999998854 69999989 9999999999999764212 367778887763    34556


Q ss_pred             eeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307          498 TLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW  535 (538)
Q Consensus       498 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w  535 (538)
                      .+|.+.+.  .+..+...++||+|.+..     .|+|+++++|
T Consensus        77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            67766554  444466678999997632     6999999875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.54  E-value=4.8e-14  Score=121.57  Aligned_cols=108  Identities=19%  Similarity=0.329  Sum_probs=89.7

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeec-CCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCcc
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVK-KNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIG  491 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~g  491 (538)
                      |+|+|++|++|+..   +.+||||++++++ +..+|+++. ++.||.|||.|.|.+....   ....|.++|||++.   
T Consensus         2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~---   78 (125)
T cd04051           2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP---   78 (125)
T ss_pred             EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC---
Confidence            78999999999863   5799999999988 778999875 5899999999999997752   15689999999875   


Q ss_pred             CCCCCceeEEEEEechhhcccce-----eceEEEeCCC---CCcEEEE
Q 009307          492 LLHPKETLGYIDINLSDVVSNKR-----INEKYHLIDS---KNGRIQI  531 (538)
Q Consensus       492 ~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~---~~G~I~l  531 (538)
                       ++.+++||++.+++.++.....     ...||+|.+.   +.|.|++
T Consensus        79 -~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          79 -SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             -CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence             4678999999999999998654     3689999764   3687763

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.52  E-value=8.8e-14  Score=121.44  Aligned_cols=102  Identities=28%  Similarity=0.409  Sum_probs=87.5

Q ss_pred             EEEEEEeeecCCCC--CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEecCCC--------------CCCeE
Q 009307          420 LVVIVHEAQDVEGK--HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEPP--------------TNDRL  479 (538)
Q Consensus       420 L~v~v~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--------------~~~~l  479 (538)
                      |+|.|++|++|+..  +.+||||+++++    +..++|++++++.||.|||.|.|.+....              ....+
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            57899999999754  689999999998    66789999999999999999999987641              23489


Q ss_pred             EEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          480 HVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       480 ~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                      .|+|||++.    ++.+++||++.+++.++........||+|...+
T Consensus        81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          81 RVELWHASM----VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEcCCc----CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            999999985    467899999999999998877788999998653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.52  E-value=5.9e-14  Score=111.84  Aligned_cols=85  Identities=35%  Similarity=0.630  Sum_probs=76.8

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |+|+|++|+||+..+..+..||||++++.+......+|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998878899999999999865445799999999999999999999877777789999999999988999


Q ss_pred             cEEEE
Q 009307          342 MGMNV  346 (538)
Q Consensus       342 lG~~~  346 (538)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN03008 Phospholipase D delta

Probab=99.52  E-value=1.3e-13  Score=147.32  Aligned_cols=98  Identities=19%  Similarity=0.450  Sum_probs=86.2

Q ss_pred             CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc
Q 009307          434 HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN  512 (538)
Q Consensus       434 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~  512 (538)
                      +.+||||++.+++++ .||++++++.||+|||.|.|.+.++  ...|.++|+|++.    ++ ++.||++.|+++++..+
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G  147 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG  147 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence            468999999998764 4999999999999999999999874  3589999999885    54 68999999999999998


Q ss_pred             ceeceEEEeCCC------CCcEEEEEEEEEeC
Q 009307          513 KRINEKYHLIDS------KNGRIQIELQWRTA  538 (538)
Q Consensus       513 ~~~~~~~~L~~~------~~G~I~l~~~w~p~  538 (538)
                      ...+.|++|.+.      ++|+|+++++|+|+
T Consensus       148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence            888999999764      25899999999995

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.51  E-value=4.8e-14  Score=164.06  Aligned_cols=122  Identities=21%  Similarity=0.414  Sum_probs=103.5

Q ss_pred             CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307          256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE  334 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~  334 (538)
                      ....|.|.|+|++|+||.  +..|.+||||++.++++..  +||++++++.||+|||+|+|.+.++. .+.|+++|||+|
T Consensus      1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200       1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred             hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence            345799999999999998  4468999999999997543  48999999999999999999998764 467999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccE---EEEEEEEEe
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQ---LVVEFIYKP  390 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~~~p  390 (538)
                      .+++| .||.+++++.++..++....|+++.+        +++..|+   |.+++.|.+
T Consensus      2052 ~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2052 TFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             ccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence            98554 89999999999998888888888753        2345677   999998864

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.51  E-value=3.6e-13  Score=115.83  Aligned_cols=108  Identities=25%  Similarity=0.478  Sum_probs=88.5

Q ss_pred             EEEEEEEeeecCCC--CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          419 LLVVIVHEAQDVEG--KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      .|.|+|.+|+.+..  .+.+||||+++++++ ..+|++++++.||.|||.|.|.+..   .+.|.++|||++.    ++.
T Consensus         3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~   75 (125)
T cd04021           3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA   75 (125)
T ss_pred             eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence            58899999984433  246999999999887 7899999999999999999999864   3689999999986    567


Q ss_pred             CceeEEEEEechhhcccce-----eceEEEeCCCC------CcEEEEEE
Q 009307          496 KETLGYIDINLSDVVSNKR-----INEKYHLIDSK------NGRIQIEL  533 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~------~G~I~l~~  533 (538)
                      +++||++.++|+++.....     ...|++|..+.      .|++.+++
T Consensus        76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            8999999999999986431     34589986433      69888875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=1.1e-14  Score=137.58  Aligned_cols=224  Identities=23%  Similarity=0.389  Sum_probs=165.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEE--eeCC-CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT--VRDP-ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~--v~~~-~~~~L~i~  329 (538)
                      ++.....+..++.+|++|+.++.++..|||++..+.+..  ..+.+|++..+++||.|+|+-...  ..+. ....+++.
T Consensus        88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~  167 (362)
T KOG1013|consen   88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV  167 (362)
T ss_pred             hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence            445567889999999999999999999999999997632  334688899999999999775443  3322 24568899


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccccc--ccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccc
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM--DLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQ  407 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~--~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~  407 (538)
                      |.|.+.+..++++|+..+++..+...+.+.+..-|.+.+  ...+......+|++.+++.|-.                 
T Consensus       168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s-----------------  230 (362)
T KOG1013|consen  168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS-----------------  230 (362)
T ss_pred             eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence            999999999999999999999998776543322121111  1112222367888888887753                 


Q ss_pred             cCCCCCCCCceEEEEEEEeeecCCC---CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CCe
Q 009307          408 KAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDR  478 (538)
Q Consensus       408 ~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~  478 (538)
                              ...-+.|++.+|..|..   ++.+||||+.++..     .+++|.+.+.+.+|.|++.|.|.+..... ..+
T Consensus       231 --------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k  302 (362)
T KOG1013|consen  231 --------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK  302 (362)
T ss_pred             --------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence                    23446778888887754   46899999999853     23599999999999999999999876433 237


Q ss_pred             EEEEEEEcccCccCCCCCceeEEEEEech
Q 009307          479 LHVEVCSVSSRIGLLHPKETLGYIDINLS  507 (538)
Q Consensus       479 l~v~V~d~~~~~g~~~~d~~lG~~~i~l~  507 (538)
                      +.|.|||++.+    ...+.+|-....+.
T Consensus       303 v~lsvgd~~~G----~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  303 VALSVGDYDIG----KSNDSIGGSMLGGY  327 (362)
T ss_pred             EEEeecccCCC----cCccCCCccccccc
Confidence            89999999853    35677776655543

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.49  E-value=2.9e-13  Score=119.52  Aligned_cols=98  Identities=27%  Similarity=0.436  Sum_probs=83.0

Q ss_pred             CCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----------------------------EEEeeeecCCCCCc
Q 009307          414 PAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----------------------------ERKTKHVKKNRDPR  461 (538)
Q Consensus       414 ~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----------------------------~~kT~v~~~t~nP~  461 (538)
                      ....+.|.|+|++|++|...   +.+||||++.+...                             ..+|++++++.||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            34689999999999999753   67999999998531                             25899999999999


Q ss_pred             ccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307          462 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL  521 (538)
Q Consensus       462 w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  521 (538)
                      |||.|.|.+... ....|.++|||++        +++||++.++++++.. ...++||+|
T Consensus       104 WnE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             cccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999999764 3568999999885        5899999999999984 457899986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.49  E-value=3.8e-13  Score=115.53  Aligned_cols=106  Identities=21%  Similarity=0.359  Sum_probs=87.0

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k  450 (538)
                      .|+|.+++.|.+                         ..+.|+|+|++|++|+..   +.+||||++++.+     ...+
T Consensus         1 ~G~~~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r   55 (123)
T cd04035           1 LGTLEFTLLYDP-------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR   55 (123)
T ss_pred             CcEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence            489999999985                         367899999999999763   5789999999842     3569


Q ss_pred             eeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccce
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR  514 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~  514 (538)
                      |++++++.||.|||.|.|.....  .....+.++|||++.    + ++++||++.++|+++..+..
T Consensus        56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCCcc
Confidence            99999999999999999963321  123589999999975    4 68999999999999987653

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.49  E-value=3.4e-13  Score=114.45  Aligned_cols=100  Identities=27%  Similarity=0.402  Sum_probs=86.3

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      |+|+|++|++|+..   +.+||||++.+++.. .+|+++.++.||.|||.|.|.+... ....+.++|||++.    ++.
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence            57899999999763   478999999997644 6999999999999999999999764 45689999999975    567


Q ss_pred             CceeEEEEEechhhcccceeceEEEeCCC
Q 009307          496 KETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      +++||++.+++.++..+.....|++|...
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~  104 (115)
T cd04040          76 DDLLGSAYIDLSDLEPEETTELTLPLDGQ  104 (115)
T ss_pred             CCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence            89999999999999888778899999754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.48  E-value=7.1e-13  Score=115.06  Aligned_cols=111  Identities=20%  Similarity=0.351  Sum_probs=86.8

Q ss_pred             EEEEEEEeeecCCCC--CCCCcEEEEEECC-------------eEEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEEE
Q 009307          419 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------------EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHVE  482 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-------------~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~~l~v~  482 (538)
                      +..|++++|+||+..  +.+||||++++..             +.++|++++++.||+| ||.|.|.+..   .+.|.++
T Consensus         2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence            467899999999742  6899999999952             3579999999999999 9999999853   3689999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechhhcccc---eeceEEEeCCCC-----CcEEEEEE
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNK---RINEKYHLIDSK-----NGRIQIEL  533 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~-----~G~I~l~~  533 (538)
                      |||++.. +-...+++||++.+++++++...   ....||+|....     +|+|.+++
T Consensus        79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            9997532 10112789999999999998753   356789986432     58887765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=3.8e-14  Score=138.04  Aligned_cols=121  Identities=25%  Similarity=0.491  Sum_probs=101.3

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC---CCCCCcEEEEEECC-----e
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----E  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~  447 (538)
                      ...+|+|.+.+...                           ...|+|+|.+|+||-.   +|.+||||++.+-.     .
T Consensus       165 tE~RGrl~l~~~~~---------------------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s  217 (683)
T KOG0696|consen  165 TERRGRLYLEAHIK---------------------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES  217 (683)
T ss_pred             hhhcceEEEEEEec---------------------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence            45789999988663                           4579999999999955   57899999999943     3


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCc
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG  527 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G  527 (538)
                      +++|++++.++||+|||+|+|.+.....+..|.|+|||+++    .++++++|+.++.+++|+... .+.||.|.....|
T Consensus       218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEG  292 (683)
T KOG0696|consen  218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEG  292 (683)
T ss_pred             hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhhcc-hhhHHHHhhhhcC
Confidence            46999999999999999999999876556699999999997    578999999999999998754 4789998765545


Q ss_pred             E
Q 009307          528 R  528 (538)
Q Consensus       528 ~  528 (538)
                      +
T Consensus       293 E  293 (683)
T KOG0696|consen  293 E  293 (683)
T ss_pred             c
Confidence            4

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.46  E-value=1.4e-12  Score=108.43  Aligned_cols=107  Identities=21%  Similarity=0.335  Sum_probs=77.5

Q ss_pred             EEEEEEeeecCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc---c
Q 009307          420 LVVIVHEAQDVEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI---G  491 (538)
Q Consensus       420 L~v~v~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~---g  491 (538)
                      |.|+|++|++|++  .+||||+++++.     ...+|+++++|.||+|||.|+|.+..   ...+.+.|||++.+.   .
T Consensus         1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence            5799999999974  599999999963     24699999999999999999999964   358999999984110   0


Q ss_pred             CCCCCceeEEEEEech--hhcccceeceEEEeCCCCCcEEEEEEE
Q 009307          492 LLHPKETLGYIDINLS--DVVSNKRINEKYHLIDSKNGRIQIELQ  534 (538)
Q Consensus       492 ~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~L~~~~~G~I~l~~~  534 (538)
                      ..+.|+.+|++.+.|+  .+...+.....+.|.+   =+|.++++
T Consensus        76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~  117 (118)
T cd08686          76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIK  117 (118)
T ss_pred             ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEe
Confidence            1467899977777664  3444444445565542   35555554

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.43  E-value=8.1e-13  Score=113.46  Aligned_cols=88  Identities=22%  Similarity=0.363  Sum_probs=75.9

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeE--EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~--~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      +++|.|++|++|+..   +.+||||++++++..  .+|++++++.||.|||.|.|.+..+ ..+.|.++|||++.    +
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~   75 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L   75 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence            478999999999763   579999999998865  4788899999999999999998654 45689999999985    5


Q ss_pred             CCCceeEEEEEechhhcc
Q 009307          494 HPKETLGYIDINLSDVVS  511 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~  511 (538)
                      +.+++||++.++|++...
T Consensus        76 ~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          76 GSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCCceeEEEEEeeccccc
Confidence            789999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=2.2e-12  Score=132.82  Aligned_cols=135  Identities=24%  Similarity=0.327  Sum_probs=113.2

Q ss_pred             CCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe---E
Q 009307          375 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE---E  448 (538)
Q Consensus       375 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~  448 (538)
                      +....|+|.+++.|..                         ....|.|+|.+|++|+..   +.+||||++++...   +
T Consensus       149 ~~~~~G~l~fsl~Yd~-------------------------~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k  203 (421)
T KOG1028|consen  149 NVKAVGNLQFSLQYDF-------------------------ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGK  203 (421)
T ss_pred             cceeeeeEEEEEEecc-------------------------cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCc
Confidence            3567899999999984                         367899999999999874   36899999999653   4


Q ss_pred             EEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC---
Q 009307          449 RKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS---  524 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~---  524 (538)
                      .+|++.++++||+|||+|.|.+.... ....|.+.|||.++    |+++++||.+.++|..+........|.++...   
T Consensus       204 ~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~  279 (421)
T KOG1028|consen  204 FKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD  279 (421)
T ss_pred             ceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCccccccccceeeeccccccCC
Confidence            69999999999999999999976432 34589999999997    89999999999999988776666779998753   


Q ss_pred             ---CCcEEEEEEEEEeC
Q 009307          525 ---KNGRIQIELQWRTA  538 (538)
Q Consensus       525 ---~~G~I~l~~~w~p~  538 (538)
                         ..|+|.++++|.|.
T Consensus       280 ~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  280 SEELAGELLLSLCYLPT  296 (421)
T ss_pred             cccccceEEEEEEeecC
Confidence               13799999999884

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.41  E-value=5.6e-12  Score=109.10  Aligned_cols=108  Identities=23%  Similarity=0.345  Sum_probs=87.9

Q ss_pred             EEEEEEEeeecCCC-----CCCCCcEEEEEEC------CeEEEeeeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307          419 LLVVIVHEAQDVEG-----KHHTNPYARILFR------GEERKTKHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSV  486 (538)
Q Consensus       419 ~L~v~v~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~  486 (538)
                      .|+|+|++|++|+.     .+..||||++++.      ....+|++++++. ||.|||.|.|.+..+ ....|.++|+|.
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~   81 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE   81 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence            68999999999975     3478999999994      3457999988776 999999999999864 345799999998


Q ss_pred             ccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEE
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW  535 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w  535 (538)
                      +.    + ++++||++.++++++..+   .+|++|.+.     ..|+|.+.++.
T Consensus        82 ~~----~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DS----G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CC----C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            74    4 789999999999998543   368898753     25899988875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.41  E-value=1.9e-12  Score=110.64  Aligned_cols=100  Identities=19%  Similarity=0.285  Sum_probs=80.4

Q ss_pred             EEEeeecCCCC---CCCCcEEEEEECCeE-------EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          423 IVHEAQDVEGK---HHTNPYARILFRGEE-------RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       423 ~v~~a~~L~~~---~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      ..++|++|+..   +.+||||++++.+..       .+|++++++.||+|||.|.|.+... ..+.+.++|||++...+.
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~   83 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD   83 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence            34789999763   578999999997653       6999999999999999999986543 345899999999851000


Q ss_pred             CCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          493 LHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      ++++++||++.+++++++.+.....+++|..
T Consensus        84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            4578999999999999998776678999843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=1.4e-12  Score=132.32  Aligned_cols=125  Identities=26%  Similarity=0.442  Sum_probs=100.8

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE  334 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~  334 (538)
                      ..+....++++|++|.+|..+|..|++||||.+.++..+   +||+++...+||+|||.|+|..++. ++.+++.|||+|
T Consensus       290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded  365 (1283)
T KOG1011|consen  290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDED  365 (1283)
T ss_pred             ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCc
Confidence            345678899999999999999999999999999999765   4899999999999999999999886 789999999998


Q ss_pred             CC-----------CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          335 QV-----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       335 ~~-----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      +.           ..|||+|+..|.+..|...-.  .|+.+-+..+     .+...|.|++.+...-
T Consensus       366 ~dlksklrqkl~resddflgqtvievrtlsgemd--vwynlekrtd-----ksavsgairlhisvei  425 (1283)
T KOG1011|consen  366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMD--VWYNLEKRTD-----KSAVSGAIRLHISVEI  425 (1283)
T ss_pred             ccHHHHHHHHhhhcccccccceeEEEEecccchh--hhcchhhccc-----hhhccceEEEEEEEEE
Confidence            42           368999999999998876544  4554433221     2567887776665443

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.35  E-value=6.4e-12  Score=107.52  Aligned_cols=95  Identities=24%  Similarity=0.282  Sum_probs=80.4

Q ss_pred             EEEEEEeecCCccCC--CCC--CCCcEEEEEEcCccCCeeeeeecCCCCC--CeEecEEEEEeeCC--------------
Q 009307          262 LHVKVVKAMNLKKKD--LLG--ASDPYVKLKITEDKLPSKKTTVKHKNLN--PEWNEEYNFTVRDP--------------  321 (538)
Q Consensus       262 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~~~~~~~~~~~T~v~~~t~n--P~w~e~f~f~v~~~--------------  321 (538)
                      |+|.|.+|++++..+  ..|  .+||||++.+.+....+++|.|..+++|  |.||+.|.|.+.-+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999966443  356  4999999999886555679999999999  99999999887641              


Q ss_pred             ---------CCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCC
Q 009307          322 ---------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE  356 (538)
Q Consensus       322 ---------~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~  356 (538)
                               ....|.++|||.|.+++|++||++.++|+.+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     25689999999999999999999999999887653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.32  E-value=1.4e-11  Score=101.08  Aligned_cols=95  Identities=43%  Similarity=0.707  Sum_probs=82.2

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |.|+|++|++|...+..+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            68999999999987765688999999998752224689999999999999999999987657899999999998778899


Q ss_pred             cEEEEEeCccCCCCC
Q 009307          342 MGMNVVPLKELTPEE  356 (538)
Q Consensus       342 lG~~~i~l~~l~~~~  356 (538)
                      +|.+.+++.++..+.
T Consensus        82 ~G~~~~~l~~~~~~~   96 (101)
T smart00239       82 IGQVTIPLSDLLLGG   96 (101)
T ss_pred             eEEEEEEHHHcccCc
Confidence            999999999987664

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.30  E-value=9.6e-12  Score=132.61  Aligned_cols=91  Identities=25%  Similarity=0.448  Sum_probs=82.2

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH  339 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  339 (538)
                      -.++|.|++|-+|...|.+|.+|||+++.++++.. ..++..+.+|+||+|++.|++....+....+.++|||+|..+.|
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            45779999999999999999999999999998764 24778899999999999999998888788999999999999999


Q ss_pred             cccEEEEEeCcc
Q 009307          340 DKMGMNVVPLKE  351 (538)
Q Consensus       340 ~~lG~~~i~l~~  351 (538)
                      +.+|+..++|+.
T Consensus       692 ~~iget~iDLEn  703 (1105)
T KOG1326|consen  692 EKIGETTIDLEN  703 (1105)
T ss_pred             chhhceehhhhh
Confidence            999999999875

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.28  E-value=3.3e-11  Score=101.32  Aligned_cols=93  Identities=17%  Similarity=0.377  Sum_probs=72.9

Q ss_pred             EEEEeeecCCCC---CCCCcEEEEEECCe------EEEeeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccC
Q 009307          422 VIVHEAQDVEGK---HHTNPYARILFRGE------ERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSR  489 (538)
Q Consensus       422 v~v~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~  489 (538)
                      +..++|++|+..   +.+||||++++.+.      .++|++++++.||+|| .|.|.+....   ....|.++|||++. 
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~-   81 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS-   81 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence            345689999764   57999999998653      3699999999999999 6888765322   24589999999986 


Q ss_pred             ccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307          490 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL  521 (538)
Q Consensus       490 ~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  521 (538)
                         +++|++||+++++++++..+.  .++|.+
T Consensus        82 ---~~~d~~iG~~~~~l~~l~~~~--~~~~~~  108 (110)
T cd04047          82 ---SGKHDLIGEFETTLDELLKSS--PLEFEL  108 (110)
T ss_pred             ---CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence               578999999999999998543  345544

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00030 C2 C2 domain

Probab=99.28  E-value=3.4e-11  Score=98.49  Aligned_cols=99  Identities=41%  Similarity=0.637  Sum_probs=83.3

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK  341 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  341 (538)
                      |.|+|++|++|......+..+|||.+.+.+.  ...+|+++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   78 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF   78 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence            4789999999988666678999999999872  23689999999999999999999987457889999999998878899


Q ss_pred             cEEEEEeCccCC-CCCCeEEEE
Q 009307          342 MGMNVVPLKELT-PEEPSVKTL  362 (538)
Q Consensus       342 lG~~~i~l~~l~-~~~~~~~~~  362 (538)
                      +|++.+++.++. .......|+
T Consensus        79 ig~~~~~l~~l~~~~~~~~~~~  100 (102)
T cd00030          79 LGEVEIPLSELLDSGKEGELWL  100 (102)
T ss_pred             eEEEEEeHHHhhhcCCcCccee
Confidence            999999999998 444444444

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.24  E-value=4.4e-11  Score=96.14  Aligned_cols=85  Identities=18%  Similarity=0.359  Sum_probs=74.5

Q ss_pred             HHHHHhhch-hHH-HHHHHHHHHHHHHHHHh-cCCCceeeeEEEeEeeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEeC
Q 009307           75 NKFLELMWP-YLD-KAICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWAA  150 (538)
Q Consensus        75 N~~l~~~W~-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~l~~~~~~~~  150 (538)
                      |.+++|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++|+.+. .++++.+|+|+.|.|
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G   79 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG   79 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence            778888765 333 78899999999999998 68999 99999999999999999999999874 455699999999999


Q ss_pred             CCCeEEEEEE
Q 009307          151 NPNVTIGVKA  160 (538)
Q Consensus       151 ~~~i~l~~~~  160 (538)
                      +..+++++++
T Consensus        80 ~~~l~l~t~l   89 (91)
T PF10296_consen   80 GFSLTLETKL   89 (91)
T ss_pred             CeEEEEEEEE
Confidence            9999988765

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.21  E-value=5.3e-11  Score=94.61  Aligned_cols=79  Identities=34%  Similarity=0.632  Sum_probs=68.5

Q ss_pred             EEEEEEeeecCCC---CCCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          420 LVVIVHEAQDVEG---KHHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      |+|+|++|++|+.   .+..||||++.+++   ...+|++++++.+|.|+|.|.|.+... ..+.|.|+|||++.    +
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~----~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS----F   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS----S
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC----C
Confidence            6899999999987   35789999999987   668999999999999999999997765 34569999999986    4


Q ss_pred             CCCceeEEEE
Q 009307          494 HPKETLGYID  503 (538)
Q Consensus       494 ~~d~~lG~~~  503 (538)
                      +.+++||++.
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence            6699999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02270 phospholipase D alpha

Probab=99.19  E-value=2.2e-10  Score=123.01  Aligned_cols=115  Identities=17%  Similarity=0.382  Sum_probs=97.2

Q ss_pred             ceEEEEEEEeeecCCC---------------------CCCCCcEEEEEECCeEE-EeeeecCC-CCCcccceEEEEecCC
Q 009307          417 GGLLVVIVHEAQDVEG---------------------KHHTNPYARILFRGEER-KTKHVKKN-RDPRWEEEFQFMLEEP  473 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~v~~~t-~nP~w~e~f~f~v~~~  473 (538)
                      -|.|.++|++|++|+.                     ++.+||||.|.+++.+. +|+++.+. .||.|+|+|.+.|...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            5778888888888763                     13579999999998776 99999884 6999999999999874


Q ss_pred             CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC------CcEEEEEEEEEeC
Q 009307          474 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK------NGRIQIELQWRTA  538 (538)
Q Consensus       474 ~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~------~G~I~l~~~w~p~  538 (538)
                        ...+.+.|.|.+-    + ..++||.+.|+..+++.+..+++||++.+..      ..+|+++++|+|+
T Consensus        87 --~~~v~f~vkd~~~----~-g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270         87 --ASNIIFTVKDDNP----I-GATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             --cceEEEEEecCCc----c-CceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence              4689999998873    3 4569999999999999998999999997642      4699999999985

>PLN02270 phospholipase D alpha

Probab=99.18  E-value=2.4e-10  Score=122.69  Aligned_cols=129  Identities=18%  Similarity=0.329  Sum_probs=104.6

Q ss_pred             CeeEEEEEEEeecCCccCC------------------CCCCCCcEEEEEEcCccCCeeeeeecCCC-CCCeEecEEEEEe
Q 009307          258 PVGILHVKVVKAMNLKKKD------------------LLGASDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTV  318 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~w~e~f~f~v  318 (538)
                      .-|.|.|+|.+|++|++.+                  ..+.+||||.+.+++.+.  .||+++.+. .||.|+|+|.+.+
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence            3599999999999998631                  125679999999998765  799999885 6999999999999


Q ss_pred             eCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCC
Q 009307          319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE  394 (538)
Q Consensus       319 ~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~  394 (538)
                      ... ...+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++....    .+..+....|+++++|.|...+
T Consensus        84 ah~-~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         84 AHM-ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             ccC-cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence            876 5789999999998765 59999999999999998888899885431    1112233499999999997665

>PLN02223 phosphoinositide phospholipase C

Probab=99.16  E-value=1.9e-10  Score=118.69  Aligned_cols=98  Identities=30%  Similarity=0.447  Sum_probs=82.5

Q ss_pred             eeEEEEEEEeecCCcc-----CCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE
Q 009307          259 VGILHVKVVKAMNLKK-----KDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY  331 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~  331 (538)
                      ...|.|+|+.|++++.     .+.....||||+|.+.|-.  ...++|++..|+.||.|||+|.|.+..++-..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4689999999998751     1223467999999997632  23457888889999999999999999888788999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCC
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEE  356 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~  356 (538)
                      |+|..++|+|+|++.+|+..|..+-
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy  512 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI  512 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc
Confidence            9998889999999999999999885

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=5.9e-11  Score=120.70  Aligned_cols=117  Identities=22%  Similarity=0.424  Sum_probs=96.4

Q ss_pred             CCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009307          411 ENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS  487 (538)
Q Consensus       411 ~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~  487 (538)
                      ++...-++.++++|..|++|..+   |.+||||.+.++..+++|+++....||+|||.|.|.+++.  .+.|++.|||++
T Consensus       288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded  365 (1283)
T KOG1011|consen  288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDED  365 (1283)
T ss_pred             ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCc
Confidence            44455678899999999999653   7899999999999999999999999999999999999984  468999999987


Q ss_pred             cCccCC----------CCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEE
Q 009307          488 SRIGLL----------HPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQ  534 (538)
Q Consensus       488 ~~~g~~----------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~  534 (538)
                      .+   +          ..|++||+..|.+..+-  +.++-||+|....     +|-|++.+.
T Consensus       366 ~d---lksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis  422 (1283)
T KOG1011|consen  366 ND---LKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS  422 (1283)
T ss_pred             cc---HHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence            53   2          35899999999987763  4668899997531     677776553

>PLN02952 phosphoinositide phospholipase C

Probab=99.08  E-value=1.5e-09  Score=114.52  Aligned_cols=104  Identities=29%  Similarity=0.424  Sum_probs=84.4

Q ss_pred             eeEEEEEEEeecCCccC------CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEE
Q 009307          259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV  330 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v  330 (538)
                      ...|.|+|+.|.+++..      +.....||||+|.+-+-.  ..+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999987531      112345999999986532  2346899999999999999999999988777899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      ||+|..+.++++|++.+|+..|..+..   +++|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~  580 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH  580 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence            999988899999999999999998853   55553

>cd00030 C2 C2 domain

Probab=99.07  E-value=1.7e-09  Score=88.30  Aligned_cols=97  Identities=33%  Similarity=0.542  Sum_probs=81.3

Q ss_pred             EEEEEEeeecCCC---CCCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          420 LVVIVHEAQDVEG---KHHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      |.|.|++|+++..   ....+|||.+.+.+ ...+|+++.++.||.|++.|.|.+... ....+.++|++.+.    ...
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence            4688999999975   35799999999998 778999999999999999999999863 34689999999875    345


Q ss_pred             CceeEEEEEechhhc-ccceeceEEEe
Q 009307          496 KETLGYIDINLSDVV-SNKRINEKYHL  521 (538)
Q Consensus       496 d~~lG~~~i~l~~l~-~~~~~~~~~~L  521 (538)
                      +.++|++.+++.++. .......|++|
T Consensus        76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          76 DDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             CceeEEEEEeHHHhhhcCCcCcceecC
Confidence            789999999999998 55555677764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.06  E-value=8.3e-10  Score=94.56  Aligned_cols=90  Identities=23%  Similarity=0.379  Sum_probs=75.2

Q ss_pred             EEEEEEeeecCCC-----CC--CCCcEEEEEECC---eEEEeeeecCCCC--CcccceEEEEecCCCC------------
Q 009307          420 LVVIVHEAQDVEG-----KH--HTNPYARILFRG---EERKTKHVKKNRD--PRWEEEFQFMLEEPPT------------  475 (538)
Q Consensus       420 L~v~v~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~v~~~t~n--P~w~e~f~f~v~~~~~------------  475 (538)
                      |+|.|.+|++++.     .+  .+||||++.+.+   ++++|.+.+++.|  |.||+.|.|++..++.            
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            7899999999653     23  499999999976   3569999999999  9999999998876322            


Q ss_pred             ----------CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccc
Q 009307          476 ----------NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK  513 (538)
Q Consensus       476 ----------~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~  513 (538)
                                ...|.++|||++.    ++.|++||.++++|..+....
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence                      2479999999986    788999999999999987754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.06  E-value=7.8e-11  Score=125.82  Aligned_cols=85  Identities=22%  Similarity=0.360  Sum_probs=74.2

Q ss_pred             EEEEEEEeeecCCC---CCCCCcEEEEEECCeEE--EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          419 LLVVIVHEAQDVEG---KHHTNPYARILFRGEER--KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~--kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      .++|++.+|.+|..   ++..|||+++.++++..  +...+.+|.||+|++.|++.+..+ ....+.++|||++.    +
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~----~  688 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL----E  688 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec----c
Confidence            46799999999965   46899999999998874  778899999999999999998875 66689999999986    6


Q ss_pred             CCCceeEEEEEechh
Q 009307          494 HPKETLGYIDINLSD  508 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~  508 (538)
                      ++|+.+|+.+++|++
T Consensus       689 ~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  689 AQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccchhhceehhhhh
Confidence            789999999999975

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.04  E-value=2.5e-09  Score=87.51  Aligned_cols=89  Identities=29%  Similarity=0.562  Sum_probs=76.4

Q ss_pred             EEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          420 LVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      +.+.|++|++|...   +..+|||++++.+.   ..+|+.+.++.||.|||.|.|.+.... ...|.++||+++.    .
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~----~   76 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR----F   76 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC----c
Confidence            67899999999764   36899999999875   689999999999999999999998753 6789999999975    3


Q ss_pred             CCCceeEEEEEechhhcccc
Q 009307          494 HPKETLGYIDINLSDVVSNK  513 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~  513 (538)
                      +.+..+|.+.+++.++..+.
T Consensus        77 ~~~~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       77 GRDDFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             cCCceeEEEEEEHHHcccCc
Confidence            46899999999999987654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.01  E-value=1.7e-10  Score=119.04  Aligned_cols=134  Identities=27%  Similarity=0.507  Sum_probs=104.6

Q ss_pred             ccCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc-------------------------C---CeeeeeecCC
Q 009307          253 KAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-------------------------L---PSKKTTVKHK  304 (538)
Q Consensus       253 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-------------------------~---~~~~T~v~~~  304 (538)
                      +..+.|.-.+.|.+.+|+||.++|.+|.+|||+...+.+..                         .   -.+-|++++.
T Consensus       107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~  186 (1103)
T KOG1328|consen  107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK  186 (1103)
T ss_pred             cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence            34556777788999999999999999999999998873210                         0   0135889999


Q ss_pred             CCCCeEecEEEEEeeCCCCCEEEEEEEeccCC---------------------------------C---CCcccEEEEEe
Q 009307          305 NLNPEWNEEYNFTVRDPESQAVELAVYDWEQV---------------------------------G---KHDKMGMNVVP  348 (538)
Q Consensus       305 t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~---~d~~lG~~~i~  348 (538)
                      |+||+|+|.|.|.+.+..++.+.+.+||+|+-                                 +   .|||+|++.+|
T Consensus       187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip  266 (1103)
T KOG1328|consen  187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP  266 (1103)
T ss_pred             cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence            99999999999999999899999999999732                                 1   38999999999


Q ss_pred             CccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307          349 LKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK  392 (538)
Q Consensus       349 l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (538)
                      +.++... +.+.|+.|....     ..++..|.+++.+......
T Consensus       267 l~EiP~~-Gld~WFkLepRS-----~~S~VqG~~~LklwLsT~e  304 (1103)
T KOG1328|consen  267 LAEIPPD-GLDQWFKLEPRS-----DKSKVQGQVKLKLWLSTKE  304 (1103)
T ss_pred             hhcCCcc-hHHHHhccCccc-----ccccccceEEEEEEEeeec
Confidence            9999875 344555553322     2367899999999776543

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.97  E-value=2.3e-09  Score=112.90  Aligned_cols=99  Identities=23%  Similarity=0.321  Sum_probs=82.3

Q ss_pred             eeEEEEEEEeecCCccC------CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEE
Q 009307          259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV  330 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v  330 (538)
                      ..+|.|+|+.+.+++..      +.....||||+|.+-+-.  ...++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987421      222356999999996522  2245889999999999999999999988888999999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEP  357 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~  357 (538)
                      +|+|...+|+|+|+..+|+..|..+-.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR  574 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH  574 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc
Confidence            999988899999999999999998754

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.95  E-value=2.5e-09  Score=110.75  Aligned_cols=112  Identities=22%  Similarity=0.300  Sum_probs=97.9

Q ss_pred             EEEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307          419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH  494 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~  494 (538)
                      -|.|.|.+|+||+..   |..||||.|.+..+. .+|.++.+++.|.|.|.|.|.++..  -..+.+-|||++     ++
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~--F~~l~fYv~D~d-----~~   78 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT--FRYLSFYVWDRD-----LK   78 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc--eeeEEEEEeccc-----cc
Confidence            478999999999874   578999999998765 5999999999999999999999763  358999999998     67


Q ss_pred             CCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEEe
Q 009307          495 PKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT  537 (538)
Q Consensus       495 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~p  537 (538)
                      +|+.||.+.|.=.++......+.||.|....     +|+|++++++.+
T Consensus        79 ~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e  126 (800)
T KOG2059|consen   79 RDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE  126 (800)
T ss_pred             cccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence            9999999999999998877788999997532     799999998865

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.91  E-value=7.4e-09  Score=109.11  Aligned_cols=98  Identities=29%  Similarity=0.469  Sum_probs=82.2

Q ss_pred             EEEEEEEeecCCccCCC----CCCCCcEEEEEEcCcc--CCeeeee-ecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          261 ILHVKVVKAMNLKKKDL----LGASDPYVKLKITEDK--LPSKKTT-VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~----~g~~dpyv~v~~~~~~--~~~~~T~-v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      +|.|+|+++.++...-.    ...+||||.|.+-|-.  ....+|+ +..|+-||.|+|+|+|.+..++-.-|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            79999999997765321    2457999999986533  1245888 667899999999999999999888999999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCe
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPS  358 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~  358 (538)
                      |..++|+|+|+.++|+..|..+-.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh  721 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH  721 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee
Confidence            9999999999999999999988543

>PLN02228 Phosphoinositide phospholipase C

Probab=98.91  E-value=1.6e-08  Score=106.32  Aligned_cols=123  Identities=25%  Similarity=0.365  Sum_probs=93.2

Q ss_pred             eEEEEEEEeecCCcc---C---CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeE-ecEEEEEeeCCCCCEEEEEE
Q 009307          260 GILHVKVVKAMNLKK---K---DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELAV  330 (538)
Q Consensus       260 g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~v  330 (538)
                      ..|+|+|++|++|+.   .   +.....||||+|.+.+-.  ...++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            479999999998731   1   112347999999986532  23468999999999999 99999999988778899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCc-cccEEEEEEEEEec
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK-SRGQLVVEFIYKPF  391 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~G~l~l~l~~~p~  391 (538)
                      +|+|..+.|+++|++.+|+..|..+-.   .++|...      .+.. ...+|.+++.+.+.
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~------~G~~l~~atLfv~~~~~~~  563 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR------AGKAYKNTRLLVSFALDPP  563 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC------CCCCCCCeEEEEEEEEcCc
Confidence            999988899999999999999987743   2333221      1122 34578888888754

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.90  E-value=7.2e-09  Score=109.11  Aligned_cols=99  Identities=24%  Similarity=0.343  Sum_probs=81.3

Q ss_pred             eeEEEEEEEeecCCc----cC--CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEE
Q 009307          259 VGILHVKVVKAMNLK----KK--DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV  330 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v  330 (538)
                      ...|.|+|+.+.+++    ..  +.....||||+|.+.+-.  ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            457999999998753    11  122456999999996432  2346899999999999999999999888778999999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEP  357 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~  357 (538)
                      +|+|..+.|+++|++.+|+..|..+-.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR  557 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR  557 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc
Confidence            999988889999999999999998743

>PLN02223 phosphoinositide phospholipase C

Probab=98.89  E-value=2.9e-08  Score=102.77  Aligned_cols=112  Identities=21%  Similarity=0.283  Sum_probs=87.9

Q ss_pred             CceEEEEEEEeeecCCC--------CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307          416 GGGLLVVIVHEAQDVEG--------KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE  482 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~--------~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~  482 (538)
                      ....|.|+|+.|++++.        ...+||||+|.+.|     ..++|.+..++.||+|||.|+|.+..+ .-..|.|+
T Consensus       407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~  485 (537)
T PLN02223        407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE  485 (537)
T ss_pred             cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence            35679999999998741        12579999999966     245777777899999999999999876 44579999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW  535 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w  535 (538)
                      |+|++.    .+.++++|+..+|+..+..+-   +..+|.+..     .-++.++++|
T Consensus       486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        486 VYDYEV----STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EEecCC----CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence            999985    457899999999999997654   567786542     4567777766

