Citrus Sinensis ID: 009331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
Protein Sequence
MEPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEIKLYAV
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHccHHHHHHHHccccccccHHcccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccHEEEEEEHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccEEEEc
Coil and Loop (DISEMBL)
MEPPSEQQQSWKKMKKQLtakrddtplqslvrTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSlagikarngydAFHIAAKQGCLEVLKILMEALPELLmtfdssnttalhtaSSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLskepgivlrndkkgqTALHMAVKGQSIELVDELVKVEPVIINMVdakgnsalhiATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKehgvpcgksikpqaNSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAifsvpgqfadkpdelppkvspgeahiapktpfLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRrssmdsgsrsmsasvmldseflnneiklyav
Flexible Loop (DISEMBL)
MEPPSEQQQSWKKMKKQltakrddtplqslvrtgsveLVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLningvdkaviNKSRetaldtaektghsEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHdqlehtretrkhvHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEAskirsirrssmdsgsrsmsasvmldseflnneiklyav
Low Complexity Region (SEG)
MEPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSttvvavliatvafaaifSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAvvivqtsvvvIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEaskirsirrssmdsgsrsmsasVMLDSEFLNNEIKLYAV
Disordered region (IsUnstruct)
******************************VRTGSVELVLDMISSYGDMELR*********GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKS*************SEIGVILKEHGVPC**************************************VHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQF*****************IAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEAS*************************************
Disordered Region (DISOPRED)
**PPSEQ*********QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHD***********************TEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEAS*****************************NEIKLYAV
Disordered Region (DISEMBL)
*********************RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ*********AVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIR***************ASVMLDSEFLNNEIKLYAV
Disordered Region (DISPRO)
*EPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIR***********************FLNNEIKLYA*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEIKLYAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	537	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.953	0.977	0.619	0.0
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.942	0.857	0.444	1e-111
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.884	0.892	0.430	1e-104
Q6ZVH7	1005	Espin-like protein OS=Hom	yes	no	0.471	0.251	0.286	2e-20
Q9EQG6	1762	Kinase D-interacting subs	yes	no	0.443	0.135	0.313	5e-20
Q3UYR4	1005	Espin-like protein OS=Mus	yes	no	0.500	0.267	0.277	6e-20
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.467	0.134	0.309	1e-19
Q9ET47	871	Espin OS=Mus musculus GN=	no	no	0.482	0.297	0.287	4e-19
Q9ULH0	1771	Kinase D-interacting subs	no	no	0.439	0.133	0.307	7e-19
Q7T163	1672	Kinase D-interacting subs	no	no	0.402	0.129	0.349	1e-18

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/533 (61%), Positives = 409/533 (76%), Gaps = 21/533 (3%)

Query: 12  KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
           K M KQ+TA+RDDTPL + VR G  +L+L+MI  +  +EL+E+L++ NQSGETALYVAAE
Sbjct: 6   KTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAE 65

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
           YGY DMV+ ++++ D+ LAG KA+NG+DAFHIAAK G L+VL +L+EA PEL  TFDSS 
Sbjct: 66  YGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSK 125

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
           TTALHTA+SQGH E+V FLL+KG  LA IARSNGKTALHSAARNGH  IVK L+ K+ G+
Sbjct: 126 TTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGM 185

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
           V R DKKGQTALHMAVKGQ+ E+VD L++ +  +IN  D KGN+ LHIA RK R +IVQ 
Sbjct: 186 VTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQT 245

Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ-----ANSARE 306
           +L    V +  +NKS ETALD AEKTG  EI  +L++ G+   +SIKP      + S+R+
Sbjct: 246 VLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRK 305

Query: 307 LKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAF 366
           LK+ VS+I HEVH QLE T  TR+ + GIAKR+NKMHTEGLNNAINSTT+VA+LIATVAF
Sbjct: 306 LKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAF 365

Query: 367 AAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVV 426
           AAIF+VPGQ+ D P ++PP  S GEA  AP+  FLIF++FDS ALFISLAVV+VQTSVVV
Sbjct: 366 AAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVV 425

Query: 427 IERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIG 486
           IER+AKKQMMA+INKLMW+ACIMISVAF++LS++VVG+  +  AV VT IG +IMVST+G
Sbjct: 426 IERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLG 485

Query: 487 TMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNE--IKLYAV 537
           TM YWVI NRIE              GS+S  AS+M D E  +++   KLYAV
Sbjct: 486 TMCYWVIANRIE--------------GSKSSPASMMSDPELADSKHNRKLYAV 524

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/545 (44%), Positives = 336/545 (61%), Gaps = 39/545 (7%)

Query: 8   QQSWKKMKKQLTAKRDDTPLQSLVRTG---SVELVLDMISSY---------GDMELREM- 54
           Q   KK  KQ+T + +DT L    + G   +V+ +L  I+S           D E+ E+ 
Sbjct: 59  QAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIR 118

Query: 55  ---LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE 111
              ++++N+ GETAL+ AA+ G++D+V+E+++Y        K R+GYD  HIAA QG   
Sbjct: 119 ASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHA 178

Query: 112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           ++++L++    L  TF  SN T L +A+ +GH EVV  LL K   L  I+RSN K ALH 
Sbjct: 179 IVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHL 238

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AAR GH+E++KALLSK+P +  R DKKGQTALHMAVKGQS E+V  L+  +P I+   D 
Sbjct: 239 AARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDK 298

Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
             N+ALH+ATRK R +IV+ LL++   +   + +  +TALD AE    SE    +KE   
Sbjct: 299 SCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLA 358

Query: 292 PCGKSIKPQANSAR-ELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNA 350
             G     + N  R EL+  V+ IK++VH QLE T+ T K+VH I+K + K+H EG+NNA
Sbjct: 359 RSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNA 418

Query: 351 INSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIA 410
            NS TVVAVL ATVAFAAIF+VPG   D  D        G A +  +  F IF IF+++A
Sbjct: 419 TNSVTVVAVLFATVAFAAIFTVPG--GDNND--------GSAVVVGRASFKIFFIFNALA 468

Query: 411 LFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWA 470
           LF SLAVV+VQ ++V  E KA+K+++ VINKLMWLA +  SVAFLA SYIVVG      A
Sbjct: 469 LFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAA 528

Query: 471 VAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIR---RSSMDSGSRSMSASVMLDSEF 527
             VT +G VIM   +GTM+Y+V    +++ + RS+R   +S+  SGS S        S+F
Sbjct: 529 ELVTVVGGVIMAGVLGTMTYYV----VKSKRTRSMRKKVKSARRSGSNSWH-----HSDF 579

Query: 528 LNNEI 532
            N+E+
Sbjct: 580 SNSEV 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/492 (43%), Positives = 312/492 (63%), Gaps = 17/492 (3%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
           D + LQ LV   + + ++D  S      + E++S  N +GETA+Y++A     D+ R +I
Sbjct: 22  DLSQLQQLVDNLTGDELIDESSPCS--AVAELMSVQNDAGETAVYISAAENLEDIFRYLI 79

Query: 83  RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
           R+       I++++  +AFH+AAK+G L ++K L+   PEL    D+SNT+ L+ A+ Q 
Sbjct: 80  RFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQD 139

Query: 143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
           H+E+V  +L+   + A I R NGKT+LH+A R G L IVKAL+ K+  IV   DKKGQTA
Sbjct: 140 HLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTA 199

Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV 262
           LHMAVKG+S+E+V+E+++ +  I+N  D KGN+ALHIATRK R QI   LL    ++   
Sbjct: 200 LHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNA 259

Query: 263 INKSRETALDTAEKTGHS----EIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEV 318
           IN  +ETA+D A+K  +S    EI   L E G   G+ I  + + AR LK+AVSDIKHEV
Sbjct: 260 INNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRE-DEARALKRAVSDIKHEV 318

Query: 319 HDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFAD 378
             QL    +T + V GIAK + K+H E + N  NS TVVAVL A++AF AIF++PGQ+  
Sbjct: 319 QSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFT 378

Query: 379 KPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAV 438
           +   +      G+A+IA +T F +F + ++ +LFISLAVV+VQ ++V  + +A+K++++V
Sbjct: 379 EGSHV------GQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSV 432

Query: 439 INKLMWLACIMISVAFLALSYIVVGDDGRGW-AVAVTFIGTVIMVSTIGTMSYWVIVNRI 497
           +NKLMW AC     AFLA+++ VVG  G  W A+ +T +G  I+V T+ +M Y+V   R 
Sbjct: 433 VNKLMWAACACTFGAFLAIAFAVVG-KGNSWMAITITLLGAPILVGTLASMCYFVFRQRF 491

Query: 498 EASK--IRSIRR 507
            +     R IRR
Sbjct: 492 RSGNDSQRRIRR 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZVH7|ESPNL_HUMAN Espin-like protein OS=Homo sapiens GN=ESPNL PE=2 SV=3

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 12/265 (4%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TP      TGS+  +  ++   G       L   + SG + L++AA +G+  +V  ++  
Sbjct: 72  TPAHDAAATGSLAELCWLVREGGCG-----LQDQDASGVSPLHLAARFGHPVLVEWLL-- 124

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
           H+   A ++ R G    H AA  G L  LK+L  A    +     S  + L+ A  +GH+
Sbjct: 125 HEGHSATLETREGARPLHHAAVSGDLTCLKLLTAAHGSSVNRRTRSGASPLYLACQEGHL 184

Query: 145 EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS-KEPGIVLRNDKKGQTAL 203
            + +FL++       +   +G +ALH+AA  GH  +V  L++  + G+  R D +G TAL
Sbjct: 185 HLAQFLVKDCGADVHLRALDGMSALHAAAARGHYSLVVWLVTFTDIGLTAR-DNEGATAL 243

Query: 204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVI 263
           H A +G    ++D L+ +   I+   D+ G + LH A   G+++  Q L++ + VD ++ 
Sbjct: 244 HFAARGGHTPILDRLLLMGTPILR--DSWGGTPLHDAAENGQMECCQTLVSHH-VDPSLR 300

Query: 264 NKSRETALDTAEKTGHSEIGVILKE 288
           ++   TA D AE  GH +    L+E
Sbjct: 301 DEDGYTAADLAEYHGHRDCAQYLRE 325

Homo sapiens (taxid: 9606)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 144/265 (54%), Gaps = 27/265 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G+VE+V +++ +  +  L ++         TAL  A++ G++ +V E+++ 
Sbjct: 40  TPLMLAAEQGNVEIVKELLKNGANCNLEDL------DNWTALISASKEGHIHIVEELLK- 92

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
              S A ++ R+  G+ A   A  +G  +V+++L+   A P +   +   +   +  A+ 
Sbjct: 93  ---SGASLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGLY---SVYPIIWAAG 146

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG- 199
           +GH ++V  LL+ G+ +   +   G T L  AAR GHLE VK LL+    +    D++G 
Sbjct: 147 RGHADIVHLLLQNGAKV-NCSDKYGTTPLVWAARKGHLECVKHLLAMGADV----DQEGA 201

Query: 200 --QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
              TAL +AVKG   + V E++K  P  +N+ D  GN+AL IA+++G ++IVQ LL+  G
Sbjct: 202 NSMTALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKEGHIEIVQDLLDA-G 259

Query: 258 VDKAVINKSRETALDTAEKTGHSEI 282
               + ++S +T L  A + GH EI
Sbjct: 260 TYVNIPDRSGDTVLIGAVRGGHVEI 284

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q3UYR4|ESPNL_MOUSE Espin-like protein OS=Mus musculus GN=Espnl PE=2 SV=1

 Score = 99.4 bits (246), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 12/281 (4%)

Query: 13  KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY 72
           K+     A    TP+     TG++  +  ++   G       L   + SG + L++AA +
Sbjct: 60  KLPGNQQAHNGATPVHDAAATGNLAELCWLVRDAGCG-----LQDQDASGVSPLHLAARF 114

Query: 73  GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT 132
           G+  +V  ++R  +   A ++   G    H AA  G L  LK+L  A    +     S  
Sbjct: 115 GHPALVEWLLR--EGHAATLETLEGALPLHHAAVSGDLTCLKLLTAAHSSGVNQRTCSGA 172

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS-KEPGI 191
           + L+ A  +GH+ + +FL++       +   +G ++LH+AA +GH  +V  L++  + G+
Sbjct: 173 SPLYLACQEGHLHLAQFLVKDCGADVRLRALDGMSSLHAAAAHGHYSLVVWLVTFTDIGL 232

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
             R D +G TALH A +G    ++D L+ +   I  M D+ G + LH A   G ++  Q 
Sbjct: 233 TAR-DNEGATALHFAARGGHTPILDRLLLMGAPI--MRDSWGGTPLHDAAENGHMECCQT 289

Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292
           LL+ + VD  + ++   TA+D AE  GH +    L+E   P
Sbjct: 290 LLSHH-VDPFLRDEDGYTAIDLAEYHGHQDCAQFLREMSRP 329

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 131/268 (48%), Gaps = 17/268 (6%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL +  R G V+  L +      +E     + M + G T L+VAA+YG V +  E++  
Sbjct: 501 TPLHTAAREGHVDTALAL------LEKEASQACMTKKGFTPLHVAAKYGKVRLA-ELLLE 553

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSS--NTTALHTASSQG 142
           HD        +NG    H+A     L+++K+L   LP        +    T LH A+ Q 
Sbjct: 554 HDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLL---LPRGGSPHSPAWNGYTPLHIAAKQN 609

Query: 143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
            +EV + LL+ G + A      G T LH AA+ GH E+V  LLSK+    L N K G T 
Sbjct: 610 QIEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGN-KSGLTP 667

Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV 262
           LH+  +   + + D L+K   V ++     G + LH+A+  G +++V+ LL  +  D   
Sbjct: 668 LHLVSQEGHVPVADVLIK-HGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNA 725

Query: 263 INKSRETALDTAEKTGHSEIGVILKEHG 290
             K   + L  A + GH++I  +L ++G
Sbjct: 726 KTKLGYSPLHQAAQQGHTDIVTLLLKNG 753

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 9/268 (3%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A+   TP      TG +   L  + + G   ++E     + SG T L++AA +G+ D+V+
Sbjct: 67  ARNGATPAHDAAATGYLS-CLQWLLTQGGCRVQEK----DNSGATVLHLAARFGHPDVVK 121

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
            ++ Y   + + I    G    H AA +G L  LK+L+   PE +    ++  T L+ A 
Sbjct: 122 WLL-YQGGANSAITTDTGALPIHYAAAKGDLPSLKLLVGHYPEGVNAQTNNGATPLYLAC 180

Query: 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199
            +GH+EV K+L+++ S    +   +G T LH+AA+ GH  ++  L+S         D  G
Sbjct: 181 QEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSFADVSFSEQDHDG 240

Query: 200 QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259
            TA+H A      +++  L+     I    D  G + LH A   G ++  Q +L +NG  
Sbjct: 241 ATAMHFAASRGHTKVLSWLLLHGAEISQ--DLWGGTPLHDAAENGELECCQ-ILAVNGAG 297

Query: 260 KAVINKSRETALDTAEKTGHSEIGVILK 287
             V +    TA D AE  GH+     L+
Sbjct: 298 LDVRDHDGYTAADLAEFNGHTHCSRYLR 325

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Mus musculus (taxid: 10090)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score = 95.9 bits (237), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 140/267 (52%), Gaps = 31/267 (11%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G++E+V ++I +  +  L ++         TAL  A++ G+V +V E+++ 
Sbjct: 40  TPLMIAAEQGNLEIVKELIKNGANCNLEDL------DNWTALISASKEGHVHIVEELLK- 92

Query: 85  HDTSLAGI----KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTA 138
                 G+    +   G+ A   A  +G  +V+++L+   A P +   +   +   +  A
Sbjct: 93  -----CGVNLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGLY---SVYPIIWA 144

Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
           + +GH ++V  LL+ G+ +   +   G T L  AAR GHLE VK LL+    +    D++
Sbjct: 145 AGRGHADIVHLLLQNGAKV-NCSDKYGTTPLVWAARKGHLECVKHLLAMGADV----DQE 199

Query: 199 G---QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
           G    TAL +AVKG   + V E++K  P  +N+ D  GN+AL IA+++G  +IVQ LL+ 
Sbjct: 200 GANSMTALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKEGHTEIVQDLLDA 258

Query: 256 NGVDKAVINKSRETALDTAEKTGHSEI 282
            G    + ++S +T L  A + GH EI
Sbjct: 259 -GTYVNIPDRSGDTVLIGAVRGGHVEI 284

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 129/255 (50%), Gaps = 39/255 (15%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYH-DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEA 119
           +G+T L +A+E G +++V+E+IR   + +L  +     + A   AAK+G +EV+K L+E 
Sbjct: 37  NGQTPLMLASEQGSLEIVQELIRRGANVNLDDVDC---WSALISAAKEGHVEVVKELLEN 93

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE 179
               +   D    TAL  AS +G VEV   LLE G+   T  +      +  AA  GH E
Sbjct: 94  -SAYIEHRDMGGWTALTWASYKGRVEVATVLLENGANPNTTGQQYSVYPIIWAAGRGHAE 152

Query: 180 IVKALL--------SKEPGI-----------------VLRN----DKKG---QTALHMAV 207
           IVK LL        S + G                  +L N    D++G    TAL +AV
Sbjct: 153 IVKLLLEHGAKVNCSDKYGTTPLIWAARKGHYDCVMHLLENGADVDQEGANSMTALIVAV 212

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR 267
           KG   E+V EL+K  P  +NM D  GN+AL IA ++G  +IVQ LL+  G    + ++S 
Sbjct: 213 KGGYTEVVKELLKRNPN-VNMTDKDGNTALMIAAKEGYTEIVQDLLDA-GTYVNIPDRSG 270

Query: 268 ETALDTAEKTGHSEI 282
           +T L  A + GH EI
Sbjct: 271 DTVLIGAVRGGHVEI 285

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
225439832	541	PREDICTED: ankyrin repeat-containing pro	1.0	0.992	0.724	0.0
147866067	539	hypothetical protein VITISV_005610 [Viti	0.996	0.992	0.717	0.0
356541266	549	PREDICTED: ankyrin repeat-containing pro	1.0	0.978	0.692	0.0
356542601	548	PREDICTED: ankyrin repeat-containing pro	1.0	0.979	0.687	0.0
356547216	560	PREDICTED: ankyrin repeat-containing pro	0.994	0.953	0.679	0.0
359478657	542	PREDICTED: ankyrin repeat-containing pro	0.996	0.987	0.705	0.0
449460983	547	PREDICTED: ankyrin repeat-containing pro	0.996	0.978	0.674	0.0
255568070	537	ankyrin repeat-containing protein, putat	0.992	0.992	0.683	0.0
356557461	603	PREDICTED: ankyrin repeat-containing pro	1.0	0.890	0.678	0.0
224088591	491	predicted protein [Populus trichocarpa]	0.908	0.993	0.723	0.0

>gi|225439832|ref|XP_002277467.1| PREDICTED: ankyrin repeat-containing protein At5g02620 [Vitis vinifera] gi|297741527|emb|CBI32659.3| unnamed protein product [Vitis vinifera]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/541 (72%), Positives = 452/541 (83%), Gaps = 4/541 (0%)

Query: 1   MEPPSEQQQSWKK-MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDME-LREMLSKM 58
           ME P+ QQ   +K + KQLT KRDDT L S  R G++EL LD++S   D E L+E+LSK 
Sbjct: 1   MEAPARQQSFRRKNITKQLTGKRDDTSLHSAARAGNLELALDILSKCEDAEALKELLSKQ 60

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           NQSGETALYVAAEYG+ D+V+EM+ Y+D S AGI+ARNGYDAFHIAAKQG LEVLK+LME
Sbjct: 61  NQSGETALYVAAEYGHCDLVKEMMEYYDVSSAGIQARNGYDAFHIAAKQGDLEVLKVLME 120

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
           A+PE  MT D SNTTALHTA++QGH+ VV FLLEKGS+LA IA+SNGKTALHSAAR GHL
Sbjct: 121 AIPETSMTVDLSNTTALHTAAAQGHISVVSFLLEKGSSLANIAKSNGKTALHSAARKGHL 180

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
           ++VKALLSKEPGI  R DKKGQTALHMAVKGQ+IE+VDEL+K +P +INMVDAK N+ LH
Sbjct: 181 KVVKALLSKEPGISTRTDKKGQTALHMAVKGQNIEVVDELMKSDPSLINMVDAKDNTTLH 240

Query: 239 IATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI- 297
           +A RK R QIVQ+LL+    D   INKS ETALDTAEKTGH+EI  IL+EHGV   KSI 
Sbjct: 241 VAVRKCRAQIVQQLLSHKATDTEAINKSGETALDTAEKTGHAEITTILQEHGVKSAKSIM 300

Query: 298 KPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVV 357
            P  N ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH+EGLNNAINSTTVV
Sbjct: 301 PPTKNKARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHSEGLNNAINSTTVV 360

Query: 358 AVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAV 417
           AVLIATVAFAAIF+VPGQ+AD P+ +PP +SPGEA+IAP+TPF++F IFDS+ALFISLAV
Sbjct: 361 AVLIATVAFAAIFNVPGQYADDPEHVPPGLSPGEANIAPRTPFMLFFIFDSLALFISLAV 420

Query: 418 VIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIG 477
           V+VQTS+VVIERKAKK+MMA+INKLMWLAC+++SVAFL+LSYIVVG   R  AV VT IG
Sbjct: 421 VVVQTSIVVIERKAKKKMMAIINKLMWLACVLVSVAFLSLSYIVVGTKERWLAVGVTGIG 480

Query: 478 TVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI-KLYA 536
           TVIM +T+GTM YWVIV+RIEA K RSIRRS+M S SRS   SVM DSE LNNE  KLYA
Sbjct: 481 TVIMATTLGTMCYWVIVHRIEAKKSRSIRRSTMSSRSRSSPMSVMSDSEILNNEYKKLYA 540

Query: 537 V 537
           +
Sbjct: 541 I 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866067|emb|CAN80966.1| hypothetical protein VITISV_005610 [Vitis vinifera]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/541 (71%), Positives = 450/541 (83%), Gaps = 6/541 (1%)

Query: 1   MEPPSEQQQSWKK-MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDME-LREMLSKM 58
           ME P+ QQ   +K + KQLT KRDDT L S  R G++EL LD++S   D E L+E+LSK 
Sbjct: 1   MEAPARQQSFRRKNITKQLTGKRDDTSLHSAARAGNLELALDILSKCEDAEALKELLSKQ 60

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           NQSGETALYVAAEYG+ D+V+EM+ Y+D S AGI+ARNGYDAFHIAAKQG  +++K+LME
Sbjct: 61  NQSGETALYVAAEYGHCDLVKEMMEYYDVSSAGIQARNGYDAFHIAAKQG--DLVKVLME 118

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
           A+PE  MT D SNTTALHTA++QGH+ VV FLLEKGS+LA IA+SNGKTALHSAAR GHL
Sbjct: 119 AIPETSMTVDLSNTTALHTAAAQGHISVVSFLLEKGSSLANIAKSNGKTALHSAARKGHL 178

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
            +VKALLSKEPGI  R DKKGQTALHMAVKGQ+IE+VDEL+K +P +INMVDAK N+ LH
Sbjct: 179 XVVKALLSKEPGISTRTDKKGQTALHMAVKGQNIEVVDELMKSDPSLINMVDAKDNTTLH 238

Query: 239 IATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI- 297
           +A RK R QIVQ+LL+    D   INKS ETALDTAEKTGH+EI  IL+EHGV   KSI 
Sbjct: 239 VAVRKCRAQIVQQLLSHKATDTEAINKSGETALDTAEKTGHAEITTILQEHGVKSAKSIM 298

Query: 298 KPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVV 357
            P  N ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH+EGLNNAINSTTVV
Sbjct: 299 PPTKNKARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHSEGLNNAINSTTVV 358

Query: 358 AVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAV 417
           AVLIATVAFAAIF+VPGQ+AD P+ +PP +SPGEA+IAP+TPF++F IFDS+ALFISLAV
Sbjct: 359 AVLIATVAFAAIFNVPGQYADDPEHVPPGLSPGEANIAPRTPFMLFFIFDSLALFISLAV 418

Query: 418 VIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIG 477
           V+VQTS+VVIERKAKK+MMA+INKLMWLAC+++SVAFL+LSYIVVG   R  AV VT IG
Sbjct: 419 VVVQTSIVVIERKAKKKMMAIINKLMWLACVLVSVAFLSLSYIVVGTKERWLAVGVTGIG 478

Query: 478 TVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI-KLYA 536
           TVIM +T+GTM YWVIV+RIEA K RSIRRS+M S SRS   SVM DSE LNNE  KLYA
Sbjct: 479 TVIMATTLGTMCYWVIVHRIEAKKSRSIRRSTMSSRSRSSPMSVMSDSEILNNEYKKLYA 538

Query: 537 V 537
           +
Sbjct: 539 I 539

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541266|ref|XP_003539100.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/549 (69%), Positives = 443/549 (80%), Gaps = 12/549 (2%)

Query: 1   MEPPSEQQQSW---------KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMEL 51
           M+ P+ Q Q+          KKM KQLT KRDDTPL S  R G++ ++ D +S   + EL
Sbjct: 1   MDTPNAQPQAASASTPRTPRKKMTKQLTGKRDDTPLHSAARAGNMSVLKDTVSGSEEGEL 60

Query: 52  REMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE 111
           R +L+K N SGET L+VAAEYGYV+MVRE+I+Y+D + AGIKA NG+DA HIAAKQG L+
Sbjct: 61  RVLLTKQNHSGETILFVAAEYGYVEMVRELIQYYDPAGAGIKASNGFDALHIAAKQGDLD 120

Query: 112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           ++KILMEA PEL MT D SNTTA+HTA+ QGH E+VK LLE GS LATIARSNGKTALHS
Sbjct: 121 IVKILMEAHPELSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATIARSNGKTALHS 180

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AARNGHLE+VKALL KEP +  R DKKGQTALHMAVKGQS+E+V+EL+K +P  INMVD 
Sbjct: 181 AARNGHLEVVKALLGKEPVVATRTDKKGQTALHMAVKGQSLEVVEELIKADPSTINMVDN 240

Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
           KGN+ALHIATRKGR QI++ LL     +  V+NKS ETALDTAEKTG+SEI  IL EHGV
Sbjct: 241 KGNTALHIATRKGRAQIIKLLLGQTETNGLVVNKSGETALDTAEKTGNSEIKDILLEHGV 300

Query: 292 PCGKSIK--PQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNN 349
              K+IK  P   +ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKRINKMH EGLNN
Sbjct: 301 RSAKAIKAQPGTATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHAEGLNN 360

Query: 350 AINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSI 409
           AINSTTVVAVLIATVAFAAIF+VPGQFAD P  LP  ++ GEA+IAP+  FLIF +FDSI
Sbjct: 361 AINSTTVVAVLIATVAFAAIFTVPGQFADDPKVLPAGMTIGEANIAPQAAFLIFFVFDSI 420

Query: 410 ALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGW 469
           ALFISLAVV+VQTSVV+IE KAKKQMMA+INKLMWLAC++ISVAFLALS++VVG D +  
Sbjct: 421 ALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWL 480

Query: 470 AVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLN 529
           A+ VT IGT IM +T+GTMSYWVI +RIEAS +RSIR+SSM+S SRS S SVM DSE LN
Sbjct: 481 AIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMESRSRSFSVSVMSDSELLN 540

Query: 530 NEIK-LYAV 537
           NE K LYA+
Sbjct: 541 NERKILYAI 549

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542601|ref|XP_003539755.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/548 (68%), Positives = 445/548 (81%), Gaps = 11/548 (2%)

Query: 1   MEPPSEQQQS------WKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREM 54
           M+ P+ Q Q+       KKM KQLT KRDDTPL S  R G++ ++ D +    + ELR +
Sbjct: 1   MDTPNAQPQAASASTPRKKMTKQLTGKRDDTPLHSAARAGNMTVLKDTVGGTEEGELRVL 60

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLK 114
           L+K N +GET LYVAAEYGYVDMVRE+I+Y+D + AGIKARNG+DA HIAAKQG L+++K
Sbjct: 61  LTKQNHAGETVLYVAAEYGYVDMVRELIQYYDLAGAGIKARNGFDALHIAAKQGDLDIVK 120

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ILMEA PEL MT D SNTTA+HTA+ QGH E+VK LLE GS LATI+RSNGKTALHSAAR
Sbjct: 121 ILMEAHPELSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATISRSNGKTALHSAAR 180

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
           NGHLE+VKALL KEP +  R DKKGQTA+HMAVKGQS+E+V+EL+K +P  INMVD KGN
Sbjct: 181 NGHLEVVKALLGKEPSVATRTDKKGQTAIHMAVKGQSLEVVEELIKADPSTINMVDNKGN 240

Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG 294
           +ALHIATRKGR +IV+ LL     D  V+N+S ETALDTAEKTG+SE+  IL EHGV   
Sbjct: 241 TALHIATRKGRARIVKLLLGQTETDALVVNRSGETALDTAEKTGNSEVKDILLEHGVRRA 300

Query: 295 KSIK--PQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAIN 352
           K+IK  P   +ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKRINKMHTEGLNNAIN
Sbjct: 301 KAIKAQPGTATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHTEGLNNAIN 360