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.89  E-value=4.6e-09  Score=84.27  Aligned_cols=86  Identities=21%  Similarity=0.422  Sum_probs=70.5

Q ss_pred             EEEEEEeecCCccCC---CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          262 LHVKVVKAMNLKKKD---LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       262 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      |.|+|.+|+|+.-.+   ..+.+||||.+++++..  +.||++   +.||.|||+|.|.+..  ...+.+.|||... ..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~-~~   72 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGG-DQ   72 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCC-Ce
Confidence            679999999998777   56889999999999764  257765   5899999999999953  6899999999853 45


Q ss_pred             CcccEEEEEeCccCCCC
Q 009307          339 HDKMGMNVVPLKELTPE  355 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~  355 (538)
                      .-.+|..-+.++++...
T Consensus        73 ~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          73 PVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             ecceeeehhhHHHHHHH
Confidence            55789988888887653

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.81  E-value=6.4e-08  Score=99.29  Aligned_cols=179  Identities=20%  Similarity=0.324  Sum_probs=128.2

Q ss_pred             eeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccC----CCCCcccEEEEEeCccCCCCCCeEEEEecccccccC
Q 009307          296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN  371 (538)
Q Consensus       296 ~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~  371 (538)
                      ..+|.++.+.+||.|.+.|.+.......|.++++++|-+.    ...++|+|++...+..+.........+.+    .+ 
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~----~~-  116 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL----KP-  116 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc----cc-
Confidence            3589999999999999999888877778999999999774    35678999999999988765432222211    11 


Q ss_pred             CCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC--C
Q 009307          372 DGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G  446 (538)
Q Consensus       372 ~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~  446 (538)
                        ......|+|.+.+.-...                         .........+|++|..+   +++|||..++-.  .
T Consensus       117 --~~~~~~g~iti~aee~~~-------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d  169 (529)
T KOG1327|consen  117 --GKNAGSGTITISAEEDES-------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDD  169 (529)
T ss_pred             --CccCCcccEEEEeecccc-------------------------cCceeeeeeeeeecCcccccccCCcceEEEEecCC
Confidence              123456777777633210                         11222334568888765   579999999864  2


Q ss_pred             -e---EEEeeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307          447 -E---ERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS  511 (538)
Q Consensus       447 -~---~~kT~v~~~t~nP~w~e~f~f~v~~~~~---~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~  511 (538)
                       .   .++|.+++.+.+|.|.+ |.......+.   +..+.++++|++.+    ++++++|.+..++.++..
T Consensus       170 ~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  170 GSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHhcc
Confidence             2   24999999999999998 5555443322   35788999999864    567999999999999864

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.79  E-value=3.2e-09  Score=109.83  Aligned_cols=101  Identities=26%  Similarity=0.436  Sum_probs=87.6

Q ss_pred             cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCCC----CCE
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQA  325 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~  325 (538)
                      .+......|.|.|+.|+++.+-|.+|-+||||++.+.+..    ....+|+|+..|+||+|+|+|+|.|....    ...
T Consensus       941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen  941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred             EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence            3455667899999999999999999999999999998754    24569999999999999999999997432    457


Q ss_pred             EEEEEEeccCCCCCcccEEEEEeCccCCC
Q 009307          326 VELAVYDWEQVGKHDKMGMNVVPLKELTP  354 (538)
Q Consensus       326 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~  354 (538)
                      +.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus      1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             EEEEeeccceecccccchHHHHhhCCCCC
Confidence            99999999999999999999999888763

>PLN02952 phosphoinositide phospholipase C

Probab=98.76  E-value=1.2e-07  Score=100.33  Aligned_cols=111  Identities=24%  Similarity=0.314  Sum_probs=86.7

Q ss_pred             ceEEEEEEEeeecCCC--C-------CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307          417 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE  482 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~  482 (538)
                      ...|.|.|+.|++++.  .       ...||||+|.+-|     .+++|+++.++.||+|||.|+|.+..+ .-..+.|+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~P-ELAllrf~  547 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVP-ELALLRIE  547 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcC-CccEEEEE
Confidence            4689999999988742  1       1358999999965     356999999999999999999999875 34579999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW  535 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w  535 (538)
                      |+|++.    .+.++++|+..++++.+..+-   +|.+|.+..     .-.+.|++.|
T Consensus       548 V~D~D~----~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~  598 (599)
T PLN02952        548 VREYDM----SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF  598 (599)
T ss_pred             EEecCC----CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence            999875    457899999999999998765   588997542     3444555544

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.74  E-value=3.7e-08  Score=103.17  Aligned_cols=127  Identities=24%  Similarity=0.399  Sum_probs=96.1

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC---CeeeeeecCCCCCCeEe-cEEEEEeeCCCCCEEEEEEEeccC
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL---PSKKTTVKHKNLNPEWN-EEYNFTVRDPESQAVELAVYDWEQ  335 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~v~~~t~nP~w~-e~f~f~v~~~~~~~L~i~v~d~~~  335 (538)
                      -.|.|.|+.||+|+... .|...|||.|.+-|...   ..++|.|+.|++||+|| |+|+|.+.+++-..|++.|||.|-
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            46889999999999543 36678999999876432   23466777899999999 999999999998999999999999


Q ss_pred             CCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCC
Q 009307          336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEED  395 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~  395 (538)
                      ++...|||++.+|+..+..+-.   ..+|...-    + ..-....|.+.+...|..+.+
T Consensus      1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y----S-EdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY----S-EDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred             cCCcceeeeeecchhhhhccce---eeecccCc----h-hhhhhhhheeeeEeccccCcc
Confidence            9888899999999999987632   22221110    0 112345677888888876543

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.71  E-value=3.4e-08  Score=99.82  Aligned_cols=120  Identities=26%  Similarity=0.424  Sum_probs=97.1

Q ss_pred             eEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEe-cEEEEEeeCC--CCCEEEEEEEeccC
Q 009307          260 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVRDP--ESQAVELAVYDWEQ  335 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~-e~f~f~v~~~--~~~~L~i~v~d~~~  335 (538)
                      |.|.|+|..||+|+-+|.. ...|.||.++++...   ++|.+..+++||.|| +.|.|.+.+.  .+..|.+.+.|+|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            7789999999999999864 467999999999766   499999999999999 7799998764  36789999999999


Q ss_pred             CCCCcccEEEEEeCccCCCCCC----------eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          336 VGKHDKMGMNVVPLKELTPEEP----------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~----------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      .+.+|-||++.|+++.|...+.          ...|+++....       ...+|+|.+-+...
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkvd  136 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKVD  136 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEEe
Confidence            9999999999999998864321          23577765422       45688888766543

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.64  E-value=4.6e-07  Score=95.69  Aligned_cols=111  Identities=20%  Similarity=0.285  Sum_probs=86.2

Q ss_pred             ceEEEEEEEeeecCC----CC-----CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307          417 GGLLVVIVHEAQDVE----GK-----HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE  482 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~----~~-----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~  482 (538)
                      ...|.|+|+.|++++    ..     ...||||+|.+.|     .+++|+++.++.||+|||.|+|.+..+ .-..+.+.
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf~  529 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRLE  529 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEEE
Confidence            467999999998742    11     2579999999964     346999999999999999999998875 34689999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW  535 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w  535 (538)
                      |+|++.    .+.++++|+..++++.|..+-   +..+|.+..     ...+.+.++|
T Consensus       530 V~d~D~----~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        530 VHEYDM----SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEECCC----CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence            999875    457899999999999997654   456776543     3566666665

>PLN02352 phospholipase D epsilon

Probab=98.62  E-value=2.5e-07  Score=99.62  Aligned_cols=122  Identities=16%  Similarity=0.282  Sum_probs=92.9

Q ss_pred             CCeeEEEEEEEeecCCccC----CCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE
Q 009307          257 RPVGILHVKVVKAMNLKKK----DLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY  331 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~  331 (538)
                      ..-|.|.++|.+|+-+...    +.. ...||||++.+++.+.  .||   .+..||.|+|+|.+.+.......+.|.|.
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk   81 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK   81 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence            3469999999999843321    111 1239999999998764  577   66679999999999998764468999998


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCC-eEEEEecccccccCCCCCCccc-cEEEEEEEEEeccCC
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSR-GQLVVEFIYKPFKEE  394 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~  394 (538)
                      |     ...+||.+.+|..++..++. .+.|+++....      ++... ..|+++++|.|...+
T Consensus        82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence            7     25799999999999998865 78899885421      12223 599999999998765

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.62  E-value=4.1e-07  Score=96.23  Aligned_cols=111  Identities=23%  Similarity=0.250  Sum_probs=86.9

Q ss_pred             ceEEEEEEEeeecCCC--C-------CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307          417 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE  482 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~  482 (538)
                      ...|.|+|+.+++++.  .       ...||||+|.+-|     ..++|++..++.||+|||.|+|.+..+ .-..+.|+
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllRf~  546 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLRVE  546 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEEEE
Confidence            4679999999998641  1       2479999999965     235888888999999999999999875 44689999


Q ss_pred             EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307          483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW  535 (538)
Q Consensus       483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w  535 (538)
                      |+|++.    ..+++++|+..+++..|..+-   +..+|.+..     .-++.++++|
T Consensus       547 V~d~d~----~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        547 VHEHDI----NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEECCC----CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence            999885    357899999999999997654   456776543     3566677665

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.62  E-value=2.1e-07  Score=74.88  Aligned_cols=82  Identities=26%  Similarity=0.477  Sum_probs=67.8

Q ss_pred             EEEEEEeeecCCC------CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          420 LVVIVHEAQDVEG------KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       420 L~v~v~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      |.|+|+.|+|+..      .+.++|||.+.+++. +.+|++   +.||.|||.|.|.+..   ...+.+.|||+..    
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~----   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG----   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence            5789999999964      257899999999987 558887   4899999999999953   3589999999864    


Q ss_pred             CCCCceeEEEEEechhhccc
Q 009307          493 LHPKETLGYIDINLSDVVSN  512 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~  512 (538)
                       ...-.+|-.-+.++++.+.
T Consensus        71 -~~~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          71 -DQPVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             -CeecceeeehhhHHHHHHH
Confidence             2456899999999999864

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02352 phospholipase D epsilon

Probab=98.62  E-value=3.4e-07  Score=98.59  Aligned_cols=110  Identities=21%  Similarity=0.334  Sum_probs=86.2

Q ss_pred             CceEEEEEEEeeecCCCC--------CCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307          416 GGGLLVVIVHEAQDVEGK--------HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV  486 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~--------~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~  486 (538)
                      --|.|.++|.+|+.+...        ...+|||.+.+++.+. +|   .+..||.|+|+|.+.|... .+..+.+.|.|.
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~   83 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK   83 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC
Confidence            356777777777633110        1239999999998765 77   5667999999999999875 335799999873


Q ss_pred             ccCccCCCCCceeEEEEEechhhcccce-eceEEEeCCCC----C-cEEEEEEEEEeC
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSNKR-INEKYHLIDSK----N-GRIQIELQWRTA  538 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~----~-G~I~l~~~w~p~  538 (538)
                               -++||.+.++..+++.+.. +++||++.+..    . .+|+++++|+|+
T Consensus        84 ---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  132 (758)
T PLN02352         84 ---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA  132 (758)
T ss_pred             ---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence                     3799999999999999865 99999997642    3 599999999985

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.53  E-value=1.5e-07  Score=102.51  Aligned_cols=117  Identities=26%  Similarity=0.365  Sum_probs=95.0

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCC---CCCCCCcEEEEEECCe-----
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVE---GKHHTNPYARILFRGE-----  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~---~~~~~dpyv~v~~~~~-----  447 (538)
                      ++..|++.++++|.                           .|.|.|.|.-|++|+   ....+||||+.++...     
T Consensus      1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred             cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence            55677999999996                           678999999999984   3457999999999642     


Q ss_pred             EEEeeeecCCCCCcccceEEEEe-cCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFML-EEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v-~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      ++||+++++|.||.|||...+.- .... .+..|.+.||..+.    +..+.++|.+.|+|.++...++..+||+|..
T Consensus      1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            46999999999999999987762 2111 23579999998874    5678899999999999987776679999964

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.51  E-value=3.9e-07  Score=92.33  Aligned_cols=114  Identities=18%  Similarity=0.397  Sum_probs=94.2

Q ss_pred             ceEEEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCcccc-eEEEEecCCCC-CCeEEEEEEEcccCc
Q 009307          417 GGLLVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRWEE-EFQFMLEEPPT-NDRLHVEVCSVSSRI  490 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e-~f~f~v~~~~~-~~~l~v~V~d~~~~~  490 (538)
                      .|.+-|.|..||+||..    ...|.||++.+++..+||.+..++.||.||. -|.|.+.+.+. ++.+.|.+.|++.  
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt--   79 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT--   79 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence            47788999999999874    4678999999999999999999999999995 59999987544 4589999999997  


Q ss_pred             cCCCCCceeEEEEEechhhccc----------ceeceEEEeCCC---CCcEEEEEEE
Q 009307          491 GLLHPKETLGYIDINLSDVVSN----------KRINEKYHLIDS---KNGRIQIELQ  534 (538)
Q Consensus       491 g~~~~d~~lG~~~i~l~~l~~~----------~~~~~~~~L~~~---~~G~I~l~~~  534 (538)
                        .+.++.||.+.|+++.+.-.          .-+..||++-+.   -+|+|.+-+.
T Consensus        80 --ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   80 --YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             --cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence              46789999999999987631          246789998775   2688876543

>PLN02228 Phosphoinositide phospholipase C

Probab=98.49  E-value=1.9e-06  Score=90.92  Aligned_cols=113  Identities=19%  Similarity=0.239  Sum_probs=87.6

Q ss_pred             ceEEEEEEEeeecCCC----C-----CCCCcEEEEEECC-----eEEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEE
Q 009307          417 GGLLVVIVHEAQDVEG----K-----HHTNPYARILFRG-----EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHV  481 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~----~-----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~~l~v  481 (538)
                      ...|+|+|++|++|+.    .     ...||||+|.+.|     ..++|+++.++.||.| ||.|+|.+..+ .-..+.+
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~p-ELA~lRf  508 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVP-ELALLWF  508 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcC-ceeEEEE
Confidence            4579999999998731    1     2479999999854     2458999988899999 99999999875 3458999


Q ss_pred             EEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEEe
Q 009307          482 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT  537 (538)
Q Consensus       482 ~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~p  537 (538)
                      .|+|++.    .+.++++|+..++++.|..+-   +..+|.+..     ..++.+.+.+.|
T Consensus       509 ~V~D~d~----~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        509 KVQDYDN----DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEEeCCC----CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence            9999875    457899999999999996644   466776543     466777777654

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.43  E-value=2.5e-06  Score=90.43  Aligned_cols=111  Identities=19%  Similarity=0.313  Sum_probs=86.7

Q ss_pred             EEEEEEEeeecCCCC-------CCCCcEEEEEECCe-----EEEee-eecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009307          419 LLVVIVHEAQDVEGK-------HHTNPYARILFRGE-----ERKTK-HVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS  485 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~-v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d  485 (538)
                      .|.|.|+++++++..       ..+||||.|.+.|-     ..+|+ +..++-||.|+|.|+|.+..+ .-.-|.+.|+|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V~d  695 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEVHD  695 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEEEe
Confidence            899999999966431       35899999999763     34898 455799999999999999986 34589999999


Q ss_pred             cccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEEe
Q 009307          486 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT  537 (538)
Q Consensus       486 ~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~p  537 (538)
                      ++.    .++|+++|+..+|++.|..+-   +-.+|.+..     .-.+-+.+.|.+
T Consensus       696 ~d~----~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  696 YDY----IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             cCC----CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence            986    467999999999999997654   355665531     466777777653

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.27  E-value=6.8e-06  Score=86.71  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             ceEEEEEEEeeecCCCC--CCCCcEEEEEECCe------EEEeeeecCCCCCccc-ceEEEEecCCCCCCeEEEEEEEcc
Q 009307          417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRGE------ERKTKHVKKNRDPRWE-EEFQFMLEEPPTNDRLHVEVCSVS  487 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~------~~kT~v~~~t~nP~w~-e~f~f~v~~~~~~~~l~v~V~d~~  487 (538)
                      .-.|.|.|+.||.|+..  +...|||+|.+-|.      .++|.++.++.||+|| |.|+|.+.++ .-..|.+.|++.+
T Consensus      1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEeccc
Confidence            35688999999999875  35679999999652      3355677789999999 9999999997 4468999999998


Q ss_pred             cCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      .    ++...+||++..|+..+..+-   +..+|.+
T Consensus      1143 m----fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1143 M----FSDPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred             c----cCCcceeeeeecchhhhhccc---eeeeccc
Confidence            4    788889999999999886542   3455544

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.25  E-value=2.6e-06  Score=70.63  Aligned_cols=102  Identities=22%  Similarity=0.310  Sum_probs=75.7

Q ss_pred             EEEEEEeeecCCCC----------------CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEecCC------
Q 009307          420 LVVIVHEAQDVEGK----------------HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEP------  473 (538)
Q Consensus       420 L~v~v~~a~~L~~~----------------~~~dpyv~v~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~------  473 (538)
                      |.|.|++|.+|...                =..|+||++.+.    ++.++|+++.++-.|.|+..++|++.-.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            35677787777421                136899999963    4667999999999999999999998711      


Q ss_pred             --------CCCCeEEEEEEEcccCccC------CCCCceeEEEEEechhhccc-ceeceEEEe
Q 009307          474 --------PTNDRLHVEVCSVSSRIGL------LHPKETLGYIDINLSDVVSN-KRINEKYHL  521 (538)
Q Consensus       474 --------~~~~~l~v~V~d~~~~~g~------~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L  521 (538)
                              -....+.++||.+.....-      -.+|-.||.+.||+.+|+.. ..+..||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                    1134799999987643110      12466899999999999985 578899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.25  E-value=7.7e-07  Score=97.08  Aligned_cols=106  Identities=25%  Similarity=0.268  Sum_probs=87.5

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEE---eeCCCCCEEEEEEEec
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT---VRDPESQAVELAVYDW  333 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~---v~~~~~~~L~i~v~d~  333 (538)
                      .|+|.|-|..|++|+--.....+||||+.++.+..  ..++||+++++|.||+|||...+.   ......+.|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            68999999999999654445678999999997643  345799999999999999988765   2223367899999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      +....+.++|.+.++|.++...+....|+.+
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeec
Confidence            9999999999999999999877766667765

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=98.24  E-value=5.1e-06  Score=86.01  Aligned_cols=225  Identities=17%  Similarity=0.268  Sum_probs=158.2

Q ss_pred             CCCCceeCCCC-------cchHHHHHHHHhhch------hHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEeeCCCCC
Q 009307           58 EIPLWVKCPDY-------DRVDWLNKFLELMWP------YLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP  124 (538)
Q Consensus        58 ~~p~w~~~~~~-------E~~~WlN~~l~~~W~------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~  124 (538)
                      +.|.|......       -.|..+|.++...+.      ..+.++.+.....++.++....-+-.++.+++.++-||.+.
T Consensus        81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f  160 (1051)
T KOG3532|consen   81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF  160 (1051)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence            58888766322       356677888888876      34456666666667777766443334899999999999999


Q ss_pred             CeEeeeEEEecC------------C-------------CeEEEEeeeeEeCCCCeEEEEEE-eceeeEEEEEeEEEEEEE
Q 009307          125 PTFQGMKVYVTD------------E-------------KELIMEPCLKWAANPNVTIGVKA-FGLKATVQVVDLQVFAQP  178 (538)
Q Consensus       125 P~i~~v~~~~~~------------~-------------~~~~l~~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~  178 (538)
                      |.+++.+++.-+            +             ..+.+-.++.|.|+..-++++.. .+.+..+.|+-.+++|.+
T Consensus       161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~  240 (1051)
T KOG3532|consen  161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV  240 (1051)
T ss_pred             ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence            999999998610            0             12345668899998888887765 344555666678999999


Q ss_pred             EEEEecCCCCCCeeEEEEEEcCCCCeEEEEEEE--ccccccccchHHHHHHHHHHHHHhhhcccCcccc-------cccc
Q 009307          179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKL--VGADLMSIPGLYRFVQELIKTQVANMYLWPKTLE-------VPIL  249 (538)
Q Consensus       179 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~--~g~~~~~~P~l~~~i~~~i~~~l~~~~v~P~~~~-------~pi~  249 (538)
                      |+.+.    ..|+ .+|+++|+..|.++-+++.  .|..+.+  .+...|...++..+.+.+.||++--       .|+.
T Consensus       241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~  313 (1051)
T KOG3532|consen  241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF  313 (1051)
T ss_pred             eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence            99997    5677 8999999999988666553  2222211  2345677777788888899998422       2222


Q ss_pred             CCCc-----cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC
Q 009307          250 DPSK-----AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE  291 (538)
Q Consensus       250 ~~~~-----~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~  291 (538)
                      ....     ..-.+.|.+.|++.++..|...  .++..-||.+.+.+
T Consensus       314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES  358 (1051)
T ss_pred             ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence            1111     1235679999999999988754  47788999998864

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=3.7e-06  Score=80.47  Aligned_cols=96  Identities=31%  Similarity=0.453  Sum_probs=79.9

Q ss_pred             cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA  329 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  329 (538)
                      .++.....|.|++++|.+|..+|.+|.+||||..++.+..  .-+++|.+.+++.||.||+.|.|.+...  ....+.|.
T Consensus       227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls  306 (362)
T KOG1013|consen  227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS  306 (362)
T ss_pred             ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence            4556678899999999999999999999999999987543  2246899999999999999999988643  36789999


Q ss_pred             EEeccCCCCCcccEEEEEeC
Q 009307          330 VYDWEQVGKHDKMGMNVVPL  349 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l  349 (538)
                      |||++..+..+++|-+...+
T Consensus       307 vgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  307 VGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             ecccCCCcCccCCCcccccc
Confidence            99999887888888765443

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.05  E-value=3.3e-06  Score=64.92  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=68.2

Q ss_pred             EEEEEeecCCccCCCCC-CCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCCCCC
Q 009307          263 HVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKH  339 (538)
Q Consensus       263 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d  339 (538)
                      -++++.|++|.-....| .+.-|++--+.-.+....+|++.++..||+|+|+|.|.+...  .+-.|-+.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            57899999997654333 344566655443333346899999999999999999987643  35678889988  56788


Q ss_pred             cccEEEEEeCccCCCC
Q 009307          340 DKMGMNVVPLKELTPE  355 (538)
Q Consensus       340 ~~lG~~~i~l~~l~~~  355 (538)
                      +.||.|++.++++-.+
T Consensus        80 e~iG~~sL~l~s~gee   95 (103)
T cd08684          80 RTIGECSLSLRTLSTQ   95 (103)
T ss_pred             ceeeEEEeecccCCHH
Confidence            9999999999998755

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.91  E-value=0.0028  Score=63.18  Aligned_cols=231  Identities=16%  Similarity=0.295  Sum_probs=152.0

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC-------CCCCEEEEEEEecc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-------PESQAVELAVYDWE  334 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~v~d~~  334 (538)
                      +.|+|++++|.+...   ...-.+..++++...   .|..+..+..|.||.+....+..       .....|++++|..|
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            578999999998762   346678888888765   77788899999999998888752       23678999999988


Q ss_pred             -CCCCCcccEEEEEeCccC---CCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCc--c---c--
Q 009307          335 -QVGKHDKMGMNVVPLKEL---TPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKS--F---E--  401 (538)
Q Consensus       335 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~--~---~--  401 (538)
                       ..++.+.+|.+.++|...   ..+  .....|++|.....    +-.+.+-+|.+.+.............  .   .  
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p  151 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP  151 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence             557778999999999998   544  34567777754321    11234557777777665443210000  0   0  


Q ss_pred             -ccc----c---ccc----------------CCCCCCCCceEEEEEEEeeecCCCC---------CCCCcEEEEEECCeE
Q 009307          402 -ESQ----T---VQK----------------APENTPAGGGLLVVIVHEAQDVEGK---------HHTNPYARILFRGEE  448 (538)
Q Consensus       402 -~~~----~---~~~----------------~~~~~~~~~g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~  448 (538)
                       ..+    .   ...                .+.+.....-+|.|++..|+||..-         +...-|....+-|..
T Consensus       152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~  231 (340)
T PF12416_consen  152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND  231 (340)
T ss_pred             cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence             000    0   000                0111112345678888899887532         124457777777888


Q ss_pred             EEeeeecCCCCCccc-ceEE-EEecCC--------CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307          449 RKTKHVKKNRDPRWE-EEFQ-FMLEEP--------PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS  511 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~-e~f~-f~v~~~--------~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~  511 (538)
                      ..|.......+|.|. |.-. +.+...        .....|.|.++..         +..||.+.+++..++.
T Consensus       232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~  295 (340)
T PF12416_consen  232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLP  295 (340)
T ss_pred             eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccC
Confidence            888888888899875 3333 555532        1224677777754         4789999999999974

>PLN02964 phosphatidylserine decarboxylase

Probab=97.78  E-value=3e-05  Score=83.30  Aligned_cols=91  Identities=16%  Similarity=0.296  Sum_probs=75.1

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEE-EEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKL-KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v-~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      .+.-.|+..+++++|+    ++.   .|||..+ ++|.+.   +||.+.++|.||+|||...|.+...+....++.|||.
T Consensus        49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  118 (644)
T PLN02964         49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET  118 (644)
T ss_pred             cccccCeEEEEeehhh----hcc---CCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence            4556899999999997    332   4886554 555443   6999999999999999999999877767789999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCC
Q 009307          334 EQVGKHDKMGMNVVPLKELTPE  355 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~  355 (538)
                      +++++++++|.|++++.++...
T Consensus       119 ~~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        119 NRLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CCCCHHHhhhheeecHhhccHH
Confidence            9999999999999988776644

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.76  E-value=4.2e-05  Score=78.97  Aligned_cols=88  Identities=28%  Similarity=0.544  Sum_probs=70.9

Q ss_pred             EEeecCCccCCCCCCCCcEEEEEEc---CccCCeeeeeecCCCCCCeEecEEEEEeeCCC----CCEEEEEEEeccCCCC
Q 009307          266 VVKAMNLKKKDLLGASDPYVKLKIT---EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVGK  338 (538)
Q Consensus       266 v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~~~  338 (538)
                      .++|++|.++|..+++|||..++-.   +.....++|.+.++++||.|.+ |.+......    ...+.+.+||++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            3568999999999999999998753   2223457999999999999995 444443222    5678999999999999


Q ss_pred             CcccEEEEEeCccCCC
Q 009307          339 HDKMGMNVVPLKELTP  354 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~  354 (538)
                      ++++|++..++.++..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence            9999999999999875

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.66  E-value=5.9e-05  Score=74.30  Aligned_cols=118  Identities=19%  Similarity=0.308  Sum_probs=93.6

Q ss_pred             CceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEEeeeecCCCCCcccceEEEEecCCCC----------CC
Q 009307          416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERKTKHVKKNRDPRWEEEFQFMLEEPPT----------ND  477 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~----------~~  477 (538)
                      ....|.+.|.++++++..   ...|.|+++.+-     .++.+|.+++.+.+|.|+|.|...+...+.          ..
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            345677888888887642   356789998873     234589999999999999999999976221          12


Q ss_pred             eEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC---CcEEEEEEEEE
Q 009307          478 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWR  536 (538)
Q Consensus       478 ~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~---~G~I~l~~~w~  536 (538)
                      -++++++.+.   |++++|.++|.+++.|.-|.....+...++|.+..   +|++.+++..|
T Consensus       445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             CeeEEEeecc---ccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            4889999876   45789999999999999998888899999999864   69999888765

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.57  E-value=6.8e-05  Score=57.79  Aligned_cols=91  Identities=15%  Similarity=0.233  Sum_probs=66.2

Q ss_pred             EEEEeeecCCC--C--CCCCcEEEEEEC--C-eEEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEcccCccCC
Q 009307          422 VIVHEAQDVEG--K--HHTNPYARILFR--G-EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGLL  493 (538)
Q Consensus       422 v~v~~a~~L~~--~--~~~dpyv~v~~~--~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~-~l~v~V~d~~~~~g~~  493 (538)
                      +++.+|++|.-  .  .++.-|++-.+.  . -..||...++..||.|.|+|.|.+......+ .|.+.|+..      +
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------~   76 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------T   76 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------C
Confidence            67889998842  2  244457766553  2 2349999999999999999999887643433 788999874      4


Q ss_pred             CCCceeEEEEEechhhcccceeceEE
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKY  519 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~  519 (538)
                      .+++.||.+.++|+++-.. ...+|.
T Consensus        77 ~RKe~iG~~sL~l~s~gee-E~~HW~  101 (103)
T cd08684          77 PRKRTIGECSLSLRTLSTQ-ETDHWL  101 (103)
T ss_pred             CccceeeEEEeecccCCHH-Hhhhhh
Confidence            6789999999999987543 234554

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.45  E-value=0.00012  Score=60.95  Aligned_cols=101  Identities=19%  Similarity=0.301  Sum_probs=71.2

Q ss_pred             EEEEEEeecCCccCCC---------C----CCCCcEEEEEEcC-ccCCeeeeeecCCCCCCeEecEEEEEee--------
Q 009307          262 LHVKVVKAMNLKKKDL---------L----GASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVR--------  319 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~---------~----g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~w~e~f~f~v~--------  319 (538)
                      |.|.|++|.+|+..-.         .    -.-++||++.+.- .....++|+++-++.-|+|+.+++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4678889998875321         0    1237899999643 1223468999999999999999999875        


Q ss_pred             C-------CCCCEEEEEEEeccCC----------CCCcccEEEEEeCccCCCCC-CeEEEE
Q 009307          320 D-------PESQAVELAVYDWEQV----------GKHDKMGMNVVPLKELTPEE-PSVKTL  362 (538)
Q Consensus       320 ~-------~~~~~L~i~v~d~~~~----------~~d~~lG~~~i~l~~l~~~~-~~~~~~  362 (538)
                      +       .+...+.++||+.+..          .+|-.||.+.||+.+|.... +...|+
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~  141 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY  141 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence            1       1256899999997632          34568999999999987542 333444

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.34  E-value=0.00033  Score=75.43  Aligned_cols=100  Identities=19%  Similarity=0.394  Sum_probs=77.8

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEE-EEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYAR-ILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH  494 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~-v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~  494 (538)
                      -.|++.+++++|+    ++..|+|.. +++|.+.+||...++|.||+||+...|.+... .....++.|||.++    ++
T Consensus        52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~s  122 (644)
T PLN02964         52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNR----LS  122 (644)
T ss_pred             ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCC----CC
Confidence            4789999999998    233588655 56677889999999999999999988888764 33467999999986    78


Q ss_pred             CCceeEEEEEechhhcccc--eeceEEEeCCC
Q 009307          495 PKETLGYIDINLSDVVSNK--RINEKYHLIDS  524 (538)
Q Consensus       495 ~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~  524 (538)
                      .++.+|.++++|.++...+  .+.+-|.+.++
T Consensus       123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~  154 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQEPESACESFDLLDP  154 (644)
T ss_pred             HHHhhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence            9999999999998887643  23334555554

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.00037  Score=68.20  Aligned_cols=104  Identities=24%  Similarity=0.358  Sum_probs=82.4

Q ss_pred             CceEEEEEEEeeecCCCC----CCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307          416 GGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV  486 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~  486 (538)
                      ..|-+.|.|++|++|..+    -.++|||+|++.+.     +.+|+...+|.+|.|.+...|.-.  +....|.+.||-.
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s--p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS--PPGKYLQGTVWGD  344 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC--CCccEEEEEEecc
Confidence            567899999999999643    26899999999653     349999999999999887777543  3456899999965


Q ss_pred             ccCccCCCCCceeEEEEEechhhcccc-eeceEEEeCCC
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDS  524 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~  524 (538)
                      -..   +..+.++|.+++-+.++-... ....||+|-+.
T Consensus       345 ygR---md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  345 YGR---MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             ccc---cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            332   567889999999999997654 67899999764

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.00036  Score=68.36  Aligned_cols=109  Identities=26%  Similarity=0.426  Sum_probs=85.0

Q ss_pred             CCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE-e
Q 009307          257 RPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-D  332 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d  332 (538)
                      ..+|.+.|.|++|++|..+... ..++|||+|++.+.  ...+.+|+...+|.+|.+.+...|.-. +....|.+.|| |
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            3579999999999999876532 36899999999654  344568999899999988877776654 34778999999 4


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCC-CeEEEEeccc
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLLK  366 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~~  366 (538)
                      +.++.++.|+|.+.+-+.+|.... ....|+++..
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            566777789999999999998765 5566777643

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.01  E-value=0.017  Score=50.59  Aligned_cols=119  Identities=18%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             CceEEEEEEEeeecCCCC-----CCCCc--EEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC------------CC
Q 009307          416 GGGLLVVIVHEAQDVEGK-----HHTNP--YARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP------------TN  476 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~-----~~~dp--yv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~------------~~  476 (538)
                      ....|++.|.+++-+-..     +..+.  ++-+.++++.++|+.+..+.+|.|+|.|-|.+....            ..
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            466788999988743210     23333  555566889999999999999999999999997642            13


Q ss_pred             CeEEEEEEEcccCccCCCCCceeEEEEEechhhccccee--ceEEEeCCC------CCcEEEEEEEEEeC
Q 009307          477 DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRI--NEKYHLIDS------KNGRIQIELQWRTA  538 (538)
Q Consensus       477 ~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~------~~G~I~l~~~w~p~  538 (538)
                      +.+++-|...+.+    +...++|+-.+....++..+..  .-..+|.+.      +.|-+.++++..|.
T Consensus        87 ~pihivli~~d~~----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   87 DPIHIVLIRTDPS----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CceEEEEEEecCC----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence            4688888877652    3458999999999999986643  455666543      25999999998874

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.00  E-value=0.00072  Score=66.87  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=93.0

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEc--CccCCeeeeeecCCCCCCeEecEEEEEeeCC-----------CC
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT--EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-----------ES  323 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~-----------~~  323 (538)
                      .....|.+.|+++.+++........|-|+++.+.  .......+|.++++|.+|.|+|.|.+.+...           ..
T Consensus       364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr  443 (523)
T KOG3837|consen  364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR  443 (523)
T ss_pred             cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence            3456677888888887654422345778888763  2222345899999999999999999998751           13


Q ss_pred             CEEEEEEEeccCC-CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          324 QAVELAVYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       324 ~~L~i~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      ..++|++|++..+ .+|.++|.|.+.|..|...-.....+++...       .....|.|.+.+...-
T Consensus       444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR~  504 (523)
T KOG3837|consen  444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIRQ  504 (523)
T ss_pred             cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEec
Confidence            4689999998764 5678999999999999887666667776431       2457788888887763

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.95  E-value=0.0082  Score=59.93  Aligned_cols=112  Identities=17%  Similarity=0.353  Sum_probs=88.3

Q ss_pred             EEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC------CCCCeEEEEEEEcccCccCC
Q 009307          420 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP------PTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~------~~~~~l~v~V~d~~~~~g~~  493 (538)
                      +.+.|.+|++++......-.+...+++....|..+.++..|.||......+...      .....|++++|.-+..   -
T Consensus         2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T   78 (340)
T ss_pred             EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence            578899999999876677899999999999999999999999999888877532      2345899999987732   2


Q ss_pred             CCCceeEEEEEechhh---ccc--ceeceEEEeCCCC------CcEEEEEEE
Q 009307          494 HPKETLGYIDINLSDV---VSN--KRINEKYHLIDSK------NGRIQIELQ  534 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~------~G~I~l~~~  534 (538)
                      +..+.+|.+.++|..+   ..+  ....+||+|.+.+      .-+|.|.+.
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~  130 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLS  130 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEE
Confidence            4678999999999988   443  3567999998762      355555543

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.69  E-value=0.047  Score=48.55  Aligned_cols=89  Identities=21%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEec
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDW  333 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~  333 (538)
                      ..++|+|+++.++.-.+   .+|-||.+.+  +++... ...|+.+. ..++.|||...|.+.-   +....|.|.+|+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            45789999999987543   4688888855  433321 12344333 3679999999997752   3367899999997


Q ss_pred             cCCC----CCcccEEEEEeCccC
Q 009307          334 EQVG----KHDKMGMNVVPLKEL  352 (538)
Q Consensus       334 ~~~~----~d~~lG~~~i~l~~l  352 (538)
                      ....    ....+|.+.++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            6421    224699999888763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.24  E-value=0.2  Score=43.74  Aligned_cols=124  Identities=24%  Similarity=0.335  Sum_probs=79.8

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeC--------CCCCEEEE
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRD--------PESQAVEL  328 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~--------~~~~~L~i  328 (538)
                      ..-.+.|++++..+++..    ...-||+...+.......+|.... .+..-.|||+|.+.+.-        .....+.|
T Consensus         5 ~kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            445678999999988762    223455554444331123343332 34457899999987652        12457889


Q ss_pred             EEEeccCCCCCcccEEEEEeCccCCCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEeccC
Q 009307          329 AVYDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE  393 (538)
Q Consensus       329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  393 (538)
                      .|+.....++...+|.+.++|.++...  ......+++...        ......|++++.+.+..+
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~  139 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE  139 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence            999885433446899999999999875  345555555321        245678999998887643

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.86  E-value=0.074  Score=47.27  Aligned_cols=91  Identities=29%  Similarity=0.419  Sum_probs=62.9

Q ss_pred             eEEEEEEEeeecCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEcccC
Q 009307          418 GLLVVIVHEAQDVEGKHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSR  489 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~  489 (538)
                      ..++|.|+++.++.-....+-||++.+  +++.    ..|+.+.. .++.|||-.+|++  .+.+.+..|.+++|+....
T Consensus         8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~   86 (158)
T cd08398           8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR   86 (158)
T ss_pred             CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence            357899999998876656788888855  4443    24544443 7899999877765  4555677999999987642


Q ss_pred             ccCCCCCceeEEEEEechhh
Q 009307          490 IGLLHPKETLGYIDINLSDV  509 (538)
Q Consensus       490 ~g~~~~d~~lG~~~i~l~~l  509 (538)
                      .+--.....+|.++++|-+-
T Consensus        87 ~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          87 KGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             cCCCCceEEEEEEEEEEECC
Confidence            10001235799999999773

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.49  E-value=0.024  Score=61.44  Aligned_cols=90  Identities=23%  Similarity=0.385  Sum_probs=68.3

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecC-CCCCCeEecE-EEEE-eeCCCCCEEEEEEE
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKH-KNLNPEWNEE-YNFT-VRDPESQAVELAVY  331 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~-~t~nP~w~e~-f~f~-v~~~~~~~L~i~v~  331 (538)
                      .+.+.|+|+++.-|..++    ...||.|.+-+-.    .+.+||+++. ++.||+|+|+ |.|. |.-++-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            478899999999997655    3589999985422    1345777665 7899999964 7775 33444578999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCC
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEE  356 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~  356 (538)
                      +++    ..++|+-.+|+..+..+-
T Consensus       778 eEg----gK~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  778 EEG----GKFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             ccC----CceeeeeccchhcccCcc
Confidence            975    469999999999998874

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.45  E-value=0.22  Score=43.81  Aligned_cols=128  Identities=14%  Similarity=0.185  Sum_probs=85.6

Q ss_pred             CeeEEEEEEEeecCCccCCC--CCCCCcE--EEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-----------
Q 009307          258 PVGILHVKVVKAMNLKKKDL--LGASDPY--VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-----------  322 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~--~g~~dpy--v~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-----------  322 (538)
                      ....|.++|..++-....-.  .+..+.-  +.+.+++++   ++|+.+..+.+|.|+|.|-|.+....           
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll   83 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL   83 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence            45678899988875432211  1333444  444455655   58999999999999999999987442           