Query: 353 STTVVAVLIATVAFAAIFSVPGQFADKPDELPP--KVSPGEAHIAPKTPFLIFIIFDSIA 410
           STTVVAVLIATVAFAAIF+VPGQFAD+P ++P    ++ GEA+IAP+  FLIF +FDSIA
Sbjct: 361 STTVVAVLIATVAFAAIFTVPGQFADEPKDIPAGSGMTIGEANIAPQAAFLIFFVFDSIA 420

Query: 411 LFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWA 470
           LFISLAVV+VQTSVV+IE KAKKQMMA+INKLMWLAC++ISVAFLALS++VVG D +  A
Sbjct: 421 LFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLA 480

Query: 471 VAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNN 530
           + VT IGT IM +T+GTMSYWVI +RIEAS +RSIR+SSM S SRS S SVM DSE LNN
Sbjct: 481 IGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNN 540

Query: 531 EIK-LYAV 537
           + K LYA+
Sbjct: 541 DRKILYAI 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547216|ref|XP_003542012.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/540 (67%), Positives = 433/540 (80%), Gaps = 6/540 (1%)

Query: 4   PSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGE 63
           P E+    +K K     KRDDTPL S  R G + ++ D+I    + EL E+L+K NQ GE
Sbjct: 21  PEEEHAKPRKKKTNSQGKRDDTPLHSAARAGKLAVLKDIILGTDETELHELLAKQNQDGE 80

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
           T LY+AAEYGYVD+VREMI+Y+D   AGIKARNG+DA HIAAKQG L+VLKILME  PEL
Sbjct: 81  TPLYIAAEYGYVDVVREMIQYYDLVDAGIKARNGFDALHIAAKQGDLDVLKILMEGHPEL 140

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
            MT D SNTTALHTA+ QGH E+VKFLLE GS+LATIARSNGKTALHSAARNGHLE+VKA
Sbjct: 141 SMTVDPSNTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVVKA 200

Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
           LL KEPG+  R DKKGQTALHMAVKGQ IE+V+EL+K +P +INM+D+KGN+ALHIATRK
Sbjct: 201 LLEKEPGVATRTDKKGQTALHMAVKGQKIEVVEELIKADPSLINMLDSKGNTALHIATRK 260

Query: 244 GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP---- 299
           GR QIV+ LL       + +N+  ETA+DTAEKTG+ E+  IL EHGV   ++IKP    
Sbjct: 261 GRAQIVKLLLEQKENVTSAVNRCGETAVDTAEKTGNHEVQAILLEHGVQSARTIKPPQGT 320

Query: 300 QANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAV 359
            A +ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH EGLNNAINSTTVVAV
Sbjct: 321 TATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAV 380

Query: 360 LIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVI 419
           LIATVAFAAIF+VPGQF D P+ +PP +S GEA+IAP+ PF+IF +FDSIALFISLAVV+
Sbjct: 381 LIATVAFAAIFTVPGQFVDDPNNIPPGMSLGEANIAPQAPFIIFFVFDSIALFISLAVVV 440

Query: 420 VQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTV 479
           VQTSVVVIE KAKKQMMAVINKLMWLAC++ISVAFLALS++VVG + +  A+ VT IGT 
Sbjct: 441 VQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGTT 500

Query: 480 IMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI--KLYAV 537
           IM +T+GTM YWVI +RIEAS +R+IR+SS+ S S+S S S   DSE LN+E   K+YA+
Sbjct: 501 IMATTLGTMCYWVIRHRIEASNLRNIRKSSLQSKSKSFSVSAFSDSELLNSEYYKKMYAI 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478657|ref|XP_002284522.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera] gi|297746150|emb|CBI16206.3| unnamed protein product [Vitis vinifera]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/539 (70%), Positives = 440/539 (81%), Gaps = 4/539 (0%)

Query: 3   PPSEQQQSW--KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQ 60
           P     QS   KKM KQLT KRDDTPL S  R G +E+V   +SS G+ EL E+LSK NQ
Sbjct: 4   PAGHHYQSLPRKKMTKQLTGKRDDTPLHSAARAGQLEVVARTLSSAGEEELLELLSKQNQ 63

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL 120
           SGETALYVAAEYGYVD+VREMI+YHD S A IKARNGYDAFHIAAKQG LEVLKILMEAL
Sbjct: 64  SGETALYVAAEYGYVDVVREMIQYHDLSTASIKARNGYDAFHIAAKQGDLEVLKILMEAL 123

Query: 121 PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI 180
           P L +T D SNTTALHTA++QG++EVV  LLE GS +A IA+SNGKTALHSAAR GHLE+
Sbjct: 124 PGLSLTEDVSNTTALHTAANQGYIEVVNLLLESGSGVAAIAKSNGKTALHSAARKGHLEV 183

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           +KALL KEPG+  R DKKGQTALHMAVKGQ++E+V+EL+K +P ++NMVD KGN+ALHIA
Sbjct: 184 IKALLEKEPGVATRIDKKGQTALHMAVKGQNLEVVEELMKADPSLVNMVDTKGNTALHIA 243

Query: 241 TRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ 300
           +RKGR QIV+KLL+ +  D   +NKS ETA DTAEKTG+  I  IL+EHGV   K++KPQ
Sbjct: 244 SRKGREQIVRKLLSHDETDTKAVNKSGETAFDTAEKTGNPNIATILQEHGVQSAKAMKPQ 303

Query: 301 ANS-ARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAV 359
             S ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKR+NKMH EGLNNAINSTTVVAV
Sbjct: 304 VTSTARELKQTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHGEGLNNAINSTTVVAV 363

Query: 360 LIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVI 419
           LIATVAFAAIF+VPGQ+ D P  +P   S GEA+IAPK  F+IF IFDSIALFISLAVV+
Sbjct: 364 LIATVAFAAIFTVPGQYVDDPTNIPYGFSLGEANIAPKISFIIFFIFDSIALFISLAVVV 423

Query: 420 VQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTV 479
           VQTSVVVIE KAKKQMMA+INKLMWLAC++ISVAFLAL+++VVGD  +  A+ VT IGT 
Sbjct: 424 VQTSVVVIESKAKKQMMAIINKLMWLACVLISVAFLALAFVVVGDHEKWLAIGVTIIGTT 483

Query: 480 IMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI-KLYAV 537
           IM +T+GTM YWVI +RIEA K+RS+RR SM S SRS + SVM DSE LNNE  K+YA+
Sbjct: 484 IMATTLGTMCYWVIRHRIEAKKMRSVRRMSMPSKSRSWTMSVMSDSEILNNEFKKMYAI 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460983|ref|XP_004148223.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449484926|ref|XP_004157019.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/540 (67%), Positives = 443/540 (82%), Gaps = 5/540 (0%)

Query: 3   PPSEQQQSW--KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQ 60
           PP+  + S   KKM KQLT KRDDTPL S  R G++   +++++   +M+LRE+L+K N 
Sbjct: 8   PPAAAETSLPRKKMTKQLTGKRDDTPLHSAARAGNLTAAMEILTDTDEMDLRELLAKQNH 67

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL 120
           SGETALYVAAEYGYVD+VRE+++Y+D + A IKARNG+DAFHIA KQG LE+L++LMEA 
Sbjct: 68  SGETALYVAAEYGYVDLVRELLKYYDLADAEIKARNGFDAFHIATKQGDLEILRVLMEAH 127

Query: 121 PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI 180
           PEL MT D SNTTALHTA++QGH+E+V FLLE GS LATIARSNGKTALHSAARNGHL +
Sbjct: 128 PELSMTVDISNTTALHTAATQGHIEIVDFLLEAGSGLATIARSNGKTALHSAARNGHLHV 187

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           ++ALL+KEP +  R DKKGQTAL MA KGQ++E+V+EL+K +P  INMVD KGN+ LHIA
Sbjct: 188 IRALLAKEPIVATRTDKKGQTALQMASKGQNLEVVEELIKADPSSINMVDNKGNTVLHIA 247

Query: 241 TRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ 300
            RKGR +IV+ LL  +  +   +N+S ETALDTAEKTG+ +I + LKEHGV   K+IKP+
Sbjct: 248 ARKGRAEIVRMLLRHSETNTKAVNRSGETALDTAEKTGNPDIALTLKEHGVQSAKAIKPE 307

Query: 301 A-NSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAV 359
             N ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKR+NKMH+EGLNNAINSTTVVAV
Sbjct: 308 VKNPARELKQTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHSEGLNNAINSTTVVAV 367

Query: 360 LIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVI 419
           LIATVAFAAIF+VPGQ+ D P+++P   S GEA+IAPK PF+IF IFDSIALFISLAVV+
Sbjct: 368 LIATVAFAAIFTVPGQYVDDPEDVPEGFSLGEANIAPKAPFIIFFIFDSIALFISLAVVV 427

Query: 420 VQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTV 479
           VQTSVVVIE +AKKQMMA+INKLMWLAC++ISVAFLALS++VVG+  +  A+ VT IGT 
Sbjct: 428 VQTSVVVIESQAKKQMMAIINKLMWLACVLISVAFLALSFVVVGEREKWLAIGVTLIGTT 487

Query: 480 IMVSTIGTMSYWVIVNRIEASKIRSIRRSSM-DSGSRSMSASVMLDSEFLNNEI-KLYAV 537
           IM +T+GTM YWVI +RIEAS +RSIR+SSM  S S+S S SVM DSE LNNE  K+YA+
Sbjct: 488 IMATTLGTMCYWVIKHRIEASNLRSIRKSSMGGSRSKSCSLSVMSDSEILNNEFKKMYAI 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568070|ref|XP_002525011.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223535673|gb|EEF37338.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/541 (68%), Positives = 440/541 (81%), Gaps = 8/541 (1%)

Query: 1   MEPPSEQQQSWK-KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN 59
           M+ P+ Q    + KM KQLT KRDD+P  +  R G++E VL+++S   + EL+E+LSK N
Sbjct: 1   MDGPARQTSFRRSKMTKQLTGKRDDSPFHAAARAGNLETVLEIVSETDEAELKELLSKQN 60

Query: 60  QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEA 119
           QSGETALYVAAEYG+V++V+EMI+Y+D  LAGIKARNGYDAFHIAAKQG L+ L +LMEA
Sbjct: 61  QSGETALYVAAEYGHVELVKEMIKYYDIGLAGIKARNGYDAFHIAAKQGDLKTLTVLMEA 120

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST-LATIARSNGKTALHSAARNGHL 178
            PEL MTFDSSNTTALH+A+SQGHVEVV FLLEKGS+ L TIA+SN KTALHSAARNGHL
Sbjct: 121 NPELAMTFDSSNTTALHSAASQGHVEVVNFLLEKGSSNLVTIAKSNSKTALHSAARNGHL 180

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
           EI++ALL KEPGI  R D+KGQTALHMAVKGQ++ELVDEL+  E  +INMVD+KGN+ LH
Sbjct: 181 EILRALLIKEPGIATRIDRKGQTALHMAVKGQNVELVDELIMSETCLINMVDSKGNTPLH 240

Query: 239 IATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 298
           IA RKGR QIV+KLL   G+DK  IN+S ETA DTAEKTG SE+  +L+EHGV   +S+K
Sbjct: 241 IAARKGRTQIVKKLLEHKGLDKIAINRSGETAFDTAEKTGQSEVASVLEEHGVQSARSMK 300

Query: 299 P-QANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVV 357
           P    +ARELKQ VSDIKHEVHDQ++ TR+TRK V GIAKR+NKMHTEGLNNAINSTTVV
Sbjct: 301 PGTTTTARELKQTVSDIKHEVHDQIQTTRQTRKRVQGIAKRLNKMHTEGLNNAINSTTVV 360

Query: 358 AVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAV 417
           AVLIATVAFAAI+ VPGQFAD P+ L    S GEA+ A K  F+IFIIFDSIALFISLAV
Sbjct: 361 AVLIATVAFAAIYQVPGQFADNPEHLALGQSAGEANAASKPEFMIFIIFDSIALFISLAV 420

Query: 418 VIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIG 477
           V+VQTS+VVIERKAKKQ+MAVINKLMWLAC++IS+AFLAL+Y+VVGD  +  A+ VT IG
Sbjct: 421 VVVQTSIVVIERKAKKQLMAVINKLMWLACVLISIAFLALAYVVVGDQEKWLALWVTGIG 480

Query: 478 TVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNE-IKLYA 536
           TVIM +TIGTM YWVI+ +IE+S++R    S     S S S SVM ++E L NE  KLYA
Sbjct: 481 TVIMAATIGTMCYWVIMQKIESSQLRRSSISR----SLSGSMSVMAETEILENEHKKLYA 536

Query: 537 V 537
           +
Sbjct: 537 I 537

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557461|ref|XP_003547034.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/545 (67%), Positives = 435/545 (79%), Gaps = 8/545 (1%)

Query: 1   MEPPSEQ--QQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKM 58
           M  P+ Q    + KKM KQLT KRDDTPL S  R G++ ++ D I    + EL E+L+K 
Sbjct: 59  MATPAMQAVNTTRKKMTKQLTGKRDDTPLHSAARAGNLAVLKDTILETDEAELHELLAKQ 118

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           NQ GET LY+AAEYGYVD+VREMI+Y+D + AGIKARNG+DA HIAAKQG L+VLKILME
Sbjct: 119 NQDGETPLYIAAEYGYVDVVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDVLKILME 178

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
             PEL MT D SNTTALHTA+ QGH E+VKFLLE GS+LATIARSNGKTALHSAARNGHL
Sbjct: 179 GHPELSMTVDPSNTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHL 238

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
            +VKALL KEPG+  R DKKGQTALHMAVKGQ+IE+V+EL+K +P  INMVD+KGN+ALH
Sbjct: 239 VVVKALLEKEPGVATRTDKKGQTALHMAVKGQNIEVVEELIKADPSSINMVDSKGNTALH 298

Query: 239 IATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 298
           IATRKGR QIV+ LL       + +N+  ETA+DTAEKTG+  +  IL EHGV   ++IK
Sbjct: 299 IATRKGRAQIVKLLLEQKENVTSAVNRCGETAVDTAEKTGNHAVQAILLEHGVESARTIK 358

Query: 299 P----QANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINST 354
           P     A +ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH EGLNNAINST
Sbjct: 359 PPQGTTATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINST 418

Query: 355 TVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFIS 414
           TVVAVLIATVAFAAIF+VPGQF D P+ +P  +S GEA+IAP+  F+IF +FDSIALFIS
Sbjct: 419 TVVAVLIATVAFAAIFTVPGQFVDDPNNIPAGMSLGEANIAPQATFIIFFVFDSIALFIS 478

Query: 415 LAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVT 474
           LAVV+VQTSVVVIE KAKKQMMAVINKLMWLAC++ISVAFLALS++VVG + +  A+ VT
Sbjct: 479 LAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVT 538

Query: 475 FIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI-- 532
            IGT IM +T+GTM YWVI +RIE S +RSIR+SS+ S S+S S S   DSE LN+E   
Sbjct: 539 IIGTTIMATTLGTMCYWVIRHRIETSNLRSIRKSSLQSKSKSFSVSAFSDSELLNSEYYK 598

Query: 533 KLYAV 537
           K+YA+
Sbjct: 599 KMYAI 603

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088591|ref|XP_002308487.1| predicted protein [Populus trichocarpa] gi|222854463|gb|EEE92010.1| predicted protein [Populus trichocarpa]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/491 (72%), Positives = 417/491 (84%), Gaps = 3/491 (0%)

Query: 14  MKKQLTAKRDDTPLQSLVRTGSVELVLDMIS-SYGDM-ELREMLSKMNQSGETALYVAAE 71
           M KQLT KRDDTP  ++VR G+++LV +M++ + G+  EL  MLSK NQSGETALYVA+E
Sbjct: 1   MTKQLTGKRDDTPFHAVVRAGNLKLVKEMVAENLGEAAELTVMLSKQNQSGETALYVASE 60

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
           Y +VD+V+E+I+Y+DT LA +KARNGYD FHIAAKQG LE++++LME  PEL +TFDSSN
Sbjct: 61  YSHVDIVKELIKYYDTGLASLKARNGYDTFHIAAKQGDLEIVEVLMEVDPELSLTFDSSN 120

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
           TTALH+A+SQGHVEVV FLLEK S LA IA+SNGKTALHSAARNGHLEI+KALLSKEPG+
Sbjct: 121 TTALHSAASQGHVEVVNFLLEKCSGLALIAKSNGKTALHSAARNGHLEILKALLSKEPGL 180

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
           V++ DKKGQTALHMAVKGQ++ELV+EL+  +P ++NMVD KGNSALHIA RKGR QIV+K
Sbjct: 181 VIKIDKKGQTALHMAVKGQTVELVEELIMSDPSLMNMVDNKGNSALHIAVRKGRDQIVRK 240

Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSA-RELKQA 310
           LL+  G+DK ++N+SRET  D AEK GH  I  IL+EHGV   KS+KP   +A RELKQ 
Sbjct: 241 LLDQQGIDKTIVNRSRETPFDIAEKNGHRGIASILEEHGVLSAKSMKPTTKTANRELKQT 300

Query: 311 VSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIF 370
           VSDIKH VH+QLE TR TRK V GIAKR+NKMHTEGLNNAINSTTVVAVLIATVAFAAIF
Sbjct: 301 VSDIKHGVHNQLETTRLTRKRVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIF 360

Query: 371 SVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERK 430
            +PGQF D PD L P  S GEA IAPK  F+IFIIFDSIALFISLAVV+VQTS+VVIERK
Sbjct: 361 QLPGQFVDNPDNLAPGQSAGEAKIAPKPEFMIFIIFDSIALFISLAVVVVQTSIVVIERK 420

Query: 431 AKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSY 490
           AKKQ+M+VINKLMWLAC++ISVAFLALSY+VVGDD +  A++VT IGT+IMV+TIGTM Y
Sbjct: 421 AKKQLMSVINKLMWLACVLISVAFLALSYVVVGDDEKWLALSVTVIGTIIMVTTIGTMGY 480

Query: 491 WVIVNRIEASK 501
           WVIV RIE SK
Sbjct: 481 WVIVQRIETSK 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.979	0.968	0.589	3.3e-157
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.906	0.929	0.595	3.8e-149
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.979	0.794	0.488	8.9e-125
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.973	0.834	0.480	3.6e-121
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.891	0.811	0.416	5.9e-89
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.880	0.779	0.410	1.6e-86
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.864	0.872	0.398	3.8e-85
ZFIN|ZDB-GENE-070615-8	489	ankdd1a "ankyrin repeat and de	0.519	0.570	0.312	2.5e-25
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.837	0.752	0.231	9.5e-24
UNIPROTKB|J9NTH2	2063	ANK2 "Uncharacterized protein"	0.577	0.150	0.302	4.8e-23

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
 Identities = 311/528 (58%), Positives = 385/528 (72%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
             KKM KQLT KRDDT L S VR G+ + V+++++   + EL ++L K NQSGETALYVAAE
Sbjct:    16 KKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAAE 75

Query:    72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
             YG V++V+EMI  +D +L  IKARNG+DAFHIAAKQG L+VLK+L EA  EL MT D SN
Sbjct:    76 YGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLSN 135

Query:   132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
             TTALHTA++QGH EVV FLLE GS+LA IA+SNGKTALHSA+RNGH++++KALL+ EP I
Sbjct:   136 TTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAI 195

Query:   192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
              +R DKKGQTALHMAVKG ++E+V+EL+K +   IN+ D KGN+ALHIA RKGR QIV+ 
Sbjct:   196 AIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIVKL 255

Query:   252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQA-NSARELKQA 310
             LL  N  D   +N+S ETALDTAEK G+ E+ +IL++HGVP  K+IKP   N ARELKQ 
Sbjct:   256 LLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKTIKPSGPNPARELKQT 315

Query:   311 VSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXX 370
             VSDIKHEVH+QLEHTR TRK V GIAK++NKMHTEGLNNAINS                 
Sbjct:   316 VSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAAIF 375

Query:   371 SVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERK 430
             +VPGQ+ +   ++P   S GEA+IA  TPF+IF IFDSIALFISLA          IE K
Sbjct:   376 TVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIESK 435

Query:   431 AKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSY 490
             AKKQMMAVINKLMWLAC++ISVAFLALS++VVG++ +  A+ VT IG  IM++T+GTM Y
Sbjct:   436 AKKQMMAVINKLMWLACVLISVAFLALSFVVVGEEEKWLAIWVTAIGATIMITTLGTMCY 495

Query:   491 WVIVNRIEXXXXXXXXXXXXXXXXXXXXXXVMLDSEFLNNEIK-LYAV 537
             W+I ++IE                       + DS+ L NE K +YA+
Sbjct:   496 WIIQHKIEAANLRNIRRSSINSISGSWGIPQLTDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
 Identities = 293/492 (59%), Positives = 364/492 (73%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
             K M KQ+TA+RDDTPL + VR G  +L+L+MI  +  +EL+E+L++ NQSGETALYVAAE
Sbjct:     6 KTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAE 65

Query:    72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
             YGY DMV+ ++++ D+ LAG KA+NG+DAFHIAAK G L+VL +L+EA PEL  TFDSS 
Sbjct:    66 YGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSK 125

Query:   132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
             TTALHTA+SQGH E+V FLL+KG  LA IARSNGKTALHSAARNGH  IVK L+ K+ G+
Sbjct:   126 TTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGM 185

Query:   192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
             V R DKKGQTALHMAVKGQ+ E+VD L++ +  +IN  D KGN+ LHIA RK R +IVQ 
Sbjct:   186 VTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQT 245

Query:   252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ-----ANSARE 306
             +L    V +  +NKS ETALD AEKTG  EI  +L++ G+   +SIKP      + S+R+
Sbjct:   246 VLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRK 305

Query:   307 LKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXX 366
             LK+ VS+I HEVH QLE T  TR+ + GIAKR+NKMHTEGLNNAINS             
Sbjct:   306 LKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAF 365

Query:   367 XXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXX 426
                 +VPGQ+ D P ++PP  S GEA  AP+  FLIF++FDS ALFISLA          
Sbjct:   366 AAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVV 425

Query:   427 IERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIG 486
             IER+AKKQMMA+INKLMW+ACIMISVAF++LS++VVG+  +  AV VT IG +IMVST+G
Sbjct:   426 IERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLG 485

Query:   487 TMSYWVIVNRIE 498
             TM YWVI NRIE
Sbjct:   486 TMCYWVIANRIE 497

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 263/538 (48%), Positives = 353/538 (65%)

Query:     6 EQQQSW---KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSG 62
             E+Q S+   ++ K +   KR D+ L    RTG++  V ++I   GD EL+E+LSK N  G
Sbjct:   131 ERQLSFIGERRKKNESPGKRGDSSLHIAARTGNLSKVKELIRGCGD-ELKELLSKQNLEG 189

Query:    63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
             ET LY AAE G+  +V EM+++ D   A I ARNG+D FH+AAKQG LEVLKIL+E  P 
Sbjct:   190 ETPLYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPN 249

Query:   123 LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK 182
             L MT D S TTALHTA++QGH++VV  LLE  S LA IA++NGKTALHSAAR GH+E+VK
Sbjct:   250 LAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVK 309

Query:   183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR 242
             +L+ K+P I  R DKKGQTALHMAVKGQ+  +V ELVK +  ++++ D KGN+ LHIAT 
Sbjct:   310 SLIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATN 369

Query:   243 KGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI-KPQA 301
             KGR++IV+ L++  G++   INK+ +T LD +EK G++E+  +LKE G    K + KPQ 
Sbjct:   370 KGRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQ- 428

Query:   302 NSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXX 361
             N A++LKQ VSDIKHEV  QL+ +R+T   V  IAKR+ K+H  GLNNAINS        
Sbjct:   429 NPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLI 488

Query:   362 XXXXXXXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXX 421
                      ++PGQ+ +  D    ++  G+AHIA K PFL+F IFDS+ALFISLA     
Sbjct:   489 ATVAFAAIFTIPGQYEE--DRSKGELL-GQAHIANKAPFLVFFIFDSLALFISLAVVVVQ 545

Query:   422 XXXXXIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIM 481
                  IE+KAKK+++ VINKLMW AC+ IS+AF++LSYIVVG +    AV  T IG  IM
Sbjct:   546 TSVVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIM 605

Query:   482 VSTIGTMSYWVIVNRIEXXXXXXXXXXXXXXXXXXXXXXVMLDSEFLNNEI--KLYAV 537
             ++TIG M Y V+++R+E                      +  DS+ LN E   ++YA+
Sbjct:   606 LTTIGAMCYCVVMHRMEESKLRSIRKERSKSQSFSMSR-MPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 254/529 (48%), Positives = 339/529 (64%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSY-GDMELREMLSKMNQSGETALYVAA 70
             +K K     KR D+PL    RTG++  V+++I +  G  EL+E+ SK N  GET LY AA
Sbjct:   102 RKKKTDSPGKRGDSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAA 161

Query:    71 EYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSS 130
             E G+  +V EM+++ D   A +KARNG+D FH+AAKQG +E LK L+E  P L MT D S
Sbjct:   162 ENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLS 221

Query:   131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
              TTALHTA+SQGH +VV  LL+  S LA IA++NGKTALHSAAR GH E+VK+L+  +  
Sbjct:   222 CTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDAS 281

Query:   191 IVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
             I  R DKKGQTALHMAVKGQ+  +V ELVK +P I+++ D+KGN+ LH AT KGR++IV+
Sbjct:   282 IGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVR 341

Query:   251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQA 310
              L++ +G++   +NK+ +TALD AEK G+ E+  +LKE G    K +    N A++L Q 
Sbjct:   342 CLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQLNQT 401

Query:   311 VSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXX 370
             VSDIKHEV  QL+ +R+T   V  IAKR+ K+H  GLNNAINS                 
Sbjct:   402 VSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFAAIF 461

Query:   371 SVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERK 430
             ++PGQ+ +  D     +  GEA IA K PFL+F IFDS+ALFISLA          IE+K
Sbjct:   462 TIPGQYEE--DRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQK 519

Query:   431 AKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSY 490
             AKK ++ VINKLMWLAC+ ISVAF++LS+IVVG +    A+  T IG  IM++TIG M Y
Sbjct:   520 AKKNLVFVINKLMWLACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIMLTTIGAMCY 579

Query:   491 WVIVNRIEXXXXXXXXXXXXXXXXXXXXXXVMLDSEFLNNEI--KLYAV 537
              V+++RIE                      +  +SE LN E   ++YA+
Sbjct:   580 CVVMHRIEESKLKSLRKERSKSKSFSLSH-MPSESEILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 211/506 (41%), Positives = 295/506 (58%)

Query:     8 QQSWKKMKKQLTAKRDDTPLQSLVRTG---SVELVLDMISSY--G-------DMELREM- 54
             Q   KK  KQ+T + +DT L    + G   +V+ +L  I+S   G       D E+ E+ 
Sbjct:    59 QAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIR 118

Query:    55 ---LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE 111
                ++++N+ GETAL+ AA+ G++D+V+E+++Y        K R+GYD  HIAA QG   
Sbjct:   119 ASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHA 178

Query:   112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
             ++++L++    L  TF  SN T L +A+ +GH EVV  LL K   L  I+RSN K ALH 
Sbjct:   179 IVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHL 238

Query:   172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
             AAR GH+E++KALLSK+P +  R DKKGQTALHMAVKGQS E+V  L+  +P I+   D 
Sbjct:   239 AARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDK 298

Query:   232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
               N+ALH+ATRK R +IV+ LL++   +   + +  +TALD AE    SE    +KE   
Sbjct:   299 SCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLA 358

Query:   292 PCGKSIKPQANSAR-ELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNA 350
               G     + N  R EL+  V+ IK++VH QLE T+ T K+VH I+K + K+H EG+NNA
Sbjct:   359 RSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNA 418

Query:   351 INSXXXXXXXXXXXXXXXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIA 410
              NS                 +VPG   D  D        G A +  +  F IF IF+++A
Sbjct:   419 TNSVTVVAVLFATVAFAAIFTVPG--GDNND--------GSAVVVGRASFKIFFIFNALA 468

Query:   411 LFISLAXXXXXXXXXXIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWA 470
             LF SLA           E KA+K+++ VINKLMWLA +  SVAFLA SYIVVG      A
Sbjct:   469 LFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAA 528

Query:   471 VAVTFIGTVIMVSTIGTMSYWVIVNR 496
               VT +G VIM   +GTM+Y+V+ ++
Sbjct:   529 ELVTVVGGVIMAGVLGTMTYYVVKSK 554

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 207/504 (41%), Positives = 296/504 (58%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTG---SVELVLDMISSY--G-------DMELREMLS--- 56
             KK  KQ+T + +DT L    + G   SV+ +L  I S   G       D E+ ++++   
Sbjct:    77 KKYVKQVTGRHNDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSVV 136

Query:    57 -KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVL 113
              ++N+ GET L+ AAE G +D+V+E++ Y  T++  +  +N  G+DA HIA  QG   ++
Sbjct:   137 NEVNELGETPLFTAAEKGNIDVVKELLPY--TTIESLMQKNLSGFDALHIACSQGHRSIV 194