Q ss_pred             --CCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCe--EEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307          323 --SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS--VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK  392 (538)
Q Consensus       323 --~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (538)
                        .+.+.+.|...|..+...++|+-.++=..+......  ....++....    .......|-|.+++...|..
T Consensus        84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence              456888888887776678889888877766655443  4445443211    11234789999999988853

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=95.38  E-value=0.039  Score=52.96  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=78.2

Q ss_pred             CCCeeEEEEEEEeecCCccCCC--CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          256 RRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      ....|+|.+++..+++|+-...  .-.-+-||++..+.+.  ..||.+.....-=.|.|+|+..+.+  ...+.+-||.+
T Consensus        47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW  122 (442)
T KOG1452|consen   47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW  122 (442)
T ss_pred             ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence            3467999999999999985432  2345889999987654  2466665555555799999998875  36788999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          334 EQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      +.-.++++.-.-.+.+..+... ..+...+.            -..+|++.+++.+.
T Consensus       123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA  167 (442)
T ss_pred             CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence            8776777644334444443322 22223332            34678777777554

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.34  E-value=0.12  Score=46.76  Aligned_cols=91  Identities=20%  Similarity=0.377  Sum_probs=63.5

Q ss_pred             EEEEEEEeeecCCC-CCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEcccC
Q 009307          419 LLVVIVHEAQDVEG-KHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSR  489 (538)
Q Consensus       419 ~L~v~v~~a~~L~~-~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~  489 (538)
                      .++|+|+++.++.. ....+-||++.+  |++.    ..|+.+....++.|||.++|.+  .+.+.+..|.+.||+....
T Consensus         9 ~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~   88 (173)
T cd08693           9 KFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKK   88 (173)
T ss_pred             CEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEeccc
Confidence            57899999999876 445667777644  5543    3666666567899999888755  4556677999999986531


Q ss_pred             c-c-----------CCCCCceeEEEEEechhh
Q 009307          490 I-G-----------LLHPKETLGYIDINLSDV  509 (538)
Q Consensus       490 ~-g-----------~~~~d~~lG~~~i~l~~l  509 (538)
                      . |           --+.+..||.++++|-+-
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          89 AKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             ccccccccccccccccCcceEEEEEeEEEEcc
Confidence            0 0           001246899999999763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.27  E-value=0.11  Score=46.98  Aligned_cols=90  Identities=18%  Similarity=0.291  Sum_probs=60.2

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEee--C-CCCCEEEEEEEec
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW  333 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~  333 (538)
                      ..++|+|+++.++...+  ...+-||.+.+  |++... ...|+....+.++.|||.+.|.+.  + +....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            46899999999998622  34567777644  444331 224555554567999999999765  2 3367899999997


Q ss_pred             cCCC----------------CCcccEEEEEeCcc
Q 009307          334 EQVG----------------KHDKMGMNVVPLKE  351 (538)
Q Consensus       334 ~~~~----------------~d~~lG~~~i~l~~  351 (538)
                      ....                .+..||.+.++|-+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            5422                13467877777655

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=95.18  E-value=0.21  Score=39.28  Aligned_cols=84  Identities=21%  Similarity=0.340  Sum_probs=59.8

Q ss_pred             CCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEE
Q 009307          281 SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK  360 (538)
Q Consensus       281 ~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~  360 (538)
                      ++-.+++.+++...  .+|.-. ...+..|++.|.+.+..  +.+|+|.||-+|-   ..+.|...+.|++...    ..
T Consensus         9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~~   76 (98)
T cd08687           9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV   76 (98)
T ss_pred             cceEEEEEEcCeEE--eecccc-ccccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence            57788888887553  466553 33578999999999965  5899999998763   3577888888888322    22


Q ss_pred             EEecccccccCCCCCCccccEEEEEEEE
Q 009307          361 TLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      .++            -.+.|.+...++|
T Consensus        77 ~~~------------lepqg~l~~ev~f   92 (98)
T cd08687          77 QLD------------MEPQLCLVAELTF   92 (98)
T ss_pred             eec------------cccccEEEEEEEe
Confidence            222            3467888888877

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.11  E-value=0.79  Score=39.91  Aligned_cols=115  Identities=20%  Similarity=0.296  Sum_probs=76.4

Q ss_pred             eEEEEEEEeeecCCCCCCCCcEEEEEECCeE---EEeee-ecCCCCCcccceEEEEecCC---C---C-CCeEEEEEEEc
Q 009307          418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE---RKTKH-VKKNRDPRWEEEFQFMLEEP---P---T-NDRLHVEVCSV  486 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~---~kT~v-~~~t~nP~w~e~f~f~v~~~---~---~-~~~l~v~V~d~  486 (538)
                      -.+.+.+++..+++. ....-||+...++..   .+|.. ......-.|||.|.+.+.-.   .   . ...+.+.|+..
T Consensus         7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~   85 (143)
T PF10358_consen    7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV   85 (143)
T ss_pred             EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence            356788888888876 233345555555543   34433 33456678999998877521   1   1 12688888876


Q ss_pred             ccCccCCCCCceeEEEEEechhhccc--ceeceEEEeCCC--CCcEEEEEEEEEe
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLIDS--KNGRIQIELQWRT  537 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~--~~G~I~l~~~w~p  537 (538)
                      ...    +....+|.+.++|++....  ......++|...  .+..+++++++.+
T Consensus        86 ~~~----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~  136 (143)
T PF10358_consen   86 DGS----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE  136 (143)
T ss_pred             cCC----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence            321    1236999999999999884  466778888775  3688888888765

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.06  E-value=0.13  Score=45.72  Aligned_cols=93  Identities=24%  Similarity=0.345  Sum_probs=61.4

Q ss_pred             eEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccC-CeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEec
Q 009307          260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDW  333 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~  333 (538)
                      ..++|++....++...+ ....+-||.+.+  +++.. ....|.....+.++.|||...|.+.-   +....|.+.+|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35678888888776521 234566777754  44322 22234433334789999999998642   3367899999998


Q ss_pred             cCCC--CCcccEEEEEeCccCC
Q 009307          334 EQVG--KHDKMGMNVVPLKELT  353 (538)
Q Consensus       334 ~~~~--~d~~lG~~~i~l~~l~  353 (538)
                      +..+  ++..||.+.++|-+-.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEccc
Confidence            7554  4678999999987743

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.84  E-value=0.054  Score=58.91  Aligned_cols=88  Identities=20%  Similarity=0.272  Sum_probs=67.9

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEEEEECC-------eEEEeeeec-CCCCCcccc-eEEEEecCCCCCCeEEEEEEEc
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVK-KNRDPRWEE-EFQFMLEEPPTNDRLHVEVCSV  486 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~-~t~nP~w~e-~f~f~v~~~~~~~~l~v~V~d~  486 (538)
                      -.+.+.|+|++++=|..+ ....||+|.+-|       +.++|+++. ++.||+|+| .|.|.-.-.+.-..|.|.|++.
T Consensus       701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE  779 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE  779 (1189)
T ss_pred             EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence            456789999999977654 566999999955       345888777 589999996 4888654444456899999987


Q ss_pred             ccCccCCCCCceeEEEEEechhhccc
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSN  512 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~  512 (538)
                      +        ..+||+-.++++.+..+
T Consensus       780 g--------gK~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  780 G--------GKFIGQRILPVDGLNAG  797 (1189)
T ss_pred             C--------CceeeeeccchhcccCc
Confidence            5        47999999999888654

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.19  E-value=0.32  Score=43.29  Aligned_cols=89  Identities=24%  Similarity=0.407  Sum_probs=60.2

Q ss_pred             EEEEEEEeeecCCC--CCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEccc
Q 009307          419 LLVVIVHEAQDVEG--KHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSS  488 (538)
Q Consensus       419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~  488 (538)
                      .++|.+++..+...  ....+-||++.+  +++.    ..|.......++.|||-.+|++  .+.+.+..|.+.+|+...
T Consensus         9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~   88 (156)
T cd08380           9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE   88 (156)
T ss_pred             CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence            46777888777654  234556777644  4442    2444444457899999988875  455567799999999764


Q ss_pred             CccCCCCCceeEEEEEechhh
Q 009307          489 RIGLLHPKETLGYIDINLSDV  509 (538)
Q Consensus       489 ~~g~~~~d~~lG~~~i~l~~l  509 (538)
                      ..  -..+..||.++++|-+-
T Consensus        89 ~~--~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          89 PG--SKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             CC--CCcceEEEEEeEEeEcc
Confidence            20  01357999999999774

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.85  E-value=0.25  Score=44.71  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=62.9

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCCe-eeeeecC----CCCCCeEecEEEEEeeC---CCCCEEEE
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPS-KKTTVKH----KNLNPEWNEEYNFTVRD---PESQAVEL  328 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~----~t~nP~w~e~f~f~v~~---~~~~~L~i  328 (538)
                      ...+.|+|.++.+++........|-|+.+.+  +++.... ..|+...    -...+.|||...|.+.-   +....|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3568899999999987654445788888855  4433211 1333211    12357799999988752   33678999


Q ss_pred             EEEeccCCC---------CCcccEEEEEeCccC
Q 009307          329 AVYDWEQVG---------KHDKMGMNVVPLKEL  352 (538)
Q Consensus       329 ~v~d~~~~~---------~d~~lG~~~i~l~~l  352 (538)
                      .+|+....+         .+..||.+.++|-+-
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999976543         346899998887664

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.58  E-value=0.46  Score=43.04  Aligned_cols=73  Identities=18%  Similarity=0.204  Sum_probs=45.7

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEecc
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWE  334 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~~  334 (538)
                      .++|+|.++.++. .+......-||++.+  ++......+|+...-+.+|.|||...|.+.-   +....|.|.||+..
T Consensus        11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4678888887433 222222335555533  4333323356666667789999999888652   33678999999974

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=93.43  E-value=1.2  Score=40.22  Aligned_cols=72  Identities=17%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             CCCcEEEEEEcCccCCeeeeeecC--CCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCC
Q 009307          280 ASDPYVKLKITEDKLPSKKTTVKH--KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE  355 (538)
Q Consensus       280 ~~dpyv~v~~~~~~~~~~~T~v~~--~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~  355 (538)
                      +..-|+++.++++..  .+|+...  ....-.|||.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus        36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~  109 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH  109 (168)
T ss_pred             heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence            446799999998765  3554433  334456889999999875 6789999999886 6788999999998665543

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.41  E-value=0.24  Score=44.10  Aligned_cols=74  Identities=20%  Similarity=0.341  Sum_probs=52.1

Q ss_pred             CCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEeccCCCCCcccEEEEEeCccC
Q 009307          279 GASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWEQVGKHDKMGMNVVPLKEL  352 (538)
Q Consensus       279 g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l  352 (538)
                      ..+|-||.+.+  ++.... ..+|+.+.-+..+.|||...|++.-   +....|.|+||+.+..++...+|.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            45677888765  333221 1245555556678899999998752   33678999999988666677999999988764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.20  E-value=0.44  Score=41.62  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=44.1

Q ss_pred             EcCccCC--eeeeeecCCC-CCCeEecEEEEEee---CCCCCEEEEEEEeccCCCCC----cccEEEEEeCccC
Q 009307          289 ITEDKLP--SKKTTVKHKN-LNPEWNEEYNFTVR---DPESQAVELAVYDWEQVGKH----DKMGMNVVPLKEL  352 (538)
Q Consensus       289 ~~~~~~~--~~~T~v~~~t-~nP~w~e~f~f~v~---~~~~~~L~i~v~d~~~~~~d----~~lG~~~i~l~~l  352 (538)
                      .|++...  ...|....-+ .++.|||...|.+.   -+....|.|.||+.+....+    ..||.+.++|-+.
T Consensus        12 ~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   12 HGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             ETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             ECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            3554443  2356555555 79999999999875   23477899999998865555    6899999998775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=93.11  E-value=1.4  Score=34.69  Aligned_cols=83  Identities=14%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             CCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccce
Q 009307          436 TNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR  514 (538)
Q Consensus       436 ~dpyv~v~~~~~~~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~  514 (538)
                      .+..+.+.+.++.. .|.-. ...+..|++.|.+.+...   ..|.|.|+-+|-       ..+-|-..+.|.+...   
T Consensus         9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs---RELEI~VywrD~-------RslCav~~lrLEd~~~---   74 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS---RELEIAVYWRDW-------RSLCAVKFLKLEDERH---   74 (98)
T ss_pred             cceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc---cEEEEEEEEecc-------hhhhhheeeEhhhhcc---
Confidence            56677888877654 45433 346889999999998753   689999998763       3677888888888422   


Q ss_pred             eceEEEeCCCCCcEEEEEEEE
Q 009307          515 INEKYHLIDSKNGRIQIELQW  535 (538)
Q Consensus       515 ~~~~~~L~~~~~G~I~l~~~w  535 (538)
                       ....++  .++|.+...+.|
T Consensus        75 -~~~~~l--epqg~l~~ev~f   92 (98)
T cd08687          75 -EVQLDM--EPQLCLVAELTF   92 (98)
T ss_pred             -cceecc--ccccEEEEEEEe
Confidence             122233  357887777665

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.15  E-value=0.67  Score=41.31  Aligned_cols=71  Identities=15%  Similarity=0.283  Sum_probs=51.3

Q ss_pred             CCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccCccCCCCCceeEEEEEec
Q 009307          435 HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL  506 (538)
Q Consensus       435 ~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l  506 (538)
                      .++-||++.+  +++.    ..|+.+.-+..+.|||-.+|++.  +.+.+..|.++||+....    +....+|.++++|
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~----~~~~~vg~~~~~l  104 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT----GKAVPFGGTTLSL  104 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC----CCceEEEEEEEee
Confidence            4667777755  4442    26666666778899998777764  555667999999998642    3467999999999


Q ss_pred             hhh
Q 009307          507 SDV  509 (538)
Q Consensus       507 ~~l  509 (538)
                      -+-
T Consensus       105 Fd~  107 (159)
T cd08397         105 FNK  107 (159)
T ss_pred             ECC
Confidence            764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=92.01  E-value=2.2  Score=38.44  Aligned_cols=96  Identities=16%  Similarity=0.337  Sum_probs=66.7

Q ss_pred             CCCcEEEEEECCeEE-Eeeeec--CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307          435 HTNPYARILFRGEER-KTKHVK--KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS  511 (538)
Q Consensus       435 ~~dpyv~v~~~~~~~-kT~v~~--~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~  511 (538)
                      ...-|+++.++++.. +|+...  ..-.-.|+|.|.+.+...|  +.|.++||....     ..+..|+.+.+++-....
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~~-----~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKSG-----LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEccC-----ccceEEEEEEeeCCCCcc
Confidence            456799999999875 554433  3333458999999998754  689999998863     468899999999866543


Q ss_pred             c--ce--eceEEEeCCC------------------------CCcEEEEEEEEEe
Q 009307          512 N--KR--INEKYHLIDS------------------------KNGRIQIELQWRT  537 (538)
Q Consensus       512 ~--~~--~~~~~~L~~~------------------------~~G~I~l~~~w~p  537 (538)
                      .  ..  ..++|.+...                        -+|+|.+++.|-.
T Consensus       109 ~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~  162 (168)
T PF15625_consen  109 HTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAV  162 (168)
T ss_pred             cccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeC
Confidence            2  11  3455555310                        1599999999953

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=91.24  E-value=1.5  Score=38.25  Aligned_cols=56  Identities=27%  Similarity=0.523  Sum_probs=40.2

Q ss_pred             EeeeecCC-CCCcccceEEEEe--cCCCCCCeEEEEEEEcccCccCCCCC----ceeEEEEEechhh
Q 009307          450 KTKHVKKN-RDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPK----ETLGYIDINLSDV  509 (538)
Q Consensus       450 kT~v~~~t-~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~~g~~~~d----~~lG~~~i~l~~l  509 (538)
                      .|+....+ .++.|||..+|.+  .+.+.+..|.+.||..+..    ..+    ..||.+.++|-+-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence            56666665 8999999877765  5666777999999988753    223    6999999999775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.31  E-value=2.5  Score=38.28  Aligned_cols=91  Identities=12%  Similarity=0.142  Sum_probs=56.2

Q ss_pred             EEEEEEEeeecCCCCC--CCCcEEEEEE--CCeE---EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccC
Q 009307          419 LLVVIVHEAQDVEGKH--HTNPYARILF--RGEE---RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR  489 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~~--~~dpyv~v~~--~~~~---~kT~v~~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~  489 (538)
                      .++|.|+++.++....  ...-||++.+  ++..   .+|+...-+.++.|||-.+|.+.  +.+....|.+.||+....
T Consensus        11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~   90 (178)
T cd08399          11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP   90 (178)
T ss_pred             CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence            4667777776432222  2334666533  4432   25666666778999998777664  555667999999986321


Q ss_pred             c------c------CCCCCceeEEEEEechhh
Q 009307          490 I------G------LLHPKETLGYIDINLSDV  509 (538)
Q Consensus       490 ~------g------~~~~d~~lG~~~i~l~~l  509 (538)
                      .      |      .-..+..||.+++.|-+-
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             cccccccccccccccccccceEEEEEEEEEcC
Confidence            0      0      001256899999998774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=89.46  E-value=3.3  Score=40.70  Aligned_cols=109  Identities=17%  Similarity=0.273  Sum_probs=74.7

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCC--cccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDP--RWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP--~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      ..-.|-|.|++..++...  ...|+.+..+....+|..+.-+..-  .-++.....++.  .+..|++.++...     +
T Consensus        56 RkF~LLVeI~EI~~i~k~--khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-----L  126 (508)
T PTZ00447         56 RTFYLLVKINEIFNINKY--KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-----L  126 (508)
T ss_pred             ceeeEEEEehhhhccccc--eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc-----c
Confidence            344577777777777653  5679999999988888665533322  233445555543  3458999998775     5


Q ss_pred             CCCceeEEEEEechh-hcccc-eeceEEEeCCCC--CcEEEEEE
Q 009307          494 HPKETLGYIDINLSD-VVSNK-RINEKYHLIDSK--NGRIQIEL  533 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~-l~~~~-~~~~~~~L~~~~--~G~I~l~~  533 (538)
                      .+..-||.+.+.++. +++.. +..+||.+...+  .++|.|++
T Consensus       127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF  170 (508)
T PTZ00447        127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF  170 (508)
T ss_pred             cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence            678899999999965 44443 567999996554  47777765

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=89.28  E-value=3.7  Score=37.51  Aligned_cols=56  Identities=18%  Similarity=0.338  Sum_probs=41.2

Q ss_pred             CeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCCC--CCcccEEEEEeCc
Q 009307          295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVG--KHDKMGMNVVPLK  350 (538)
Q Consensus       295 ~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~--~d~~lG~~~i~l~  350 (538)
                      ..++|.|...+.+|.|+|++.+.+...  ....|.|++++.....  ....+|-+-+||-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            346889999999999999999988643  3667888887754221  1256888888874

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=87.87  E-value=1.2  Score=43.17  Aligned_cols=111  Identities=15%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             CCceEEEEEEEeeecCCCC----C-CCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307          415 AGGGLLVVIVHEAQDVEGK----H-HTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS  488 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~----~-~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~  488 (538)
                      ..+|+|.+++..+++|...    | ..+-|+.+....+. .+|.+......-.|.|.|+..+.+.   +.+.+-||.++.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p  124 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP  124 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence            3689999999999998542    2 45678888886543 3666655555667899999988763   578888887764


Q ss_pred             CccCCCCCc--eeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEE
Q 009307          489 RIGLLHPKE--TLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW  535 (538)
Q Consensus       489 ~~g~~~~d~--~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w  535 (538)
                      .    .+.+  ..|  -+.+..+ .++..++.+.|.-.++|++.+++.+
T Consensus       125 q----~RHKLC~~g--~l~~~~v-~rqspd~~~Al~lePrgq~~~r~~~  166 (442)
T KOG1452|consen  125 Q----RRHKLCHLG--LLEAFVV-DRQSPDRVVALYLEPRGQPPLRLPL  166 (442)
T ss_pred             h----hhccccccc--hhhhhhh-hhcCCcceeeeecccCCCCceeccc
Confidence            2    1222  344  2333333 2334456677766678888777654

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=87.86  E-value=3  Score=37.71  Aligned_cols=93  Identities=25%  Similarity=0.329  Sum_probs=60.8

Q ss_pred             ceEEEEEEEeeecCCCC---CCCCcEEEEEE--CCeE----EEeeeec----CCCCCcccceEEEEec--CCCCCCeEEE
Q 009307          417 GGLLVVIVHEAQDVEGK---HHTNPYARILF--RGEE----RKTKHVK----KNRDPRWEEEFQFMLE--EPPTNDRLHV  481 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~--~~~~----~kT~v~~----~t~nP~w~e~f~f~v~--~~~~~~~l~v  481 (538)
                      ...+.|+|.++.+++..   ...+-||++.+  +++.    ..|+...    -...+.|||-.+|.+.  +.+.+..|.+
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            44678889999988764   24677888755  5443    2444322    2346779998777664  4455679999


Q ss_pred             EEEEcccCc-c----CCCCCceeEEEEEechhh
Q 009307          482 EVCSVSSRI-G----LLHPKETLGYIDINLSDV  509 (538)
Q Consensus       482 ~V~d~~~~~-g----~~~~d~~lG~~~i~l~~l  509 (538)
                      .+|+..... +    .-..+..||.++++|-+-
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999876420 0    000357999999999764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=87.58  E-value=3.5  Score=33.50  Aligned_cols=73  Identities=19%  Similarity=0.268  Sum_probs=46.5

Q ss_pred             EEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEecc
Q 009307          262 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWE  334 (538)
Q Consensus       262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~~  334 (538)
                      +.+++..+.+..-......+|-||.+.+  +++... ...|+.+.-...+.|||...|++.-   +....|.+.+|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5566667766654433223578888865  443321 1245555555568999999987652   33678999999865

Outlier of C2 family.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=87.49  E-value=3.4  Score=37.76  Aligned_cols=56  Identities=20%  Similarity=0.313  Sum_probs=34.6

Q ss_pred             eeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEEEeccCCCC---CcccEEEEEeCcc
Q 009307          296 SKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGK---HDKMGMNVVPLKE  351 (538)
Q Consensus       296 ~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~---d~~lG~~~i~l~~  351 (538)
                      ...|.+..++.+|.|+|+|.+.+....  ...|.|++++...-.+   +..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            457888889999999999999887543  6689999998653221   1689999999887

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=86.43  E-value=7  Score=35.85  Aligned_cols=56  Identities=14%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             CeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCC-CCC---cccEEEEEeCc
Q 009307          295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-GKH---DKMGMNVVPLK  350 (538)
Q Consensus       295 ~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-~~d---~~lG~~~i~l~  350 (538)
                      ...+|.|...+.+|.|+|++.+.+...  ....|.|++++.... .+|   ..+|-+-+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            346888888999999999999988643  367899999875421 122   46888888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=81.61  E-value=6.1  Score=32.58  Aligned_cols=95  Identities=13%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             EEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC-------CCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCC
Q 009307          284 YVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE  356 (538)
Q Consensus       284 yv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~-------~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~  356 (538)
                      ||.+.+-.-.  ...|.++. +.+|.+|-+-.|.|...       .+..+.++++..- ....+.+|.+.+++..+....
T Consensus         2 Fct~dFydfE--tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~   77 (107)
T PF11618_consen    2 FCTYDFYDFE--TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESN   77 (107)
T ss_dssp             EEEE-STT-----EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--
T ss_pred             EEEEEeecee--eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCC
Confidence            3444443332  34677765 78999998888887643       2568999998875 334678999999999988554


Q ss_pred             C--eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          357 P--SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       357 ~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      .  ......+..       .++..-|.|...++..
T Consensus        78 ~~~i~~~~~l~g-------~~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   78 GERIHGSATLVG-------VSGEDFGTLEYWIRLR  105 (107)
T ss_dssp             S--EEEEEEE-B-------SSS-TSEEEEEEEEEE
T ss_pred             CceEEEEEEEec-------cCCCeEEEEEEEEEec
Confidence            3  223333321       1244788888777654

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=80.46  E-value=9.9  Score=31.33  Aligned_cols=93  Identities=19%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             EEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCC------CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307          439 YARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPP------TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS  511 (538)
Q Consensus       439 yv~v~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~------~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~  511 (538)
                      ||.+.+-. +.+.|.++. +.+|.+|-+-.|.+....      ....+.++++..-.     ..-..+|.+++++.++++
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-----~d~~tla~~~i~l~~ll~   75 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-----SDFETLAAGQISLRPLLE   75 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-----S-EEEEEEEEE--SHHHH
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-----CCeEEEEEEEeechhhhc
Confidence            45555544 445666665 899999988888776431      12478999987642     235799999999999996


Q ss_pred             cc--eeceEEEeCCCC---CcEEEEEEEEEe
Q 009307          512 NK--RINEKYHLIDSK---NGRIQIELQWRT  537 (538)
Q Consensus       512 ~~--~~~~~~~L~~~~---~G~I~l~~~w~p  537 (538)
                      +.  .+...-.|.+..   -|.++..++.+-
T Consensus        76 ~~~~~i~~~~~l~g~~~~~~g~l~y~~rl~~  106 (107)
T PF11618_consen   76 SNGERIHGSATLVGVSGEDFGTLEYWIRLRV  106 (107)
T ss_dssp             --S--EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence            43  466667776543   488887777653

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=80.27  E-value=9.2  Score=34.91  Aligned_cols=60  Identities=18%  Similarity=0.285  Sum_probs=34.6

Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechh
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSD  508 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~  508 (538)
                      ...|.+..++.+|.|+|+|.+.++.... ...|.+++++...+.+ -..+..+|.+.++|-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-KEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-S-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-cCccceeEEEEEEeee
Confidence            3578888899999999999999986532 2378888887654311 0112799999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	538
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		7e-14
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		1e-12
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		3e-12
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		7e-12
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		2e-11
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		2e-11
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		2e-10
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		7e-10
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		7e-10
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		7e-10
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		9e-10
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		1e-09
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		9e-09
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		1e-08
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		1e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-08
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-08
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		5e-08
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		6e-08
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		8e-08
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		9e-08
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		4e-07
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		5e-07
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		5e-07
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		8e-06
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		1e-05
3pyc_A	132	Crystal Structure Of Human Smurf1 C2 Domain Length		2e-05
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-05
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		2e-05
2jqz_A	131	Solution Structure Of The C2 Domain Of Human Smurf2		2e-05
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		2e-05
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		3e-05
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		4e-05
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		3e-04

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 8/136 (5%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKI----TEDKLPSKKTTVKHKNLNPEWNEEYNF 316
           IL VKVV  ++L KKD+ GASDPYVKL +       +L   +T    K LNP+WNEE+ F
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
            V +P +  +   V+D  ++ + D +G   VPL  L  E+P+++     K+  L   ++ 
Sbjct: 82  RV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRP-RSH 139
Query: 377 KSR--GQLVVEFIYKP 390
           KSR  G L ++  Y P
Sbjct: 140 KSRVKGFLRLKMAYMP 155

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 14/160 (8%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFT 317
           ++ VKV+  + L KKD+LGASDPYV++ + +     L S +T    K+LNP+WNEE  F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 377
           V  P+   +   V+D  ++ + D +G   VPL  L  E P ++     K+  L+  ++ K
Sbjct: 69  VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH-PRSHK 126
Query: 378 SR--GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPA 415
           SR  G L ++  Y       LPK+  E +   +A E  P 
Sbjct: 127 SRVKGYLRLKMTY-------LPKNGSEDENADQAEELEPG 159

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKLPSKKTTVKHKNLNPEWNEEYNFT 317
           I+ V+V+  + L KKD+LGASDPYV++ + +     L S +T    K+LNP+WNEE  F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN-DGQNE 376
           V  P+   +   V+D  ++ + D +G   VPL  L  E P ++     K+  L+      
Sbjct: 81  VH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS 139
Query: 377 KSRGQLVVEFIYKP 390
           + +G L ++  Y P
Sbjct: 140 RVKGYLRLKMTYLP 153

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
           S    + VGIL VKV+KA +L   D  G SDP+  L++  D+L   +T   +KNLNPEWN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPEWN 61
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL 370
           + + F ++D     +E+ V+D +     D +G   +PL  +   +P+     +LKN DL
Sbjct: 62  KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCY---VLKNKDL 116

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 48/222 (21%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V++++A++L  KD  G SDPYVK+ +  D+    +T V  K LNP +NE + F+V   
Sbjct: 23  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 322 E--SQAVELAVYDWEQVGKHDKMGM----NVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 375
           E   + +  +VYD+++  +HD +G     N++ L E  P+ P  +        D+ +G +
Sbjct: 83  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWR--------DILEGGS 134
Query: 376 EKSR-GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKH 434
           EK+  G+L     Y P                           GLL V + +A +++   
Sbjct: 135 EKADLGELNFSLCYLP-------------------------TAGLLTVTIIKASNLKAMD 169
Query: 435 HT---NPYARILFRGEERKTK----HVKKNR-DPRWEEEFQF 468
            T   +PY +     E R+ K     +KKN  +P + E   F
Sbjct: 170 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 48/222 (21%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V++++A++L  KD  G SDPYVK+ +  D+    +T V  K LNP +NE + F+V   
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 322 E--SQAVELAVYDWEQVGKHDKMGM----NVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 375
           E   + +  +VYD+++  +HD +G     N++ L E  P+ P  +        D+ +G +
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWR--------DILEGGS 133
Query: 376 EKSR-GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKH 434
           EK+  G+L     Y P                           GLL V + +A +++   
Sbjct: 134 EKADLGELNFSLCYLP-------------------------TAGLLTVTIIKASNLKAMD 168
Query: 435 HT---NPYARILFRGEERKTK----HVKKNR-DPRWEEEFQF 468
            T   +PY +     E R+ K     +KKN  +P + E   F
Sbjct: 169 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
           S  Y      L VK++KA  L  KD  G SDP+VK+ +  DK    +T VK KNLNP WN
Sbjct: 18  SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 312 EEY---NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL------------KELTPEE 356
           E +    F       + + L V D+++  ++D +G   +PL            K+L P  
Sbjct: 78  ETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137
Query: 357 PS 358
           PS
Sbjct: 138 PS 139

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++ F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 322 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 355
           E   + + +AVYD+++  KHD +G     MN V    +T E
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 144

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++ F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 355
           E   + + +AVYD+++  KHD +G     MN V    +T E
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++ F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 355
           E   + + +AVYD+++  KHD +G     MN V    +T E
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++ F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 322 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 355
           E   + + +AVYD+++  KHD +G     MN V    +T E
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 119

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++ F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 322 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 355
           E   + + +AVYD+++  KHD +G     MN V    +T E
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           +HV V +A NL   D  G SDPYVKLK+  D   L  +KT      LNP WNE + F ++
Sbjct: 22  IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 320 DPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
             +  + + + V+DW++  ++D MG     + EL
Sbjct: 82  PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTVR 319
           LHV V  A NL   D  G SDPYVKLK+  D K  SK KT      LNP+WNE + F ++
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 320 -DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
              + + + + ++DW++  ++D MG     + EL
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTVR 319
           LHV V  A NL   D  G SDPYVKLK+  D K  SK KT      LNP+WNE + F ++
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 320 -DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
              + + + + ++DW++  ++D MG     + EL
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTV 318
           +L V V  A NL   D  G SDPYVKLK+  D K  SK KT     +LNPEWNE + F +
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 319 RDPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
           ++ +  + + + ++DW+   ++D MG     + EL
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHK-NLNPEWNEEYNFTV 318
           +L V V  A NL   D  G SDPYVKLK+  D K  SK+ T   K +LNPEWNE + F +
Sbjct: 32  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 319 RDPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
           ++ +  + + + ++DW+   ++D MG     + EL
Sbjct: 92  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTVR 319
           LHV V  A NL   D  G SDPYVKLK+  D K  SK KT      LNP+WNE + F ++
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 320 -DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
              + + + + ++DW++  ++D  G     + EL
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
           S  Y    G L V +++ ++L   D  G SDP+VKL +  D  K    KT +K K LNPE
Sbjct: 29  SLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPE 88
Query: 310 WNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMG 343
           +NEE+ + ++  D   ++++++V+D++    +D +G
Sbjct: 89  FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIG 124

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
           S  Y    G L V +++ ++L   D  G SDP+VKL +  D  K    KT +K K LNPE
Sbjct: 29  SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 310 WNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMG 343
           +NEE+ + ++  D   ++++++V+D++    +D +G
Sbjct: 89  FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIG 124

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
           S  Y    G L V +++ ++L   D  G SDP+VKL +  D  K    KT +K K LNPE
Sbjct: 7   SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 310 WNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMG 343
           +NEE+ + ++  D   ++++++V+D++    +D +G
Sbjct: 67  FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIG 102

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
           S  Y    G L V +++A NLKK D+ G SDPYVK+ + ++  +L  KKTT+K   LNP 
Sbjct: 17  SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76
Query: 310 WNEEYNFTVRDPESQAVE--LAVYDWEQVGKHDKMG 343
           +NE ++F V   + Q V+  + V D++++GK+D +G
Sbjct: 77  YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 112

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
           S  Y    G L V +++A NLKK D+ G SDPYVK+ + ++  +L  KKTT+K   LNP 
Sbjct: 10  SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 69
Query: 310 WNEEYNFTVRDPESQAVE--LAVYDWEQVGKHDKMG 343
           +NE ++F V   + Q V+  + V D++++GK+D +G
Sbjct: 70  YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 105

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
           S  Y    G L V +++A NLKK D+ G SDPYVK+ + ++  +L  KKTT+K   LNP 
Sbjct: 9   SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 68
Query: 310 WNEEYNFTVRDPESQAVE--LAVYDWEQVGKHDKMG 343
           +NE ++F V   + Q V+  + V D++++GK+D +G
Sbjct: 69  YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 104

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKI-TEDKLPSKKTTVKHKNLNPEWNEEYNF 316
           P G L V +V A  L+  D L   DPYV+L   T+D+   K    +     PEWNE + F
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ---KSNVAEGMGTTPEWNETFIF 64
Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
           TV +  ++ ++  ++D +   + D +G   +PL+ +  E     T         N  ++E
Sbjct: 65  TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA-------YNVVKDE 116
Query: 377 KSRGQLVVEFIYKP 390
           + +G++ V   +KP
Sbjct: 117 EYKGEIWVALSFKP 130

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
           +G L V V++A  LK     G S+PY ++ +      S  T      LNP+WN    F +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQFFI 442
Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
           +D     + L ++D +Q    D +G   +P+ ++  E+ S
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482

>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           + + V+ A NL KKD     DP+ K+ +          TVK+  L+P+WN+ Y+  V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKT 65
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP------EEPSVKTLDLLKNMDLNDGQN 375
           +S  + +    W     H K G   +    L        ++   + LDL K   LN    
Sbjct: 66  DSITISV----WNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK---LNPSDT 118
Query: 376 EKSRGQLVVEF 386
           +  RGQ+VV  
Sbjct: 119 DAVRGQIVVSL 129

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 235 ANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL 294
           AN Y   +   +  L+ S  Y +    L   +++A  LK  D  G +DPYVKL +    L
Sbjct: 2   ANSYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHL----L 57
Query: 295 P--SKKTTVKHKNL----NPEWNEE---YNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 345
           P  SK   ++ K L    NP WNE    +  T  D + + + ++V D ++ G ++ +G  
Sbjct: 58  PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 117
Query: 346 VVPLKELTPEE 356
              LK+L   +
Sbjct: 118 RFSLKKLKANQ 128

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPE 309
           S  Y+     L V V+KA +L K D+ G SDPYVK+ +   + ++  KKT VK    N  
Sbjct: 22  SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 81
Query: 310 WNEEYNFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVV 347
           +NE + F +     E  +VE  V D E+  +++ +G  V+
Sbjct: 82  FNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121

>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           L + V+ A NL KKD     DP+ K+ +          TVK+  L+P+WN+ Y+  +   
Sbjct: 5   LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYI--G 61
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP------EEPSVKTLDLLKNMDLNDGQN 375
           +S +V ++V++ +++  H K G   +    L        ++   + LDL K   L    N
Sbjct: 62  KSDSVTISVWNHKKI--HKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCK---LGPNDN 116
Query: 376 EKSRGQLVVEF 386
           +  RGQ+VV  
Sbjct: 117 DTVRGQIVVSL 127

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 21/119 (17%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           + + VV A  L+ KD  G+SDPYV +++ + K   K+T   + NLNP W E ++F   + 
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHN- 74
Query: 322 ESQAVELAVYDWEQVGKH-----------DKMGMNVVPLKELTPEEPSVKTLDLLKNMD 369
            S  +++ V D +   K            D +G  ++ ++ L+ E      +D+  N+D
Sbjct: 75  SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE------MDVWYNLD 127

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 235 ANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL 294
           AN Y   +   +  L+ S  Y +    L   +++A  LK  D  G +DPYVKL +    L
Sbjct: 4   ANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHL----L 59
Query: 295 P--SKKTTVKHKNL----NPEWNEEYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMN 345
           P  SK   ++ K L    NP WNE   +   T  D + + + ++V D ++ G ++ +G  
Sbjct: 60  PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 119
Query: 346 VVPLKELTPEE 356
              LK+L   +
Sbjct: 120 RFSLKKLKANQ 130

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 262 LHVKVVKAMNL-------KKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           L V+V++A +L         +  +  S+PYVK+ +  D+  SK+T VK K   P + E Y
Sbjct: 28  LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 315 NFTVRDPESQ--AVELAVYDWEQVGKHDKMGMNVVPLKEL 352
            F +   E+Q   + L V D+++  +H  +G   VPL E+
Sbjct: 88  TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPE 309
           S  Y      + V ++KA NLK  D+ G SDPYVK  L   + ++  KKT  K +NLNP 
Sbjct: 8   SLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI 67
Query: 310 WNEEYNFTV--RDPESQAVELAVYDWEQVGKHDKMG 343
           +NE + F +         + + V D +++ ++D +G
Sbjct: 68  FNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIG 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	538
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-46
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-21
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-44
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-12
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-44
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-07
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	4e-44
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-07
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-41
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-14
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	8e-40
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	8e-12
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-38
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	9e-23
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-37
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-12
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	4e-36
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-12
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	5e-33
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-10
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	9e-33
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-08
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	7e-32
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-09
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-31
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	5e-16
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-31
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	9e-09
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-30
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-13
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-30
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-10
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-28
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-06
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-28
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-10
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	6e-28
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-09
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	6e-27
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-08
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-25
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-07
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-24
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	8e-07
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-23
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-04
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	6e-23
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	9e-09
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	7e-23
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-06
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	7e-23
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-10
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	3e-22
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-08
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-22
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-04
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	5e-22
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-04
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-21
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-05
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-21
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-11
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-21
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-07
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	5e-21
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-07
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	6e-21
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-08
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	7e-21
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-09
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-20
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-08
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-20
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-10
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-13
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	3e-13
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-11
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	6e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	9e-11
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	9e-08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	5e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-04
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	3e-04
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	8e-04
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	9e-04

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  161 bits (410), Expect = 6e-46
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 44/264 (16%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           Y      L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++
Sbjct: 14  YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 73

Query: 315 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
            F V   +   + + +AVYD+++  KHD +G   VP+  +     + +  DL        
Sbjct: 74  TFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--- 130

Query: 373 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQD--- 429
            + ++  G +     Y P                           G L V++ EA++   
Sbjct: 131 -EEQEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKK 164

Query: 430 VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDR-LHVEV 483
           ++    ++PY +I       R +++KT   K   +P + E F F +         + V V
Sbjct: 165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 224

Query: 484 CSVSSRIGLLHPKETLGYIDINLS 507
                    +   + +G + +  +
Sbjct: 225 LD----YDKIGKNDAIGKVFVGYN 244

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 94.1 bits (234), Expect = 1e-21
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 245 EVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVK 302
           ++  +  S  Y    G L V +++A NLKK D+ G SDPYVK+ + ++  +L  KKTT+K
Sbjct: 135 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK 194

Query: 303 HKNLNPEWNEEYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
              LNP +NE ++F V   + Q V   + V D++++GK+D +G   V       E
Sbjct: 195 KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 249

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  153 bits (388), Expect = 1e-44
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
           S     P G L V +V A  L+  D L   DPYV+L         K    +     PEWN
Sbjct: 2   SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59

Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
           E + FTV +  ++ ++  ++D +   + D +G   +PL+ +  E         +     N
Sbjct: 60  ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111

Query: 372 DGQNEKSRGQLVVEFIYKPFKEED 395
             ++E+ +G++ V   +KP     
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 19/128 (14%)

Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEP 473
           G L V++  A+ +E        +PY ++  R +++K+   +     P W E F F + E 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 474 PTNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRI-NEKYHLIDSKN--G 527
                L  ++      +         + +G   I L  V     I    Y+++  +   G
Sbjct: 70  --TTELKAKIFDKDVGTE-------DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKG 120

Query: 528 RIQIELQW 535
            I + L +
Sbjct: 121 EIWVALSF 128

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  154 bits (390), Expect = 1e-44
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWN 311
           +     ++ VKV+  + L KKD+LGASDPYV++ +       L S +T    K+LNP+WN
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62

Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
           EE  F V  P+   +   V+D  ++ + D +G   VPL  L  E P ++     K+  L+
Sbjct: 63  EEILFRV-LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121

Query: 372 -DGQNEKSRGQLVVEFIYKPFKEE-----DLPKSFEESQTVQKAPENTPA 415
                 + +G L ++  Y P         D  +  E    V   P+    
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATH 171

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 418 GLLVVIVHEAQDVEGKHHTN---PYARILFRGEER------KTKHVKKNRDPRWEEEFQF 468
            ++ V V     +  K       PY R+             +TK +KK+ +P+W EE  F
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 469 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINE 517
            +   P   R+  EV         L   + LG +D+ L  + +     E
Sbjct: 68  RV--LPQRHRILFEVFDE----NRLTRDDFLGQVDVPLYPLPTENPRME 110

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  152 bits (385), Expect = 4e-44
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWN 311
                 I+ V+V+  + L KKD+LGASDPYV++ + +     L S +T    K+LNP+WN
Sbjct: 15  DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74

Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
           EE  F V  P+   +   V+D  ++ + D +G   VPL  L  E P ++     K+  L+
Sbjct: 75  EEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133

Query: 372 D-GQNEKSRGQLVVEFIYKP 390
                 + +G L ++  Y P
Sbjct: 134 PRSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 32/143 (22%)

Query: 417 GGLLVVIVHEAQDVEGKHHTN---PYARILFRGEER------KTKHVKKNRDPRWEEEFQ 467
             ++ V V     +  K       PY R+             +TK +KK+ +P+W EE  
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 468 FMLEEPPTNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 524
           F +   P   RL  EV     ++         + LG +D+ L  + +     E+ +    
Sbjct: 79  FRV--HPQQHRLLFEVFDENRLTR-------DDFLGQVDVPLYPLPTENPRLERPYTFKD 129

Query: 525 KN-----------GRIQIELQWR 536
                        G +++++ + 
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMTYL 152

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  144 bits (365), Expect = 2e-41
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
           G+L V V  A N+ K    G  DP V +   ++K   KKT      LNP WNE   F +R
Sbjct: 7   GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLR 62

Query: 320 DPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
                 S ++ + V D+E +G++  +G   V LK+LT ++       L+    L + + +
Sbjct: 63  GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLNEKGQ 119

Query: 377 KSRGQLVVEFIYKPFKEE 394
            +   + +   Y P    
Sbjct: 120 DTGATIDLVIGYDPPSGP 137

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 21/137 (15%)

Query: 413 TPAGGGLLVVIVHEAQDVEGKHH--TNPYARILFRGEERKTKHVKKNRDPRWEEEFQFML 470
           +    G+L VIV  A ++        +P   ++F+ E++KTK V    +P W E  +F L
Sbjct: 2   SSGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61

Query: 471 EEPP--TNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525
              P   +  L + V    ++          + +G   + L D+  ++  +  Y LI   
Sbjct: 62  RGIPLDFSSSLGIIVKDFETIGQ-------NKLIGTATVALKDLTGDQSRSLPYKLISLL 114

Query: 526 N-------GRIQIELQW 535
           N         I + + +
Sbjct: 115 NEKGQDTGATIDLVIGY 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  140 bits (354), Expect = 8e-40
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
           S    + VGIL VKV+KA +L   D  G SDP+  L++  D+L   +T   +KNLNPEWN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPEWN 61

Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
           + + F ++D     +E+ V+D +     D +G   +PL  +   +P+      LKN DL 
Sbjct: 62  KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYV---LKNKDLE 117

Query: 372 DGQNEKSRGQLVVEFIY 388
                  +G + +E   
Sbjct: 118 Q----AFKGVIYLEMDL 130

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP 474
           G+L V V +A D+     +   +P+  +    +  +T  V KN +P W + F F +++  
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI- 71

Query: 475 TNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKR---INEKYHLIDSKNGR 528
            +D L V V                + LG + I L  +   +    + +   L  +  G 
Sbjct: 72  -HDVLEVTVFDEDGDKP-------PDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGV 123

Query: 529 IQIELQW 535
           I +E+  
Sbjct: 124 IYLEMDL 130

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  142 bits (359), Expect = 1e-38
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 45/265 (16%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           Y      L V++++A++L  KD  G SDPYVK+ +  D+    +T V  K LNP +NE +
Sbjct: 15  YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF 74

Query: 315 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
            F+V   +   + +  +VYD+++  +HD +G  V+       E+P  + L      D+ +
Sbjct: 75  QFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL----WRDILE 130

Query: 373 GQNEK-SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVE 431
           G +EK   G+L     Y P                           GLL V + +A +++
Sbjct: 131 GGSEKADLGELNFSLCYLPT-------------------------AGLLTVTIIKASNLK 165

Query: 432 GKHHT---NPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML-EEPPTNDRLHVE 482
               T   +PY +        R ++RKT   K   +P + E   F +  E   N  L + 
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225

Query: 483 VCSVSSRIGLLHPKETLGYIDINLS 507
           V         +   E +G   +   
Sbjct: 226 VVD----YDCIGHNEVIGVCRVGPE 246

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 97.6 bits (243), Expect = 9e-23
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y    G+L V ++KA NLK  DL G SDPYVK  +  +  +L  +KT++K   LNP +NE
Sbjct: 147 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 206

Query: 313 EYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
              F V     E+  + +AV D++ +G ++ +G+  V  +   P  
Sbjct: 207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 252

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  132 bits (335), Expect = 3e-37
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 14/128 (10%)

Query: 262 LHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
             V V++A  + K    D+L   DPYV+L I+      K+T   + ++NP WNE + F +
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 378
              +   +E+ + D       + +G     +  +   E                  N+ +
Sbjct: 65  DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIF----------NQVT 113

Query: 379 RGQLVVEF 386
              L +  
Sbjct: 114 EMVLEMSL 121

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 21/134 (15%)

Query: 417 GGLLVVIVHEAQDVEGKHHTN------PYARILFRG---EERKTKHVKKNRDPRWEEEFQ 467
                V+V  A  V      +      PY  +         ++T+H   + +P W E F+
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61

Query: 468 FMLEEPPTNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 524
           F+L+    N  L + +     V          ETLG     +S +   ++    +     
Sbjct: 62  FILDPNQEN-VLEITLMDANYVMD--------ETLGTATFTVSSMKVGEKKEVPFIFNQV 112

Query: 525 KNGRIQIELQWRTA 538
               +++ L+  ++
Sbjct: 113 TEMVLEMSLEVASS 126

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score =  130 bits (328), Expect = 4e-36
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 409 APENTPAGGGL-LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPR-WEEEF 466
           +    P G  + L+V +    ++ G+   +  A++ FRG+   ++ ++   D   ++E F
Sbjct: 11  SSGLVPRGSHMALIVHLKTVSELRGRA--DRIAKVTFRGQSFYSRVLENCEDVADFDETF 68

Query: 467 QFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525
           ++ +      N+ L +++ + S     +   + +G   + L  VV   R+     LID  
Sbjct: 69  RWPVASSIDRNEVLEIQIFNYSK----VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDN 124

Query: 526 NGRIQIELQWR 536
           N  I+  L   
Sbjct: 125 NAIIKTSLSME 135

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 17/132 (12%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNP-EWNEEYNFTVRD 320
           L V +     L+ +     +D   K+           + V     +  +++E + + V  
Sbjct: 23  LIVHLKTVSELRGR-----ADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74

Query: 321 P--ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 378
               ++ +E+ ++++ +V  +  +G   + L+++  EE  V+  D      L D  N   
Sbjct: 75  SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVV-EENRVEVSD-----TLIDDNNAII 128

Query: 379 RGQLVVEFIYKP 390
           +  L +E  Y+ 
Sbjct: 129 KTSLSMEVRYQA 140

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  121 bits (306), Expect = 5e-33
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
           + + V+ A NL KKD     DP+ K+ +         T      L+P+WN+ Y+  V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ-CHSTDTVKNTLDPKWNQHYDLYVGKT 65

Query: 322 ESQAVELAVYDWEQVGKHDK---MGMNVVPLKELTP-EEPSVKTLDLLKNMDLNDGQNEK 377
           +S  +   V++ +++ K      +G   +    ++  ++   + LDL K ++ +D   + 
Sbjct: 66  DSITIS--VWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK-LNPSD--TDA 120

Query: 378 SRGQLVVEF 386
            RGQ+VV  
Sbjct: 121 VRGQIVVSL 129

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 27/140 (19%)

Query: 415 AGGGLLVVIVHEAQ-----DVEGKHHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQ 467
           +    + + V  A+     D       +P+A+I+  G      T  VK   DP+W + + 
Sbjct: 2   SEFIKIRLTVLCAKNLAKKDFFRL--PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYD 59

Query: 468 FMLEEPPTNDRLHVEVCS---VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 524
             + +    D + + V +   +  + G       LG + +  + +   K    +   +  
Sbjct: 60  LYVGK---TDSITISVWNHKKIHKKQG----AGFLGCVRLLSNAISRLKDTGYQRLDLCK 112

Query: 525 KN--------GRIQIELQWR 536
            N        G+I + LQ R
Sbjct: 113 LNPSDTDAVRGQIVVSLQTR 132

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  121 bits (305), Expect = 9e-33
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           Y      L VK++KA  L  KD  G SDP+VK+ +  DK    +T VK KNLNP WNE +
Sbjct: 21  YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 80

Query: 315 NF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
            F          + + L V D+++  ++D +G   +PL ++   +      DL
Sbjct: 81  LFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFML- 470
             L V + +AQ+    +    ++P+ +I     +  + +TK  +KN +P W E F F   
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 471 -EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521
             E      L+++V             + +G + I L+ V   +       L
Sbjct: 86  PYEKVVQRILYLQVLDY----DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  118 bits (298), Expect = 7e-32
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           Y      L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++
Sbjct: 29  YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 88

Query: 315 NFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
            F V   +   + + +AVYD+++  KHD +G   VP+  +     + +  DL 
Sbjct: 89  TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 18/114 (15%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFMLE 471
             L+V + +A +   ++    ++PY ++     + ++ +TK  +K  +P + E+F F + 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 472 EPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 524
                 + L + V             + +G   + ++ V       E   L  +
Sbjct: 94  YSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  118 bits (297), Expect = 2e-31
 Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 8/153 (5%)

Query: 235 ANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL 294
            N+Y    +     L    +       L + V+ A   + K       PYV++ +     
Sbjct: 12  ENLYFQGMSDSGSQLGSMGSLTMK-SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS- 69

Query: 295 PSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 354
             KKT   +   +P+W +     V       +   V+  + +     +G   + + E   
Sbjct: 70  --KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYET-L 124

Query: 355 EEPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEF 386
           +  ++K  +++  + L  D +  ++ G L +  
Sbjct: 125 KSNNMKLEEVVVTLQLGGDKEPTETIGDLSICL 157

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 74.9 bits (184), Expect = 5e-16
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 20/146 (13%)

Query: 403 SQTVQKAPENTPAGGGLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHVKKNRD 459
               Q     +      L + V  A+  E K      +PY  +   G+ +KT+       
Sbjct: 21  DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNS 80

Query: 460 PRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINE 517
           P+W++    ++       +LH  V S  +    L     LG   +++ + +   N ++ E
Sbjct: 81  PKWKQPLTVIVTP---VSKLHFRVWSHQT----LKSDVLLGTAALDIYETLKSNNMKLEE 133

Query: 518 KYHLIDSKN--------GRIQIELQW 535
               +            G + I L  
Sbjct: 134 VVVTLQLGGDKEPTETIGDLSICLDG 159

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  116 bits (293), Expect = 4e-31
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y +    L   +++A  LK  D  G +DPYVKL +     K    +T       NP WNE
Sbjct: 24  YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNE 83

Query: 313 EYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 368
              +   T  D + + + ++V D ++ G ++ +G     LK+L   +     + L + +
Sbjct: 84  TLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI 142

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
              L   +  A+    ++     +PY ++       +  + +TK ++  R+P W E  Q+
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87

Query: 469 ML--EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521
               EE      L + VC            E +G    +L  + +N+R N    L
Sbjct: 88  HGITEEDMQRKTLRISVCDE----DKFGHNEFIGETRFSLKKLKANQRKNFNICL 138

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  115 bits (290), Expect = 1e-30
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 22/142 (15%)

Query: 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYN 315
            +    + + VV A  L+ KD  G+SDPYV +++ + K   K+T   + NLNP W E ++
Sbjct: 13  SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFH 69

Query: 316 FTVRDPESQAVELAVYDW-----------EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
           F   +  S  +++ V D             +    D +G  ++ ++ L+ E      LD 
Sbjct: 70  FECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLD- 127

Query: 365 LKNMDLNDGQNEKSRGQLVVEF 386
                          G + +  
Sbjct: 128 ------KRTDKSAVSGAIRLHI 143

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 15/146 (10%)

Query: 402 ESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNR 458
           E    Q   + T      + + V  AQ ++ K  T   +PY  +     +++TK +  N 
Sbjct: 1   EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60

Query: 459 DPRWEEEFQFMLEEPPTNDRLHVEV-------CSVSSRIGLLHPKETLGYIDINLSDVVS 511
           +P WEE F F       +DR+ V V        S   +       + LG   I +  +  
Sbjct: 61  NPVWEENFHFECHNS--SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG 118

Query: 512 NKRIN---EKYHLIDSKNGRIQIELQ 534
              +    +K     + +G I++ + 
Sbjct: 119 EMDVWYNLDKRTDKSAVSGAIRLHIS 144

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  114 bits (288), Expect = 3e-30
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           Y      L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++
Sbjct: 37  YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 96

Query: 315 NFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
            F V   +   + + +AVYD+++  KHD +G   VP+  +     + +  DL 
Sbjct: 97  TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 24/180 (13%), Positives = 60/180 (33%), Gaps = 36/180 (20%)

Query: 353 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412
           +P         L   ++  + + E+  G+L     Y     +                  
Sbjct: 2   SPGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQ------------------ 43

Query: 413 TPAGGGLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEF 466
                  L+V + +A +   ++    ++PY ++     + ++ +TK  +K  +P + E+F
Sbjct: 44  -------LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 96

Query: 467 QFMLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525
            F +       + L + V             + +G   + ++ V       E   L  ++
Sbjct: 97  TFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  119 bits (299), Expect = 1e-28
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 249 LDPSKAYRR---PVGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVK 302
           +DP +             V V++A  + K    D+L   DPYV+L I+      K+T   
Sbjct: 4   IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63

Query: 303 HKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
           + ++NP WNE + F +   +   +E+ + D   V   + +G     +  +   E      
Sbjct: 64  NNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPF 122

Query: 363 DLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEED 395
              +  ++    + +      + F      +E 
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEK 155

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 418 GLLVVIVHEAQDVEGKHH------TNPYARILFRG---EERKTKHVKKNRDPRWEEEFQF 468
               V+V  A  V            +PY  +         ++T+H   + +P W E F+F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 469 MLEEPPTNDRLHVEVCS 485
           +L+    N  L + +  
Sbjct: 78  ILDPNQEN-VLEITLMD 93

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  109 bits (273), Expect = 3e-28
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT 317
            +L V V  A NL   D  G SDPYVKLK+  D      +KT     +LNPEWNE + F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 318 VRDPESQAV-ELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
           +++ +      + ++DW+   ++D MG     + EL      
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 132

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
             +L+V+V +A++   ++    ++PY ++          ++KTK +K + +P W E F+F
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 469 MLEEPPTNDRLHVEVCS--VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 526
            L+E   + RL VE+    ++SR       + +G +   +S+ +    ++  + L+  + 
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSR------NDFMGSLSFGISE-LQKAGVDGWFKLLSQEE 142

Query: 527 GRIQ 530
           G   
Sbjct: 143 GEYF 146

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score =  105 bits (264), Expect = 6e-27
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 246 VPILDPSKAYRRPVGILHVKVVKAMNLKKKDL----------LGASDPYVKLKITEDKLP 295
           VP    S    +  G L V++ +A+ L+                  DPY+ + +  D++ 
Sbjct: 15  VPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVR 72

Query: 296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
             +T+ K K   P +NEE+   V   +   +ELAV+    +G    +    +  +EL   
Sbjct: 73  VGQTSTKQKTNKPTYNEEFCANV--TDGGHLELAVFHETPLGYDHFVANCTLQFQELLRT 130

Query: 356 EPSVKTLDLLKNMD 369
             +  T +   +++
Sbjct: 131 TGASDTFEGWVDLE 144

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 23/134 (17%)

Query: 418 GLLVVIVHEAQD-------------VEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWE 463
           G L V + EA                +G    +PY  +        +T   +K   P + 
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88

Query: 464 EEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKY-HLI 522
           EEF   + +      L + V    + +G       +    +   +++     ++ +   +
Sbjct: 89  EEFCANVTDG---GHLELAVFH-ETPLG---YDHFVANCTLQFQELLRTTGASDTFEGWV 141

Query: 523 D-SKNGRIQIELQW 535
           D    G++ + +  
Sbjct: 142 DLEPEGKVFVVITL 155

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  101 bits (252), Expect = 1e-25
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 258 PVGILHVKVVKAMNLKKKDL-----------LGASDPYVKLKITEDKLPSKKTTVKHKNL 306
             G+L +K+ +A++LK                   DPY+ L +  D     +T  K K  
Sbjct: 4   FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTN 61

Query: 307 NPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
           +P W++E+   V +     +ELAV+    +G  D +    +  +EL          
Sbjct: 62  SPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 28/140 (20%)

Query: 418 GLLVVIVHEAQ-----DVEGKHHTN---------PYARILFRGEE-RKTKHVKKNRDPRW 462
           GLL + + EA          +             PY  +        +T   +K   P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYH 520
            +EF   +       ++ + V    + IG     + +    I   +++ N  +   +   
Sbjct: 66  HDEFVTDVCNG---RKIELAVFH-DAPIG---YDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 521 LIDSKNGRI--QIELQWRTA 538
           L     G++   I+L   + 
Sbjct: 119 L--EPEGKVYVIIDLSGSSG 136

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
           Y        V + +A  L   D     SDPY+K+ I  +K    KT V  K L+P ++E 
Sbjct: 17  YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76

Query: 314 YNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLLKN 367
           + F           A+   +  +++  + D +G  ++PL  +   E   +   +++  
Sbjct: 77  FTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 18/121 (14%)

Query: 418 GLLVVIVHEAQDV----EGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFML 470
              VV + EA+ +    E    ++PY ++     +  + KT+ ++K  DP ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF-- 79

Query: 471 EEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDV-VSNKRINEKYHLIDSK 525
              P        LH  + S           + +G + I LS + +S  ++     +I   
Sbjct: 80  YGIPYTQIQELALHFTILSF----DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135

Query: 526 N 526
           +
Sbjct: 136 S 136

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y      + V ++KA NLK  D+ G SDPYVK+ +     ++  KKT  K +NLNP +NE
Sbjct: 11  YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 70

Query: 313 EYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
            + F +         + + V D +++ ++D +G   +  K    E
Sbjct: 71  SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 13/101 (12%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
             ++V + +A++   ++    ++PY ++       R E++KT   K+N +P + E F F 
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 470 LEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDV 509
           +      +  + + V         L   + +G I ++    
Sbjct: 76  IPTEKLRETTIIITVMDKDK----LSRNDVIGKIYLSWKSG 112

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 93.6 bits (233), Expect = 6e-23
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK-KTTVKHKNLNPEWNEE 313
           Y      L V  ++A+     +  G  D YV+  +       + +T +K + L+  W E 
Sbjct: 21  YDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEG 77

Query: 314 YNFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
               +   +  +  + L +   ++  +H   G   + L   +    + +  +L
Sbjct: 78  LVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 9/107 (8%)

Query: 420 LVVIVHEAQDVEGKHHTNPYARILF----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPT 475
           L V   EA         + Y +          E +T   K+     WEE     L E   
Sbjct: 28  LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 476 NDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521
               L + + +              G + + L          +   L
Sbjct: 88  PTATLTLTLRTC----DRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 93.6 bits (233), Expect = 7e-23
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 14/120 (11%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----------KKTTVKHKNLNP 308
           G L + +++A NL  +D  G SDP+VK+ +   +              ++T    K+LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 309 EWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
           EWN+   +     E    + +E+ V+D+++   +D +G  ++ L   +  + + +   L 
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 23/123 (18%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARI--------------LFRGEERKTKHVKKNRDP 460
           G L++ + +A++    +   +++P+ ++                   +R+TK+V+K+ +P
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 461 RWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK 518
            W +   +     E      L V V             + LG + I+LS           
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDY----DRFSSNDFLGEVLIDLSSTSHLDNTPRW 133

Query: 519 YHL 521
           Y L
Sbjct: 134 YPL 136

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 94.0 bits (234), Expect = 7e-23
 Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITED--KLPSKKTTVKHKNLNPEWN 311
           Y +    L V V +   L   D     S+PYVK  +  D  +   +KT++K   +NP ++
Sbjct: 18  YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYD 77

Query: 312 EEYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
           E   + +       + ++ +V+   + G++  +G   + +     ++     L L
Sbjct: 78  ETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 418 GLLVVIVHEAQD----VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
             LVV V E        E K  +NPY +        R  +RKT   +   +P ++E  ++
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 469 MLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 527
            + E     R L   V       G       LG  +I +     +K+++    L    + 
Sbjct: 83  EIPESLLAQRTLQFSVWHH----GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138

Query: 528 RIQIELQWR 536
             +      
Sbjct: 139 ESEGHHHHH 147

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 92.1 bits (229), Expect = 3e-22
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 255 YRRPVGILHVKVVKAMNLK-------KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLN 307
           Y      L V+V++A +L         +  +  S+PYVK+ +  D+  SK+T VK K   
Sbjct: 21  YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQK 80

Query: 308 PEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
           P + E Y F +   E   + + L V D+++  +H  +G   VPL E+   +       L
Sbjct: 81  PVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 418 GLLVVIVHEAQD----------VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEE 464
             L V V EA+D           +   H+NPY +I     +   ++T   +K + P +EE
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 465 EFQFMLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 523
            + F +       R L + V               +G + + L +V   K  +    LI 
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDK----FSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141

Query: 524 SK 525
           S 
Sbjct: 142 SG 143

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 92.5 bits (230), Expect = 3e-22
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 4/105 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y    G L V +++A NLKK D+ G SDPYVK+ + ++  +L  KKTT+K   LNP +NE
Sbjct: 20  YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79

Query: 313 EYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
            ++F V   + Q V   + V D++++GK+D +G   V       E
Sbjct: 80  SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
           G L V++ EA++   ++    ++PY +I       R +++KT   K   +P + E F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 470 LEEPPTNDR-LHVEVC 484
           +         + V V 
Sbjct: 85  VPFEQIQKVQVVVTVL 100

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 91.6 bits (228), Expect = 5e-22
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y+     L V V+KA +L K D+ G SDPYVK+ +     ++  KKT VK    N  +NE
Sbjct: 25  YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 84

Query: 313 EYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
            + F +     + +  E  V D E+  +++ +G  V+        
Sbjct: 85  LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 129

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 13/99 (13%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
             L V+V +A+     +    ++PY ++       R  ++KT   K   +  + E F F 
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 470 LEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLS 507
           +      +  +   V   S R       E +G + +  +
Sbjct: 90  IPCESLEEISVEFLVLD-SERGS---RNEVIGRLVLGAT 124

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y    G L V +++ ++L   D  G SDP+VKL +  D  K    KT +K K LNPE+NE
Sbjct: 32  YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 91

Query: 313 EYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
           E+ + ++  +   ++++++V+D++    +D +G   + +      
Sbjct: 92  EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 136

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 18/127 (14%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
           G L+V +        ++   +++P+ ++       +  + KT+  KK  +P + EEF + 
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 470 LEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGR 528
           ++      + L + V             + +G   + +S     +R+   Y  + +K+ +
Sbjct: 97  IKHSDLAKKSLDISVWD-YDIGK---SNDYIGGCQLGISA--KGERLKHWYECLKNKDKK 150

Query: 529 IQIELQW 535
           I+   +W
Sbjct: 151 IE---RW 154

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 90.2 bits (224), Expect = 2e-21
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 260 GILHVKVVKAMNLKKKDL-LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNF 316
           G L V+V++A +L +K        PYVK+ + E+   +  KKT +  K L+P + +   F
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 317 TVRDPESQAVELAVY-DWEQVGKHDKMGMNVVPLKELTPEEP 357
               P+ + +++ V+ D+ ++     MG+  + L+EL     
Sbjct: 90  DE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSM 130

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 417 GGLLVVIVHEAQDV----EGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQ 467
            G L V V  A+ +      K    PY ++          ++KT+  +K  DP +++   
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 468 FMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521
           F  +E P    L V V     R+     K  +G   I L ++  +  +   Y L
Sbjct: 89  F--DESPQGKVLQVIVWGDYGRMD---HKCFMGVAQILLEELDLSSMVIGWYKL 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 89.3 bits (222), Expect = 3e-21
 Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE 312
           + +    L V ++ A +L  ++     +PYVK+    D+     ++T    K L P+WN+
Sbjct: 16  FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 75

Query: 313 EYNFTVRDPE---SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEE 356
            + ++         + +E+ ++D  +V + +   +G  ++ L+    ++
Sbjct: 76  TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 124

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
           G  L+V +  A+D    E     NPY +I F        +R+TK VKK  +P+W + F +
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 469 MLEEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 524
                   +     L + +             E LG I I L   + +      Y L   
Sbjct: 80  --SPVHRREFRERMLEITLW--DQARVREEESEFLGEILIELETALLD-DEPHWYKLQTH 134

Query: 525 KNG 527
            +G
Sbjct: 135 DSG 137

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 87.7 bits (218), Expect = 5e-21
 Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE 312
           + +    L V ++ A +L  ++     +PYVK+    D+     ++T    K L P+WN+
Sbjct: 13  FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 72

Query: 313 EYNFTVRDPE---SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEE 356
            + ++         + +E+ ++D  +V + +   +G  ++ L+    ++
Sbjct: 73  TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 121

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 16/110 (14%)

Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
           G  L+V +  A+D    E     NPY +I F        +R+TK VKK  +P+W + F +
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 469 MLEEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 514
                   +     L + +    +R+      E LG I I L   + +  
Sbjct: 77  --SPVHRREFRERMLEITLWD-QARVR-EEESEFLGEILIELETALLDDE 122

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 87.7 bits (218), Expect = 6e-21
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT 317
           G L + V+   +L  +D     +PYVK  +  D  K   +KT +  K  NP +NE   ++
Sbjct: 20  GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78

Query: 318 V---RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
                    + ++L+V   E + ++  +G   +PLK+    + +VK   L 
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 418 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 470
           G L ++V   +D   E     NPY +        +  +RKTK  +K R+P + E   +  
Sbjct: 20  GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY-- 77

Query: 471 EEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521
                       L + V S  S    L     LG I + L D   +K   + Y L
Sbjct: 78  SGYSKETLRQRELQLSVLSAES----LRENFFLGGITLPLKDFNLSKETVKWYQL 128

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 87.8 bits (218), Expect = 7e-21
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           +      L V V    NL      G SDPYV++ +  D  +   +KT V  K LNP +++
Sbjct: 19  HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQ 77

Query: 313 EYNFTVRDPE--SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDLLKN 367
            ++F+V  PE   + +++AV +       DK  +G  +V L      +   +  DL ++
Sbjct: 78  SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 418 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 470
             L+V+VH  ++     +  ++PY R+       R   RKT   KK  +P +++ F F +
Sbjct: 24  NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83

Query: 471 EEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 523
             P    R L V V +    +     K  LG + + L+     K   + Y L +
Sbjct: 84  SLPEVQRRTLDVAVKNSGGFLS--KDKGLLGKVLVALASEELAKGWTQWYDLTE 135

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 12/108 (11%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWN 311
           Y        + +++  NL            +++ +   +E      +T     +    +N
Sbjct: 38  YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFN 97

Query: 312 EEYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 357
           E +  ++  P    + + + V   ++    + +G   + L E+     
Sbjct: 98  EVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGE 145

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF------RGEERKTKHVKKNRDPRWEEEFQF 468
               +++ +  +   +  +       R+             +T+ +  +    + E F  
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 469 MLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK-YHLI 522
            +  P  + + L V+VC+        H +E LG   I+L++V  +   + + Y+L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDR----SHLEECLGGAQISLAEVCRSGERSTRWYNLL 154

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
                 +L + +++   L  K   G  DPYVK+ +  +  +L  +KT       +P ++E
Sbjct: 22  IDAQDRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHE 80

Query: 313 EYNFTVRDPESQ-AVELAVYDWEQVGKHDK-MGMNVVPLKEL 352
            + F V++ + Q  + + V++     +    +G     +K L
Sbjct: 81  HFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 418 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 470
            +L++ + E +    +     +PY +I       R   +KT+ V   RDP + E F F +
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 471 EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK-YHLIDSKNGRI 529
           +E     RL V V    +R         +G +   +  +++  +     Y+L+    GR 
Sbjct: 87  QEEDDQKRLLVTVW---NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRT 143

Query: 530 Q-IELQWR 536
           + +++  R
Sbjct: 144 KHLKVARR 151

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 66.2 bits (161), Expect = 3e-13
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
            +L V V KA     ++     + YV LK+       K TT+  +   P W +++ F + 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 57

Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
             +   + + V++ + +     +G   +PL+ +
Sbjct: 58  RLDLG-LTVEVWN-KGLIWDTMVGTVWIPLRTI 88

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
            LL V V +A+    +   N Y  +  +  +  T  V+ +  P WE++F F +     + 
Sbjct: 5   SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRL--DL 61

Query: 478 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDV 509
            L VEV +       L     +G + I L  +
Sbjct: 62  GLTVEVWNKG-----LIWDTMVGTVWIPLRTI 88

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 71.1 bits (173), Expect = 3e-13
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 250 DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPE 309
                 +R +  L V   +A +L       A+D Y+K+     +    +T V   N NP 
Sbjct: 384 QDCCPRQRGLAHLVVSNFRAEHLWGDYT-TATDAYLKVFFGGQE---FRTGVVWNNNNPR 439

Query: 310 WNEEYNF-TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 350
           W ++ +F  V       + + V+D +     D +G       
Sbjct: 440 WTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 56.1 bits (134), Expect = 1e-08
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 410 PENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQ 467
                 G   LVV    A+ + G     T+ Y ++ F G+E +T  V  N +PRW ++  
Sbjct: 386 CCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMD 445

Query: 468 FMLEEPPTNDRLHVEV 483
           F      T   L V+V
Sbjct: 446 FENVLLSTGGPLRVQV 461

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
            +L V V KA     ++     + YV LK+       + TT+  +   P W +++ F + 
Sbjct: 14  SLLCVGVKKAKFDGAQEKF---NTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66

Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
             +   + + V++ + +     +G   +PL+ +
Sbjct: 67  RLDLG-LTVEVWN-KGLIWDTMVGTVWIPLRTI 97

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 409 APENTPAGGG---LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEE 465
           +P  +  GGG   LL V V +A+    +   N Y  +  +  E  T  V+ +  P WE++
Sbjct: 2   SPGISGGGGGILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQD 60

Query: 466 FQFMLEEPPTNDRLHVEV 483
           F F +     +  L VEV
Sbjct: 61  FMFEINRL--DLGLTVEV 76

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 63.4 bits (153), Expect = 9e-11
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 262 LHVKVVKAMNLKKKDLLGAS--DPYVKLKI---TEDKLPSKKTTVKHKNLNPEWNEEYNF 316
           L V+++    L K +    S  DP V ++I     D    +   + +   NP W+ E+ F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558

Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 354
            V  P+   V   V D++   K+D +G + +P   L  
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 53.5 bits (127), Expect = 9e-08
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 14/187 (7%)

Query: 251 PSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL--- 306
           P+K   RR   +L + +++A  L  K        Y +L +  D +   +TT K ++    
Sbjct: 1   PNKDNSRRVDNVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGD 53

Query: 307 NPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK---MGMNVVPLKELTPEEPSVKTLD 363
              W E + F               D ++  K DK   +G+  VP+  L     + +   
Sbjct: 54  TVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP 113

Query: 364 LLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVI 423
           +             S G            +   P    +++    +             +
Sbjct: 114 VTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYV 173

Query: 424 VHEAQDV 430
            +  + +
Sbjct: 174 TNHYRML 180

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)

Query: 420 LVVIVHEAQDVEGKHHTNPYARILFRGEERK----TKHVKKNRDPRWEEEFQFMLEEPPT 475
           L + + EA+++  K     Y  +                       W E F+F     P 
Sbjct: 13  LKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEF--NNLPA 68

Query: 476 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 527
              L + +   S +         +G + + ++ +       + Y +      
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 228 ELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKL 287
           + IK          K                +G L V V++A  LK     G S+PY ++
Sbjct: 355 QKIKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEI 414

Query: 288 KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVV 347
            +      S  T      LNP+WN    F ++D     + L ++D +Q    D +G   +
Sbjct: 415 SMGSQ---SYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471

Query: 348 PLKELTPEEPSV 359
           P+ ++  E+ S 
Sbjct: 472 PVAKIRTEQESK 483

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 68/532 (12%), Positives = 137/532 (25%), Gaps = 159/532 (29%)

Query: 31  FQPTDVKNPEIRPLVERDSETLQQMLP--EIPLWVKCPDYDRVDWLNKFLELMWPYLDKA 88
           F+   V N + + +     +  + +L   EI   +   D       +  L L W  L K 
Sbjct: 25  FEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAV-----SGTLRLFWTLLSKQ 75

Query: 89  ICKTAKNIAK-----------PIIAEQI------PKYKIESVEFETLTLGTLPPTFQGMK 131
                + + +             +   I      P         +   L      F    
Sbjct: 76  -----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 132 VYVTDEKELIMEPCLKWAANPNVTI-GVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFP 190
           V        + +  L+     NV I GV   G K     V L V    ++  K       
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-K---TWVALDVCLSYKVQCK-----MD 181

Query: 191 CFANIY-VSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPIL 249
               I+ ++L                           + +++  +  +            
Sbjct: 182 F--KIFWLNL---------------------KNCNSPETVLE-MLQKLLYQIDPNWTSRS 217

Query: 250 DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVK-LKITEDKLPSKKTTVKHKNLNP 308
           D S   +  +  +          + + LL  S PY   L +  +                
Sbjct: 218 DHSSNIKLRIHSI--------QAELRRLL-KSKPYENCLLVLLN---------------- 252

Query: 309 EWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 368
                    V++ +          W           N+           S K L   +  
Sbjct: 253 ---------VQNAK---------AWN--------AFNL-----------SCKILLTTRFK 275

Query: 369 DLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEE--SQTVQKAPENTPAGGGLLVVIVHE 426
            + D  +  +   + ++        +++     +      Q  P          + I+ E
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 427 AQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486
           +   +G    + +  +     ++ T  ++             +    P   R   +  SV
Sbjct: 336 SIR-DGLATWDNWKHVNC---DKLTTIIES-----------SLNVLEPAEYRKMFDRLSV 380

Query: 487 ---SSRIGLLHPKETLGYIDINLSDVVSNKRINE--KYHLI--DSKNGRIQI 531
              S+ I    P   L  I  ++        +N+  KY L+    K   I I
Sbjct: 381 FPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 238 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKL 294
           ++     +       +        L + V+    L ++        YV++++     D  
Sbjct: 656 FMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSERS----VRTYVEVELFGLPGDPK 711

Query: 295 PSKKTTVKHKN--LNPEWNEEY--NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 350
              +T +      +NP W EE      +  PE  ++ +AV +      +  +G  ++P+ 
Sbjct: 712 RRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME----EGNKFLGHRIIPIN 767

Query: 351 ELTP 354
            L  
Sbjct: 768 ALNS 771

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Length = 816

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 15/124 (12%)

Query: 238 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK 297
           ++            S       G + +K++ A  L  K +      YV++++      + 
Sbjct: 628 FMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTV 683

Query: 298 K-----TTVKHKNLNPEWNEEYNF--TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 350
           +       +++  ++P ++E+      V  P+   V + V +         +G  V+PL 
Sbjct: 684 RKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE----ENGKFIGHRVMPLD 739

Query: 351 ELTP 354
            + P
Sbjct: 740 GIKP 743

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 260 GILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLP--SKKTTVKHKNLNPEWNEEYNF 316
             L + +        +   G A +PY  + + E       +    K   + P W+  ++ 
Sbjct: 10  PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69

Query: 317 TVRDPESQAVELAVYD 332
            +     + +++ V  
Sbjct: 70  HINK--GRVMQIIVKG 83

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885

 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 14/123 (11%)

Query: 238 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT---EDKL 294
           ++                      L VKV+    L  +        YV++ +     D  
Sbjct: 703 FMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTR 758

Query: 295 PSKKT-TVKHKNLNPEWNEE-YNF-TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 351
              +T T +  + NP W+EE ++F  V  P   ++ +A ++         +G  ++P+  
Sbjct: 759 RKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGG----KFVGHRILPVSA 814

Query: 352 LTP 354
           +  
Sbjct: 815 IRS 817

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	538
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.86
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.83
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.83
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.82
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.82
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.8
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.79
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.78
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.78
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.78
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.78
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.77
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.77
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.77
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.76
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.76
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.75
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.74
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.74
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.74
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.74
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.74
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.74
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.74
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.74
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.73
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.73
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.73
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.73
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.73
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.73
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.73
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.73
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.72
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.72
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.72
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.72
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.72
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.72
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.71
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.71
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.71
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.71
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.7
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.7
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.7
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.7
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.69
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.69
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.69
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.68
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.68
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.68
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.67
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.67
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.67
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.67
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.67
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.66
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.66
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.66
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.65
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.65
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.62
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.6
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.59
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.56
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.54
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.54
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.51
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.49
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.45
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.4
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.33
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.31
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.3
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.24
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.16
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.15
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.12
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.12
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.99
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.93
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.92
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.92
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.9
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.88
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.82
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	92.19
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	91.34
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	90.72
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	90.03
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	88.49
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	85.7
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	84.24

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=1.2e-33  Score=278.89  Aligned_cols=237  Identities=26%  Similarity=0.428  Sum_probs=197.5