Query:   114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA 173
             ++L+E  P+L  T   SN T L +A+++GH EVV  LL K S+L  I+RSNGK ALH AA
Sbjct:   195 QLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAA 254

Query:   174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
             R GH++IV+ LL K+P +  R DKKGQT+LHMAVKG S ++V  L++ +P I+ + D  G
Sbjct:   255 RQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFG 314

Query:   234 NSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293
             N+ LHIATRK R +IV +LL +   +   + +  +TA D AE   HSE    +KE    C
Sbjct:   315 NTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEILSRC 374

Query:   294 GKSIKPQANSAR-ELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAIN 352
             G     + N  R EL++ V++IK +VH QLE TR+T K+V GIAK + K+H  G+NNA N
Sbjct:   375 GALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNATN 434

Query:   353 SXXXXXXXXXXXXXXXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALF 412
             S                 +VPG   D           G A +   T F IF IF++IALF
Sbjct:   435 SVTVVAVLFATVAFAAIFTVPGGDDDH----------GVAVMVHATSFKIFFIFNAIALF 484

Query:   413 ISLAXXXXXXXXXXIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVA 472
              SLA           E K +++++ VINKLMWLA +  +VAF++ SYIVVG   R  AV 
Sbjct:   485 TSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGRRNRYAAVV 544

Query:   473 VTFIGTVIMVSTIGTMSYWVIVNR 496
             VT IGTV M   +  M+Y+V+ ++
Sbjct:   545 VTVIGTVTMTGILSIMTYYVVKSK 568

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 191/479 (39%), Positives = 285/479 (59%)

Query:    23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
             D + LQ LV   + + ++D  S      + E++S  N +GETA+Y++A     D+ R +I
Sbjct:    22 DLSQLQQLVDNLTGDELIDESSPCS--AVAELMSVQNDAGETAVYISAAENLEDIFRYLI 79

Query:    83 RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
             R+       I++++  +AFH+AAK+G L ++K L+   PEL    D+SNT+ L+ A+ Q 
Sbjct:    80 RFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQD 139

Query:   143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
             H+E+V  +L+   + A I R NGKT+LH+A R G L IVKAL+ K+  IV   DKKGQTA
Sbjct:   140 HLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTA 199

Query:   203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV 262
             LHMAVKG+S+E+V+E+++ +  I+N  D KGN+ALHIATRK R QI   LL    ++   
Sbjct:   200 LHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNA 259

Query:   263 INKSRETALDTAEKTGHSE----IGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEV 318
             IN  +ETA+D A+K  +SE    I   L E G   G+ I  + + AR LK+AVSDIKHEV
Sbjct:   260 INNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRE-DEARALKRAVSDIKHEV 318

Query:   319 HDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXXSVPGQFAD 378
               QL    +T + V GIAK + K+H E + N  NS                 ++PGQ+  
Sbjct:   319 QSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFT 378

Query:   379 KPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERKAKKQMMAV 438
             +   +      G+A+IA +T F +F + ++ +LFISLA           + +A+K++++V
Sbjct:   379 EGSHV------GQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSV 432

Query:   439 INKLMWLACIMISVAFLALSYIVVGDDGRGW-AVAVTFIGTVIMVSTIGTMSYWVIVNR 496
             +NKLMW AC     AFLA+++ VVG  G  W A+ +T +G  I+V T+ +M Y+V   R
Sbjct:   433 VNKLMWAACACTFGAFLAIAFAVVGK-GNSWMAITITLLGAPILVGTLASMCYFVFRQR 490

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-070615-8 ankdd1a "ankyrin repeat and death domain containing 1A" [Danio rerio (taxid:7955)]

 Score = 308 (113.5 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 92/294 (31%), Positives = 160/294 (54%)

Query:    48 DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQ 107
             D+E    L+K+  SG+TA ++AAE+G++++V  +I         +K ++G  A H+AAKQ
Sbjct:   136 DLE-NVQLNKVENSGKTAFHLAAEHGHLEVVEFLIGMGCAH--NLKDKHGNTALHLAAKQ 192

Query:   108 GCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT 167
             G  +VL+ +ME   E +   +    TALH AS  GH E ++ LLE G  +  +  S  +T
Sbjct:   193 GHSDVLQKIMET-GENIDERNIDGMTALHLASEGGHYECIRLLLEAGCNVNELTDSK-RT 250

Query:   168 ALHSAARNGHLEIVKALLSKEPGIVLRN-DKKGQTALHMAVKGQSIELVDELVKVEPVII 226
             ALH  A++     V+ L+  + GI L + D +  +ALH+AV   S E+V +L++     +
Sbjct:   251 ALHLVAQHASASEVRLLI--QAGINLDSVDTQHVSALHLAVLNNSTEIVKDLIEAG-CDL 307

Query:   227 NMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGH-SEIGVI 285
             ++ D +  +ALHIA   GR+ I + +L I+GV+  +++K  +++LD A +  H + + +I
Sbjct:   308 DIFDNRLQTALHIAAEHGRLNIAETIL-ISGVNLNLLDKQGKSSLDVAARGNHVNVVDMI 366

Query:   286 LK-EHGVPCGKSIKPQANSAREL--KQAVSDIKH-EVHDQLEHTRETRKHVHGI 335
             +K +      K  +P+    R +  K A   +K  E      H + +  H+  I
Sbjct:   367 IKADRFYKWEKDHQPETQHIRSVLWKLASRFLKPGEWKTLARHWKFSEAHIRAI 420

GO:0007165 "signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 9.5e-24, P = 9.5e-24
 Identities = 111/480 (23%), Positives = 207/480 (43%)

Query:    24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
             +TPL      G++ ++  M+ + G+ E      K+N+ G+TA  +A     V+  R ++ 
Sbjct:   103 NTPLHLAAEIGNINILWKMLET-GEAECM----KINKQGQTAFILACLNNNVNSARILVE 157

Query:    84 YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH 143
                TS   +   N   AF   ++Q  + ++  ++E  P L++  D   +T LH A   G+
Sbjct:   158 --GTSSMTMVELNA--AF---SEQQQV-IIDSILEKFPNLILDADEEQSTLLHKACKSGN 209

Query:   144 VEVVKFLLEK--GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV-LRNDKKGQ 200
             +E+ + LL+      +A     +G T LH A  NG +EI+K  L K P    +      +
Sbjct:   210 LEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSVEILKEFLCKAPSSFNITTQGTIE 269

Query:   201 TALHMAVKGQSIELVDELVKVEPV--IINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
             T  H+A K Q  +    + +   +  ++  +DA+ N+ LH+A       +V+ +L+   +
Sbjct:   270 TVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNTVLHVAASVDSTSLVRHILSETTI 329

Query:   259 DKAVINKSRETALDTAEKTG--HSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKH 316
             D  + NK    A+D  +K G     + +  ++      +  +     A E  + + +  +
Sbjct:   330 DVTLKNKKGFAAVDLIDKEGVDFPLLSLWFRDEAEKIQRPAR-YVKFAHEPVELIRNTNN 388

Query:   317 -EVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXXSVPGQ 375
              E         +  +       +  +MH+E L NA N+                 + PG 
Sbjct:   389 GEKLSSESRAMDLLREGRDPRNKEREMHSESLQNARNTITIVAVLIASVAFTCGINPPGG 448

Query:   376 FADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERKAKKQM 435
                      P +  G+A       F IF + ++IALF SL+             KA K  
Sbjct:   449 VHQDG----PFI--GKATAGRTLAFKIFSVANNIALFTSLSIVTLLVSIISYRTKALKMC 502

Query:   436 MAVINKLMWLACIMISVAFLALSYIVVG-DDGRGWAVAVTF-IGTVIMVSTIGTMSYWVI 493
             + + +K+MWLA   ++ A+ A ++I V  ++G  W V  T  I +V + S    +S+ ++
Sbjct:   503 VVIAHKMMWLAVASMATAYAASAWITVPHNEGSKWLVYTTSAIASVALGSMFVYVSFMMV 562

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|J9NTH2 ANK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 300 (110.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 103/340 (30%), Positives = 169/340 (49%)

Query:    25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             TP+      G + +VL ++ +    ++       N  GETAL++AA  G V++VR ++R 
Sbjct:   450 TPIHVAAFMGHLNIVLLLLQNGASPDVT------NIRGETALHMAARAGQVEVVRCLLR- 502

Query:    85 HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQG 142
              + +L   +AR      HIA++ G  E++++L++  A P+   T   +  T LH ++ +G
Sbjct:   503 -NGALVDARAREEQTPLHIASRLGKTEIVQLLLQHMAHPDAATT---NGYTPLHISAREG 558

Query:   143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
              V+V   LLE G+   ++A   G T LH AA+ G L++ K LL +         K G T 
Sbjct:   559 QVDVASVLLEAGAA-HSLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAG-KNGLTP 616

Query:   203 LHMAVKGQSIELVDELVKVEPVIINMVDAK-GNSALHIATRKGRVQIVQKLLNINGVDKA 261
             LH+A    + ++   L+ +E        AK G + LHIA +K ++QI   LLN  G +  
Sbjct:   617 LHVAAHYDNQKVA--LLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNY-GAETN 673

Query:   262 VINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANS----ARELKQAVSDI--K 315
             ++ K   T L  A + GH+++  +L + G     S K    S    A+E K  V+DI  K
Sbjct:   674 IVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHMSTKSGLTSLHLAAQEDKVNVADILTK 733

Query:   316 H----EVHDQLEHTRETRKHVHGIAKRINKMHTEGLN-NA 350
             H    + H +L +T       +G  K +N +  +G N NA
Sbjct:   734 HGADQDAHTKLGYTPLIVACHYGNVKMVNFLLKQGANVNA 773

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023105001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (529 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018032001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (222 aa)			•						0.471

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	537
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-30
pfam13962	114	pfam13962, PGG, Domain of unknown function	8e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-26
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-14
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	1e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	3e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	8e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.002
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  115 bits (290), Expect = 1e-30
 Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D    T LH A+S GH+EVVK LLE G+ +     ++G+T LH AA+NGHLEIVK LL K
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
              +  R DK G T LH+A +  ++++V  L+K     +N  D  G + LH+A + G ++
Sbjct: 63  GADVNAR-DKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 248 IVQKLL 253
           +V+ LL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  112 bits (283), Expect = 8e-30
 Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 345 EGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTP-FLIF 403
           E L    NS  VVA LIATV FAA F+ PG +             G   +A K   F  F
Sbjct: 2   EWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDG----GHHAGTPILAGKPRRFKAF 57

Query: 404 IIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIV 461
            + ++IA   SL  VI+   +V    +   +++A+   L+WL+ + + VAF A SY V
Sbjct: 58  FVSNTIAFVASLVAVILLLYIVPSFSRRLPRLLAL-LTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (268), Expect = 1e-27
 Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 3/128 (2%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
            +  +G    H+AA  G LEV+K+L+E   ++    D+   T LH A+  GH+E+VK LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           EKG+ +    + +G T LH AARNG+L++VK LL     +  R DK G+T LH+A K   
Sbjct: 61  EKGADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGH 118

Query: 212 IELVDELV 219
           +E+V  L+
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  106 bits (266), Expect = 2e-27
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 3/124 (2%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE 222
            +G+T LH AA NGHLE+VK LL     +  + D  G+T LH+A K   +E+V  L++ +
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLE-K 62

Query: 223 PVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
              +N  D  GN+ LH+A R G + +V+ LL  +G D    +K   T L  A K GH E+
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 283 GVIL 286
             +L
Sbjct: 122 VKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (259), Expect = 2e-26
 Identities = 46/127 (36%), Positives = 76/127 (59%), Gaps = 4/127 (3%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           ++ G T L++AA  G++++V+ ++          K  +G    H+AAK G LE++K+L+E
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN--AKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
              ++    D    T LH A+  G+++VVK LL+ G+ +      +G+T LH AA+NGHL
Sbjct: 62  KGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHL 119

Query: 179 EIVKALL 185
           E+VK LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
            H+AAK G LE++K+L+E   ++         TALH A+  G++E+VK LLE G+ +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN---LGDTDTALHLAARNGNLEIVKLLLEHGADV-NA 56

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN 195
              +G TALH AARNG+LEIVK LL     I L++
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 4/91 (4%)

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           LH A+  G++E+VK LLEKG   A +   +  TALH AARNG+LEIVK LL     +  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
            DK G TALH+A +  ++E+V  L++    I
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
           LH AA+NG+LE+VK LL K   +   N     TALH+A +  ++E+V  L++     +N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHG-ADVNA 56

Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN 264
            D  GN+ALH+A R G ++IV+ LL  +G D  + +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLE-HGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
           D+ G+T LH+A     +E+V  L++     +N  D  G + LH+A + G ++IV+ LL  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE- 61

Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            G D    +K   T L  A + G+ ++  +L +HG
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 72.9 bits (178), Expect = 2e-14
 Identities = 55/256 (21%), Positives = 87/256 (33%), Gaps = 36/256 (14%)

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
                ++  ++      L+    +       +A          +L   +   L   D   
Sbjct: 14  CFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDG 73

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
              LH+A+S+G  ++VK LL  G+ +      +G T LH AA NG+              
Sbjct: 74  RLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPE----------- 121

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGRVQIV 249
                              +IE+   L++   +  + N+ D  GN+ LH A   G   IV
Sbjct: 122 ------------------GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 250 QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQ 309
           + LL   G D    N    TALD A K G  E+  +L + G+        + N       
Sbjct: 164 ELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL---KFNLEGVANA 219

Query: 310 AVSDIKHEVHDQLEHT 325
            VS         L   
Sbjct: 220 NVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             TALH A+  G +E+VK+LLEKG  +      +G TALH AA NG+LE++K LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.0 bits (147), Expect = 2e-10
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 14/175 (8%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQG---- 108
           L+  +  G   L+ AA  G   +V+ ++     S A + A++  G    H+AA  G    
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 109 -CLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG 165
             +EV K+L+E  A  ++    D    T LH A+  G  ++V+ LLE G+   +   S G
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS-RNSYG 180

Query: 166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
            TAL  AA+NG +E+VK LL K   + L        A     K   + L   ++ 
Sbjct: 181 VTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 37/275 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL   +R+G  ++V   I    D      ++ +N      L  A + G  D+++ +I  
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGAD------INHINTKIPHPLLTAIKIGAHDIIKLLIDN 90

Query: 85  H-DTSL--------------------AGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             DTS+                      IK        H A K+G LE +K+L E   ++
Sbjct: 91  GVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV 150

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
            +  D+     +H A      +++K LLEKG+  A +  +NG++ LH+AA  G    +K 
Sbjct: 151 NIEDDNGC-YPIHIAIKHNFFDIIKLLLEKGA-YANVKDNNGESPLHNAAEYGDYACIKL 208

Query: 184 LLSKEPGIVLRNDKKGQTALHMAV--KGQSIELVDELVKVEPVIINMVDAKGNSALHIAT 241
           L+     I+ +  K G T LH A+     +IEL+     +    IN  D  G++ LH A 
Sbjct: 209 LIDHGNHIMNKC-KNGFTPLHNAIIHNRSAIELL-----INNASINDQDIDGSTPLHHAI 262

Query: 242 RKGRVQIVQKLLNINGVDKAVINKSRETALDTAEK 276
                  +  +L  +  D ++ +   E  +DTA K
Sbjct: 263 NPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
               TPL    + G +E+V  ++    D+  R      ++ G T L++AA  G +D+V+ 
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR------DKDGNTPLHLAARNGNLDVVKL 91

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
           ++++        + ++G    H+AAK G LEV+K+L+
Sbjct: 92  LLKHGA--DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 29/223 (13%)

Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGC-----LEVLKILMEAL 120
           LY+A E   +D+V +++  +   +     +N     H  +          E++K+L+E  
Sbjct: 39  LYLAKEARNIDVV-KILLDNGADIN-SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 121 PELLMTFDSSNTTALHTASSQ--GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH- 177
             +    D++  T L  A S+      +V++LL+ G+ +  I  S+G+  LH    +   
Sbjct: 97  ANVNAP-DNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKI 154

Query: 178 -LEIVKALLSKEPGIVLRN---------------DKKGQTALHMAVKGQSIELVDELVKV 221
            L+I+K L+ K   I  +N               D  G T LH AV   + E V  L+ +
Sbjct: 155 DLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL 214

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN 264
                N+V+  G++ LHIA      +I + LLN     K +I 
Sbjct: 215 G-ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           G  A H AA  G LE++K L+E   ++  T D    TALH A+  G++EV+K LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 286
           N  D  G + LH+A   G +++V+ LL  NG D    +    T L  A K GH EI  +L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 287 KEHGV 291
            E G 
Sbjct: 60  LEKGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 32/216 (14%)

Query: 101 FHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHV-----EVVKFLLEK 153
            ++A +   ++V+KIL++  A      +   +N+T LH  S+  +      E+VK LLE 
Sbjct: 39  LYLAKEARNIDVVKILLDNGADIN---SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95

Query: 154 GSTLATIARSNGKTALHSAARN--GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           G+ +      NG T L  A         IV+ LL     + ++N   G+  LH+ ++   
Sbjct: 96  GANVNAPDN-NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNK 153

Query: 212 IEL------------VDELVKVEPVI-----INMVDAKGNSALHIATRKGRVQIVQKLLN 254
           I+L            ++   +V  ++     IN+ D  G + LH A      + V+ LL+
Sbjct: 154 IDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD 213

Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           + G +  ++NK  +T L  A    + EI  +L  +G
Sbjct: 214 L-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           LL   P  +   D  G T LH+A K  ++ELV  L+K   V +N+ D+ G +AL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 62/267 (23%), Positives = 105/267 (39%), Gaps = 38/267 (14%)

Query: 51  LREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH-IAAKQGC 109
           ++EM+  +N+       VA        +++     +  +  I   N Y     I      
Sbjct: 86  MKEMIRSINKCSVFYTLVA--------IKDAFNNRNVEIFKIILTNRYKNIQTIDLVYID 137

Query: 110 ---------LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
                     E+ K+L+    ++ M       TALH A+      + + LL  G+ +   
Sbjct: 138 KKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP 197

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV-KGQSIELVDEL- 218
            ++N  + LH A ++ +  IV  LL        R DK G T LH++V   +  +++  L 
Sbjct: 198 DKTN-NSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLL 255

Query: 219 -----VKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDT 273
                V  +  I+ +      +ALH + +  R     KLL   G D   +N  + T L +
Sbjct: 256 EHGVDVNAKSYILGL------TALHSSIKSER---KLKLLLEYGADINSLNSYKLTPLSS 306

Query: 274 AEKTGHS-EIGVILKEHGVPCGKSIKP 299
           A K      IG IL  + +   K IKP
Sbjct: 307 AVKQYLCINIGRILISN-ICLLKRIKP 332

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
           TALH A     +ELV  L++ + V IN  D  GN+ALHIA   G +++++ LL
Sbjct: 3   TALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 26/98 (26%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 31  VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLA 90
            + G++ELV  ++    D+ L +         +TAL++AA  G +++V+ ++ +     A
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDT--------DTALHLAARNGNLEIVKLLLEHG----A 52

Query: 91  GIKAR--NGYDAFHIAAKQGCLEVLKILMEALPELLMT 126
            + A+  +G  A H+AA+ G LE++K+L+E   ++ + 
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
           TALH AA +G LE+VK LL K    + R D+ G TALH+A +  ++E++  L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGV-DINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 150 LLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 206
           LLE G         NG T LH AA+ G LE+V+ LL K    +   D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA 274
           L++  P+ +N  D  GN+ LH+A + G +++VQ LL   GVD  + +    TALD A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 56/240 (23%), Positives = 95/240 (39%), Gaps = 62/240 (25%)

Query: 49  MELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG 108
            EL   LS     G+T L+  +   YVD V  ++ +   +      R          +  
Sbjct: 69  TELLLNLSCRGAVGDTLLHAISL-EYVDAVEAILLHLLAA-----FRKSGPLELANDQYT 122

Query: 109 CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG--- 165
                            T      TALH A+ + + E+VK LLE+G+++   AR+ G   
Sbjct: 123 SEF--------------TPG---ITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFF 163

Query: 166 -KTALHSAARNGHLEI----------VKALLSKEPGIVLRNDKKGQTALHMAV-----KG 209
            K+    +  +G   +          + ALLS++P  +L  D  G T LH+ V     K 
Sbjct: 164 VKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKA 223

Query: 210 QSIELV--------------DELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
           +  EL                +  ++E VI+N    +G + L +A ++GR+ + +  L I
Sbjct: 224 EYEELSCQMYNFALSLLDKLRDSKELE-VILNH---QGLTPLKLAAKEGRIVLFRLKLAI 279

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 29/198 (14%)

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK---- 187
           TT L  A   G  ++V+  ++ G+ +  I  +     L +A + G  +I+K L+      
Sbjct: 36  TTPLIDAIRSGDAKIVELFIKHGADINHI-NTKIPHPLLTAIKIGAHDIIKLLIDNGVDT 94

Query: 188 -----------------EPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMV 229
                            + GI V   D + +T LH A+K   +E +  L +     +N+ 
Sbjct: 95  SILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG-ADVNIE 153

Query: 230 DAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
           D  G   +HIA +     I+ KLL   G    V + + E+ L  A + G      +L +H
Sbjct: 154 DDNGCYPIHIAIKHNFFDII-KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH 212

Query: 290 G----VPCGKSIKPQANS 303
           G      C     P  N+
Sbjct: 213 GNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 23  DDTPLQSLVRTGS---VELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYV-DMV 78
             TPL   +   S    ++V  ++ +  D+   E        G T L++        D++
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER------CGFTPLHLYLYNATTLDVI 100

Query: 79  REMIRYHDTSLAGIKARNGYD--AFHIAAKQGCL--EVLKILME--ALPELLMTFDSSNT 132
           + +I+      A + A++       H+      +  +V+++L+   A    L   D    
Sbjct: 101 KLLIKAG----ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL---DLYGM 153

Query: 133 TALH--TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL--EIVKALLSKE 188
           T L     S   +VE+++ L++ G+ +        ++ LH   ++      IV+ L+   
Sbjct: 154 TPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAG 212

Query: 189 PGIVLRNDKKGQTALHMAVKGQSIE--LVDELVKVEPVIINMVDAKGNSALHIAT 241
                 +   G T LH    G S +  LV  L+ +  + IN  +  G + LH A 
Sbjct: 213 CDPAATDML-GNTPLHSMATGSSCKRSLVLPLL-IAGISINARNRYGQTPLHYAA 265

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196
           +G T LH AARNGHLE+VK LL     +  R+ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
           D    T LH A + GHV+VV+ LLE G+   T+   +GKT L  A  NG  E+V+ L  
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 47  GDMELREMLSKMN--------QSGETALYVAAEYGYVDMVREMIRYH-DTSLAGIKARNG 97
           GD++  E L  +         + G T L++A     +D+++ +I    D     I   + 
Sbjct: 79  GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD---IPNTDK 135

Query: 98  YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL 157
           +   H+A   G ++ +++L++    L +  D    T L  A ++G + + K LL+ G+ +
Sbjct: 136 FSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Query: 158 ATIARSNGKTALHSAARNGHLEIVKALLSK 187
               ++    AL  A  N  ++IV+  + +
Sbjct: 195 DYFGKNGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170
           E  P  L   D +  T LH A+  G +E+V++LL+ G  L  +  S+G TAL 
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALD 54

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 47/205 (22%)

Query: 131 NTTALHT---ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH-LEIVKALLS 186
             T LH     SS+   ++V+ LLE G+ +    R  G T LH    N   L+++K L+ 
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC-GFTPLHLYLYNATTLDVIKLLIK 105

Query: 187 K------------------------EPGIV---LRN-------DKKGQTALHMAVK--GQ 210
                                     P ++   LR        D  G T L + +K    
Sbjct: 106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNA 165

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHI--ATRKGRVQIVQKLLNINGVDKAVINKSRE 268
           ++EL+  L+     +   VD +  S LH    + K R +IV++L+   G D A  +    
Sbjct: 166 NVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGN 223

Query: 269 TALDTAEKTGHSEIGVILK--EHGV 291
           T L +       +  ++L     G+
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIAGI 248

Length = 471

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 126 TFDSSNTTALHTASSQGHV--EVVKFLLEKGSTLATIARSNGKTALH---SAARNGHLEI 180
             +    T + +   +  V  E++KFL+E G+ +    R N  +ALH   S  +N   EI
Sbjct: 46  DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEI 105

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQS--IELVDELVKVEPVIINMVDAKGNSALH 238
           +K L+     I    D+ G+  LHM +   +  I ++  L+      +N  D   N+ L+
Sbjct: 106 LKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILY 163

Query: 239 --IATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
             I     + +I   L ++ G+D    NKS     D
Sbjct: 164 SYILFHSDK-KIFDFLTSL-GIDINETNKSGYNCYD 197

Length = 209

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 111 EVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170
            +  I+ME   +L           L+ A    +++VVK LL+ G+ + +    N  T LH
Sbjct: 17  NIKYIIME--DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSST-KNNSTPLH 73

Query: 171 SAARNGH-----LEIVKALLSKEPGIVLRNDKKGQTALHMAV--KGQSIELVDELVKVEP 223
             +   +      EIVK LL      V   D  G T L  A+  K  S  +V+ L+    
Sbjct: 74  YLSNIKYNLTDVKEIVKLLLEYG-ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NG 131

Query: 224 VIINMVDAKGNSALHIATRKGRV--QIVQKLLNINGVDKAVINK 265
             +N+ ++ G + LH+     ++  +I++ L++  GVD    N+
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNR 174

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
           H          NG    H+AAK G LE+++ L++     L   DS   TAL  A
Sbjct: 4   HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 133 TALHTASSQGHVEVVKFLLEKG 154
           T LH A+  GH+EVVK LLE G
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGI 191
           +G+T LH AA NG+LE+VK LL K   I
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 361 IATVAFAAI------FSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFIS 414
           I+T+ +  +      FS+P        ELP             T  +I ++   I LF+ 
Sbjct: 401 ISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILIISLLIGVIHLFLG 460

Query: 415 LAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYI--VVGDDGRGWAVA 472
           L +  +         +      A + +L WL  I++ +  + L     VVG    G    
Sbjct: 461 LLLGFIN------NVRKGDYKDAFLAQLGWL-LILLGILLIVLGGFGLVVGLGPLGLIGK 513

Query: 473 VTFIGTVIMV 482
              IG V+++
Sbjct: 514 YLIIGGVVLI 523

Length = 646

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 31/169 (18%)

Query: 136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA----RNGHLEIVKALLSKEPGI 191
              ++ G VE+ +   ++ +T   I R+     L   A     +GHL             
Sbjct: 6   TAGNNLGAVEIDE---DEQNTFLRICRTGNIYELMEVAPFISGDGHL------------- 49

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM---VDAK----GNSALHIATRKG 244
           + R D  G+   HM       +  + ++K+E +++NM   ++A+    GN+ LHIA    
Sbjct: 50  LHRYDHHGRQCTHMVAW---YDRANAVMKIE-LLVNMGADINARELGTGNTLLHIAASTK 105

Query: 245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293
             ++ + L    GV+   IN   ETA   A K     +  IL+ +G  C
Sbjct: 106 NYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC 154

Length = 166

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
           G T L++AA  GY D V  +++ H  ++  I+  NG  A   A      ++ +IL     
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLK-HACNV-HIRDANGNTALWNAISAKHHKIFRILYH--- 612

Query: 122 ELLMTFDS-SNTTA----LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176
                F S S+  A    L TA+ +  +  +K LL++G  + +     G TAL  A    
Sbjct: 613 -----FASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH-QGATALQVAMAED 666

Query: 177 HLEIVKALLSKEPGIV---LRNDKKGQTALHMAVK---GQSIELVDELVKVEP 223
           H+++V+ L+     +      +D        +  K   G SI +VD +   EP
Sbjct: 667 HVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEP 719

Length = 823

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGI 191
           +G T LH AARNG+LE+VK LL     I
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 286
           N  D  G + LHIA   G VQ+V+ LL   G D  +++K  +T L+ AE+ G  E+  +L
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFREVVQLL 167

Query: 287 KEH 289
             H
Sbjct: 168 SRH 170

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 14/188 (7%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D +  + L T +S G+  +++ LL+       I  S G+T LH AA  G+ + V  LL  
Sbjct: 522 DPNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKH 580

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV----EPVIINMVDAKGNSALHIATRK 243
              + +R D  G TAL  A+  +  ++   L       +P             L  A ++
Sbjct: 581 ACNVHIR-DANGNTALWNAISAKHHKIFRILYHFASISDPHA-------AGDLLCTAAKR 632

Query: 244 GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANS 303
             +  +++LL   G++    +    TAL  A    H ++  +L  +G    K+      S
Sbjct: 633 NDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFS 691

Query: 304 ARELKQAV 311
             EL++ +
Sbjct: 692 PTELRELL 699

Length = 823

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 165 GKTALHSAARNGH----LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           G+  LH   RNG     L    A+  +   +VL  ++ G+  +H+       +  ++L  
Sbjct: 17  GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL 76

Query: 221 VEP--VIINMVDAK-GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKT 277
           +      IN  +   GN+ LHIA      ++   L N  GV+  ++N + +T    A + 
Sbjct: 77  LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER 136