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....|.|.|+|++|++|+.+|..|.+||||++++++.....++|+++++++||.|||+|.|.+...  ....|.|+|||
T Consensus        14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d   93 (284)
T 2r83_A           14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD   93 (284)
T ss_dssp             EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence            4456799999999999999999889999999999986544567999999999999999999998643  35799999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCCC
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN  412 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~  412 (538)
                      ++.+++|++||++.++|.++..+.....|++|.....    ......|+|.+++.|.|                      
T Consensus        94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~----~~~~~~G~i~l~l~~~p----------------------  147 (284)
T 2r83_A           94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK----EEQEKLGDICFSLRYVP----------------------  147 (284)
T ss_dssp             CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS----CCCCCCCEEEEEEEEET----------------------
T ss_pred             CCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc----ccccccccEEEEEEecC----------------------
Confidence            9999999999999999999998877888888754211    12346799999999985                      


Q ss_pred             CCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC--C---eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEE
Q 009307          413 TPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEV  483 (538)
Q Consensus       413 ~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V  483 (538)
                         ..+.|.|.|++|++|+..   +.+||||++++.  +   ..++|++++++.||+|||.|.|.+..... ...|.|+|
T Consensus       148 ---~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V  224 (284)
T 2r83_A          148 ---TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV  224 (284)
T ss_dssp             ---TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEE
T ss_pred             ---cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEE
Confidence               367899999999999863   578999999984  2   34699999999999999999999875422 23799999


Q ss_pred             EEcccCccCCCCCceeEEEEEechhh----------cc--cceeceEEEeCCC
Q 009307          484 CSVSSRIGLLHPKETLGYIDINLSDV----------VS--NKRINEKYHLIDS  524 (538)
Q Consensus       484 ~d~~~~~g~~~~d~~lG~~~i~l~~l----------~~--~~~~~~~~~L~~~  524 (538)
                      ||++.    ++++++||++.++++.+          +.  +....+||+|...
T Consensus       225 ~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          225 LDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             EECCS----SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             EeCCC----CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            99986    67899999999999763          22  2456789999764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=8.3e-33  Score=274.13  Aligned_cols=236  Identities=27%  Similarity=0.446  Sum_probs=189.1

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....+.|.|+|++|++|+.+|..|.+||||++++.+.....++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d   94 (296)
T 1dqv_A           15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   94 (296)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence            4557899999999999999999899999999999964433457999999999999999999998643  24689999999


Q ss_pred             ccCCCCCcccEEEEEe-CccCCC-CCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCC
Q 009307          333 WEQVGKHDKMGMNVVP-LKELTP-EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAP  410 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~-l~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~  410 (538)
                      +|.+++|++||++.++ +.++.. ......|+++....     ......|+|.+++.|.|                    
T Consensus        95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~vsl~y~~--------------------  149 (296)
T 1dqv_A           95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SEKADLGELNFSLCYLP--------------------  149 (296)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS-----SCCSCCCEEEEEEEEET--------------------
T ss_pred             cCCCCCCceEEEEEeccccccccCCccceeeecccccc-----ccccccceEEEEEEecc--------------------
Confidence            9999999999999996 444443 22334566653211     12456799999999975                    


Q ss_pred             CCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC--C---eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEE
Q 009307          411 ENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHV  481 (538)
Q Consensus       411 ~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v  481 (538)
                           ..|.|.|+|++|++|+..   +.+||||++++.  +   .+++|++++++.||+|||.|.|.+..... ...|.|
T Consensus       150 -----~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i  224 (296)
T 1dqv_A          150 -----TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI  224 (296)
T ss_dssp             -----TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCC
T ss_pred             -----ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEE
Confidence                 368999999999999764   568999999996  3   45799999999999999999999875422 237999


Q ss_pred             EEEEcccCccCCCCCceeEEEEEechhhcc-------------cceeceEEEeCCC
Q 009307          482 EVCSVSSRIGLLHPKETLGYIDINLSDVVS-------------NKRINEKYHLIDS  524 (538)
Q Consensus       482 ~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~-------------~~~~~~~~~L~~~  524 (538)
                      +|||++.    ++++++||++.++++++..             +....+|+.|...
T Consensus       225 ~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          225 AVVDYDC----IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             EEEECCS----SSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             EEEeCCC----CCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            9999986    6789999999999987643             2355678887654

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=8.2e-21  Score=166.18  Aligned_cols=129  Identities=29%  Similarity=0.482  Sum_probs=109.8

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEEEEec
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDW  333 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~  333 (538)
                      ...|.|.|+|++|++|+..+. |.+||||+++++++.   ++|++++++.||+|||+|.|.+...   ....|.|+|||+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            457999999999999999998 999999999999754   6999999999999999999999754   368999999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK  392 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (538)
                      +..++|++||++.+++.++..+.....|+.+......   .+....|+|+++++|.|..
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~---~~~~~~G~l~l~~~~~p~~  135 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQDTGATIDLVIGYDPPS  135 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT---TCCEEEEEEEEEEEECCCB
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC---CCCCCCCEEEEEEEEECCC
Confidence            9999999999999999999888777778773322221   1245679999999999853

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.85  E-value=4e-21  Score=167.28  Aligned_cols=127  Identities=28%  Similarity=0.512  Sum_probs=110.4

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      ...+.|.|+|+|++|++|+..+..|.+||||+++++++.   .+|++++ ++.||.|||+|.|.+.+ ....|.|+|||+
T Consensus         5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~   80 (136)
T 1wfj_A            5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDK   80 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCS
T ss_pred             CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEEC
Confidence            456899999999999999999988999999999998764   5899998 89999999999999987 478999999999


Q ss_pred             cCCCCCcccEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccC
Q 009307          334 EQVGKHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE  393 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  393 (538)
                      +.+++|++||++.+++.++. .+.....|+++.+        +.+..|+|+++++|.|...
T Consensus        81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECCS
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCCC
Confidence            99999999999999999994 4444566777751        3578999999999999643

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=1.9e-20  Score=166.41  Aligned_cols=129  Identities=34%  Similarity=0.582  Sum_probs=102.5

Q ss_pred             CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEe
Q 009307          256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD  332 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d  332 (538)
                      ....|.|+|+|++|++|+.+|..|.+||||++++.+..   ...++|++++++.||+|||+|.|.+... ...|.|+|||
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d   94 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD   94 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence            45789999999999999999988999999999998532   2357999999999999999999999764 6799999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCe------EEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPS------VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      ++..++|++||++.+++.++..+...      ..|+.|....     ......|+|+++++|.|
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence            99999999999999999999876543      4677764321     12467899999999986

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=2.5e-20  Score=159.97  Aligned_cols=120  Identities=22%  Similarity=0.364  Sum_probs=102.5

Q ss_pred             eeEEEEEEEeecCCccC---CCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccC
Q 009307          259 VGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ  335 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  335 (538)
                      .|.|.|+|++|++|+.+   +..|.+||||++++++.....++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   566899999999998754455799999999999999999999976667899999999998


Q ss_pred             CCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      . +|++||++.++|.++..+.....|++|.          ....|+|++++...
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~----------~~~~g~i~~~le~~  124 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECC
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcC----------CCceEEEEEEEEeC
Confidence            7 4899999999999999888888898873          24567777776543

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=166.18  Aligned_cols=119  Identities=24%  Similarity=0.348  Sum_probs=102.3

Q ss_pred             CCCCeeEEEEEEEeecCCccCCC----------CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCC
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDL----------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQ  324 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~  324 (538)
                      .....|.|+|+|++|++|+.+|.          .|.+||||++++++++  ..+|+++++|+||+|||+|.|.+.+  .+
T Consensus        24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~--~~kT~v~~ktlnP~WNE~F~f~v~~--~~   99 (157)
T 2fk9_A           24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR--VGQTSTKQKTNKPTYNEEFCANVTD--GG   99 (157)
T ss_dssp             CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEE--EC
T ss_pred             hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEe--eEEeeecCCCCCCccCcEEEEEcCC--CC
Confidence            44578999999999999998873          2679999999998754  3589999999999999999999975  46


Q ss_pred             EEEEEEEeccCCCCCcccEEEEEeCccCCCC----CCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          325 AVELAVYDWEQVGKHDKMGMNVVPLKELTPE----EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       325 ~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      .|.|+|||+|.+++|++||++.++++++..+    ...+.|++|.            ..|+|+++++|.
T Consensus       100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~~~  156 (157)
T 2fk9_A          100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEEEC
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEEEE
Confidence            8999999999999999999999999998854    5567888872            279999999874

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=2.7e-20  Score=161.38  Aligned_cols=126  Identities=31%  Similarity=0.501  Sum_probs=107.7

Q ss_pred             cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      .+..+.|.|.|+|++|++|+.+|..|.+||||+++++++.   .+|++++++.||.|||+|.|.+.+. ...|.|+|||+
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~   82 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE   82 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence            4556889999999999999999988999999999998764   5999999999999999999999865 57899999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      +..++|++||++.+++.++..+..  .|++|....     ......|+|+++++|..
T Consensus        83 d~~~~~~~lG~~~i~l~~l~~~~~--~w~~L~~~~-----~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           83 DGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNKD-----LEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             ETTEEEEECCBCEEEGGGCCSSCC--EECCCBCSC-----TTSCCSSEEEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEEHHHccCCCc--eEEEeecCC-----CCCccceEEEEEEEEEe
Confidence            999899999999999999977543  566664321     12467899999999863

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.82  E-value=1.1e-19  Score=165.43  Aligned_cols=129  Identities=33%  Similarity=0.547  Sum_probs=100.3

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC---CeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL---PSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      ...|.|+|+|++|++|+.++..|.+||||++++.+...   ..++|+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence            46899999999999999999889999999999986332   356999999999999999999999754 57999999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCe-E-----EEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPS-V-----KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      +.+++|++||++.++|.++..+... +     .|+.|....     ...+..|+|++++.|.|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEeC
Confidence            9999999999999999999876443 1     577764321     124578999999999997

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.82  E-value=3.8e-20  Score=161.06  Aligned_cols=118  Identities=25%  Similarity=0.403  Sum_probs=101.1

Q ss_pred             CeeEEEEEEEeecCCccCCCCCC-----------CCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEE
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGA-----------SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAV  326 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L  326 (538)
                      ..|.|+|+|++|++|+.+|..++           +||||++++++..  ..+|+++.+|+||+|||+|.|.+.+.  +.|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            46999999999999998875544           9999999997654  35899999999999999999999765  799


Q ss_pred             EEEEEeccCCCCCcccEEEEEeCccCCCCCC--eEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          327 ELAVYDWEQVGKHDKMGMNVVPLKELTPEEP--SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       327 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      .|+|||+|..++|++||++.+++.++..+..  ...|+++            ...|+|+++++|.+.
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------CCCeEEEEEEEEEec
Confidence            9999999999999999999999999987542  3677765            237999999999863

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=2e-19  Score=158.93  Aligned_cols=122  Identities=25%  Similarity=0.431  Sum_probs=103.6

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV  336 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  336 (538)
                      ...|.|+|+|++|++|+.+|..|.+||||+++++++.   ++|+++++++||.|||+|.|.+..+ .+.|.++|||++..
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDD   89 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCS
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCC
Confidence            3579999999999999999989999999999997644   5999999999999999999999776 57999999999985


Q ss_pred             -----------CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          337 -----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       337 -----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                                 ++|++||++.+++.++.  .....|++|....     ......|+|+++++|.
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT-----DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS-----TTCCCCCEEEEEEEEE
T ss_pred             ccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC-----CCCCCceEEEEEEEEE
Confidence                       78999999999999994  3456777774321     1245789999999985

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.80  E-value=7.2e-19  Score=152.09  Aligned_cols=125  Identities=23%  Similarity=0.441  Sum_probs=100.6

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG  337 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  337 (538)
                      ....|+|+|++|++|+.+|..|.+||||++++++.. ..++|+++++++||+|||+|.|.+...  +.|.|+|||++..+
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~   79 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH   79 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence            457899999999999999999999999999997643 457999999999999999999999765  35999999999887


Q ss_pred             C---CcccEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307          338 K---HDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY  388 (538)
Q Consensus       338 ~---d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~  388 (538)
                      +   |++||++.+++.++. .......+++|... .+.  ......|+|++++++
T Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~~--~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NPS--DTDAVRGQIVVSLQT  131 (132)
T ss_dssp             SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-STT--CCCCCCSEEEEEEEE
T ss_pred             CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CCC--CCCceeEEEEEEEEc
Confidence            6   899999999999883 22333456666432 111  124578999999875

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=2e-18  Score=150.85  Aligned_cols=120  Identities=23%  Similarity=0.485  Sum_probs=104.5

Q ss_pred             CCceEEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCc
Q 009307          415 AGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRI  490 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~  490 (538)
                      ...|.|.|+|++|++|+..  +.+||||++++++++++|++++++.||+|||.|+|.+....  ....|.|+|||++.  
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~--   81 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET--   81 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC--
T ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC--
Confidence            4578999999999999864  47999999999999999999999999999999999997542  24689999999986  


Q ss_pred             cCCCCCceeEEEEEechhhcccceeceEEE---eCCCC----CcEEEEEEEEEeC
Q 009307          491 GLLHPKETLGYIDINLSDVVSNKRINEKYH---LIDSK----NGRIQIELQWRTA  538 (538)
Q Consensus       491 g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~---L~~~~----~G~I~l~~~w~p~  538 (538)
                        ++++++||++.++|.++..+.....||+   |.+..    .|+|+++++|.|.
T Consensus        82 --~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           82 --IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             --SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred             --CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence              5788999999999999988777788988   65543    4999999999984

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.79  E-value=8.2e-19  Score=155.02  Aligned_cols=113  Identities=16%  Similarity=0.256  Sum_probs=99.5

Q ss_pred             CCceEEEEEEEeeecCCCC-------------CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009307          415 AGGGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH  480 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~  480 (538)
                      ...|.|+|+|.+|++|+..             +.+||||++.++++. .+|++++++.||+|||.|+|.+.+.   ..|.
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~---~~L~  102 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLE  102 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC---CEEE
Confidence            4689999999999999853             358999999998876 5999999999999999999999753   5899


Q ss_pred             EEEEEcccCccCCCCCceeEEEEEechhhccc----ceeceEEEeCCCCCcEEEEEEEEE
Q 009307          481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSN----KRINEKYHLIDSKNGRIQIELQWR  536 (538)
Q Consensus       481 v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~G~I~l~~~w~  536 (538)
                      ++|||++.    +++|++||++.|+|.++..+    ...+.||+|.  ++|+|+|+++|.
T Consensus       103 ~~V~D~d~----~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--~~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHETP----LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE--PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEECCS----SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--SSCEEEEEEEEC
T ss_pred             EEEEECCC----CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC--CCcEEEEEEEEE
Confidence            99999875    67899999999999999865    5678999996  489999999985

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=2e-18  Score=147.99  Aligned_cols=116  Identities=18%  Similarity=0.406  Sum_probs=102.2

Q ss_pred             ceEEEEEEEeeecCCCC------CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009307          417 GGLLVVIVHEAQDVEGK------HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS  487 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~  487 (538)
                      .|.|.|+|++|++|+..      +.+||||++++++   ..++|++++++.||+|||.|.|.+... ....|.++|||++
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence            68999999999999872      6899999999986   678999999999999999999999654 4568999999998


Q ss_pred             cCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEEEeC
Q 009307          488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA  538 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w~p~  538 (538)
                      .    + ++++||++.++|+++..+.....||+|.+.+.|.|+++++.-|+
T Consensus        81 ~----~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~~  126 (126)
T 1rlw_A           81 Y----V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVASS  126 (126)
T ss_dssp             S----S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCCC
T ss_pred             C----C-CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCCC
Confidence            5    3 48899999999999988888889999998778999999887653

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.78  E-value=2.4e-19  Score=159.17  Aligned_cols=111  Identities=14%  Similarity=0.153  Sum_probs=95.5

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC---ccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  329 (538)
                      +....+.|+|+|++|+||+.+|..|.+||||++++.+   ....++||+++++|+||+|||+|.|.+...  ....|.|+
T Consensus        38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~  117 (155)
T 2z0u_A           38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD  117 (155)
T ss_dssp             EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred             EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence            4456799999999999999999999999999999976   333357999999999999999999998642  25689999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCC-CCCeEEEEecc
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLL  365 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~l~  365 (538)
                      |||+|..++|++||++.++|.++.. +.....|++|.
T Consensus       118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            9999999999999999999999964 55667787763

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1e-18  Score=152.97  Aligned_cols=112  Identities=34%  Similarity=0.508  Sum_probs=97.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY  331 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~  331 (538)
                      +....+.|.|+|++|++|+.++..|.+||||++++.+.....++|++++++.||+|||+|.|.+..   .....|.|+||
T Consensus        21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  100 (141)
T 2d8k_A           21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL  100 (141)
T ss_dssp             ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence            445679999999999999999988999999999997544456799999999999999999998532   23578999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      |++.+++|++||++.+++.++..+.....|++|..
T Consensus       101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A          101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            99999999999999999999998887888998854

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=1.3e-18  Score=157.23  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=102.3

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV  336 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  336 (538)
                      ...+.|.|+|++|++|+..+..+.+||||+++++++   .++|+++++++||+|||+|.|.+..  .+.|.|+|||+|.+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~---~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ---SKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL  107 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTE---EEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCE---EeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence            357899999999999994444456999999999873   4699999999999999999999853  78999999999999


Q ss_pred             CCCcccEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          337 GKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      ++|++||++.+++.++..+..     ...|++|...     ..+....|+|.+.+.|.+.
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-----~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEEC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-----CCCCcccEEEEEEEeeeec
Confidence            999999999999999874321     2567777542     1134678999999999986

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=1.4e-18  Score=154.13  Aligned_cols=111  Identities=33%  Similarity=0.498  Sum_probs=97.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....+.|.|+|++|+||+..|..+.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  116 (152)
T 1rsy_A           37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  116 (152)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence            4456799999999999999999889999999999975444567999999999999999999988642  36899999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      ++.+++|++||++.+++.++..+.....|++|.
T Consensus       117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  149 (152)
T 1rsy_A          117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  149 (152)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence            999999999999999999998887788898874

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.77  E-value=1.1e-18  Score=153.09  Aligned_cols=111  Identities=33%  Similarity=0.498  Sum_probs=98.3

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....+.|.|+|++|++|+..+..+.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  108 (143)
T 3f04_A           29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence            4457799999999999999999889999999999965544567999999999999999999998643  35799999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      ++.+++|++||++.++|.++..+.....|++|.
T Consensus       109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  141 (143)
T 3f04_A          109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred             CCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence            999999999999999999999888888898874

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.77  E-value=2.7e-18  Score=148.77  Aligned_cols=109  Identities=25%  Similarity=0.360  Sum_probs=94.3

Q ss_pred             CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEE-eeCC--CCCEEEEEE
Q 009307          256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELAV  330 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v  330 (538)
                      +...|.|.|+|++|+||+. +..|.+||||++++.+.  ....++|+++++++||+|||+|.|. +...  ....|.|+|
T Consensus        16 ~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V   94 (134)
T 2b3r_A           16 SYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV   94 (134)
T ss_dssp             EEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred             eecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence            3456899999999999997 66789999999999543  2345799999999999999999999 7532  357999999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      ||++.+++|++||++.++|.++..+.....|++|.
T Consensus        95 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  129 (134)
T 2b3r_A           95 LSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT  129 (134)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred             EECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence            99999999999999999999999888888898874

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.76  E-value=5.8e-18  Score=147.19  Aligned_cols=118  Identities=20%  Similarity=0.421  Sum_probs=102.8

Q ss_pred             CCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009307          415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI  490 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~  490 (538)
                      ...|.|+|+|++|++|+..   +.+||||+++++++.++|++++ ++.||+|||.|.|.+.+  ....|.++|||++.  
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~--   82 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDV--   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSS--
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCC--
Confidence            4689999999999999874   5789999999999999999998 89999999999999986  35689999999985  


Q ss_pred             cCCCCCceeEEEEEechhhcc-cceeceEEEeCCC--CCcEEEEEEEEEeC
Q 009307          491 GLLHPKETLGYIDINLSDVVS-NKRINEKYHLIDS--KNGRIQIELQWRTA  538 (538)
Q Consensus       491 g~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~--~~G~I~l~~~w~p~  538 (538)
                        +++|++||++.++|.++.. ......||+|...  ..|+|+++++|.|.
T Consensus        83 --~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           83 --GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             --CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             --CCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence              6789999999999999955 4446789999622  36999999999984

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=5.2e-18  Score=147.86  Aligned_cols=111  Identities=23%  Similarity=0.428  Sum_probs=93.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEE-eeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+.+|.. |.+||||++++.+.....++|+++++++||+|||+|.|. +...  ....|.|+|
T Consensus        17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V   96 (138)
T 1ugk_A           17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence            344678999999999999999985 899999999998644456899999999999999999996 5432  246899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCe-EEEEecc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPS-VKTLDLL  365 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~l~  365 (538)
                      ||++.+++|++||++.++|.++..+... ..|+++.
T Consensus        97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~  132 (138)
T 1ugk_A           97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence            9999999999999999999999876544 5667764

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.75  E-value=5.3e-18  Score=148.60  Aligned_cols=111  Identities=25%  Similarity=0.443  Sum_probs=96.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEE-eeCC--CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~  329 (538)
                      +....+.|.|+|++|++|+.++..|.+||||++++.+.  ....++|++++++.||+|||+|.|. +...  ....|.|+
T Consensus        24 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~  103 (142)
T 2chd_A           24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS  103 (142)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence            33567999999999999999998899999999999753  2345799999999999999999998 5322  13689999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      |||++..++|++||++.+++.++..++....|+.|.
T Consensus       104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  139 (142)
T 2chd_A          104 VCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE  139 (142)
T ss_dssp             EEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred             EEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence            999999999999999999999999988888888874

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.74  E-value=2.7e-17  Score=146.00  Aligned_cols=118  Identities=22%  Similarity=0.402  Sum_probs=98.3

Q ss_pred             CCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEE
Q 009307          414 PAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVC  484 (538)
Q Consensus       414 ~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~  484 (538)
                      ....+.|+|+|++|++|+..   +.+||||++++.+      ..++|++++++.||+|||.|.|.+...  ...|.++||
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~l~~~V~   93 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ--QHRLLFEVF   93 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT--TCEEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC--CCEEEEEEE
Confidence            34689999999999999864   5789999999974      456999999999999999999999763  468999999


Q ss_pred             EcccCccCCCCCceeEEEEEechhhccccee------ceEEEeCCC-----CCcEEEEEEEEEe
Q 009307          485 SVSSRIGLLHPKETLGYIDINLSDVVSNKRI------NEKYHLIDS-----KNGRIQIELQWRT  537 (538)
Q Consensus       485 d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~L~~~-----~~G~I~l~~~w~p  537 (538)
                      |++.    ++++++||++.++|+++......      .+||+|...     ..|+|+++++|.|
T Consensus        94 d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           94 DENR----LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             ECCS----SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             ECCC----CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            9985    67899999999999999875432      489999643     3699999999987

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.74  E-value=5.3e-17  Score=170.93  Aligned_cols=176  Identities=20%  Similarity=0.250  Sum_probs=135.8

Q ss_pred             eEEEEEEcCCCC-eEEEEEEEccccccc-cchHHHHHHHHHHHHHhhhccc-----CccccccccC--------------
Q 009307          192 FANIYVSLMEKP-HVDFGLKLVGADLMS-IPGLYRFVQELIKTQVANMYLW-----PKTLEVPILD--------------  250 (538)
Q Consensus       192 ~~~~~~sf~~~P-~id~~~~~~g~~~~~-~P~l~~~i~~~i~~~l~~~~v~-----P~~~~~pi~~--------------  250 (538)
                      +..|.=|+...| -|+|.+.|+ .++.. .+.....++.++.+++.+.-.+     |..-..+.+.              
T Consensus       304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t  382 (540)
T 3nsj_A          304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVT  382 (540)
T ss_dssp             HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTB
T ss_pred             HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCc
Confidence            566667777788 559999998 55543 4566789999999999988776     4321111111              


Q ss_pred             -C-CccCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC-CCCCEEE
Q 009307          251 -P-SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PESQAVE  327 (538)
Q Consensus       251 -~-~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~-~~~~~L~  327 (538)
                       + .++.....|.|+|+|++|++|+. |..|++||||+++++++.   .+|+++++++||+|||+|.|.+.. ...+.|+
T Consensus       383 ~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~  458 (540)
T 3nsj_A          383 NQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLR  458 (540)
T ss_dssp             CGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEE
T ss_pred             ccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEE
Confidence             1 11344568999999999999998 989999999999998754   699999999999999999998653 3578899


Q ss_pred             EEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          328 LAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       328 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      |+|||+|..++||+||++.++|..    ..++.|..+             ..|+|+++++..
T Consensus       459 ~~V~D~D~~~~dD~LG~~~~~L~~----g~~~~~~~l-------------~~G~l~~~~~~~  503 (540)
T 3nsj_A          459 VQVWDADYGWDDDLLGSCDRSPHS----GFHEVTCEL-------------NHGRVKFSYHAK  503 (540)
T ss_dssp             EEEEECCSSSCCEEEEEEEECCCS----EEEEEEEEC-------------SSSEEEEEEEEE
T ss_pred             EEEEECCCCCCCCEEEEEEEEeeC----CcEEEEEEc-------------CCeEEEEEEEEE
Confidence            999999999999999999999872    234556543             358888887644

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=7.2e-18  Score=145.12  Aligned_cols=109  Identities=19%  Similarity=0.375  Sum_probs=87.8

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~  329 (538)
                      +....|.|.|+|++|+||+.++..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+..   .....|.|+
T Consensus        13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~   92 (129)
T 2bwq_A           13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   92 (129)
T ss_dssp             EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred             EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence            345679999999999999999988999999999995432  345799999999999999999999532   235799999


Q ss_pred             EEeccCCCC--CcccEEEEEeCccCCCCCCeEEEEec
Q 009307          330 VYDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       330 v~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |||++..++  |++||++.+++.++.... ...|++|
T Consensus        93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            999999887  999999999999987654 6677765

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.74  E-value=1.4e-17  Score=147.88  Aligned_cols=123  Identities=24%  Similarity=0.387  Sum_probs=101.3

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC--CCCCcEEEEEEC-----CeE
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFR-----GEE  448 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~-----~~~  448 (538)
                      ....|++.+++.|.+                         ..+.|.|+|++|++|+..  +.+||||++++.     ...
T Consensus        10 ~~~~G~~~lsL~y~~-------------------------~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~   64 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDA-------------------------QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRH   64 (153)
T ss_dssp             ---CCCCEEEEEEEE-------------------------SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTC
T ss_pred             cCCCCEEEEEEEEEC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccE
Confidence            567899999999997                         378999999999999764  578999999993     345


Q ss_pred             EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC-CceeEEEEEechhhcc-cceeceEEEeCCCCC
Q 009307          449 RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP-KETLGYIDINLSDVVS-NKRINEKYHLIDSKN  526 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~  526 (538)
                      ++|++++++.||+|||.|.|.+........|.|+|||++.    +++ |++||++.++|+++.. +....+||+|.+...
T Consensus        65 ~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~  140 (153)
T 3fbk_A           65 QKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS----QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL  140 (153)
T ss_dssp             EECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS----SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred             EeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC----CCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence            7999999999999999999998543344579999999985    455 8999999999999985 567789999987654


Q ss_pred             c
Q 009307          527 G  527 (538)
Q Consensus       527 G  527 (538)
                      |
T Consensus       141 g  141 (153)
T 3fbk_A          141 G  141 (153)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=4.1e-17  Score=142.10  Aligned_cols=121  Identities=17%  Similarity=0.134  Sum_probs=101.9

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCCCCCCcEEEEEEC---C-eEEEe
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFR---G-EERKT  451 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~---~-~~~kT  451 (538)
                      ....|+|++++.|.+                         ..+.|+|+|++|++....+.+||||++++.   + ..++|
T Consensus         9 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT   63 (138)
T 1wfm_A            9 WNQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT   63 (138)
T ss_dssp             CSSCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEEEEEEEeC-------------------------CCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEec
Confidence            456899999999984                         377999999999976666789999999994   2 24699


Q ss_pred             eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                      ++++++.||+|||.|.|.+..... ...|.++|||++.    ++++++||++.++|.++.......+||+|....
T Consensus        64 ~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~----~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           64 ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             ccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            999999999999999999875422 3589999999986    678999999999999997656678999998753

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=1.3e-17  Score=145.25  Aligned_cols=109  Identities=17%  Similarity=0.263  Sum_probs=92.5

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc-cCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY  331 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~  331 (538)
                      +....+.|+|+|++|++   +|..|.+||||++++.+. ....++|+++++++||+|||+|.|.+....  ...|.|+||
T Consensus        21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~   97 (138)
T 1wfm_A           21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR   97 (138)
T ss_dssp             EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred             EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence            44567999999999993   677899999999999642 233469999999999999999999986432  568999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      |+|.+++|++||++.++|.++..+.....|++|..
T Consensus        98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            99999999999999999999987667778888753

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=5.3e-18  Score=149.49  Aligned_cols=111  Identities=29%  Similarity=0.410  Sum_probs=93.5

Q ss_pred             CCCCeeEEEEEEEeecCCccC-CC------CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCE
Q 009307          255 YRRPVGILHVKVVKAMNLKKK-DL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQA  325 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~  325 (538)
                      +....+.|.|+|++|+||+.+ +.      .|.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....
T Consensus        21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  100 (147)
T 2enp_A           21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT  100 (147)
T ss_dssp             EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred             EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence            445679999999999999984 33      35899999999986544467999999999999999999998642  2468


Q ss_pred             EEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       326 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      |.|+|||++.+++|++||++.++|.++........|+.|.
T Consensus       101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~  140 (147)
T 2enp_A          101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI  140 (147)
T ss_dssp             EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred             EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence            9999999999999999999999999998776666777764

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.74  E-value=2.7e-17  Score=142.95  Aligned_cols=114  Identities=16%  Similarity=0.311  Sum_probs=98.8

Q ss_pred             CceEEEEEEEeeecCCCCC---C-----------CCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009307          416 GGGLLVVIVHEAQDVEGKH---H-----------TNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH  480 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~---~-----------~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~  480 (538)
                      ..|.|+|+|++|++|+..+   .           +||||++++++.. .+|++++++.||+|||.|+|.+.+.   ..|.
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~   80 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence            4789999999999998632   2           8999999998765 5999999999999999999999763   6899


Q ss_pred             EEEEEcccCccCCCCCceeEEEEEechhhcccc--eeceEEEeCCCCCcEEEEEEEEEeC
Q 009307          481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK--RINEKYHLIDSKNGRIQIELQWRTA  538 (538)
Q Consensus       481 v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~G~I~l~~~w~p~  538 (538)
                      ++|||++.    +++|++||++.++|+++..+.  ..+.|++|.  +.|+|+|+++|.++
T Consensus        81 ~~V~d~d~----~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           81 LAVFHDAP----IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCS----SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEEE
T ss_pred             EEEEeCCC----CCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--CCeEEEEEEEEEec
Confidence            99999985    678999999999999998753  457899986  48999999999863

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=1.7e-17  Score=143.53  Aligned_cols=115  Identities=25%  Similarity=0.407  Sum_probs=100.7

Q ss_pred             CCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009307          415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG  491 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g  491 (538)
                      ...|.|+|+|++|++|+..   +.+||||+++++++.++|++++++.||.|||.|.|.+.+.  ...|.++|||++.   
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~---   84 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---   84 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCC---
Confidence            4689999999999999864   5789999999999999999999999999999999999863  4689999999986   


Q ss_pred             CCCCCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEEEe
Q 009307          492 LLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWRT  537 (538)
Q Consensus       492 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w~p  537 (538)
                       ++++++||++.++|.++..+.  .+||+|.+.     ..|+|+|+++|-.
T Consensus        85 -~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           85 -DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             -TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             -CCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence             567899999999999997644  589999753     4699999999864

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.73  E-value=3.7e-18  Score=150.66  Aligned_cols=112  Identities=21%  Similarity=0.377  Sum_probs=97.0

Q ss_pred             CCCCeeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~  329 (538)
                      +....|.|.|+|++|+||+.++ ..|.+||||++++.+..  ...++|+++++++||+|||+|.|.+....  ...|.|+
T Consensus        18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~   97 (148)
T 3fdw_A           18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS   97 (148)
T ss_dssp             EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence            4456799999999999999888 57899999999997543  23679999999999999999999986542  4579999


Q ss_pred             EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      |||+|..++|++||++.++|.++..+.....|++|..
T Consensus        98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  134 (148)
T 3fdw_A           98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG  134 (148)
T ss_dssp             EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred             EEECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence            9999999999999999999999987777788998854

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.73  E-value=8.7e-17  Score=141.85  Aligned_cols=117  Identities=22%  Similarity=0.389  Sum_probs=99.0

Q ss_pred             CCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccC--
Q 009307          415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR--  489 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~--  489 (538)
                      ...|.|+|+|++|++|+..   +.+||||++++++..++|++++++.||.|||.|.|.+...  .+.|.++|||++..  
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~   91 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIK   91 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHH
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCcc
Confidence            4579999999999999864   5799999999999999999999999999999999999764  36899999999851  


Q ss_pred             ------ccCCCCCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEEE
Q 009307          490 ------IGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWR  536 (538)
Q Consensus       490 ------~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w~  536 (538)
                            .+ .+.+++||++.++|+++.  ....+||+|...     ..|+|+|+++|.
T Consensus        92 ~~~~~~~~-~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           92 SRVKQRFK-RESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHTTTS-SCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccc-CCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                  00 157999999999999983  455799999743     369999999885

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=2.1e-17  Score=144.56  Aligned_cols=122  Identities=27%  Similarity=0.476  Sum_probs=101.5

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEE-----CCe
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGE  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~  447 (538)
                      +...|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++     ...
T Consensus         4 ~~~~G~i~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~   58 (141)
T 1v27_A            4 GSSGGQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN   58 (141)
T ss_dssp             CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSS
T ss_pred             CCcccEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCc
Confidence            567899999999985                         367999999999999864   56899999999     345


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCccCCCC--CceeEEEEEechhhcccceeceEEEeCC
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHP--KETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      .++|++++++.||+|||.|.|.+....  ....|.|+|||++.    ++.  +++||++.++|.++.... ..+||+|..
T Consensus        59 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~  133 (141)
T 1v27_A           59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALLDD-EPHWYKLQT  133 (141)
T ss_dssp             CCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCS----SSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred             ceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCC----CcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence            679999999999999999999853221  23589999999986    455  899999999999987655 689999987


Q ss_pred             CCCc
Q 009307          524 SKNG  527 (538)
Q Consensus       524 ~~~G  527 (538)
                      ...|
T Consensus       134 ~~~g  137 (141)
T 1v27_A          134 HDSG  137 (141)
T ss_dssp             CSSC
T ss_pred             cccC
Confidence            6544

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=9.3e-18  Score=148.28  Aligned_cols=122  Identities=22%  Similarity=0.482  Sum_probs=102.0

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~  447 (538)
                      ....|+|.+++.|.                           .+.|.|+|++|++|+..   +.+||||++++.+     .
T Consensus        16 ~~~~G~l~~~l~~~---------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~   68 (149)
T 1a25_A           16 MERRGRIYIQAHID---------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES   68 (149)
T ss_dssp             -CTTCEEEEEEEES---------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSS
T ss_pred             CCcceEEEEEEEec---------------------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcc
Confidence            34679999999873                           46799999999999864   5789999999973     5


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCc
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG  527 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G  527 (538)
                      .++|++++++.||+|||.|.|.+........|.|+|||++.    ++++++||++.++|.++... ...+||+|.+...|
T Consensus        69 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  143 (149)
T 1a25_A           69 KQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  143 (149)
T ss_dssp             CEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             eEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC----CCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCC
Confidence            67999999999999999999999764334589999999986    57899999999999999875 46799999876556


Q ss_pred             EE
Q 009307          528 RI  529 (538)
Q Consensus       528 ~I  529 (538)
                      ++
T Consensus       144 ~~  145 (149)
T 1a25_A          144 EY  145 (149)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.73  E-value=2.3e-17  Score=145.62  Aligned_cols=121  Identities=20%  Similarity=0.308  Sum_probs=102.8

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC----CCCCCcEEEEEECC-----
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRG-----  446 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~-----  446 (538)
                      ...+|+|.+++.|.+                         ..+.|.|+|++|++|+.    .+.+||||++++..     
T Consensus         6 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~   60 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQ-------------------------QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ   60 (148)
T ss_dssp             CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGG
T ss_pred             CccceEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCccc
Confidence            457899999999985                         37899999999999984    35799999999962     


Q ss_pred             eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          447 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       447 ~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                      ..++|++++++.||+|||.|.|.+..... ...|.|+|||++.    ++++++||++.++|+++..+....+||+|.+.+
T Consensus        61 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A           61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR----FGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             GEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECG----GGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCC----CcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            36799999999999999999999876422 3479999999986    578999999999999998777778999998653

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=2.1e-17  Score=146.06  Aligned_cols=108  Identities=33%  Similarity=0.538  Sum_probs=93.6

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE  334 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~  334 (538)
                      ..+.|.|+|++|++|+.++..+.+||||++++.+..  ...++|++++++.||+|||+|.|.+.... ...|.|+|||++
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            357899999999999999988999999999998532  34579999999999999999999987542 468999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      ..++|++||++.+++.++..+ ....|++|..
T Consensus       109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A          109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence            999999999999999999876 4677888743

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=9.4e-18  Score=147.00  Aligned_cols=111  Identities=27%  Similarity=0.334  Sum_probs=92.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+.++..| +||||++++.+..  ...++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V   97 (142)
T 2dmg_A           19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV   97 (142)
T ss_dssp             EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence            3456789999999999999999888 9999999996532  2467999999999999999999998532  246899999


Q ss_pred             EeccCCCC--CcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          331 YDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       331 ~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      ||++.+++  |++||++.+++.++..+.....|++|..
T Consensus        98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             EECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            99998763  5799999999999987766777887743

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=2.4e-17  Score=146.13  Aligned_cols=120  Identities=18%  Similarity=0.303  Sum_probs=102.0

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEE
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEER  449 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~  449 (538)
                      ....|+|.+++.|.+                         ..+.|+|+|++|++|+..   +.+||||++++.   .+.+
T Consensus        25 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~   79 (152)
T 1rsy_A           25 EEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF   79 (152)
T ss_dssp             -CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCE
T ss_pred             CCCceEEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceE
Confidence            456899999999985                         368999999999999864   578999999994   4567


Q ss_pred             EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      +|++++++.||+|||.|.|.+.... ....|.|+|||++.    ++++++||++.++|+++..+....+||+|.++
T Consensus        80 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A           80 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             ECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             eccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            9999999999999999999886321 23689999999985    67899999999999999877778899999764

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=4.5e-18  Score=149.03  Aligned_cols=107  Identities=25%  Similarity=0.448  Sum_probs=93.0

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC-----------CeeeeeecCCCCCCeEecEEEEE-eeC--CCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-----------PSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQ  324 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~~T~v~~~t~nP~w~e~f~f~-v~~--~~~~  324 (538)
                      .|.|.|+|++|+||+.+|..|.+||||++++.+...           ..++|+++++++||+|||+|.|. +..  ....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            589999999999999999889999999999987531           24689999999999999999997 532  2367


Q ss_pred             EEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          325 AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       325 ~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      .|.|+|||+|..++|++||++.+++.++..+.....|++|.
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  137 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK  137 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECC
Confidence            99999999999999999999999999998766677888874

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=4.2e-17  Score=142.61  Aligned_cols=121  Identities=21%  Similarity=0.290  Sum_probs=101.9

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEE
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEER  449 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~  449 (538)
                      ....|+|.+++.|.+                         ..+.|+|+|++|++|+..   +.+||||++++.   ...+
T Consensus         9 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~   63 (141)
T 2d8k_A            9 RENLGRIQFSVGYNF-------------------------QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL   63 (141)
T ss_dssp             CCCCCEEEEEEEECS-------------------------SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEE
T ss_pred             CceeeEEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccE
Confidence            456899999999985                         367899999999999864   578999999995   3567


Q ss_pred             EeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                      +|++++++.||+|||.|.|.+....  ....|.|+|||++.    ++++++||++.++|.++..+.....||+|....
T Consensus        64 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A           64 ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR----FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             ECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS----SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             eCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC----CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            9999999999999999999853211  23589999999986    578999999999999998877778999997654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.72  E-value=1.5e-17  Score=150.42  Aligned_cols=108  Identities=25%  Similarity=0.422  Sum_probs=94.3

Q ss_pred             CeeEEEEEEEeecCCccCCC-CCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE-ec
Q 009307          258 PVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DW  333 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~  333 (538)
                      ..|.|.|+|++|+||+.+|. .|.+||||++++.+..  ...++|+++++++||+|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            47899999999999999985 6999999999997542  235799999999999999999999854 4689999999 99


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      |.+++|++||++.++|.++..+.....|++|..
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~  139 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP  139 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence            999999999999999999998878888998854

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.72  E-value=7.7e-17  Score=146.52  Aligned_cols=118  Identities=21%  Similarity=0.392  Sum_probs=95.3

Q ss_pred             CCceEEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009307          415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS  485 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d  485 (538)
                      ...|.|+|+|++|++|+..   +.+||||++++++      ..++|++++++.||.|||.|.|.+..  ....|.|+|||
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~L~~~V~d   82 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP--QRHRILFEVFD   82 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT--TTCEEEEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC--CCCEEEEEEEE
Confidence            3689999999999999763   5799999999975      56799999999999999999999975  34689999999


Q ss_pred             cccCccCCCCCceeEEEEEechhhccccee-c-----eEEEeCCC-----CCcEEEEEEEEEeC
Q 009307          486 VSSRIGLLHPKETLGYIDINLSDVVSNKRI-N-----EKYHLIDS-----KNGRIQIELQWRTA  538 (538)
Q Consensus       486 ~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~-----~~G~I~l~~~w~p~  538 (538)
                      ++.    ++++++||++.++|.++...... .     +||+|...     ..|+|+|++.|.|+
T Consensus        83 ~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENR----LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC--------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCC----CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            985    67899999999999999876432 2     79999753     26999999999884

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=1.6e-17  Score=145.20  Aligned_cols=111  Identities=19%  Similarity=0.364  Sum_probs=93.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~  329 (538)
                      +....+.|.|+|++|++|+.++..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+..   .....|.|+
T Consensus        16 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~   95 (141)
T 1v27_A           16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   95 (141)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred             EeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence            344568999999999999999988999999999985422  345699999999999999999999532   235799999


Q ss_pred             EEeccCCCC--CcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          330 VYDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       330 v~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      |||++..++  |++||++.+++.++.... ...|++|..
T Consensus        96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~  133 (141)
T 1v27_A           96 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT  133 (141)
T ss_dssp             EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred             EEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence            999999887  999999999999987654 778888754

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=4.7e-17  Score=139.99  Aligned_cols=115  Identities=27%  Similarity=0.475  Sum_probs=93.8

Q ss_pred             cccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEE-----CCeEE
Q 009307          378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEER  449 (538)
Q Consensus       378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~  449 (538)
                      ..|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++     +...+
T Consensus         3 ~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~   57 (129)
T 2bwq_A            3 LSGQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKR   57 (129)
T ss_dssp             CCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEE
T ss_pred             eeEEEEEEEEEcc-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcce
Confidence            4799999999985                         368999999999999864   46899999999     34678


Q ss_pred             EeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCccCCCC--CceeEEEEEechhhcccceeceEEEeC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHP--KETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      +|++++++.||+|||.|.|.+....  ....|.++|||++.    +++  +++||++.++|.++.... ..+||+|.
T Consensus        58 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~----~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           58 RTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             ECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-----------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCc----CcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            9999999999999999999963211  23589999999985    455  899999999999987755 68999984

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.71  E-value=4.5e-17  Score=144.52  Aligned_cols=110  Identities=21%  Similarity=0.361  Sum_probs=93.6

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEee--CCCCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR--DPESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~--~~~~~~L~i~v  330 (538)
                      +....|.|.|+|++|+||+..| .|.+||||++++.+.  ....++|++++++.||+|||+|.|.+.  +. ...|.|+|
T Consensus        22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V   99 (153)
T 3fbk_A           22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDD-QKRLLVTV   99 (153)
T ss_dssp             EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGT-TSEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHh-CCEEEEEE
Confidence            4557899999999999999998 699999999999643  234579999999999999999999984  33 35699999


Q ss_pred             EeccCCCC-CcccEEEEEeCccCCC-CCCeEEEEeccc
Q 009307          331 YDWEQVGK-HDKMGMNVVPLKELTP-EEPSVKTLDLLK  366 (538)
Q Consensus       331 ~d~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~l~~  366 (538)
                      ||++..++ |++||++.+++.++.. +.....|++|..
T Consensus       100 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~  137 (153)
T 3fbk_A          100 WNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG  137 (153)
T ss_dssp             EECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred             EeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence            99998877 9999999999999985 667788988854

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.71  E-value=6.5e-17  Score=141.77  Aligned_cols=119  Identities=18%  Similarity=0.301  Sum_probs=102.0

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEE---CCeEE
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEER  449 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~~  449 (538)
                      ....|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++   +.+.+
T Consensus        17 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~   71 (143)
T 3f04_A           17 VEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF   71 (143)
T ss_dssp             CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCE
T ss_pred             ccCeEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccE
Confidence            346899999999985                         378999999999999874   57999999999   44578


Q ss_pred             EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      +|++++++.||.|||.|.|.+.... ....|.|+|||++.    ++++++||++.++|.++..+....+||+|..
T Consensus        72 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           72 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             ECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             ECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC----CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            9999999999999999999986421 23589999999986    6789999999999999988777889999964

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=4.1e-17  Score=143.77  Aligned_cols=121  Identities=24%  Similarity=0.282  Sum_probs=100.8

Q ss_pred             CCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----------CCCCcEEEEEE
Q 009307          375 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----------HHTNPYARILF  444 (538)
Q Consensus       375 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----------~~~dpyv~v~~  444 (538)
                      .....|+|.+++.|.|                         ..+.|.|+|++|++|+..          +.+||||++++
T Consensus         8 ~~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l   62 (147)
T 2enp_A            8 SKYQLGMLHFSTQYDL-------------------------LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL   62 (147)
T ss_dssp             SCCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEE
T ss_pred             CCCcceEEEEEEEEcC-------------------------CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEE
Confidence            3567899999999985                         378999999999999863          36899999999


Q ss_pred             CC---eEEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEE
Q 009307          445 RG---EERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYH  520 (538)
Q Consensus       445 ~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~  520 (538)
                      ..   ..++|++++++.||+|||.|.|.+.... ....|.|+|||++.    ++++++||++.++|.++........|+.
T Consensus        63 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~  138 (147)
T 2enp_A           63 LPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK----FSRHCVIGKVSVPLCEVDLVKGGHWWKA  138 (147)
T ss_dssp             ETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCST----TCCSCCCEEEEEETTTSCTTTCCCEEEC
T ss_pred             EeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCC----CcCCcEEEEEEEechhcCCCCCccEEEE
Confidence            63   4679999999999999999999876421 12489999999985    6788999999999999977666677888


Q ss_pred             eCCC
Q 009307          521 LIDS  524 (538)
Q Consensus       521 L~~~  524 (538)
                      |...
T Consensus       139 L~~~  142 (147)
T 2enp_A          139 LIPS  142 (147)
T ss_dssp             CBCC
T ss_pred             eecC
Confidence            8754

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.70  E-value=1.5e-16  Score=137.71  Aligned_cols=106  Identities=26%  Similarity=0.413  Sum_probs=88.7

Q ss_pred             ceEEEEEEEeeecCCC--CCCCCcEEEEEE-----CCeEEEeeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcc
Q 009307          417 GGLLVVIVHEAQDVEG--KHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVS  487 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~--~~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~  487 (538)
                      .+.|.|+|++|++|+.  .+.+||||++++     ....++|++++++.||+|||.|.|. +.... ....|.|+|||++
T Consensus        19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d   98 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE   98 (134)
T ss_dssp             TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence            6789999999999986  357899999999     3456799999999999999999999 65321 2358999999998


Q ss_pred             cCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307          488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN  526 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~  526 (538)
                      .    ++++++||++.++|+++..+....+||+|.+.+.
T Consensus        99 ~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  133 (134)
T 2b3r_A           99 S----LRENFFLGGITLPLKDFNLSKETVKWYQLTAATY  133 (134)
T ss_dssp             S----SSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred             C----CCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence            5    6788999999999999988777889999987544

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.70  E-value=9.3e-17  Score=143.46  Aligned_cols=98  Identities=39%  Similarity=0.637  Sum_probs=85.3

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v  330 (538)
                      +....|.|.|+|++|+||+..|..|.+||||++++.+.  ....++|+++++++||+|||+|.|.+....  ...|.|+|
T Consensus        20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V   99 (159)
T 1tjx_A           20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (159)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence            44567999999999999999998899999999999743  223579999999999999999999986432  46899999


Q ss_pred             EeccCCCCCcccEEEEEeCccC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKEL  352 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l  352 (538)
                      ||++.+++|++||++.+++..+
T Consensus       100 ~d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A          100 LDYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             EECCSSSCCEEEEEEEEETTCC
T ss_pred             EECCCCCCCceEEEEEECCCCC
Confidence            9999999999999999999864

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.70  E-value=1.5e-16  Score=136.86  Aligned_cols=88  Identities=20%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV  336 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  336 (538)
                      +.|.|.|+|++|++++.   .|.+||||+++ . +.   .+|+++. ++.||+|||+|.|.+... ...|.|+|||+| .
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   72 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   72 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence            57999999999998852   57899999999 2 22   3555554 799999999999999865 568999999999 8


Q ss_pred             CCCcccEEEEEeCccCCCC
Q 009307          337 GKHDKMGMNVVPLKELTPE  355 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~~~  355 (538)
                      ++|++||++.++|+++...
T Consensus        73 ~~dd~iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           73 IWDTMVGTVWIPLRTIRQS   91 (131)
T ss_dssp             SCEEEEEEEEEEGGGSCBC
T ss_pred             CCCCeEEEEEEEHHHhhhc
Confidence            8999999999999998754

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.70  E-value=3.9e-17  Score=144.85  Aligned_cols=118  Identities=17%  Similarity=0.317  Sum_probs=98.7

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC---e--
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---E--  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~--  447 (538)
                      ....|+|++++.|.+                         ..+.|+|+|++|+||+.+   +.+||||++++..   .  
T Consensus        26 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~   80 (155)
T 2z0u_A           26 AVGATRIQIALKYDE-------------------------KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTT   80 (155)
T ss_dssp             --CCEEEEEEEEEET-------------------------TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHH
T ss_pred             cCCcEEEEEEEEEcC-------------------------CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCc
Confidence            356799999999985                         368999999999999864   5799999999965   2  


Q ss_pred             -EEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc-cceeceEEEeC
Q 009307          448 -ERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS-NKRINEKYHLI  522 (538)
Q Consensus       448 -~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~  522 (538)
                       ++||++++++.||+|||.|.|.+.... ....|.++|||++.    ++++++||++.++|+++.. .....+||+|.
T Consensus        81 ~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~----~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A           81 CLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR----SHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             HEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             cceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCC----CCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence             679999999999999999999986421 13479999999986    6789999999999999964 45678999985

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=2.7e-17  Score=144.09  Aligned_cols=119  Identities=19%  Similarity=0.382  Sum_probs=99.7

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----  447 (538)
                      ....|+|.+++.|.                           .|.|.|+|++|++|+..   +.+||||++++.+.     
T Consensus         3 ~~~~G~i~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~   55 (142)
T 1rh8_A            3 HPITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVM   55 (142)
T ss_dssp             CCCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCE
T ss_pred             CCcceEEEEEEEEc---------------------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCccc
Confidence            45689999999996                           46899999999999864   57899999999763     


Q ss_pred             ---------EEEeeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceec
Q 009307          448 ---------ERKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRIN  516 (538)
Q Consensus       448 ---------~~kT~v~~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~  516 (538)
                               .++|++++++.||+|||.|.|. +.... ....|.++|||++.    ++++++||++.++|+++.......
T Consensus        56 ~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~  131 (142)
T 1rh8_A           56 VVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHLDNTP  131 (142)
T ss_dssp             ECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGGTTCC
T ss_pred             ccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCC----CCCCceEEEEEEeccccccCCCCC
Confidence                     3689999999999999999997 43211 24589999999986    678999999999999998766778


Q ss_pred             eEEEeCCCC
Q 009307          517 EKYHLIDSK  525 (538)
Q Consensus       517 ~~~~L~~~~  525 (538)
                      +||+|.+..
T Consensus       132 ~W~~L~~~~  140 (142)
T 1rh8_A          132 RWYPLKEQT  140 (142)
T ss_dssp             EEEECBCCC
T ss_pred             eEEECCccC
Confidence            999998653

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.69  E-value=7.7e-17  Score=140.34  Aligned_cols=99  Identities=31%  Similarity=0.520  Sum_probs=85.8

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v  330 (538)
                      +....|.|.|+|++|++|+..|..|.+||||++++.+..  ...++|++++++.||.|||+|.|.+....  ...|.|+|
T Consensus        11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V   90 (138)
T 3n5a_A           11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV   90 (138)
T ss_dssp             EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred             EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence            344679999999999999999988999999999997532  23568999999999999999999986542  36899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELT  353 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~  353 (538)
                      ||++..++|++||++.+++.++.
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           91 MDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             EECCSSSCCEEEEEEEESSSSCH
T ss_pred             EECCCCCCCcEEEEEEEccccCC
Confidence            99999999999999999999754

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.69  E-value=2e-16  Score=142.30  Aligned_cols=99  Identities=29%  Similarity=0.525  Sum_probs=86.7

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+.+|..|.+||||++++.+..  ...++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V  111 (166)
T 2cm5_A           32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV  111 (166)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence            445689999999999999999988999999999998632  3457999999999999999999998643  256999999


Q ss_pred             EeccCCCCCcccEEEEEeCccCC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELT  353 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~  353 (538)
                      ||++.+++|++||++.+++.++.
T Consensus       112 ~d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          112 WDYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCH
T ss_pred             EECCCCCCCcEEEeEEEecccCC
Confidence            99999999999999999999863

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.68  E-value=5.5e-16  Score=133.83  Aligned_cols=114  Identities=21%  Similarity=0.383  Sum_probs=95.1

Q ss_pred             CceEEEEEEEeeecCCCC---CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009307          416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI  490 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~--~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~  490 (538)
                      ....|+|+|++|++|+..   +.+||||++++++  +.++|++++++.||+|||.|.|.+...   +.|.++|||++.  
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~--   77 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKK--   77 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGG--
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCC--
Confidence            356899999999999764   5789999999975  678999999999999999999999764   359999999985  


Q ss_pred             cCCCC---CceeEEEEEechhhcc-cceeceEEEeCCC-------CCcEEEEEEEEE
Q 009307          491 GLLHP---KETLGYIDINLSDVVS-NKRINEKYHLIDS-------KNGRIQIELQWR  536 (538)
Q Consensus       491 g~~~~---d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~-------~~G~I~l~~~w~  536 (538)
                        +++   |++||++.++++++.. .....+|++|...       ..|+|++++++|
T Consensus        78 --~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           78 --IHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             --TTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             --CCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence              444   7999999999999844 3344688999654       179999999875

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.68  E-value=9.4e-17  Score=142.46  Aligned_cols=97  Identities=33%  Similarity=0.468  Sum_probs=79.4

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+.++..|.+||||++++.+.  ....++|+++++++||+|||+|.|.+....  ...|.|+|
T Consensus        25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V  104 (153)
T 1w15_A           25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV  104 (153)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence            44467999999999999999998899999999999543  223569999999999999999999987542  46899999


Q ss_pred             EeccCCCCCcccEEEEEeCcc
Q 009307          331 YDWEQVGKHDKMGMNVVPLKE  351 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~  351 (538)
                      ||++.+++|++||++.+++.+
T Consensus       105 ~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          105 LDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             EECCTTSCCEEEEEEEESTTC
T ss_pred             EeCCCCCCCcEEEEEEECCCC
Confidence            999999999999999999988

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=9.4e-17  Score=140.58  Aligned_cols=121  Identities=23%  Similarity=0.365  Sum_probs=99.9

Q ss_pred             CCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----
Q 009307          375 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----  446 (538)
Q Consensus       375 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----  446 (538)
                      .....|+|.+++.|.+                         ..+.|.|+|++|++|+..   + +||||++++..     
T Consensus         6 ~~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~   59 (142)
T 2dmg_A            6 SGSPLGQIQLTIRHSS-------------------------QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRS   59 (142)
T ss_dssp             CSCSSCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSS
T ss_pred             CCCCcceEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCC
Confidence            3567899999999985                         367999999999999863   5 89999999943     


Q ss_pred             eEEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCC--CCceeEEEEEechhhcccceeceEEEeCC
Q 009307          447 EERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLH--PKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       447 ~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      ..++|++++++.||+|||.|.|.+.... ....|.|+|||++.    ++  .+++||++.++|+++.......+||+|.+
T Consensus        60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG----FLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC----SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC----ccccCCcEEEEEEEecccccccccccceeeccC
Confidence            4679999999999999999999985321 12489999999985    33  35799999999999887667789999986


Q ss_pred             CC
Q 009307          524 SK  525 (538)
Q Consensus       524 ~~  525 (538)
                      .+
T Consensus       136 ~~  137 (142)
T 2dmg_A          136 DS  137 (142)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.67  E-value=1.1e-16  Score=144.17  Aligned_cols=106  Identities=19%  Similarity=0.370  Sum_probs=90.9

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~  447 (538)
                      ....|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++.+     .
T Consensus        20 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~   74 (166)
T 2cm5_A           20 IEERGKILVSLMYST-------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKA   74 (166)
T ss_dssp             CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CC
T ss_pred             cCccceEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccc
Confidence            567899999999985                         378999999999999864   5789999999975     5


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhc
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVV  510 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~  510 (538)
                      .++|++++++.||+|||.|.|.+..... ...|.|+|||++.    ++++++||++.+++.++.
T Consensus        75 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A           75 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCH
T ss_pred             eEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC----CCCCcEEEeEEEecccCC
Confidence            6799999999999999999999864321 3589999999985    678999999999998853

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.67  E-value=4.9e-16  Score=138.73  Aligned_cols=121  Identities=19%  Similarity=0.351  Sum_probs=99.4

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~  447 (538)
                      ....|+|.+++.|.|                         ..+.|.|+|++|++|+..   +.+||||++++.+     .
T Consensus         8 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~   62 (159)
T 1tjx_A            8 LEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK   62 (159)
T ss_dssp             GGCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE
T ss_pred             cCcCCeEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceec
Confidence            457899999999985                         378999999999999864   5789999999963     3


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechh----------hcc--cce
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSD----------VVS--NKR  514 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~----------l~~--~~~  514 (538)
                      .++|++++++.||+|||.|.|.+..... ...|.|+|||++.    ++++++||++.+++..          +..  +..
T Consensus        63 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~  138 (159)
T 1tjx_A           63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP  138 (159)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCC
T ss_pred             eeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC----CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCe
Confidence            5699999999999999999999864322 3479999999985    6789999999999984          333  246


Q ss_pred             eceEEEeCCCC
Q 009307          515 INEKYHLIDSK  525 (538)
Q Consensus       515 ~~~~~~L~~~~  525 (538)
                      ..+||+|....
T Consensus       139 ~~~W~~L~~~~  149 (159)
T 1tjx_A          139 IAQWHTLQVEE  149 (159)
T ss_dssp             EEEEEECBCHH
T ss_pred             eeeEEECcCcc
Confidence            77999997643

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=9e-16  Score=150.70  Aligned_cols=132  Identities=19%  Similarity=0.313  Sum_probs=113.1

Q ss_pred             ccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEE
Q 009307          377 KSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERK  450 (538)
Q Consensus       377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~k  450 (538)
                      ...|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||+++++.   +.++
T Consensus         3 ~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~   57 (284)
T 2r83_A            3 EKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFE   57 (284)
T ss_dssp             CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEE
T ss_pred             cceeEEEEEEEEEC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEe
Confidence            45899999999985                         378999999999999863   5799999999963   4679


Q ss_pred             eeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC-----
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----  524 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----  524 (538)
                      |++++++.||.|||.|.|.+.... ....|.++|||++.    ++.+++||++.++|.++..+....+||+|...     
T Consensus        58 T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~  133 (284)
T 2r83_A           58 TKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQ  133 (284)
T ss_dssp             CCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS----SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCC
T ss_pred             CCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC----CCCCceeEEEEEcchhcccCCcceeEEEeeccccccc
Confidence            999999999999999999986432 23589999999985    67899999999999999887778899999753     


Q ss_pred             -CCcEEEEEEEEEe
Q 009307          525 -KNGRIQIELQWRT  537 (538)
Q Consensus       525 -~~G~I~l~~~w~p  537 (538)
                       ..|+|.++++|.|
T Consensus       134 ~~~G~i~l~l~~~p  147 (284)
T 2r83_A          134 EKLGDICFSLRYVP  147 (284)
T ss_dssp             CCCCEEEEEEEEET
T ss_pred             cccccEEEEEEecC
Confidence             3599999999876

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.67  E-value=1.6e-16  Score=141.00  Aligned_cols=118  Identities=18%  Similarity=0.251  Sum_probs=91.9

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC--Ce---
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--GE---  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~~---  447 (538)
                      ....|+|.+++.|.|                         ..+.|.|+|++|++|+..   +.+||||++++.  +.   
T Consensus        13 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~   67 (153)
T 1w15_A           13 PSGRGELLVSLCYQS-------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS   67 (153)
T ss_dssp             ---CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEE
T ss_pred             CccccEEEEEEEEcC-------------------------CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEec
Confidence            457899999999986                         368999999999999864   578999999993  33   


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      +++|++++++.||+|||.|.|.+..... ...|.|+|||++.    ++++++||++.+++++  ......+||+|.+.
T Consensus        68 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  139 (153)
T 1w15_A           68 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATA--EGSGGGHWKEICDF  139 (153)
T ss_dssp             EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTC--CSHHHHHHHHHHHS
T ss_pred             eEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC----CCCCcEEEEEEECCCC--CchHHHHHHHHHhC
Confidence            5699999999999999999999876432 2479999999985    6789999999999988  22233455555443

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.67  E-value=3.1e-16  Score=137.24  Aligned_cols=119  Identities=21%  Similarity=0.411  Sum_probs=97.4

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~  447 (538)
                      ....|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++.+     .
T Consensus        12 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~   66 (142)
T 2chd_A           12 ATTLGALEFSLLYDQ-------------------------DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSN   66 (142)
T ss_dssp             --CCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGG
T ss_pred             CCccceEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcc
Confidence            457899999999985                         378999999999999864   5789999999975     5


Q ss_pred             EEEeeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~-v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      .++|++++++.||+|||.|.|. +..... ...|.|+|||++.    ++++++||++.++|+++..+....-|++|..
T Consensus        67 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           67 KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK----FGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             eeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCC----CCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            7799999999999999999998 532111 2589999999985    5778999999999999987765555666653

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.66  E-value=1.1e-15  Score=132.98  Aligned_cols=120  Identities=21%  Similarity=0.351  Sum_probs=98.5

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC---eE
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EE  448 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~---~~  448 (538)
                      ....|+|.+++.|.+                         ..+.|.|+|++|++|+..    +.+||||++++..   ..
T Consensus         5 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~   59 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNF-------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHK   59 (138)
T ss_dssp             CCCCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSE
T ss_pred             CCccEEEEEEEEEEC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCce
Confidence            456899999999986                         377999999999999863    5689999999963   57


Q ss_pred             EEeeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccce-eceEEEeCCC
Q 009307          449 RKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR-INEKYHLIDS  524 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~  524 (538)
                      ++|++++++.||+|||.|.|. +.... ....|.|+|||++.    ++++++||++.++|+++..... ..-|++|...
T Consensus        60 ~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             EecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC----CCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            899999999999999999995 54322 23589999999985    6789999999999999977543 3456777654

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.66  E-value=4.2e-16  Score=131.94  Aligned_cols=119  Identities=16%  Similarity=0.253  Sum_probs=100.4

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCC--CCEEEEEEEeccC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQ  335 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~  335 (538)
                      .-.|+|+|.+|.+|+     |++|||+++.+.+.+   ++|++++ ++.||+|||.|.|.+..+.  +..|.++|||+++
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~   91 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK   91 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence            346999999999998     578999999997654   5999998 6999999999999998643  6799999999999


Q ss_pred             CCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      ++++++||++.++|+++...+....+..|..      .++....++|.++++|.|.
T Consensus        92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD------~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLID------DNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             TSCCEEEEEEEEESHHHHHHSEEEEEEEEEC------TTSCEEEEEEEEEEEEEET
T ss_pred             ccCCCEEEEEEEEhHHhccCCeEEEeecccC------CCCCccccEEEEEEEecCC
Confidence            9999999999999999998776666555532      2234566899999999985

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.66  E-value=5e-16  Score=140.35  Aligned_cols=116  Identities=22%  Similarity=0.310  Sum_probs=98.7

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----  446 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----  446 (538)
                      ....|+|.+.+.|.                           .+.|.|+|++|++|+..    +.+||||++++.+     
T Consensus        15 ~~~~G~l~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~   67 (171)
T 2q3x_A           15 TPAMGDIQIGMEDK---------------------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI   67 (171)
T ss_dssp             --CCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEE
T ss_pred             CCCccEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccc
Confidence            44679999999993                           56899999999999853    5789999999964     


Q ss_pred             eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEE-EcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307          447 EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVC-SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       447 ~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~-d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      ..++|++++++.||+|||.|.|.+..  ....|.|+|| |++.    ++++++||++.++|+++..+....+||+|...
T Consensus        68 ~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~L~~~V~~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A           68 AKKKTRIARKTLDPLYQQSLVFDESP--QGKVLQVIVWGDYGR----MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             EEEECCCCCSCSSCEEEEEEECSSCC--TTEEEEEEEEEECST----TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             cceeCccCCCCCCCCCCcEEEEEecC--CCCEEEEEEEEcCCC----CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            26699999999999999999999854  3468999999 8875    67889999999999999877778899999764

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.65  E-value=8.7e-16  Score=138.67  Aligned_cols=115  Identities=20%  Similarity=0.351  Sum_probs=97.8

Q ss_pred             CceEEEEEEEeeecCC-CC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          416 GGGLLVVIVHEAQDVE-GK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~-~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      ..+.|.|+|++|++|+ ..  +.+||||+++++++.++|++++++.||+|||.|.|.+..   ...|.|+|||++.    
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~----  106 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT----  106 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCC----
Confidence            5788999999999998 32  358999999999988899999999999999999999853   5689999999986    


Q ss_pred             CCCCceeEEEEEechhhcccc-----eeceEEEeCCC-----CCcEEEEEEEEEe
Q 009307          493 LHPKETLGYIDINLSDVVSNK-----RINEKYHLIDS-----KNGRIQIELQWRT  537 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~-----~~G~I~l~~~w~p  537 (538)
                      ++.|++||++.++|.++....     ....|++|...     ..|+|.+.+.+.+
T Consensus       107 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~  161 (173)
T 2nq3_A          107 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  161 (173)
T ss_dssp             SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             CCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence            678999999999999997632     23569999754     2699999998765

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.65  E-value=1e-15  Score=133.16  Aligned_cols=115  Identities=20%  Similarity=0.412  Sum_probs=92.8

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k  450 (538)
                      +|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++.+     ..++
T Consensus         2 ~G~l~~sl~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~k   56 (138)
T 3n5a_A            2 RGELLLSLCYNP-------------------------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKK   56 (138)
T ss_dssp             CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEEcC-------------------------CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEe
Confidence            699999999985                         378999999999999864   5789999999964     3569


Q ss_pred             eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      |++++++.||.|||.|.|.+..... ...|.++|||++.    ++++++||++.++|+++..  ...+|++|.+.
T Consensus        57 T~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~----~~~~~~lG~~~i~l~~~~~--~~~~W~~l~~~  125 (138)
T 3n5a_A           57 TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK----LSRNDVIGKIYLSWKSGPG--EVKHWKDMIAR  125 (138)
T ss_dssp             CCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS----SSCCEEEEEEEESSSSCHH--HHHHHHHHHHS
T ss_pred             CccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC----CCCCcEEEEEEEccccCCh--HHHHHHHHHhC
Confidence            9999999999999999999865321 2479999999986    6789999999999997432  22445555443

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=5.7e-16  Score=165.02  Aligned_cols=120  Identities=27%  Similarity=0.465  Sum_probs=102.9

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV  336 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  336 (538)
                      ...|.|.|+|++|++|+.+|..|.+||||++++++..   ++|+++++|+||.|||+|.|.+.......|.|+|||+|..
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            4679999999999999999999999999999997654   5999999999999999999999877778899999999999


Q ss_pred             CCCcccEEEEEeCccCCCCCC----eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          337 GKHDKMGMNVVPLKELTPEEP----SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      ++|++||++.+++.++..+..    ...|+.+.          +...|+|++++.+.
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEEEE
Confidence            999999999999999876432    45666652          34679999888765

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.62  E-value=3.5e-15  Score=133.63  Aligned_cols=89  Identities=19%  Similarity=0.315  Sum_probs=75.4

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCCCCEEEEEEEeccC
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ  335 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  335 (538)
                      .+.+.|+|+|++|++++   ..|.+||||+++ . +.   .+|+++. ++.||+|||+|.|.+.+. ...|.|+|||+| 
T Consensus        11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-   80 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-   80 (167)
T ss_dssp             SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred             CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence            35789999999999884   258899999999 2 22   3666665 699999999999999865 568999999999 


Q ss_pred             CCCCcccEEEEEeCccCCCC
Q 009307          336 VGKHDKMGMNVVPLKELTPE  355 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~  355 (538)
                      .++|++||++.++|+++...
T Consensus        81 ~~~dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           81 LIWDTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             SSCCEEEEEEEEEGGGSCBC
T ss_pred             CCCCceEEEEEEEHHHhccc
Confidence            88999999999999998654

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.60  E-value=1.2e-14  Score=123.00  Aligned_cols=117  Identities=19%  Similarity=0.402  Sum_probs=103.1

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCC
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~  493 (538)
                      +...|+|.|.+|.+|++  .+|||+++.+.+.+++|++++ ++.||+|||.|+|++..+.. .+.|.|.|+|+++    +
T Consensus        19 ~~msL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~----v   92 (144)
T 3l9b_A           19 SHMALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK----V   92 (144)
T ss_dssp             CCEEEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT----T
T ss_pred             CcEEEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc----c
Confidence            45689999999999996  599999999999999999998 69999999999999987533 3589999999987    7


Q ss_pred             CCCceeEEEEEechhhcccceeceEEEeCCCC----CcEEEEEEEEEeC
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRTA  538 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~----~G~I~l~~~w~p~  538 (538)
                      +++.+||++.++|.++...+.+.-+-.|.+.+    .+.|.+++.|.|.
T Consensus        93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             SCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             cCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence            78999999999999999988777777887754    4999999999984

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.59  E-value=7.4e-15  Score=144.97  Aligned_cols=133  Identities=21%  Similarity=0.375  Sum_probs=108.7

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEE---CCeEE
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEER  449 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~~  449 (538)
                      .+..|+|.+++.|.+                         ..+.|.|+|++|++|+..   +.+||||++++   +.+.+
T Consensus         3 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~   57 (296)
T 1dqv_A            3 GAPCGRISFALRYLY-------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF   57 (296)
T ss_dssp             CCSSCEEEEEEECCS-------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCE
T ss_pred             CCeeeEEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeE
Confidence            567899999999974                         378999999999999864   57999999999   45678


Q ss_pred             EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEe-chhhcc-cceeceEEEeCCC--
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDIN-LSDVVS-NKRINEKYHLIDS--  524 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~-l~~l~~-~~~~~~~~~L~~~--  524 (538)
                      +|++++++.||.|||.|.|.+..... ...|.++|||.+.    ++++++||++.++ +.++.. ......|++|...  
T Consensus        58 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~  133 (296)
T 1dqv_A           58 QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS  133 (296)
T ss_dssp             ECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS
T ss_pred             eCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC----CCCCceEEEEEeccccccccCCccceeeeccccccc
Confidence            99999999999999999999864321 3489999999986    6789999999996 555554 2345679999653  


Q ss_pred             ---CCcEEEEEEEEEe
Q 009307          525 ---KNGRIQIELQWRT  537 (538)
Q Consensus       525 ---~~G~I~l~~~w~p  537 (538)
                         ..|+|.+.+.+.|
T Consensus       134 ~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A          134 EKADLGELNFSLCYLP  149 (296)
T ss_dssp             CCSCCCEEEEEEEEET
T ss_pred             cccccceEEEEEEecc
Confidence               2599999999876

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.56  E-value=4.1e-15  Score=161.22  Aligned_cols=108  Identities=23%  Similarity=0.397  Sum_probs=97.9

Q ss_pred             CCeeEEEEEEEeecCCcc---CCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307          257 RPVGILHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW  333 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  333 (538)
                      .+.|.|+|+|++|++|+.   +|..|++||||++++++....++||+++++++||+|||+|.|.+.......|+|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            578999999999999998   78789999999999997554567999999999999999999999876678999999999


Q ss_pred             cCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307          334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL  365 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  365 (538)
                      |.++ |++||++.+++.++..+.....|++|.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~  125 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFN  125 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence            9998 999999999999998887778888874

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.54  E-value=5.1e-14  Score=149.93  Aligned_cols=117  Identities=21%  Similarity=0.452  Sum_probs=102.3

Q ss_pred             CCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009307          415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG  491 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g  491 (538)
                      ...|.|.|+|.+|++|+..   +.+||||++++++..++|++++++.||.|||.|.|.+... ....|.++|||++.   
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~---  459 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQ---  459 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCS---
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---
Confidence            3578999999999999763   5799999999999999999999999999999999999765 44689999999986   


Q ss_pred             CCCCCceeEEEEEechhhcccce----eceEEEeCCCCCcEEEEEEEEE
Q 009307          492 LLHPKETLGYIDINLSDVVSNKR----INEKYHLIDSKNGRIQIELQWR  536 (538)
Q Consensus       492 ~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~G~I~l~~~w~  536 (538)
                       +++|++||++.++++++..+..    ...|++|.+..+|+|+++++.+
T Consensus       460 -~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          460 -FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             -SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             -CCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence             6789999999999999987543    7799999988899999988764

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.54  E-value=9.5e-14  Score=119.28  Aligned_cols=89  Identities=24%  Similarity=0.324  Sum_probs=74.2

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH  494 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~  494 (538)
                      ..+.|.|+|++|++++..+.+||||++.  ++..+|++++ ++.||.|||.|.|.+.+.  ...|.++|||++     ++
T Consensus         3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~   73 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LI   73 (131)
T ss_dssp             CCEEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECC-----SS
T ss_pred             cceEEEEEEEEeECCCCCCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECC-----CC
Confidence            4689999999999997667899999999  3344565554 799999999999999863  457999999997     35


Q ss_pred             CCceeEEEEEechhhcccc
Q 009307          495 PKETLGYIDINLSDVVSNK  513 (538)
Q Consensus       495 ~d~~lG~~~i~l~~l~~~~  513 (538)
                      +|++||++.++|+++....
T Consensus        74 ~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           74 WDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             CEEEEEEEEEEGGGSCBCS
T ss_pred             CCCeEEEEEEEHHHhhhcC
Confidence            7999999999999987643

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.51  E-value=1.1e-13  Score=149.14  Aligned_cols=123  Identities=25%  Similarity=0.441  Sum_probs=100.1

Q ss_pred             CeeEEEEEEEeecCCccCCC--CCCCCcEEEEEEcCc--cCCeeeeeecCCC-CCCeEecEEEEEeeCCCCCEEEEEEEe
Q 009307          258 PVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKN-LNPEWNEEYNFTVRDPESQAVELAVYD  332 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t-~nP~w~e~f~f~v~~~~~~~L~i~v~d  332 (538)
                      ..+.|+|+|++|++|+..+.  .|.+||||++++.+.  ...++||++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999998874  689999999999653  2235699999987 999999999999987766799999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCc-cccEEEEEEEEE
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK-SRGQLVVEFIYK  389 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~G~l~l~l~~~  389 (538)
                      +|..++|++||++.++|..+..+.   .+++|...      .+.. ..|.|.+.+.|.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~------~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK------NGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECT------TSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCC------CcCCCCceEEEEEEEEE
Confidence            999999999999999999998653   35665321      1122 457888888774

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.49  E-value=2e-13  Score=122.17  Aligned_cols=88  Identities=23%  Similarity=0.329  Sum_probs=74.3

Q ss_pred             ceEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307          417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP  495 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~  495 (538)
                      .+.|+|+|++|++++..+.+||||++.  ++..+|++++ ++.||.|||.|.|.+.+.  ...|.++|||++     +++
T Consensus        13 ~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~~   83 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LIW   83 (167)
T ss_dssp             CCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECC-----SSC
T ss_pred             eEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECC-----CCC
Confidence            679999999999987667899999999  3345676665 699999999999999863  458999999997     357


Q ss_pred             CceeEEEEEechhhcccc
Q 009307          496 KETLGYIDINLSDVVSNK  513 (538)
Q Consensus       496 d~~lG~~~i~l~~l~~~~  513 (538)
                      |++||++.++|+++....
T Consensus        84 dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           84 DTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             CEEEEEEEEEGGGSCBCS
T ss_pred             CceEEEEEEEHHHhcccC
Confidence            999999999999987643

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.45  E-value=7.7e-13  Score=139.27  Aligned_cols=109  Identities=26%  Similarity=0.352  Sum_probs=92.2

Q ss_pred             CceEEEEEEEeeecCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          416 GGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      ..|.|.|+|++|++|+.  .+.+||||+++++++..+|++++++.||+|||.|.|.+...+..+.|.|+|||++.    +
T Consensus       392 ~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~----~  467 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY----G  467 (540)
T ss_dssp             TEEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS----S
T ss_pred             cccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC----C
Confidence            47899999999999986  25799999999999889999999999999999999987543345689999999986    5


Q ss_pred             CCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEE
Q 009307          494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW  535 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w  535 (538)
                      +.|++||++.++|..    +....|++|.   .|.|+++++.
T Consensus       468 ~~dD~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~  502 (540)
T 3nsj_A          468 WDDDLLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHA  502 (540)
T ss_dssp             SCCEEEEEEEECCCS----EEEEEEEECS---SSEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEE
Confidence            678999999999972    4456888874   6888887764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.40  E-value=2.5e-14  Score=150.23  Aligned_cols=127  Identities=17%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCC---CCCeEecEEEEEeeCCCCCEEEEEEEec-
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKN---LNPEWNEEYNFTVRDPESQAVELAVYDW-  333 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t---~nP~w~e~f~f~v~~~~~~~L~i~v~d~-  333 (538)
                      ..|.|+|+|++|++|+++|     ||||++++++...  .||+++++|   .||.|||+|.|.+... ...|.++|||+ 
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~   80 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDS   80 (483)
T ss_dssp             EEECC----------------------------------------------------CCEECC-----------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecC
Confidence            4688999999999999876     9999999987543  589999999   9999999999987544 57899999995 