Query: 278 GHSEIGVILKEHGVPCG 294
             +++  IL+  G  C 
Sbjct: 137 HDAKMMNILRAKGAQCK 153

Length = 154

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
           G +ALH A   GR+++V+ LL   GVD    ++   TAL  A + G+ E+
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEV 49

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA 104
           + +G T L++AA+YG +++V+ +++        ++  +G  A  +A
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPG--VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINK 265
            GN+ LH+A R G +++V+ LL   G D    +K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE-AGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 17/163 (10%)

Query: 134 ALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS------- 186
           AL  A   G +++ + LL+ G         +G + +  A +    E +K L+        
Sbjct: 5   ALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV 63

Query: 187 KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
           K P I        ++ LH AV+   ++ V+EL+ +     ++    G + LH+AT   ++
Sbjct: 64  KYPDI--------ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL 115

Query: 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
            I++ L+   G D  + N  + + L  A   G  +   +L +H
Sbjct: 116 DIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157

Length = 413

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 27/198 (13%)

Query: 75  VDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCL---EVLKILMEALPELLMTFDSSN 131
            DM+R ++     ++  +K   GY+  H+   +      +V+KIL+     L        
Sbjct: 124 CDMLRFLLS-KGINVNDVKNSRGYNLLHMYL-ESFSVKKDVIKILLSFGVNLFEKTSLYG 181

Query: 132 TTAL-----HTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
            T +     +       ++V+K+L++KG                 +     L+  K L  
Sbjct: 182 LTPMNIYLRNDIDVIS-IKVIKYLIKKG------VNIETNNNGSESVLESFLDNNKILSK 234

Query: 187 KE--------PGIVLRN-DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSAL 237
           KE          I +   DKKG   L ++ K  + E  + L+K+   I N V   G++ L
Sbjct: 235 KEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN-VSKDGDTVL 293

Query: 238 HIATRKGRVQIVQKLLNI 255
             A + G + ++ ++L +
Sbjct: 294 TYAIKHGNIDMLNRILQL 311

Length = 494

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 42  MISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY--HDTSLAGIKARN--G 97
           M S +    L EM+++ N  GE   + AA  G  D++     +   D   A + A +  G
Sbjct: 1   MESPHFMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAG 60

Query: 98  YDAFHIAA----KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
               HIAA     Q   E++  L+E   ++         TALH A+ +   ++ ++L
Sbjct: 61  QMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Length = 169

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLAT 159
           T LH A+  G++E+VK LLE G+ +  
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPG----IVLRN-DKKGQTALHMAV----KGQSIE 213
           S G+   H AAR G  +I+        G      L   D  GQ  +H+A        + E
Sbjct: 19  SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAE 78

Query: 214 LVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDT 273
           ++D L+++   I      +G++ALH+A  +    + + L    G+D    N   ++  + 
Sbjct: 79  IIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL 138

Query: 274 AEKTGHSEIGVILKE 288
           A       +  IL+E
Sbjct: 139 AIDNEDVAMMQILRE 153

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	537
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
PF13962	113	PGG: Domain of unknown function	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02741	169	hypothetical protein; Provisional	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02741	169	hypothetical protein; Provisional	99.79
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.58
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.32
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.3
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.26
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.22
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.21
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.21
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.21
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.2
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.12
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.12
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.06
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.79
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.59
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.57
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.51
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.47
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.44
PF13606	30	Ank_3: Ankyrin repeat	98.42
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.39
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.37
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.36
PF13606	30	Ank_3: Ankyrin repeat	98.32
KOG0522	560	consensus Ankyrin repeat protein [General function	98.27
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.21
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.18
KOG0522	560	consensus Ankyrin repeat protein [General function	98.08
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.07
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.93
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.89
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.84
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.79
KOG0511	516	consensus Ankyrin repeat protein [General function	97.7
KOG2384	223	consensus Major histocompatibility complex protein	97.63
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.53
KOG0511	516	consensus Ankyrin repeat protein [General function	97.44
KOG2384	223	consensus Major histocompatibility complex protein	97.4
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.0
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.79
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.51
KOG2505	591	consensus Ankyrin repeat protein [General function	95.5
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.47
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.83
KOG2505	591	consensus Ankyrin repeat protein [General function	93.52
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	91.75
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.15
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.48
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.26
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	87.01
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	85.17

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-36  Score=318.16  Aligned_cols=263  Identities=26%  Similarity=0.355  Sum_probs=232.8

Q ss_pred             ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc---------
Q 009331           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTS---------   88 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~---------   88 (537)
                      ..+..|.||||.|++.|+.++|++|++.|.+.      +..+..|.||||.|+..|+.+++++|++.|...         
T Consensus        30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~------n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~  103 (434)
T PHA02874         30 ISVDETTTPLIDAIRSGDAKIVELFIKHGADI------NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIE  103 (434)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCC
Confidence            45567899999999999999999999999764      456788999999999999999999999976432         


Q ss_pred             ------------cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCC
Q 009331           89 ------------LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST  156 (537)
Q Consensus        89 ------------~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  156 (537)
                                  +.+..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|+++|++
T Consensus       104 ~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~  182 (434)
T PHA02874        104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIKLLLEKGAY  182 (434)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHCCcHHHHHHHHHCCCC
Confidence                        34456788999999999999999999999999887654 88999999999999999999999999998


Q ss_pred             cccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcH
Q 009331          157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA  236 (537)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~  236 (537)
                      + ...+..|.||||.|+..|+.+++++|++.+++... .+..|.||||.|+..+. +.+++|+.  +..++.+|.+|+||
T Consensus       183 ~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~-~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~Tp  257 (434)
T PHA02874        183 A-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN-KCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTP  257 (434)
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCH
Confidence            7 56788999999999999999999999999988654 47899999999999875 56777774  56689999999999


Q ss_pred             HHHHHHhC-cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC-ChhHHHHHHhcCCCC
Q 009331          237 LHIATRKG-RVQIVQKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEHGVPC  293 (537)
Q Consensus       237 Lh~A~~~~-~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~-~~~i~~~L~~~ga~~  293 (537)
                      ||+|+..+ +.+++++|++ .|++++.+|..|.|||++|++.+ ..++++.|+..+...
T Consensus       258 Lh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        258 LHHAINPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI  315 (434)
T ss_pred             HHHHHhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence            99999875 7899999998 79999999999999999999987 667889999887653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-37  Score=325.39  Aligned_cols=264  Identities=23%  Similarity=0.333  Sum_probs=242.1

Q ss_pred             ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHH-----HHHcCCHHHHHHHHHhCCcccccc
Q 009331           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYV-----AAEYGYVDMVREMIRYHDTSLAGI   92 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~-----Aa~~g~~~iv~~Ll~~~~~~~~~~   92 (537)
                      ..+..+.||||.|++.|+.++|+.|++.|.++      +..+..|.||||.     |+..|+.++++.|++.|.+  .+.
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~------~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~--i~~  101 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILLDNGADI------NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN--VNA  101 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHHHcCCCC------CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC--CCC
Confidence            44578899999999999999999999999764      4557889999999     9999999999999998754  467


Q ss_pred             cCCCCChHHHHHH--HcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCC--CHHHHHHHHHcCCCcccccccCCCcH
Q 009331           93 KARNGYDAFHIAA--KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKTA  168 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tp  168 (537)
                      .+..|.||||+|+  ..|+.+++++|++.++++... +..|.||||+|+..|  +.+++++|+++|+++ ...+..|.||
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tp  179 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK-NSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTP  179 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCH
Confidence            8889999999999  999999999999999886544 889999999999999  999999999999997 5667799999


Q ss_pred             HHHHHHCCcHHHHHHHHhcCCCCcccCCCCC------ChHHHHHHhcCC--HHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331          169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKG------QTALHMAVKGQS--IELVDELVKVEPVIINMVDAKGNSALHIA  240 (537)
Q Consensus       169 L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~~~--~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A  240 (537)
                      ||.|+..|+.+++++|++++++.... +..|      .||||.|+..++  .+++++|++ .+.++|.+|..|+||||+|
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~A  257 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHYA  257 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999987654 5667      899999999999  999999999 5678899999999999999


Q ss_pred             HHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331          241 TRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG  294 (537)
Q Consensus       241 ~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~  294 (537)
                      +..|+.+++++|++ .|++++.+|..|.||+++|+..++.+++++|+++|++..
T Consensus       258 ~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        258 VYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            99999999999998 799999999999999999999999999999999998653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=303.96  Aligned_cols=265  Identities=27%  Similarity=0.356  Sum_probs=200.7

Q ss_pred             CCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCCh
Q 009331           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (537)
Q Consensus        20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (537)
                      +.++.+|+|.|+..|+.+.++.|++.+.+.      +..++.|.||||+||..++.|..+.|++.+  .++...|.+|+.
T Consensus       118 n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv------nl~de~~~TpLh~A~~~~~~E~~k~Li~~~--a~~~K~~~~~~~  189 (929)
T KOG0510|consen  118 NLNKNAPLHLAADSGNYSCLKLLLDYGADV------NLEDENGFTPLHLAARKNKVEAKKELINKG--ADPCKSDIDGNF  189 (929)
T ss_pred             hhhccCchhhccccchHHHHHHHHHhcCCc------cccccCCCchhhHHHhcChHHHHHHHHhcC--CCCCcccCcCCc
Confidence            344444444444444444444444444332      333555666666666666666555556554  334445556666


Q ss_pred             HHHHHHHcCCHHHHHHHHH-----hCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccc--------------c
Q 009331          100 AFHIAAKQGCLEVLKILME-----ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT--------------I  160 (537)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~-----~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~--------------~  160 (537)
                      |+|.|+++|..++.+.++.     +...++ ..|..+.||||.|+..|+.++++.+|+.++....              .
T Consensus       190 ~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  190 PIHEAARSGSKECMEIFLPEHGYERQTHIN-FDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVND  268 (929)
T ss_pred             hHHHHHHhcchhhhhhhhccccchhhcccc-cccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhc
Confidence            6666666666666666665     222222 2377888999999999999999999998765532              2


Q ss_pred             cccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHh-cCCcccccccCCCCcHHHH
Q 009331          161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK-VEPVIINMVDAKGNSALHI  239 (537)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~~~~~~n~~d~~G~T~Lh~  239 (537)
                      .|.+|.||||+|++.|+.+.++.|+..|.+.... +.++.||||.|+..|+.+.++.|++ .+..++|..|..|+||||+
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHl  347 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASINSK-NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHL  347 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhh
Confidence            4788999999999999999999999999997655 7999999999999999999999999 6677899999999999999


Q ss_pred             HHHhCcHHHHHHHhhhcCCCcc---cccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCC
Q 009331          240 ATRKGRVQIVQKLLNINGVDKA---VINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  295 (537)
Q Consensus       240 A~~~~~~~iv~~Ll~~~g~~~~---~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~  295 (537)
                      |++.|+.++++.|++ .|+...   ..|.+|+||||.|+..|+...++.|+.+|++...
T Consensus       348 aa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  348 AAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             hhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            999999999999999 677665   4599999999999999999999999999999844

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.2e-36  Score=316.38  Aligned_cols=264  Identities=18%  Similarity=0.241  Sum_probs=236.2

Q ss_pred             hccCCCCCChHHHHHHcC---CHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcC-CHHHHHHHHHhCCcccccc
Q 009331           17 QLTAKRDDTPLQSLVRTG---SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG-YVDMVREMIRYHDTSLAGI   92 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g-~~~iv~~Ll~~~~~~~~~~   92 (537)
                      ...+..|.||||.|+..|   +.++++.|++.|.+.      +.++..|.||||+|+..| +.++++.|++.|.  +.+.
T Consensus        41 n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi------n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga--~in~  112 (471)
T PHA03095         41 NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV------NAPERCGFTPLHLYLYNATTLDVIKLLIKAGA--DVNA  112 (471)
T ss_pred             ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC--CCCC
Confidence            456778999999999999   999999999999774      566789999999999999 5999999999874  4667


Q ss_pred             cCCCCChHHHHHH--HcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCC--CHHHHHHHHHcCCCcccccccCCCcH
Q 009331           93 KARNGYDAFHIAA--KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKTA  168 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tp  168 (537)
                      .+..|.||||+|+  ..++.+++++|++.++++... |..|.||||+|+..+  +.+++++|+++|+++... |..|.||
T Consensus       113 ~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~-d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~  190 (471)
T PHA03095        113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSL  190 (471)
T ss_pred             CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCH
Confidence            8889999999999  566899999999999987654 889999999998876  689999999999998554 8899999


Q ss_pred             HHHHHHC--CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH--HHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          169 LHSAARN--GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI--ELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       169 L~~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      ||.|+..  ++.++++.|++.+.++.. .|..|.||||+|+..|+.  .+++.|++ .+.++|.+|.+|+||||+|+..|
T Consensus       191 Lh~~~~~~~~~~~i~~~Ll~~g~~~~~-~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~  268 (471)
T PHA03095        191 LHHHLQSFKPRARIVRELIRAGCDPAA-TDMLGNTPLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFN  268 (471)
T ss_pred             HHHHHHHCCCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC
Confidence            9999864  788999999999998654 589999999999998875  57778887 67789999999999999999999


Q ss_pred             cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       245 ~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      +.+++++|++ .|++++.+|.+|.|||++|+..++.++++.|++.+++.
T Consensus       269 ~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        269 NPRACRRLIA-LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             CHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            9999999998 79999999999999999999999999999999988764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-35  Score=305.15  Aligned_cols=265  Identities=22%  Similarity=0.248  Sum_probs=230.5

Q ss_pred             ChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHH
Q 009331           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (537)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (537)
                      ..|+.|+..|+++.++.|++.++.     .++..+..|.||||.|++.|+.++|++|++.|.  +.+..+..|.||||.|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~-----~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga--~~n~~~~~~~t~L~~A   75 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN-----CINISVDETTTPLIDAIRSGDAKIVELFIKHGA--DINHINTKIPHPLLTA   75 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHH
Confidence            368999999999999999987653     234567889999999999999999999999874  4556788899999999


Q ss_pred             HHcCCHHHHHHHHHhCChh----------------------hhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccc
Q 009331          105 AKQGCLEVLKILMEALPEL----------------------LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR  162 (537)
Q Consensus       105 a~~g~~~iv~~Ll~~~~~~----------------------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (537)
                      +..|+.+++++|++.+.+.                      ....|..|.||||+|+..|+.+++++|+++|+++ ...|
T Consensus        76 ~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d  154 (434)
T PHA02874         76 IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIED  154 (434)
T ss_pred             HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcC
Confidence            9999999999999987542                      2234778999999999999999999999999997 5678