Q ss_pred             c---CCCCCcccEEEEEeCccCCCCCCeEEEEecccccccC-----------------CCCCCccccEEEEEEEEEecc
Q 009307          334 E---QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN-----------------DGQNEKSRGQLVVEFIYKPFK  392 (538)
Q Consensus       334 ~---~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~G~l~l~l~~~p~~  392 (538)
                      |   ..++|++||++.+++.++..+...+.|++|.......                 ..++....|.|++++.|.+..
T Consensus        81 d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A           81 DKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             --------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred             CccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence            4   3678999999999999999887778888874322100                 001123569999999998753

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.33  E-value=4.6e-12  Score=137.48  Aligned_cols=108  Identities=19%  Similarity=0.413  Sum_probs=93.4

Q ss_pred             CceEEEEEEEeeecCCC---C---CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307          416 GGGLLVVIVHEAQDVEG---K---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV  486 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~---~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~  486 (538)
                      ..+.|+|+|++|++|+.   .   +.+||||++++++   .+++|++++++.||+|||.|+|.+... ....|.|+|||+
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~   94 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA   94 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEEC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEEC
Confidence            57899999999999987   3   5799999999984   577999999999999999999999874 456899999999


Q ss_pred             ccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEE
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQI  531 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l  531 (538)
                      +.    ++ |++||++.++|.++..+....+|++|...  +++.+
T Consensus        95 D~----~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           95 NY----VM-DETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             CS----SS-CEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CC----CC-CceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            86    56 99999999999999877777899999753  44443

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.31  E-value=1.4e-11  Score=132.68  Aligned_cols=114  Identities=18%  Similarity=0.294  Sum_probs=95.2

Q ss_pred             CCceEEEEEEEeeecCCCC-----CCCCcEEEEEECC-----eEEEeeeecCC-CCCcccceEEEEecCCCCCCeEEEEE
Q 009307          415 AGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRG-----EERKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEV  483 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~-----~~~dpyv~v~~~~-----~~~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~~l~v~V  483 (538)
                      ...+.|+|+|++|++|+..     +.+||||++.+.+     .+++|++++++ .||+|||.|+|.+..+ ....|.++|
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~V  572 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMV  572 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEEE
Confidence            3678999999999999763     4789999999955     46799999997 9999999999999865 335899999


Q ss_pred             EEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEE
Q 009307          484 CSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR  536 (538)
Q Consensus       484 ~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~  536 (538)
                      ||++.    ++++++||++.++|+++..+.   +|++|.+..     .+.|.|.+++.
T Consensus       573 ~D~D~----~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          573 EDYDS----SSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             EECCS----SSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EEcCC----CCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence            99985    678999999999999986643   689997653     47788888764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.30  E-value=2.2e-13  Score=143.01  Aligned_cols=117  Identities=12%  Similarity=0.212  Sum_probs=20.9

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEEEEECCe-EEEeeeecCC---CCCcccceEEEEecCCCCCCeEEEEEEEc-ccCc
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGE-ERKTKHVKKN---RDPRWEEEFQFMLEEPPTNDRLHVEVCSV-SSRI  490 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~-~~kT~v~~~t---~nP~w~e~f~f~v~~~~~~~~l~v~V~d~-~~~~  490 (538)
                      ..+.|+|+|++|++|+.++  ||||+++++++ ..||++++++   .||.|||.|+|.+...  ...+.++|||+ +.. 
T Consensus         9 ~~~~L~V~VieAk~L~~~d--dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~~-   83 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDKK-   83 (483)
T ss_dssp             EEECC-----------------------------------------------CCEECC----------------------
T ss_pred             eccEEEEEEEEcCCcCCCC--CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCcc-
Confidence            3678999999999998864  99999999886 4599999999   9999999999987542  36899999995 310 


Q ss_pred             cCCCCCceeEEEEEechhhcccceeceEEEeCCC---------------------------CCcEEEEEEEEEe
Q 009307          491 GLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS---------------------------KNGRIQIELQWRT  537 (538)
Q Consensus       491 g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~---------------------------~~G~I~l~~~w~p  537 (538)
                      +.+++|++||++.|+++++..+...++||+|.+.                           ..|.|+|+++|.+
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~  157 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT  157 (483)
T ss_dssp             -----------------------CCEECC--------------------------------------CEEEEEE
T ss_pred             ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence            0045789999999999999887777899999532                           1489999999986

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.24  E-value=9.8e-12  Score=136.40  Aligned_cols=108  Identities=33%  Similarity=0.552  Sum_probs=92.2

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE  334 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~  334 (538)
                      ..+.|.|+|++|++|..+|..|.+||||++++.+.  ...+.+|+++++++||.|||+|.|.+.... ...|.++|||+|
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            35789999999999999999999999999999543  234579999999999999999999987543 457999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      ..++|++||++.++++++.... ...|+.+..
T Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls  280 (674)
T 3pfq_A          250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS  280 (674)
T ss_dssp             SSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred             cccccccccccccchhhhccCC-cccceeecc
Confidence            9999999999999999998654 466777643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.16  E-value=1.4e-10  Score=127.29  Aligned_cols=104  Identities=23%  Similarity=0.501  Sum_probs=89.0

Q ss_pred             ceEEEEEEEeeecCCCC---CCCCcEEEEEE-----CCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307          417 GGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS  488 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~  488 (538)
                      .+.|.|++.+|++|...   +.+||||++.+     ...+++|++++++.||.|||.|.|.+........|.++|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            56899999999999763   68999999999     33567999999999999999999999865445579999999986


Q ss_pred             CccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          489 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       489 ~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                          ++++++||++.++++++..... .+||.|....
T Consensus       251 ----~~~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~~  282 (674)
T 3pfq_A          251 ----TSRNDFMGSLSFGISELQKAGV-DGWFKLLSQE  282 (674)
T ss_dssp             ----SSCCEECCBCCCBTTHHHHCCE-EEEEECBCTT
T ss_pred             ----ccccccccccccchhhhccCCc-ccceeecccc
Confidence                6789999999999999987654 8999997643

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.15  E-value=1.6e-10  Score=127.39  Aligned_cols=118  Identities=17%  Similarity=0.286  Sum_probs=90.2

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCC-CCCCeEec-EEEEE-eeCCCCCEEEEEEEe
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHK-NLNPEWNE-EYNFT-VRDPESQAVELAVYD  332 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~-t~nP~w~e-~f~f~-v~~~~~~~L~i~v~d  332 (538)
                      ...|.|+|++|++|+..    .+||||+|.+.+..   ..+++|+++++ +.||+||| +|.|. +..++...|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            35899999999999853    68999999997521   12358999875 59999999 69998 766666789999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK  392 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (538)
                      +|    |++||++.+||..|..+.   ..++|....     ...-..|.|.+.+.+....
T Consensus       800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~-----g~~l~~atLfv~i~~~~~~  847 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNEA-----NQPLCLPALLIYTEASDYI  847 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCEE---EEEEEECTT-----SCEEEEEEEEEEEEEEECC
T ss_pred             CC----ccEEeeEEEEHHHcCCCc---eEEEecCCC-----CCccCceEEEEEEEEEecC
Confidence            87    789999999999998753   234443210     0122578999999888654

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.12  E-value=2.4e-10  Score=126.02  Aligned_cols=115  Identities=20%  Similarity=0.325  Sum_probs=86.8

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc---cCCeeeee-ecC-CCCCCeEec-EEEE-EeeCCCCCEEEEEE
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED---KLPSKKTT-VKH-KNLNPEWNE-EYNF-TVRDPESQAVELAV  330 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~T~-v~~-~t~nP~w~e-~f~f-~v~~~~~~~L~i~v  330 (538)
                      ..|.|.|+|++|++|+.    +.+||||+|.+.+.   ...+++|+ +++ ++.||+||| +|.| .+..++...|+|.|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46899999999999985    46899999999642   22346898 776 569999999 6999 88766667899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCC-ccccEEEEEEEEE
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE-KSRGQLVVEFIYK  389 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~G~l~l~l~~~  389 (538)
                      ||+|    +++||++.+|++.|..+   ..+++|...      .+. -..+.|.+.+.+.
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~------~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSE------SNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE---EEEEEEECT------TCCEEEEEEEEEEEEEE
T ss_pred             EEeC----CCccceEeeehhhcCCC---cEEEeccCC------CCCCCCceEEEEEEEEE
Confidence            9986    78999999999999865   234555321      111 2346777777653

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.12  E-value=3.3e-10  Score=124.26  Aligned_cols=118  Identities=19%  Similarity=0.352  Sum_probs=89.7

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC----CeeeeeecCC-CCCCeEecE-EEEE-eeCCCCCEEEEEEE
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----PSKKTTVKHK-NLNPEWNEE-YNFT-VRDPESQAVELAVY  331 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~~T~v~~~-t~nP~w~e~-f~f~-v~~~~~~~L~i~v~  331 (538)
                      .+.|+|+|++|++|+.+    .+||||+|.+.+...    .+++|+++++ +.||+|||+ |.|. +..++...|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    689999999976321    3468999875 699999998 9998 76666678999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK  392 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (538)
                      |++    +++||++.+||+.|..+.   ..++|....     ...-..+.|.+.+.+....
T Consensus       725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~-----g~~~~~atLfv~i~~~~~~  773 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNES-----NRPLGLASVFAHIVAKDYV  773 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCEE---EEEEEECTT-----SCEEEEEEEEEEEEEEECC
T ss_pred             ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCC-----CCCCCceEEEEEEEEEecC
Confidence            985    789999999999998763   234543210     0122347888888777543

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.99  E-value=4.9e-09  Score=86.00  Aligned_cols=114  Identities=15%  Similarity=0.239  Sum_probs=85.8

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCC-eeee-eecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccC
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLP-SKKT-TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ  335 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~-~~~T-~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  335 (538)
                      ..+.|+|...++.--+-.......||||.+.+...... ..+| ..++.|..|+|||+|.-.+.+  .+.|.+.|++...
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC
Confidence            34678888866653222222235799999999754321 2355 777889999999999999876  5899999997653


Q ss_pred             CCCCcccEEEEEeCccCC-----CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          336 VGKHDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                          ++++.|.+++++|.     .+...+.|++|            ++.|+|++.+.|+
T Consensus        82 ----~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ----EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF  124 (126)
T ss_dssp             ----EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence                89999999999998     34456788886            4689999999987

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.93  E-value=7.4e-09  Score=113.64  Aligned_cols=108  Identities=18%  Similarity=0.258  Sum_probs=86.6

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEEEEECC-------eEEEeeeecC-CCCCcccce-EEEE-ecCCCCCCeEEEEEEE
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVKK-NRDPRWEEE-FQFM-LEEPPTNDRLHVEVCS  485 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~~-t~nP~w~e~-f~f~-v~~~~~~~~l~v~V~d  485 (538)
                      ..+.|.|+|++|++|+.. .+||||+|.+.+       ++++|+++++ +.||+|||. |+|. +..+ .-..|.++|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p-ela~Lrf~V~D  725 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK-QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP-DLAVVRIIVSE  725 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS-CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG-GGCEEEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC-CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC-CccEEEEEEEe
Confidence            357899999999999864 689999999975       4569999986 699999998 9998 7654 33589999999


Q ss_pred             cccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEE
Q 009307          486 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR  536 (538)
Q Consensus       486 ~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~  536 (538)
                      ++        +++||++.++|+.|..+-   ++.+|.+..     .+.|.|.+..+
T Consensus       726 ~d--------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          726 EN--------GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             TT--------SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cC--------CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEEE
Confidence            74        589999999999986643   578887653     26676766654

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.92  E-value=7.4e-09  Score=86.02  Aligned_cols=114  Identities=16%  Similarity=0.236  Sum_probs=87.5

Q ss_pred             CeeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCccC-Ceeee-eecCCCCCCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307          258 PVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKL-PSKKT-TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE  334 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~-~~~~T-~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~  334 (538)
                      ..+.|+|...++.--+... .....||||.+.+..... ...+| ..++.|..|+|||+|.-.+.+  .+.|.|.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            4567888887766433222 123579999999975432 23567 677789999999999998876  589999999654


Q ss_pred             CCCCCcccEEEEEeCccCC-----CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          335 QVGKHDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      .    +|+..|.+++++|.     .+...+.|++|            ++.|+|++.+.|+
T Consensus        86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~  129 (138)
T 2enj_A           86 V----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYF  129 (138)
T ss_dssp             C----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEEC
T ss_pred             C----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEE
Confidence            3    89999999999998     44566889886            4689999999997

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.92  E-value=7.6e-09  Score=114.13  Aligned_cols=108  Identities=21%  Similarity=0.261  Sum_probs=85.9

Q ss_pred             CceEEEEEEEeeecCCCCCCCCcEEEEEECC------eEEEee-eecC-CCCCcccc-eEEE-EecCCCCCCeEEEEEEE
Q 009307          416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTK-HVKK-NRDPRWEE-EFQF-MLEEPPTNDRLHVEVCS  485 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~-v~~~-t~nP~w~e-~f~f-~v~~~~~~~~l~v~V~d  485 (538)
                      ..+.|.|+|++|++|+. +.+||||+|.+.+      +++||+ ++++ +.||+||| .|+| .+..+ ....|.++|+|
T Consensus       676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~-el~~Lr~~V~D  753 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVME  753 (799)
T ss_dssp             TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEE
T ss_pred             eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccC-CccEEEEEEEE
Confidence            46799999999999986 4789999999954      246899 8875 69999999 6999 78654 33489999999


Q ss_pred             cccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEE
Q 009307          486 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR  536 (538)
Q Consensus       486 ~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~  536 (538)
                      ++        +++||++.++|+.|..+   .++++|.+..     .+.+.|.++++
T Consensus       754 ~d--------~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          754 EG--------NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             TT--------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             eC--------CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            85        58999999999998653   3578887643     36666777664

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.90  E-value=8.2e-09  Score=113.89  Aligned_cols=107  Identities=19%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             ceEEEEEEEeeecCCCCCCCCcEEEEEECC------eEEEeeeecC-CCCCcccc-eEEEE-ecCCCCCCeEEEEEEEcc
Q 009307          417 GGLLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTKHVKK-NRDPRWEE-EFQFM-LEEPPTNDRLHVEVCSVS  487 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~v~~~-t~nP~w~e-~f~f~-v~~~~~~~~l~v~V~d~~  487 (538)
                      ...|.|+|++|++|+.. .+||||+|.+.+      .+++|+++++ +.||+||| .|.|. +..+ ....|.++|||++
T Consensus       724 ~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf~V~D~d  801 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRIAAFEEG  801 (885)
T ss_dssp             CEEEEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEEEEEETT
T ss_pred             ceEEEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEEEEEcCC
Confidence            45799999999999874 689999999965      2469999986 59999999 69998 6554 3358999999975


Q ss_pred             cCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEE
Q 009307          488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR  536 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~  536 (538)
                              +++||++.++|+.|..+-   ++.+|.+..     .|.|.|.+...
T Consensus       802 --------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          802 --------GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             --------TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             --------ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEEE
Confidence                    589999999999986543   467887653     47888888766

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.88  E-value=8.5e-08  Score=78.66  Aligned_cols=108  Identities=12%  Similarity=0.243  Sum_probs=84.7

Q ss_pred             CceEEEEEEEeeec--CCC-CCCCCcEEEEEECCeE----EEe-eeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009307          416 GGGLLVVIVHEAQD--VEG-KHHTNPYARILFRGEE----RKT-KHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS  487 (538)
Q Consensus       416 ~~g~L~v~v~~a~~--L~~-~~~~dpyv~v~~~~~~----~kT-~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~  487 (538)
                      ....|+|.+.++.-  ++. ....||||.+.+....    .+| ...++|..|.||+.|.-.+.+.   ..|.+.|+.+.
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a   80 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA   80 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT---CEEEEEEEEET
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC---EEEEEEEEcCC
Confidence            45678888766653  332 2368999999996543    154 6777899999999999999864   68999999653


Q ss_pred             cCccCCCCCceeEEEEEechhhccc-----ceeceEEEeCCCCCcEEEEEEEEE
Q 009307          488 SRIGLLHPKETLGYIDINLSDVVSN-----KRINEKYHLIDSKNGRIQIELQWR  536 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~G~I~l~~~w~  536 (538)
                              .+++..+++++.+|.++     +..+-|.+|.  ++|+|++.++|.
T Consensus        81 --------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--P~Gkl~~~i~~~  124 (126)
T 1yrk_A           81 --------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMSVQYF  124 (126)
T ss_dssp             --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEE
T ss_pred             --------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEEe
Confidence                    28999999999999953     4567899987  599999999985

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.82  E-value=7.2e-08  Score=80.12  Aligned_cols=108  Identities=13%  Similarity=0.217  Sum_probs=85.2

Q ss_pred             CceEEEEEEEeeecC--CC--CCCCCcEEEEEECCeE----EEe-eeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307          416 GGGLLVVIVHEAQDV--EG--KHHTNPYARILFRGEE----RKT-KHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV  486 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L--~~--~~~~dpyv~v~~~~~~----~kT-~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~  486 (538)
                      ..+.|+|.+.+..--  +.  ....||||.+.+....    .+| ...++|..|.||+.|.-.+.+.   ..|.+.|+.+
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~   84 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG---RVMQIIVKGK   84 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS---CEEEEEEECS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC---eEEEEEEEcC
Confidence            466788888776642  21  3468999999997542    366 6677899999999999998864   6899999954


Q ss_pred             ccCccCCCCCceeEEEEEechhhccc-----ceeceEEEeCCCCCcEEEEEEEEE
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSN-----KRINEKYHLIDSKNGRIQIELQWR  536 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~G~I~l~~~w~  536 (538)
                      .        .+++..++|.+.+|+++     +..+-|.+|.  ++|+|++.++|.
T Consensus        85 a--------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--P~Gkl~v~i~~~  129 (138)
T 2enj_A           85 N--------VDLISETTVELYSLAERCRKNNGKTEIWLELK--PQGRMLMNARYF  129 (138)
T ss_dssp             S--------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--SSCEEEEEEEEC
T ss_pred             C--------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEEE
Confidence            3        38999999999999954     4567899987  599999999984

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=92.19  E-value=2  Score=38.89  Aligned_cols=57  Identities=11%  Similarity=0.177  Sum_probs=40.8

Q ss_pred             CeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCC----CCCcccEEEEEeCcc
Q 009307          295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV----GKHDKMGMNVVPLKE  351 (538)
Q Consensus       295 ~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~----~~d~~lG~~~i~l~~  351 (538)
                      ...+|.|...+.+|.|+|++.+.+...  ....|.|++++...-    ..+..+|.+-+||-.
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            346888889999999999999988743  356899999875421    112356777776643

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=91.34  E-value=1.5  Score=37.53  Aligned_cols=128  Identities=14%  Similarity=0.166  Sum_probs=83.7

Q ss_pred             CCCeeEEEEEEEeecCCccC-CCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC-------CCCEEE
Q 009307          256 RRPVGILHVKVVKAMNLKKK-DLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-------ESQAVE  327 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~-------~~~~L~  327 (538)
                      ..-.+.+.|+|.++.--+.. ...+..+|+.-+.+.=-..+...|.+.. +.+|.+|.+-.+.+...       .+..+.
T Consensus        14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            34568899999988732211 0123457766666654444445677665 78999999888888532       145788


Q ss_pred             EEEEeccCCCCCcccEEEEEeCccCCCCCCe-EEEEecccccccCCCCCC-ccccEEEEEEEEEec
Q 009307          328 LAVYDWEQVGKHDKMGMNVVPLKELTPEEPS-VKTLDLLKNMDLNDGQNE-KSRGQLVVEFIYKPF  391 (538)
Q Consensus       328 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~l~~~~~~~~~~~~-~~~G~l~l~l~~~p~  391 (538)
                      ++++... ...-+.+|.+.|++.++...+.+ .....+.. .     .+. ..-|.|.+.+++...
T Consensus        93 lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g-~-----~g~~~~~G~LeywiRL~~P  151 (156)
T 2yrb_A           93 LEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIG-T-----KGDIPNFGTVEYWFRLRVS  151 (156)
T ss_dssp             EEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECB-S-----SSCCTTSEEEEEEEEEEEC
T ss_pred             EEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEc-C-----CCCcceEEEEEEEEEEecc
Confidence            9998875 33456899999999998866543 23334421 1     112 478999999988754

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=90.72  E-value=2.8  Score=35.78  Aligned_cols=115  Identities=18%  Similarity=0.298  Sum_probs=77.7

Q ss_pred             CceEEEEEEEeeecCCC-----CCCCCcEEEEE--ECC-eEEEeeeecCCCCCcccceEEEEecCCC------CCCeEEE
Q 009307          416 GGGLLVVIVHEAQDVEG-----KHHTNPYARIL--FRG-EERKTKHVKKNRDPRWEEEFQFMLEEPP------TNDRLHV  481 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~-----~~~~dpyv~v~--~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~------~~~~l~v  481 (538)
                      .-+.+.+.|.++. +.+     .+..+|+.-+.  +-. +.+.|.++. ..+|.+|-+-.|.+....      ....+.+
T Consensus        16 gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           16 GENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            5678888988886 322     13456644444  434 445666665 889999998888885321      0236889


Q ss_pred             EEEEcccCccCCCCCceeEEEEEechhhcccc-eeceEEEeCCCC-----CcEEEEEEEEEe
Q 009307          482 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDSK-----NGRIQIELQWRT  537 (538)
Q Consensus       482 ~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~-----~G~I~l~~~w~p  537 (538)
                      ++.....     ..-..||.+.|+|.+++++. .+...-+|.+..     -|.++..++++.
T Consensus        94 ELhqa~g-----~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           94 EVHQAYS-----TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEECS-----SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred             EEEEeeC-----CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence            8887642     24569999999999999764 355566776542     388888888874

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=90.03  E-value=3.1  Score=46.88  Aligned_cols=93  Identities=20%  Similarity=0.260  Sum_probs=61.8

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEee---CCCCCEEEEEEEe
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR---DPESQAVELAVYD  332 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~v~d  332 (538)
                      ...++|+|.++.++.... ....+-||.+.+  |++... ..+|+. ....+|.|||...|.+.   -|....|.++||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            357899999999886432 234577888776  444332 223443 33567889999999875   2447899999998


Q ss_pred             ccCC----CCCcccEEEEEeCccCC
Q 009307          333 WEQV----GKHDKMGMNVVPLKELT  353 (538)
Q Consensus       333 ~~~~----~~d~~lG~~~i~l~~l~  353 (538)
                      ....    ..+..+|.+.++|-+..
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCTT
T ss_pred             ecCccCcccccceeEEeeeeeEccC
Confidence            6542    12357899888887654

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=88.49  E-value=2.1  Score=47.83  Aligned_cols=93  Identities=10%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             CeeEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEee---CCCCCEEEEEEE
Q 009307          258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR---DPESQAVELAVY  331 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~v~  331 (538)
                      -...+.|+|.++.++...   ..++-||.+.+  |+.... ...|+.+.-..+|.|||...|.+.   -|....|.+.||
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            346899999999998754   34677887665  444331 224544445678999999999875   244789999999


Q ss_pred             eccCC--C----------CCcccEEEEEeCccCC
Q 009307          332 DWEQV--G----------KHDKMGMNVVPLKELT  353 (538)
Q Consensus       332 d~~~~--~----------~d~~lG~~~i~l~~l~  353 (538)
                      +....  +          .+..+|.+.+++-+-.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCTT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECCc
Confidence            96421  1          2347788887776543

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=85.70  E-value=2.8  Score=46.82  Aligned_cols=94  Identities=14%  Similarity=0.234  Sum_probs=63.3

Q ss_pred             ceEEEEEEEeeecCCCCCCCCcEEEEEE--CCe----EEEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEccc
Q 009307          417 GGLLVVIVHEAQDVEGKHHTNPYARILF--RGE----ERKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSS  488 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~--~~~----~~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~  488 (538)
                      ...+.|+|.++.++......+-||++.+  |++    ...|+.+....+|.|||-.+|.+  .+.|.+..|.++||+...
T Consensus       216 ~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~  295 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVE  295 (940)
T ss_dssp             CSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC-
T ss_pred             CCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecC
Confidence            4579999999999876555677887765  443    24666666688999999877655  566677899999998521


Q ss_pred             C--------ccCCCCCceeEEEEEechhhc
Q 009307          489 R--------IGLLHPKETLGYIDINLSDVV  510 (538)
Q Consensus       489 ~--------~g~~~~d~~lG~~~i~l~~l~  510 (538)
                      .        .+--..+..+|.++++|-+-.
T Consensus       296 ~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          296 KAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             ---------------CEEEEEEEEESBCTT
T ss_pred             CccCccccccccccccceEEEEeeeEECCc
Confidence            0        000012459999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	538
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-27
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-07
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-23
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-05
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-19
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-09
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-19
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-06
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-18
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-06
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-18
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	4e-18
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-07
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-18
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-05
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	7e-18
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	5e-05
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	9e-18
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-04
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-17
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	8e-06
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-16
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-06
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-16
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	6e-16
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-04
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	7e-14
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-07
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-13
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	0.002
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-08
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-11
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-10
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	0.002

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  104 bits (261), Expect = 3e-27
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
           S     P G L V +V A  L+  D L   DPYV+L         K    +     PEWN
Sbjct: 2   SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59

Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
           E + FTV +  ++     ++D +   + D +G   +PL+ +  E         +     N
Sbjct: 60  ETFIFTVSEGTTELK-AKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111

Query: 372 DGQNEKSRGQLVVEFIYKPFKEED 395
             ++E+ +G++ V   +KP     
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 13/125 (10%)

Query: 418 GLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHV-KKNRDPRWEEEFQFMLEEP 473
           G L V++  A+ +E      + +PY ++  R +++K+         P W E F F + E 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 474 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN---GRIQ 530
                L  ++        +    + +G   I L  V     I    + +       G I 
Sbjct: 70  --TTELKAKIFDKD----VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIW 123

Query: 531 IELQW 535
           + L +
Sbjct: 124 VALSF 128

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.9 bits (230), Expect = 5e-23
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           Y      L V +++A  L   D+ G SDPYVK+ +  DK    +T V  K LNP +NE++
Sbjct: 29  YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 88

Query: 315 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
            F V   +   + + +AVYD+++  KHD +G   VP+  +     + +  DL 
Sbjct: 89  TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 34/160 (21%)

Query: 368 MDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEA 427
           ++  + + E+  G+L     Y     +                         L+V + +A
Sbjct: 9   VEKEEPKEEEKLGKLQYSLDYDFQNNQ-------------------------LLVGIIQA 43

Query: 428 QD---VEGKHHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 481
            +   ++    ++PY ++    ++    +TK  +K  +P + E+F F +       +  V
Sbjct: 44  AELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLV 103

Query: 482 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521
                  R       + +G   + ++ V       E   L
Sbjct: 104 MAVYDFDRFS---KHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--PSKKTTVKHKNLNPEWNEEYNFT 317
            +L V V  A NL   D  G SDPYVKLK+  D      +KT     +LNPEWNE + F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 318 VRDPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
           +++ +  + + + ++DW+   ++D MG     + EL    
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 114

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 13/118 (11%)

Query: 418 GLLVVIVHEAQDV---EGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFM 469
            +L+V+V +A+++   +    ++PY ++          ++KTK +K + +P W E F+F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 470 LEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 527
           L+E   + RL VE+        L    + +G +   +S+ +    ++  + L+  + G
Sbjct: 75  LKESDKDRRLSVEIWD----WDLTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEEG 127

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 3e-19
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 262 LHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
             V V++A  + K    D+L   DPYV+L I+      K+T   + ++NP WNE + F +
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366
              +   +E+ + D       + +G     +  +   E         +
Sbjct: 65  DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ 111

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 13/127 (10%)

Query: 420 LVVIVHEAQDVEGKHH------TNPYARILFRGEERKTKHVKKNRDPR--WEEEFQFMLE 471
             V+V  A  V            +PY  +         K  +   +       E    + 
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 472 EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQI 531
           +P   + L + +   +         ETLG     +S +   ++    +         +++
Sbjct: 65  DPNQENVLEITLMDANYV-----MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEM 119

Query: 532 ELQWRTA 538
            L+  ++
Sbjct: 120 SLEVASS 126

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.4 bits (195), Expect = 2e-18
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y+     L V V+KA +L K D+ G SDPYVK+ +     ++  KKT VK    N  +NE
Sbjct: 10  YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 69

Query: 313 EYNFTVRDPESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
            + F +     +   VE  V D E+  +++ +G  V+         
Sbjct: 70  LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG 115

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 18/129 (13%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
             L V+V +A+     +    ++PY ++       R  ++KT   K   +  + E F F 
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 470 L-EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGR 528
           +  E      +   V             E +G + +  +             + D    +
Sbjct: 75  IPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRRQ 128

Query: 529 IQIELQWRT 537
           I    +W  
Sbjct: 129 IA---KWHM 134

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 257 RPVGILHVKVVKAMNLKK--KDLLGASDPYVKLK---ITEDKLPSKKTTVKHKNLNPEWN 311
           RP   L V+++    L K  K+     DP V ++   +  D    +   + +   NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363
            E+ F V  P+   V   V D++   K+D +G + +P   L      V  L 
Sbjct: 61  MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 4e-18
 Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK--KTTVKHKNLNPEWNE 312
           + +    L V ++ A +L  ++     +PYVK+    D+      +T    K L P+WN+
Sbjct: 9   FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 68

Query: 313 EYNFTVRDP---ESQAVELAVYDWEQVGKH--DKMGMNVVPLKELTPEE 356
            + ++         + +E+ ++D  +V +   + +G  ++ L+    ++
Sbjct: 69  TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 117

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
           G  L+V +  A+D    E     NPY +I F        +R+TK VKK  +P+W + F +
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72

Query: 469 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 514
                       +E+             E LG I I L   + +  
Sbjct: 73  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 118

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.7 bits (193), Expect = 7e-18
 Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
           Y    G L V +++A NLKK D+ G SDPYVK+ + ++  +L  KKTT+K   LNP +NE
Sbjct: 20  YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79

Query: 313 EYNFTVRDPESQAVELAV--YDWEQVGKHDKMGMNVVPLKELTPE 355
            ++F V   + Q V++ V   D++++GK+D +G   V       E
Sbjct: 80  SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
           G L V++ EA++++        +PY +I       R +++KT   K   +P + E F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 470 LEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGR 528
           +        ++ V V         +   + +G + +  +       +     ++ +    
Sbjct: 85  VPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNST--GAELRHWSDMLANPRRP 138

Query: 529 IQIELQWRT 537
           I    QW T
Sbjct: 139 IA---QWHT 144

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 7e-18
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNF 316
           + VGIL VKV+KA +L   D  G SDP+  L++  D+L +      +KNLNPEWN+ + F
Sbjct: 3   KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59

Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
            ++D     +E+ V+D +     D +G   +PL  +   +P+   L             +
Sbjct: 60  PIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-------EQ 111

Query: 377 KSRGQLVVEFIY 388
             +G + +E   
Sbjct: 112 AFKGVIYLEMDL 123

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP 474
           G+L V V +A D+     +   +P+  +    +  +T  V KN +P W + F F +++  
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 65

Query: 475 TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR---INEKYHLIDSKNGRIQI 531
               + V             P + LG + I L  +   +    + +   L  +  G I +
Sbjct: 66  DVLEVTVFDE------DGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYL 119

Query: 532 ELQ 534
           E+ 
Sbjct: 120 EMD 122

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 9e-18
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
           Y        V + +A  L   D     SDPY+K+ I  +K    KT V  K L+P ++E 
Sbjct: 17  YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76

Query: 314 YNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLLKN 367
           + F           A+   +  +++  + D +G  ++PL  +   E   +   +++  
Sbjct: 77  FTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 418 GLLVVIVHEAQDV----EGKHHTNPYARILFRGEERK---TKHVKKNRDPRWEEEFQFML 470
              VV + EA+ +    E    ++PY ++    E++    T+ ++K  DP ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 471 EEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV-VSNKRINEKYHLIDSK 525
                     LH  + S           + +G + I LS + +S  ++     +I   
Sbjct: 82  IPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.1 bits (186), Expect = 4e-17
 Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----------KKTTVKHKNLNP 308
           G L + +++A NL  +D  G SDP+VK+ +   +              ++T    K+LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 309 EWNEEYNFTV---RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
           EWN+   +          + +E+ V+D+++   +D +G  ++ L   +  + + +   L 
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

Query: 366 K 366
           +
Sbjct: 138 E 138

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 23/123 (18%)

Query: 418 GLLVVIVHEAQDVEGKH---HTNPYARILFRGEE--------------RKTKHVKKNRDP 460
           G L++ + +A+++  +    +++P+ ++                    R+TK+V+K+ +P
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 461 RWEEEFQF--MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK 518
            W +   +  +  E      L V V             + LG + I+LS           
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVW----DYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133

Query: 519 YHL 521
           Y L
Sbjct: 134 YPL 136

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.1 bits (181), Expect = 2e-16
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 312
           Y    G L V +++ ++L   D  G SDP+VKL +  D     K  T +K K LNPE+NE
Sbjct: 10  YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 69

Query: 313 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKN 367
           E+ + ++  +     L  +V+D++    +D +G   + +             + LKN
Sbjct: 70  EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLK--HWYECLKN 124

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 20/128 (15%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFM 469
           G L+V +        ++   +++P+ ++  +       + KT+  KK  +P + EEF + 
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 470 LEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 529
           +     +D     +        +    + +G   + +S     +R+   Y  + +K+ +I
Sbjct: 75  I---KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKKI 129

Query: 530 QIELQWRT 537
           +   +W  
Sbjct: 130 E---RWHQ 134

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.5 bits (179), Expect = 2e-16
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 4/116 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
           Y      L V++++A++L  KD  G SDPYVK+ +  D+    +T V  K LNP +NE +
Sbjct: 13  YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF 72

Query: 315 NFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL--DLLK 366
            F+V   E   + +  +VYD+++  +HD +G  V+       E+P  + L  D+L+
Sbjct: 73  QFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.9 bits (178), Expect = 6e-16
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 312
           Y    G+L V ++KA NLK  DL G SDPYVK  +  +    KK  T++K   LNP +NE
Sbjct: 15  YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 74

Query: 313 EYNFTVRDPESQAVELAV--YDWEQVGKHDKMGMNVVPLKELTPEE 356
              F V     + V L++   D++ +G ++ +G+  V  +   P  
Sbjct: 75  ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
             L + V+ A   + K       PYV++ +       KKT   +   +P+W +     V 
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62

Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL-NDGQNEKS 378
                 +   V+  + +     +G   + + E   +  ++K  +++  + L  D +  ++
Sbjct: 63  PV--SKLHFRVWSHQTLKSDVLLGTAALDIYET-LKSNNMKLEEVVVTLQLGGDKEPTET 119

Query: 379 RGQLVVEF 386
            G L +  
Sbjct: 120 IGDLSICL 127

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 20/131 (15%)

Query: 418 GLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP 474
             L + V  A+  E K      +PY  +   G+ +KT+       P+W++    ++    
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65

Query: 475 TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-----KRINEKYHLIDSKN--- 526
                H  V S  +    L     LG   +++ + + +     + +     L   K    
Sbjct: 66  KL---HFRVWSHQT----LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTE 118

Query: 527 --GRIQIELQW 535
             G + I L  
Sbjct: 119 TIGDLSICLDG 129

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 7e-14
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 245 EVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKH 303
           + P L     Y      L V  ++A+     +  G  D YV+  +         +T +K 
Sbjct: 11  QAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKK 67

Query: 304 KNLNPEWNEEYNFTVRDPESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKT 361
           + L+  W E     + + E     + L +   ++  +H   G   + L   +    + + 
Sbjct: 68  RQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQW 127

Query: 362 LDLLK 366
            +L  
Sbjct: 128 GELKT 132

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 17/112 (15%), Positives = 24/112 (21%), Gaps = 7/112 (6%)

Query: 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP 473
             L V   EA         + Y +            +T   K+     WEE     L E 
Sbjct: 26  AELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85

Query: 474 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525
                          R          G + + L          +   L  S 
Sbjct: 86  ELPTATLTLTLRTCDRFSRHSV---AGELRLGLDGTSVPLGAAQWGELKTSG 134

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 260 GILHVKVVKAMNLKKKDLL-----------GASDPYVKLKITEDKLPSKKTTVKHKNLNP 308
           G+L +K+ +A++LK                   DPY+ L +  D     +T  K K  +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSP 63

Query: 309 EWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
            W++E+   V +      ELAV+    +G  D +    +  +EL          
Sbjct: 64  AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 24/138 (17%)

Query: 418 GLLVVIVHEAQDV--------------EGKHHTNPYARILFRG-EERKTKHVKKNRDPRW 462
           GLL + + EA  +                    +PY  +        +T   +K   P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYH 520
            +EF   +        L V   +       +   + +    I   +++ N  +   +   
Sbjct: 66  HDEFVTDV-CNGRKIELAVFHDA------PIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 521 LIDSKNGRIQIELQWRTA 538
           L       + I+L   + 
Sbjct: 119 LEPEGKVYVIIDLSGSSG 136

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 11/117 (9%)

Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
            +L V V KA     ++     + YV LK+       K TT+  +   P W +++ F + 
Sbjct: 2   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 54

Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL--TPEEPSVKTLDLLKNMDLNDGQ 374
             +     + V++   +     +G   +PL+ +  + EE   + L L     + D +
Sbjct: 55  RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 109

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
            LL V V +A+    +   N Y   L     + T    +   P WE++F F +     + 
Sbjct: 2   SLLCVGVKKAKFDGAQEKFNTYV-TLKVQNVKSTTIAVRGSQPSWEQDFMFEINRL--DL 58

Query: 478 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVV-SNKRINEKYHLIDSKNGRIQIELQ 534
            L VEV +             +G + I L  +  SN+    ++  +DS+      E+ 
Sbjct: 59  GLTVEVWNKGL-----IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKI-----TEDKLPSKKTTVKHKNLNPEWNEE--Y 314
           L + V+    L ++        YV++++        +    K +    ++NP W EE   
Sbjct: 3   LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 315 NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
              +  PE  ++ +AV +      +  +G  ++P+  L      +     
Sbjct: 59  FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 275 KDLLGASDPYVKLKITEDKLP--SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332
           +    AS P+  +K+ E       K    K   + PEW   ++  + +     +++ +  
Sbjct: 18  QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV--IQIVLMR 75

Query: 333 WEQVGKHD-KMGMNVVPLKELTPEEPSVKTLDLLKNMDL 370
             +    +  +G++V+  +       +   LDL     +
Sbjct: 76  AAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKV 114

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 11/123 (8%), Positives = 34/123 (27%), Gaps = 15/123 (12%)

Query: 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE-----RKTKHVKKNRDPRWEEEFQFMLEE 472
                 +   Q  +    + P+  +  +        +     K    P W+  F   +  
Sbjct: 8   SFNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-- 63

Query: 473 PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIE 532
                 + + +   +        + T+G   +      +N +      L      ++ + 
Sbjct: 64  -YEGRVIQIVLMRAAEDPM---SEVTVGVSVLAERCKKNNGKAEFWLDL--QPQAKVLMC 117

Query: 533 LQW 535
           +Q+
Sbjct: 118 VQY 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	538
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.88
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.86
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.81
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.8
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.79
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.78
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.78
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.77
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.77
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.76
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.76
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.73
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.73
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.72
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.72
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.71
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.71
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.69
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.69
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.68
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.68
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.67
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.67
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.66
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.66
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.64
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.63
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.62
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.6
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.56
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.54
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.53
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.35
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.21
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	95.48
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	90.13

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.6e-23  Score=172.92  Aligned_cols=122  Identities=33%  Similarity=0.552  Sum_probs=104.6

Q ss_pred             CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307          257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV  336 (538)
Q Consensus       257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  336 (538)
                      ++.|.|+|+|++|++|+.++..|++||||+++++++.   ++|++++++.||.|||+|.|.+.++ .+.|.|+|||++..
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence            4789999999999999999999999999999998765   5999999999999999999999876 57899999999999


Q ss_pred             CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          337 GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       337 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      ++|++||++.++++++..+..+++++...   .    ..++.+|+|+++++|.
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~---~----~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQPNCYVLKNK---D----LEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSCCEECCCBCS---C----TTSCCSSEEEEEEEEE
T ss_pred             cCcceEEEEEEEHHHCCCCCceEEEcccc---C----CCCceeEEEEEEEEEE
Confidence            99999999999999998776554433221   1    1245679999999876

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=8.4e-22  Score=169.43  Aligned_cols=127  Identities=28%  Similarity=0.521  Sum_probs=106.2

Q ss_pred             cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCCCCEEEEEEEe
Q 009307          254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYD  332 (538)
Q Consensus       254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d  332 (538)
                      ....|.|+|+|+|++|++|+..|..|++||||+++++++.   .+|++++ ++.||.|||+|.|.+.+. ...|.|+|||
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~---~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d   79 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD   79 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred             CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeee---EEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence            3456899999999999999999989999999999998765   3677765 689999999999999875 5679999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK  392 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (538)
                      ++..++|++||++.++|.++... .....|+.+.+        +++.+|+|+++++|.|..
T Consensus        80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred             ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeCC
Confidence            99999999999999999997543 33345655533        356789999999999853

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.6e-21  Score=161.12  Aligned_cols=121  Identities=21%  Similarity=0.362  Sum_probs=105.0

Q ss_pred             eeEEEEEEEeecCCccC---CCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccC
Q 009307          259 VGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ  335 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  335 (538)
                      .+.|+|+|++|+||+..   |..|.+||||++++++.....++|+++.++.||.|||+|.|.+.+.....|.++|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999864   445899999999998766566799999999999999999999988777899999999986


Q ss_pred             CCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      . +|++||++.++|+++..+.....|++|.          ....|+|++++++.|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence            4 6899999999999999888888899882          345799999988765

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=153.15  Aligned_cols=116  Identities=18%  Similarity=0.395  Sum_probs=102.9

Q ss_pred             ceEEEEEEEeeecCCCC------CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009307          417 GGLLVVIVHEAQDVEGK------HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS  487 (538)
Q Consensus       417 ~g~L~v~v~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~  487 (538)
                      ++.|+|+|++|+||+..      +.+||||++.+++   +.++|++++++.||.|||.|.|.+.+. ....|.++|||++
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC
Confidence            67899999999999863      5789999999976   567999999999999999999999764 4568999999987


Q ss_pred             cCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEEEeC
Q 009307          488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA  538 (538)
Q Consensus       488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w~p~  538 (538)
                      .     .+|++||++.++|+++..+.....||+|.+.++|+|++++++.||
T Consensus        81 ~-----~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~s  126 (126)
T d1rlwa_          81 Y-----VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVASS  126 (126)
T ss_dssp             S-----SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCCC
T ss_pred             C-----CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEeC
Confidence            4     468999999999999988888889999998889999999999886

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.80  E-value=2.7e-19  Score=153.14  Aligned_cols=118  Identities=25%  Similarity=0.417  Sum_probs=100.5

Q ss_pred             CeeEEEEEEEeecCCccCC-----------CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEE
Q 009307          258 PVGILHVKVVKAMNLKKKD-----------LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAV  326 (538)
Q Consensus       258 ~~g~L~V~v~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L  326 (538)
                      -.|.|+|+|++|++|++.+           ..+.+||||+++++++..  .+|++++++.||.|||+|.|.+.+  .+.|
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l   79 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence            4699999999999998753           346789999999987653  589999999999999999999975  4789


Q ss_pred             EEEEEeccCCCCCcccEEEEEeCccCCCCCC--eEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307          327 ELAVYDWEQVGKHDKMGMNVVPLKELTPEEP--SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF  391 (538)
Q Consensus       327 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  391 (538)
                      .|+|||++.+++|++||++.++|+++..+..  ...|++|            ...|++++.+.+.|.
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~p~G~v~l~v~~~~~  134 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC------------CCCcEEEEEEEEEeC
Confidence            9999999999999999999999999976643  4568876            246999999999874

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=6.6e-19  Score=151.02  Aligned_cols=118  Identities=20%  Similarity=0.427  Sum_probs=101.4

Q ss_pred             CCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009307          415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI  490 (538)
Q Consensus       415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~  490 (538)
                      ...|.|+|+|++|++|+..   +.+||||+++++++.++|++++ ++.||.|||.|+|.+.+.  ...|+|+|||++.  
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~--   82 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDV--   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSS--
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecC--
Confidence            3579999999999999864   6899999999999999999887 589999999999999863  3579999999985  


Q ss_pred             cCCCCCceeEEEEEechhhcccc-eeceEEEeCCCC--CcEEEEEEEEEeC
Q 009307          491 GLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDSK--NGRIQIELQWRTA  538 (538)
Q Consensus       491 g~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~--~G~I~l~~~w~p~  538 (538)
                        +++|++||++.|+|.++.... ....||++...+  .|+|++++.|+|+
T Consensus        83 --~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          83 --GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             --CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             --CCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence              578899999999999987654 446799986443  5999999999995

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.5e-19  Score=149.36  Aligned_cols=113  Identities=26%  Similarity=0.421  Sum_probs=97.9

Q ss_pred             CceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      +.|.|+|+|++|++|+..   +.+||||++.++++.++|++++++.||.|||.|+|.+.++  .+.|.++|||++.    
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~----   77 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG----   77 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET----
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccC----
Confidence            579999999999999864   5789999999999999999999999999999999999864  3689999999875    


Q ss_pred             CCCCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEEE
Q 009307          493 LHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWR  536 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w~  536 (538)
                      +++|++||++.++|+++..+.  .+||.|...     .+|+|+|++++-
T Consensus        78 ~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          78 DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CcCcceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            567899999999999987654  578887542     369999998863

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.5e-19  Score=150.56  Aligned_cols=122  Identities=19%  Similarity=0.264  Sum_probs=98.0

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      .+.|.|+|++|++++.++..+++||||++.++++.   ++|++++++.||.|||.|.|.+..  .+.|.|+|||++.+++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~   79 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS   79 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence            48899999999999998888899999999999865   589999999999999999999965  4789999999999999


Q ss_pred             CcccEEEEEeCccCCCC-----CCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          339 HDKMGMNVVPLKELTPE-----EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      |++||++.++|.++...     .....++.+...     .......|+|.+.+.+..
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-----~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEE
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-----CCCceEEEEEEEEEeeEE
Confidence            99999999999987432     223444444221     123567799999887654

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=6.1e-19  Score=150.37  Aligned_cols=118  Identities=23%  Similarity=0.510  Sum_probs=98.9

Q ss_pred             cccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEE-----CCeEE
Q 009307          378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEER  449 (538)
Q Consensus       378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~  449 (538)
                      .+|+|++++.+.                           .+.|.|+|++|+||+..   +.+||||++++     +..++
T Consensus         2 ~rG~i~l~~~~~---------------------------~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~   54 (132)
T d1a25a_           2 RRGRIYIQAHID---------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ   54 (132)
T ss_dssp             TTCEEEEEEEES---------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCE
T ss_pred             cccEEEEEEEec---------------------------CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCcccc
Confidence            479999998773                           56899999999999864   57899999999     34567


Q ss_pred             EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCc
Q 009307          450 KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG  527 (538)
Q Consensus       450 kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G  527 (538)
                      +|++++++.||.|||.|.|.+........|.|+|||++.    +++|++||++.++|+++..+ ..++||+|.+.+.|
T Consensus        55 kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          55 KTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             ECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             EEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC----CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence            999999999999999999999765444589999999986    67889999999999998654 46789999865444

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.77  E-value=2e-18  Score=147.74  Aligned_cols=114  Identities=16%  Similarity=0.306  Sum_probs=99.1

Q ss_pred             CceEEEEEEEeeecCCC--------------CCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009307          416 GGGLLVVIVHEAQDVEG--------------KHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH  480 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~--------------~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~  480 (538)
                      -+|.|+|+|.+|++|++              .+..||||+++++++. .+|++++++.||.|||.|.|.+.+.   +.|.
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---~~l~   80 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC---CceE
Confidence            37999999999999974              2468999999999866 4899999999999999999999753   6899


Q ss_pred             EEEEEcccCccCCCCCceeEEEEEechhhcccc--eeceEEEeCCCCCcEEEEEEEEEeC
Q 009307          481 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK--RINEKYHLIDSKNGRIQIELQWRTA  538 (538)
Q Consensus       481 v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~G~I~l~~~w~p~  538 (538)
                      ++|||++.    +++|++||.+.++|+++..+.  ..+.||+|.  ++|+|+++++++|+
T Consensus        81 i~V~d~~~----~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--p~G~v~l~v~~~~~  134 (136)
T d1gmia_          81 LAVFHDAP----IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCS----SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEEE
T ss_pred             EEEEEecC----CCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--CCcEEEEEEEEEeC
Confidence            99999875    678999999999999998754  467899997  58999999999884

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.2e-18  Score=150.65  Aligned_cols=110  Identities=34%  Similarity=0.507  Sum_probs=97.2

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....+.|.|+|++|+||+.++..|.+||||++++.+......+|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d  108 (143)
T d1rsya_          29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence            4456789999999999999999889999999999966555567999999999999999999987533  36789999999


Q ss_pred             ccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ++..+++++||++.++|+++..++....|++|
T Consensus       109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  140 (143)
T d1rsya_         109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL  140 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred             cCCCCCCcEEEEEEEEchhccCCCCCccEEeC
Confidence            99999999999999999999888888889887

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.8e-18  Score=147.46  Aligned_cols=107  Identities=34%  Similarity=0.547  Sum_probs=92.0

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEeccC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ  335 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~~  335 (538)
                      .+.|.|+|++|+||+.+|..|.+||||++++.+.  ...+++|+++++|.||.|||+|.|.+.... ...|.|+|||+|.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            5789999999999999999999999999999543  234578999999999999999999987543 4689999999999


Q ss_pred             CCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      .++|++||++.++++++..+ ....|++|..
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            99999999999999998755 4567888743

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=3.5e-18  Score=147.65  Aligned_cols=120  Identities=18%  Similarity=0.316  Sum_probs=100.2

Q ss_pred             CCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEE---CCeE
Q 009307          375 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEE  448 (538)
Q Consensus       375 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~  448 (538)
                      .....|+|++++.|.+                         ..+.|.|+|++|+||+..   +.+||||++++   +.+.
T Consensus        16 ~~~~~G~l~~sl~y~~-------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~   70 (143)
T d1rsya_          16 EEEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKK   70 (143)
T ss_dssp             --CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSC
T ss_pred             chhcceEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCee
Confidence            3557899999999975                         366899999999999864   57899999999   3456


Q ss_pred             EEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307          449 RKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID  523 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  523 (538)
                      .+|++++++.||.|||.|.|.+.... ....|.|+|||++.    ++++++||++.++|+++..+....+||+|+.
T Consensus        71 ~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          71 FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             EEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC----CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            79999999999999999999875422 23579999999875    5788999999999999987777789999974

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.8e-18  Score=146.94  Aligned_cols=111  Identities=31%  Similarity=0.471  Sum_probs=92.0

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD  332 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  332 (538)
                      +....+.|.|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d   92 (130)
T d1dqva1          13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   92 (130)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence            4557789999999999999999889999999999976655567999999999999999999998643  35679999999


Q ss_pred             ccCCCCCcccEEEEEeCccC-CCC-CCeEEEEecc
Q 009307          333 WEQVGKHDKMGMNVVPLKEL-TPE-EPSVKTLDLL  365 (538)
Q Consensus       333 ~~~~~~d~~lG~~~i~l~~l-~~~-~~~~~~~~l~  365 (538)
                      ++.+++|++||++.+++... ... .....|++|.
T Consensus        93 ~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~  127 (130)
T d1dqva1          93 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL  127 (130)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred             cCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence            99999999999999986543 322 2344577764

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=6.4e-18  Score=143.46  Aligned_cols=119  Identities=20%  Similarity=0.330  Sum_probs=96.2

Q ss_pred             ccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEE
Q 009307          377 KSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERK  450 (538)
Q Consensus       377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~k  450 (538)
                      .+.|+|.++++|.|                         ..+.|.|+|++|+||+..   +.+||||++++.   .++++
T Consensus         2 ~p~G~l~~sl~y~~-------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~k   56 (130)
T d1dqva1           2 APCGRISFALRYLY-------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQ   56 (130)
T ss_dssp             CSSCEEEEEEECCS-------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEE
T ss_pred             CCcEEEEEEEEEEC-------------------------CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEe
Confidence            45799999999975                         377999999999999763   578999999994   34679


Q ss_pred             eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc--ceeceEEEeCCC
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLIDS  524 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~  524 (538)
                      |++++++.||.|||.|.|.+..... ...|.|+|||++.    ++++++||++.|++...+..  .....||+|.+.
T Consensus        57 T~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~----~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          57 TKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             CCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             ceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC----CCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            9999999999999999999865322 3479999999975    67899999999986544332  234579999864

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.1e-17  Score=139.33  Aligned_cols=122  Identities=25%  Similarity=0.431  Sum_probs=90.9

Q ss_pred             eEEEEEEEeecCCccC--CCCCCCCcEEEEEEcCcc--CCeeeeeecCC-CCCCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307          260 GILHVKVVKAMNLKKK--DLLGASDPYVKLKITEDK--LPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWE  334 (538)
Q Consensus       260 g~L~V~v~~a~~L~~~--d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~  334 (538)
                      ..|+|+|++|++|+..  +..+++||||++++.+..  ...++|+++++ +.||.|||+|.|.+..+....|.++|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  456789999999996422  23468887764 579999999999988776788999999999


Q ss_pred             CCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307          335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK  389 (538)
Q Consensus       335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~  389 (538)
                      ..++|++||++.++|+++..+   ..+++|....     ...-..++|.+++.+.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~-----g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN-----GDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT-----SCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC-----cCCCCCCEEEEEEEEE
Confidence            999999999999999999765   2356653210     0122456777777653

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3e-18  Score=148.06  Aligned_cols=108  Identities=25%  Similarity=0.439  Sum_probs=92.2

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC-----------CeeeeeecCCCCCCeEecEEEEEeeC---CCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-----------PSKKTTVKHKNLNPEWNEEYNFTVRD---PESQ  324 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~  324 (538)
                      .|.|.|+|++|+||+.+|..|.+||||++++.+...           .++||++++++.||.|||+|.|....   ....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            588999999999999999999999999999954321           12479999999999999999997432   2367


Q ss_pred             EEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          325 AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       325 ~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      .|.|+|||++.+++|++||++.++|.++..+.....|++|..
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~  138 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence            899999999999999999999999999988877778888754

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-17  Score=140.32  Aligned_cols=110  Identities=24%  Similarity=0.406  Sum_probs=90.5

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCC-CCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+.++..+ .+||||++++.+.....++|++++++.||.|||+|.|.....   ....|+|+|
T Consensus        17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V   96 (138)
T d1ugka_          17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence            4456689999999999999887665 479999999976655567999999999999999999974322   256899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCC-CeEEEEec
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDL  364 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l  364 (538)
                      ||++.+++|++||++.++|+++...+ ....|..+
T Consensus        97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            99999999999999999999986543 45566654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.8e-17  Score=136.62  Aligned_cols=121  Identities=18%  Similarity=0.318  Sum_probs=90.6

Q ss_pred             eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      .+.|.|+|++|++|.+++   +.||||++++++.+   .+|.+++ +.||.|||+|.|.+.++ .+.|.|+|||++.. +
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~   71 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-W   71 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-C
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-C
Confidence            368999999999999865   67999999998754   4787775 55999999999999877 57899999999865 6


Q ss_pred             CcccEEEEEeCccCCCC--CCeEEEEecccccccCCC----CCCccccEEEEEEEE
Q 009307          339 HDKMGMNVVPLKELTPE--EPSVKTLDLLKNMDLNDG----QNEKSRGQLVVEFIY  388 (538)
Q Consensus       339 d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~~----~~~~~~G~l~l~l~~  388 (538)
                      |++||++.|+|+++...  .....|+.|.........    ......+.|.++++|
T Consensus        72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            89999999999999743  344567777432211100    012244577777776

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.5e-17  Score=137.55  Aligned_cols=120  Identities=17%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCCCCCCcEEEEEECC----eEEEe
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKT  451 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT  451 (538)
                      ....|+|++++.|.+                         ..+.|.|+|++|++|+..+.+||||++++.+    ..++|
T Consensus         9 ~~~~~~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT   63 (138)
T d1wfma_           9 WNQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT   63 (138)
T ss_dssp             CSSCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEEC
T ss_pred             CCcCCEEEEEEEECC-------------------------CCCEEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceee
Confidence            456799999999984                         3568999999999999888899999999953    23589


Q ss_pred             eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307          452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS  524 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  524 (538)
                      ++++++.||+|||.|.|.+..... ...|.|+|||.+.    ++++++||++.|+|.++........|++|...
T Consensus        64 ~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_          64 ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             eEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc----cccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            999999999999999999875432 3479999999885    67899999999999998766667899999865

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.3e-17  Score=138.25  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=92.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc-CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY  331 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  331 (538)
                      ++...+.|.|+|++|++|+.   .|.+||||++++.+.. ...++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~   97 (138)
T d1wfma_          21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR   97 (138)
T ss_dssp             EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred             ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence            45567899999999999953   4778999999996542 3346899999999999999999998643  3678999999


Q ss_pred             eccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307          332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK  366 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  366 (538)
                      |++.++++++||++.|+|.++........|++|..
T Consensus        98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            99999999999999999999988877888998843

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.9e-16  Score=132.93  Aligned_cols=110  Identities=23%  Similarity=0.291  Sum_probs=91.6

Q ss_pred             eEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCc
Q 009307          418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKE  497 (538)
Q Consensus       418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~  497 (538)
                      +.|+|+|.+|++|.+++..||||++.+++.+.+|.+++ +.||.|||.|.|.+.++  .+.|.++|||++.     ..|+
T Consensus         2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~-----~~d~   73 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGL-----IWDT   73 (128)
T ss_dssp             EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCS-----SCEE
T ss_pred             eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCC-----cCCc
Confidence            57999999999999988999999999999988998886 45999999999999875  4689999999864     3689


Q ss_pred             eeEEEEEechhhccc--ceeceEEEeCCCC--------------CcEEEEEEEE
Q 009307          498 TLGYIDINLSDVVSN--KRINEKYHLIDSK--------------NGRIQIELQW  535 (538)
Q Consensus       498 ~lG~~~i~l~~l~~~--~~~~~~~~L~~~~--------------~G~I~l~~~w  535 (538)
                      +||++.|+|+++...  ....+||+|....              ..+|.++++|
T Consensus        74 ~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          74 MVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             ceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            999999999999754  3456899995321              4667777665

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.6e-17  Score=143.36  Aligned_cols=118  Identities=19%  Similarity=0.353  Sum_probs=97.4

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC------
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------  446 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~------  446 (538)
                      ....|+|++++.|.                           .|.|.|+|++|+||+..   +.+||||++++..      
T Consensus         3 ~p~~G~l~lsl~y~---------------------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~   55 (142)
T d1rh8a_           3 HPITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVM   55 (142)
T ss_dssp             CCCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCE
T ss_pred             CCcceEEEEEEEEe---------------------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCccccc
Confidence            34689999999995                           46899999999999764   5789999999832      


Q ss_pred             --------eEEEeeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceec
Q 009307          447 --------EERKTKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRIN  516 (538)
Q Consensus       447 --------~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~  516 (538)
                              .+++|++++++.||.|||.|.|.....  .....|.++|||++.    ++++++||++.|+|+++.......
T Consensus        56 ~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~----~~~~~~lG~~~i~L~~l~~~~~~~  131 (142)
T d1rh8a_          56 VVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHLDNTP  131 (142)
T ss_dssp             ECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGGTTCC
T ss_pred             ccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecC----CCCCeeeEEEEEEhHHcCCCCCce
Confidence                    124799999999999999999975332  123579999999975    678899999999999998877788


Q ss_pred             eEEEeCCC
Q 009307          517 EKYHLIDS  524 (538)
Q Consensus       517 ~~~~L~~~  524 (538)
                      +||+|.+.
T Consensus       132 ~W~~L~~~  139 (142)
T d1rh8a_         132 RWYPLKEQ  139 (142)
T ss_dssp             EEEECBCC
T ss_pred             EEEECcCc
Confidence            99999864

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.6e-16  Score=136.24  Aligned_cols=102  Identities=20%  Similarity=0.324  Sum_probs=83.9

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEE--CC---eEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF--RG---EERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~--~~---~~~k  450 (538)
                      +|+|.++++|.|                         ..+.|.|+|++|+||+..   +.+||||++++  ++   .+++
T Consensus         1 rG~l~~sl~Y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~k   55 (138)
T d1w15a_           1 RGELLVSLCYQS-------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKK   55 (138)
T ss_dssp             CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEEcC-------------------------CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCcccc
Confidence            599999999996                         367899999999999863   57899999998  22   2458


Q ss_pred             eeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEcccCccCCCCCceeEEEEEechhh
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGLLHPKETLGYIDINLSDV  509 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~~~-~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l  509 (538)
                      |++++++.||.|||.|.|.+....... .|.|+|||++.    ++++++||++.++++..
T Consensus        56 T~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          56 THVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTCC
T ss_pred             ceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC----CCCCCEEEEEEEcchhC
Confidence            999999999999999999986543333 69999999875    67899999999999753

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.4e-17  Score=139.69  Aligned_cols=120  Identities=20%  Similarity=0.408  Sum_probs=95.4

Q ss_pred             ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEE
Q 009307          379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERK  450 (538)
Q Consensus       379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~k  450 (538)
                      +|+|.++++|.|                         ..+.|.|+|++|+||+..   +.+||||++++.     ..+++
T Consensus         1 rG~l~l~l~Y~~-------------------------~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~k   55 (137)
T d2cm5a1           1 RGKILVSLMYST-------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK   55 (137)
T ss_dssp             CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEE
T ss_pred             CcEEEEEEEEEC-------------------------CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeec
Confidence            599999999986                         377999999999999753   578999999983     23569


Q ss_pred             eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307          451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI  529 (538)
Q Consensus       451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I  529 (538)
                      |++++++.||.|||.|.|.+..... ...|.|+||+++.    ++++++||++.++++++..  ...+||+|.+.+...+
T Consensus        56 T~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~----~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~~~~~v  129 (137)
T d2cm5a1          56 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAKGE--RLKHWYECLKNKDKKI  129 (137)
T ss_dssp             CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHH--HHHHHHHHHHCTTCCE
T ss_pred             CEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC----CCCCCEEEEEEeCccccCc--chhhhhhHhhCCCCee
Confidence            9999999999999999999865322 3479999999875    6789999999999987543  2346776665544444

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=134.64  Aligned_cols=109  Identities=20%  Similarity=0.397  Sum_probs=85.1

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEE-eeCC--CCCEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELA  329 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~  329 (538)
                      +....+.|.|+|++|+||+..+..+.+||||++++.+.  ....++|++++++.||.|||+|.|. +...  ....|.|+
T Consensus         9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~   88 (125)
T d2bwqa1           9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   88 (125)
T ss_dssp             EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred             EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence            34556899999999999999988899999999999543  3345789999999999999999996 4322  25689999


Q ss_pred             EEeccCCC--CCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          330 VYDWEQVG--KHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       330 v~d~~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      |||++..+  ++++||++.++|+++...+. ..|++|
T Consensus        89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L  124 (125)
T d2bwqa1          89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKL  124 (125)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred             EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence            99999753  45699999999999876543 457765

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4e-16  Score=132.49  Aligned_cols=113  Identities=20%  Similarity=0.354  Sum_probs=91.8

Q ss_pred             CceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307          416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL  492 (538)
Q Consensus       416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~  492 (538)
                      ..+.|.|+|++|++++..   +.+||||++.++++.++|++++++.||.|||.|+|.+..   .+.|.|+|||++.    
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~----   76 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT----   76 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccC----
Confidence            357899999999999763   468999999999999999999999999999999999865   3689999999986    


Q ss_pred             CCCCceeEEEEEechhhccc--c-e--eceEEEeCCC-----CCcEEEEEEEE
Q 009307          493 LHPKETLGYIDINLSDVVSN--K-R--INEKYHLIDS-----KNGRIQIELQW  535 (538)
Q Consensus       493 ~~~d~~lG~~~i~l~~l~~~--~-~--~~~~~~L~~~-----~~G~I~l~~~w  535 (538)
                      +++|++||++.++|.++...  . .  ...++.+.+.     ..|+|.+.++.
T Consensus        77 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1          77 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             CCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            67899999999999998653  1 2  2234444332     24888887764

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.9e-16  Score=132.15  Aligned_cols=115  Identities=27%  Similarity=0.466  Sum_probs=88.8

Q ss_pred             cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEEe
Q 009307          380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERKT  451 (538)
Q Consensus       380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT  451 (538)
                      |+|++++.|.|                         ..+.|.|+|++|+||+..   +.+||||++++.     ...++|
T Consensus         1 G~l~l~l~y~~-------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT   55 (125)
T d2bwqa1           1 GQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT   55 (125)
T ss_dssp             CEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEEC
T ss_pred             CEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCcccccc
Confidence            89999999985                         367899999999999763   578999999982     245799


Q ss_pred             eeecCCCCCcccceEEEEe-cCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307          452 KHVKKNRDPRWEEEFQFML-EEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI  522 (538)
Q Consensus       452 ~v~~~t~nP~w~e~f~f~v-~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  522 (538)
                      ++++++.||.|||.|.|.. .... ....|.|+|||.+...  .+++++||++.++|+++..... .+||+|+
T Consensus        56 ~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~--~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR--EEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             CCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC---------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCC--CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            9999999999999999964 3221 1347999999987520  1345699999999999876554 5799984

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-15  Score=130.89  Aligned_cols=120  Identities=21%  Similarity=0.333  Sum_probs=94.9

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEE---CCeE
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILF---RGEE  448 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~---~~~~  448 (538)
                      +...|+|.+++.|.+.                         .+.|.|+|++|+||+..    +.+||||++++   +...
T Consensus         5 ~~~~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~   59 (138)
T d1ugka_           5 SSGLGTLFFSLEYNFE-------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHK   59 (138)
T ss_dssp             CCCCCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSE
T ss_pred             CCCCEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEe
Confidence            4568999999999863                         56899999999999863    24799999999   3456


Q ss_pred             EEeeeecCCCCCcccceEEEEecCCCC--CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc-cceeceEEEeCCC
Q 009307          449 RKTKHVKKNRDPRWEEEFQFMLEEPPT--NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS-NKRINEKYHLIDS  524 (538)
Q Consensus       449 ~kT~v~~~t~nP~w~e~f~f~v~~~~~--~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~  524 (538)
                      ++|++++++.||.|||.|.|.......  ...|.|+|||.+.    ++++++||++.++|+++.. ......|+.+...
T Consensus        60 ~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~  134 (138)
T d1ugka_          60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC----CCCCcEEEEEEEEcccccCCCCeEEEEeeccCC
Confidence            799999999999999999997432211  2379999999875    6789999999999999854 3344556665443

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.1e-16  Score=134.35  Aligned_cols=98  Identities=32%  Similarity=0.426  Sum_probs=77.8

Q ss_pred             CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEEE
Q 009307          256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY  331 (538)
Q Consensus       256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~  331 (538)
                      ....+.|.|+|++|+||+.++..+.+||||++++.+  ....+++|++++++.||.|||+|.|.+....  ...|.|+||
T Consensus        11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~   90 (138)
T d1w15a_          11 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL   90 (138)
T ss_dssp             ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred             cCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence            345678999999999999999889999999999843  2334468999999999999999999986433  457999999


Q ss_pred             eccCCCCCcccEEEEEeCccCC
Q 009307          332 DWEQVGKHDKMGMNVVPLKELT  353 (538)
Q Consensus       332 d~~~~~~d~~lG~~~i~l~~l~  353 (538)
                      |++.++++++||+|.+++....
T Consensus        91 d~~~~~~~~~iG~~~i~l~~~~  112 (138)
T d1w15a_          91 DSERGSRNEVIGRLVLGATAEG  112 (138)
T ss_dssp             ECCTTSCCEEEEEEEESTTCCS
T ss_pred             eCCCCCCCCEEEEEEEcchhCC
Confidence            9999999999999999997643

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.4e-16  Score=134.97  Aligned_cols=98  Identities=39%  Similarity=0.637  Sum_probs=84.5

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v  330 (538)
                      +....+.|.|+|++|+||+..+..+.+||||++++.+.  ....++|++++++.||+|||+|.|.+....  ...|.|+|
T Consensus        20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v   99 (157)
T d1uowa_          20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (157)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence            34456899999999999999888899999999998643  233458999999999999999999986543  56899999


Q ss_pred             EeccCCCCCcccEEEEEeCccC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKEL  352 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l  352 (538)
                      ||++.++++++||++.|++...
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         100 LDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             EECCSSSCCCEEEEEEEETTCC
T ss_pred             cccCCCCCCceeEEEEEecccC
Confidence            9999999999999999999764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=4.7e-16  Score=133.10  Aligned_cols=99  Identities=30%  Similarity=0.540  Sum_probs=84.9

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....|.|.|+|++|+||+..+..+.+||||++++.+.  ...+++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v   89 (137)
T d2cm5a1          10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV   89 (137)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence            34467899999999999999888899999999998542  34457899999999999999999998643  356899999


Q ss_pred             EeccCCCCCcccEEEEEeCccCC
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELT  353 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~  353 (538)
                      ||++..+++++||+|.+++..+.
T Consensus        90 ~~~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          90 WDYDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCH
T ss_pred             eeCCCCCCCCEEEEEEeCccccC
Confidence            99999999999999999998654

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.2e-15  Score=133.65  Aligned_cols=119  Identities=19%  Similarity=0.349  Sum_probs=96.8

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~  447 (538)
                      .+..|+|.++++|.|                         ..+.|.|+|++|+||+..   +.+||||++++..     .
T Consensus         8 ~~~~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~   62 (157)
T d1uowa_           8 LEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK   62 (157)
T ss_dssp             GGCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE
T ss_pred             ceeeeEEEEEEEEcC-------------------------CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcccc
Confidence            457899999999996                         367999999999999763   5799999999843     2


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhh----------cc--cce
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV----------VS--NKR  514 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l----------~~--~~~  514 (538)
                      .++|++++++.||+|||.|.|.+..... ...|.++|||++.    ++++++||++.|++...          ..  +..
T Consensus        63 ~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~  138 (157)
T d1uowa_          63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP  138 (157)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCC
T ss_pred             ceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC----CCCCceeEEEEEecccCChhHHHHHHHHhCCCCc
Confidence            3489999999999999999999875432 2479999999886    67899999999999653          32  235


Q ss_pred             eceEEEeCC
Q 009307          515 INEKYHLID  523 (538)
Q Consensus       515 ~~~~~~L~~  523 (538)
                      +.+||.|..
T Consensus       139 v~~Wh~L~~  147 (157)
T d1uowa_         139 IAQWHTLQV  147 (157)
T ss_dssp             EEEEEECBC
T ss_pred             eeEeEeCCC
Confidence            678999964

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.9e-15  Score=126.84  Aligned_cols=111  Identities=18%  Similarity=0.307  Sum_probs=88.7

Q ss_pred             eEEEEEEEeeecCCC-----CCCCCcEEEEEEC-----CeEEEeeeecCC-CCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307          418 GLLVVIVHEAQDVEG-----KHHTNPYARILFR-----GEERKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEVCSV  486 (538)
Q Consensus       418 g~L~v~v~~a~~L~~-----~~~~dpyv~v~~~-----~~~~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~~l~v~V~d~  486 (538)
                      ..|+|+|++|++|+.     .+.+||||++++.     ...++|++++++ .||.|||+|+|.+..+ ....|.++|||+
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~   82 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY   82 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence            579999999999964     2468999999994     356789988765 6999999999998764 446899999999


Q ss_pred             ccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEE
Q 009307          487 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR  536 (538)
Q Consensus       487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~  536 (538)
                      +.    ++.|++||++.++|+++..+   .+|++|.+..     .++|.++++++
T Consensus        83 d~----~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          83 DS----SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             CT----TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cC----CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            85    57789999999999998643   3689997653     35677777765

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.9e-15  Score=124.97  Aligned_cols=110  Identities=17%  Similarity=0.268  Sum_probs=86.1

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK  338 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  338 (538)
                      .+.|.++.+..++.  ..+.+||||++++.+..  ...++|+++++|+||+|||+|+|.+.+  .+.|.|.|||+|    
T Consensus         6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d----   77 (123)
T d1bdya_           6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA----   77 (123)
T ss_dssp             EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred             EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence            34455555555544  45889999999996532  123579999999999999999999975  478999999986    


Q ss_pred             CcccEEEEEeCccCC-----CCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307          339 HDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP  390 (538)
Q Consensus       339 d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p  390 (538)
                      |+++|.+.+++.++.     .+...+.|+++            ...|+|+++++|++
T Consensus        78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------~~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMCVQYFL  122 (123)
T ss_dssp             TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred             ccccCccEEehhheeeccccCCCcccEEEeC------------CCCEEEEEEEEEec
Confidence            689999999999885     34566788876            35799999999985

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=2e-16  Score=136.80  Aligned_cols=120  Identities=20%  Similarity=0.347  Sum_probs=94.9

Q ss_pred             CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----
Q 009307          376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----  447 (538)
Q Consensus       376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----  447 (538)
                      ....|+|+++++|.|                         ..|.|.|+|++|+||+..   +.+||||++++...     
T Consensus         3 ~~~~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~   57 (145)
T d1dqva2           3 KADLGELNFSLCYLP-------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK   57 (145)
T ss_dssp             CSCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTS
T ss_pred             cCcceEEEEEEEEcC-------------------------CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccce
Confidence            457899999999996                         378999999999999753   56899999999642     


Q ss_pred             EEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307          448 ERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK  525 (538)
Q Consensus       448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  525 (538)
                      +++|++++++.||.|||.|.|.+.... ....|.|+|+|++.    ++++++||++.|+++.+...+ ..+|++|...+
T Consensus        58 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~i~l~~~~~~~-~~~W~~l~~~p  131 (145)
T d1dqva2          58 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC----IGHNEVIGVCRVGPEAADPHG-REHWAEMLANP  131 (145)
T ss_dssp             CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS----SSCCEEEEECCCSSCTTCHHH-HHHHHTSSSSS
T ss_pred             eecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC----CCCCcEEEEEEECchHcCchh-hHHHHHHHhCC
Confidence            468999999999999999999876432 22479999999875    678899999999998764322 34566665443

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.6e-14  Score=118.18  Aligned_cols=105  Identities=10%  Similarity=0.244  Sum_probs=84.8

Q ss_pred             EEEEEEeeecCCC-CCCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307          420 LVVIVHEAQDVEG-KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL  493 (538)
Q Consensus       420 L~v~v~~a~~L~~-~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~  493 (538)
                      +.+.++.+..++. .+.+||||++++++.     .++|+++++|+||+|||+|+|.+.+.   +.+.|.|||++      
T Consensus         7 ~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~---~~l~i~V~d~d------   77 (123)
T d1bdya_           7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA------   77 (123)
T ss_dssp             EEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT---CEEEEEEEEET------
T ss_pred             EEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc---cEEEEEEEEcc------
Confidence            4445555555544 368999999999653     34788999999999999999999753   68999999875      


Q ss_pred             CCCceeEEEEEechhhcc-----cceeceEEEeCCCCCcEEEEEEEEEe
Q 009307          494 HPKETLGYIDINLSDVVS-----NKRINEKYHLIDSKNGRIQIELQWRT  537 (538)
Q Consensus       494 ~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~G~I~l~~~w~p  537 (538)
                        ++++|.+.+++.++..     +...+.|++|.  ++|+|+++++|.+
T Consensus        78 --d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 --EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             --TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             --ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence              5799999999999865     34567899996  6999999999975

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.1e-15  Score=132.02  Aligned_cols=109  Identities=34%  Similarity=0.570  Sum_probs=88.7

Q ss_pred             CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307          255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV  330 (538)
Q Consensus       255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  330 (538)
                      +....|.|.|+|++|+||+..+..+.+||||++++.+..  ...++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v   94 (145)
T d1dqva2          15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV   94 (145)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred             EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence            445678999999999999998888999999999997543  2346899999999999999999987632  356799999


Q ss_pred             EeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307          331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL  364 (538)
Q Consensus       331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  364 (538)
                      ||++..++|++||++.|++..+... ....|+++
T Consensus        95 ~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l  127 (145)
T d1dqva2          95 VDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEM  127 (145)
T ss_dssp             EECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTS
T ss_pred             EecCCCCCCcEEEEEEECchHcCch-hhHHHHHH
Confidence            9999999999999999999876432 22345444

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-12  Score=108.65  Aligned_cols=87  Identities=22%  Similarity=0.444  Sum_probs=66.6

Q ss_pred             EEEEEEEeecCCccCCCCCCCCcEEEEEEcCc---cCCeeeee--ecCCCCCCeEecE-EEE-EeeCCCCCEEEEEEEec
Q 009307          261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITED---KLPSKKTT--VKHKNLNPEWNEE-YNF-TVRDPESQAVELAVYDW  333 (538)
Q Consensus       261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~T~--v~~~t~nP~w~e~-f~f-~v~~~~~~~L~i~v~d~  333 (538)
                      +|.|+|++|++|+.+    +.||||++++-+.   ..++.+|+  +.+++.||.|||+ |.| .+..++...|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999864    4799999999531   12223333  3478999999976 444 35555566899999997


Q ss_pred             cCCCCCcccEEEEEeCccCCCC
Q 009307          334 EQVGKHDKMGMNVVPLKELTPE  355 (538)
Q Consensus       334 ~~~~~d~~lG~~~i~l~~l~~~  355 (538)
                      +    |++||++.+|++.+..+
T Consensus        78 d----~~~lG~~~ipl~~l~~G   95 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG   95 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE
T ss_pred             C----CCEEEEEEEEcccCcCC
Confidence            5    78999999999999776

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-10  Score=96.70  Aligned_cols=95  Identities=24%  Similarity=0.328  Sum_probs=70.7

Q ss_pred             EEEEEEEeeecCCCCCCCCcEEEEEECC------eEEEeee--ecCCCCCcccce-EEEE-ecCCCCCCeEEEEEEEccc
Q 009307          419 LLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTKH--VKKNRDPRWEEE-FQFM-LEEPPTNDRLHVEVCSVSS  488 (538)
Q Consensus       419 ~L~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~v--~~~t~nP~w~e~-f~f~-v~~~~~~~~l~v~V~d~~~  488 (538)
                      .|.|+|++|++|+.. ..||||++++-|      ++.+|++  ..++.||.|||. |.|. +..+ ....|.+.|||++ 
T Consensus         2 tl~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-~l~~L~f~V~D~d-   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVMEEG-   78 (122)
T ss_dssp             EEEEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEETT-
T ss_pred             EEEEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC-cccEEEEEEECCC-
Confidence            488999999999864 689999999943      2344444  356899999976 5443 4432 3358999999974 


Q ss_pred             CccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307          489 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN  526 (538)
Q Consensus       489 ~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~  526 (538)
                             +++||++.++|+.+..+-   ++.+|.+..+
T Consensus        79 -------~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g  106 (122)
T d2zkmx2          79 -------NKFLGHRIIPINALNSGY---HHLCLHSESN  106 (122)
T ss_dssp             -------TEEEEEEEEEGGGBCCEE---EEEEEECTTC
T ss_pred             -------CCEEEEEEEEcccCcCCc---eEEEccCCCc
Confidence                   589999999999886543   6788877643