Q ss_pred             cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH
Q 009331          163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (537)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~  242 (537)
                      .+|.||||+|+..|+.+++++|++.+++... .+..|.||||.|+..|+.+++++|++ .+..++.++..|.||||+|+.
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~-~~~~g~tpL~~A~~~g~~~iv~~Ll~-~g~~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANV-KDNNGESPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCcCCCCCCCCHHHHHHH
Confidence            9999999999999999999999999988654 47899999999999999999999999 556678999999999999999


Q ss_pred             hCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC-ChhHHHHHHhcCCCCCCCCCCccc
Q 009331          243 KGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEHGVPCGKSIKPQAN  302 (537)
Q Consensus       243 ~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~-~~~i~~~L~~~ga~~~~~~~~~~~  302 (537)
                      .+. +.+.+|+.  |++++.+|..|.||||+|+..+ +.+++++|+++|++.......+..
T Consensus       233 ~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~T  290 (434)
T PHA02874        233 HNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGEN  290 (434)
T ss_pred             CCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCC
Confidence            876 56667764  7899999999999999999875 789999999999997655444433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.8e-35  Score=315.75  Aligned_cols=263  Identities=17%  Similarity=0.158  Sum_probs=221.4

Q ss_pred             CCCCCChHHHHHH--cCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCC--HHHHHHHHHhCCcccccccCC
Q 009331           20 AKRDDTPLQSLVR--TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY--VDMVREMIRYHDTSLAGIKAR   95 (537)
Q Consensus        20 ~~~~~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~~   95 (537)
                      +..|.||||.|+.  .++.+++++|++.|.+.      +.+|..|.||||+|+..|+  .++|+.|++.|+  +.+.++.
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV------N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA--DVN~kD~  245 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNV------NLQNNHLITPLHTYLITGNVCASVIKKIIELGG--DMDMKCV  245 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC--CCCCCCC
Confidence            6789999999875  46899999999999764      5678999999999999995  599999999884  5667889


Q ss_pred             CCChHHHHH-------------------------------------HHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           96 NGYDAFHIA-------------------------------------AKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        96 ~g~t~Lh~A-------------------------------------a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      .|.||||.|                                     +..|+.+++++|++.++++.. .|..|+||||+|
T Consensus       246 ~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~-kD~~G~TPLH~A  324 (764)
T PHA02716        246 NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHY-KDSAGRTCLHQY  324 (764)
T ss_pred             CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceec-cCCCCCCHHHHH
Confidence            999999965                                     445788999999999988664 489999999998


Q ss_pred             Hh--CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH--------------CCcHHHHHHHHhcCCCCcccCCCCCChH
Q 009331          139 SS--QGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR--------------NGHLEIVKALLSKEPGIVLRNDKKGQTA  202 (537)
Q Consensus       139 ~~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--------------~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  202 (537)
                      +.  .++.+++++|+++|+++ +..|..|.||||.|+.              .++.+++++|+++|+++.. .|..|.||
T Consensus       325 aa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~-kn~~G~TP  402 (764)
T PHA02716        325 ILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA-VNCLGYTP  402 (764)
T ss_pred             HHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC-cCCCCCCh
Confidence            74  46899999999999997 6689999999999875              3789999999999998654 58999999


Q ss_pred             HHH----HHhcCCHHHHHHHHhcCC-------------------------------------------------------
Q 009331          203 LHM----AVKGQSIELVDELVKVEP-------------------------------------------------------  223 (537)
Q Consensus       203 Lh~----A~~~~~~~~v~~Ll~~~~-------------------------------------------------------  223 (537)
                      ||.    |...+..+++++|++.+.                                                       
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~  482 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHC  482 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHH
Confidence            994    233567888888876321                                                       


Q ss_pred             -----cccccccCCCCcHHHHHHHhCcH-----HHHHHHhhhcCCCcccccCCCCCHHHHHHHcCCh-----hHHHHHHh
Q 009331          224 -----VIINMVDAKGNSALHIATRKGRV-----QIVQKLLNINGVDKAVINKSRETALDTAEKTGHS-----EIGVILKE  288 (537)
Q Consensus       224 -----~~~n~~d~~G~T~Lh~A~~~~~~-----~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~-----~i~~~L~~  288 (537)
                           ..+|..|..|+||||+|+..|+.     +++++|++ .|++++.+|++|+|||++|+..|+.     +++++|++
T Consensus       483 ~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~  561 (764)
T PHA02716        483 AIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILD  561 (764)
T ss_pred             HHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHh
Confidence                 01245678899999999999876     55699998 7999999999999999999999976     99999999


Q ss_pred             cCCCCC
Q 009331          289 HGVPCG  294 (537)
Q Consensus       289 ~ga~~~  294 (537)
                      +|+...
T Consensus       562 ~ga~~~  567 (764)
T PHA02716        562 KRPNVD  567 (764)
T ss_pred             cCCCcc
Confidence            998753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.4e-35  Score=283.64  Aligned_cols=237  Identities=21%  Similarity=0.215  Sum_probs=207.2

Q ss_pred             cCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHH
Q 009331           33 TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEV  112 (537)
Q Consensus        33 ~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~i  112 (537)
                      .++.++++.|++++..        ..|.+|.||||+|+..|+.++++.|++.+...  +.  .+|.||||+|+..|+.++
T Consensus         9 ~~~~~~~~~Lis~~a~--------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~--n~--~d~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--------KADVHGHSALYYAIADNNVRLVCTLLNAGALK--NL--LENEFPLHQAATLEDTKI   76 (284)
T ss_pred             cCHHHHHHHHHhCCCC--------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC--cC--CCCCCHHHHHHHCCCHHH
Confidence            5788999999998753        46889999999999999999999999987533  22  347899999999999999


Q ss_pred             HHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCC-CcHHHHHHHCCcHHHHHHHHhcCCCC
Q 009331          113 LKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG-KTALHSAARNGHLEIVKALLSKEPGI  191 (537)
Q Consensus       113 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~  191 (537)
                      +++|++.+.++.. .|..|+||||+|+..|+.+++++|+++|+++ ...+..| .||||+|+..|+.+++++|++++++.
T Consensus        77 V~lLL~~Gadvn~-~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~  154 (284)
T PHA02791         77 VKILLFSGMDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  154 (284)
T ss_pred             HHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            9999999987654 4889999999999999999999999999987 4456666 58999999999999999999987754


Q ss_pred             cccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcH-HHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCH
Q 009331          192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA-LHIATRKGRVQIVQKLLNINGVDKAVINKSRETA  270 (537)
Q Consensus       192 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~  270 (537)
                      ...  ..|.||||+|+.+|+.+++++|++ .+.++|.+|..|.|| ||+|+..|+.+++++|++ +|++++.+|..| ++
T Consensus       155 ~d~--~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~-~~  229 (284)
T PHA02791        155 FDL--AILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN-VL  229 (284)
T ss_pred             ccc--ccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC-cc
Confidence            311  358999999999999999999999 566789999999987 999999999999999998 799999999955 55


Q ss_pred             HHHHHHcCChhHHHHHHhcCCCCC
Q 009331          271 LDTAEKTGHSEIGVILKEHGVPCG  294 (537)
Q Consensus       271 L~~A~~~~~~~i~~~L~~~ga~~~  294 (537)
                      |      ++.|++++|+++.++..
T Consensus       230 l------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        230 L------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             C------CCHHHHHHHHHhhhhhc
Confidence            5      78899999999987754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.5e-34  Score=300.02  Aligned_cols=218  Identities=14%  Similarity=0.191  Sum_probs=97.5

Q ss_pred             CChHHHHHH--cCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHH
Q 009331           24 DTPLQSLVR--TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (537)
Q Consensus        24 ~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (537)
                      .++||.++.  .++.++++.|++.+.+.      +.+|..|.||||+|+..|+.++|+.|+++|  .+.+.+|.+|.|||
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv------n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~TpL  109 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSP------NETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTPL  109 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCC------CccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHH
Confidence            344444332  22344455555544432      233444555555555555555555555543  22333444455555


Q ss_pred             HHHHHcC--CHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC--c
Q 009331          102 HIAAKQG--CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG--H  177 (537)
Q Consensus       102 h~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~  177 (537)
                      |+|+..+  ..+++++|+++++++....|..|.|||| |+..|+.+++++|++.|+++ ...|..|.||||.|+..+  +
T Consensus       110 h~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~  187 (446)
T PHA02946        110 YYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPK  187 (446)
T ss_pred             HHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCC
Confidence            5544433  2444555555544444333444445544 33334444455554444443 334444444444444322  2


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC--CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCc-HHHHHHHhh
Q 009331          178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ--SIELVDELVKVEPVIINMVDAKGNSALHIATRKGR-VQIVQKLLN  254 (537)
Q Consensus       178 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~-~~iv~~Ll~  254 (537)
                      .+++++|++.+.++.. .|..|.||||+|+.++  +.+++++|+.  +.++|.+|.+|+||||+|+..++ .+++++|++
T Consensus       188 ~~~v~~Ll~~Gadin~-~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~  264 (446)
T PHA02946        188 ASTISWMMKLGISPSK-PDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLS  264 (446)
T ss_pred             HHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHh
Confidence            3444444444444322 2444444444444433  3444444442  23444444444444444444444 244444444

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-34  Score=299.24  Aligned_cols=260  Identities=18%  Similarity=0.250  Sum_probs=219.9

Q ss_pred             hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCC--HHHHHHHHHhCCccccccc
Q 009331           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY--VDMVREMIRYHDTSLAGIK   93 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~--~~iv~~Ll~~~~~~~~~~~   93 (537)
                      .+.+|.+|.||||+|++.|+.++++.|+++|++.      +.+|..|.||||+|+..++  .++++.|++.|.+.. ...
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi------n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin-~~~  137 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLLTHGADP------NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN-NSV  137 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC------CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc-ccc
Confidence            3567889999999999999999999999999764      5578999999999998764  899999999885432 135


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCC--CHHHHHHHHHcCCCcccccccCCCcHHHH
Q 009331           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKTALHS  171 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  171 (537)
                      +..|.|||| |+..|+.+++++|++.+.+... .|..|+||||+|+..+  +.+++++|++.|+++ ...|.+|.||||+
T Consensus       138 d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~-~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~  214 (446)
T PHA02946        138 DEEGCGPLL-ACTDPSERVFKKIMSIGFEARI-VDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHI  214 (446)
T ss_pred             CCCCCcHHH-HHHCCChHHHHHHHhccccccc-cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence            788999998 6677999999999999887654 4899999999998755  479999999999998 6778999999999


Q ss_pred             HHHCC--cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCC-HHHHHHHHhcCCcc-------------------cccc
Q 009331          172 AARNG--HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-IELVDELVKVEPVI-------------------INMV  229 (537)
Q Consensus       172 A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~-------------------~n~~  229 (537)
                      |+..|  +.++++.|++ +.++ +..|..|.||||+|++.++ .++++.|+..+...                   ++..
T Consensus       215 Aa~~~~~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~  292 (446)
T PHA02946        215 VCSKTVKNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDK  292 (446)
T ss_pred             HHHcCCCcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHc
Confidence            99986  7899999885 6664 4568999999999999988 48999999854321                   2222


Q ss_pred             c-CCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCC
Q 009331          230 D-AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  295 (537)
Q Consensus       230 d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~  295 (537)
                      + ..|+||||+|+..|+.+++++|++ .|       ..|+|||++|+..++.+++++|+.+|++...
T Consensus       293 g~~~~~TpLh~Aa~~g~~eivk~Ll~-~~-------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~  351 (446)
T PHA02946        293 GKQYDSTDFKMAVEVGSIRCVKYLLD-ND-------IICEDAMYYAVLSEYETMVDYLLFNHFSVDS  351 (446)
T ss_pred             CcccCCCHHHHHHHcCCHHHHHHHHH-CC-------CccccHHHHHHHhCHHHHHHHHHHCCCCCCC
Confidence            2 457899999999999999999998 44       2579999999999999999999999999765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-34  Score=315.21  Aligned_cols=272  Identities=19%  Similarity=0.200  Sum_probs=229.7

Q ss_pred             ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCc----------
Q 009331           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT----------   87 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~----------   87 (537)
                      ..|..|.||||+|++.|+.++|+.|++.|.+.      +..+..|.||||.|+..|+.++++.|++.+..          
T Consensus       173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~------n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~  246 (682)
T PHA02876        173 AKDIYCITPIHYAAERGNAKMVNLLLSYGADV------NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLK  246 (682)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc------CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHH
Confidence            46778999999999999999999999998764      34577889999999999999999888775432          


Q ss_pred             -----------------ccccccCCCCChHHHHHHHcCCH-HHHHHHHHhCChhhhcCCCCCChHHHHHHhCC-CHHHHH
Q 009331           88 -----------------SLAGIKARNGYDAFHIAAKQGCL-EVLKILMEALPELLMTFDSSNTTALHTASSQG-HVEVVK  148 (537)
Q Consensus        88 -----------------~~~~~~~~~g~t~Lh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~iv~  148 (537)
                                       .+.+..+..|.||||+|+..|+. +++++|++.+.++.. .|..|.||||+|+..| +.++++
T Consensus       247 ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~-~d~~g~TpLh~Aa~~g~~~~~v~  325 (682)
T PHA02876        247 AIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA-KNIKGETPLYLMAKNGYDTENIR  325 (682)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCCHHHHH
Confidence                             12344566799999999999986 588999998887654 4889999999999998 589999


Q ss_pred             HHHHcCCCcccccccCCCcHHHHHHHC-CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccc
Q 009331          149 FLLEKGSTLATIARSNGKTALHSAARN-GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN  227 (537)
Q Consensus       149 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~-g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n  227 (537)
                      .|+..|+++ ...|..|.||||+|+.. ++.++++.|++.+.++.. .|..|.||||+|+..|+.+++++|++ .+.+++
T Consensus       326 ~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~-~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~  402 (682)
T PHA02876        326 TLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNA-RDYCDKTPIHYAAVRNNVVIINTLLD-YGADIE  402 (682)
T ss_pred             HHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcc
Confidence            999999987 56788999999999885 578899999999888654 48899999999999999999999998 566788


Q ss_pred             cccCCCCcHHHHHHHhCc-HHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC-ChhHHHHHHhcCCCCCCCCCCc
Q 009331          228 MVDAKGNSALHIATRKGR-VQIVQKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEHGVPCGKSIKPQ  300 (537)
Q Consensus       228 ~~d~~G~T~Lh~A~~~~~-~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~-~~~i~~~L~~~ga~~~~~~~~~  300 (537)
                      ..+..|.||||+|+..++ ..++++|++ .|++++.+|..|.||||+|+..+ +.+++++|+++|+++......+
T Consensus       403 ~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g  476 (682)
T PHA02876        403 ALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQN  476 (682)
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCC
Confidence            999999999999998765 466888887 79999999999999999999876 6799999999999876554433

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=298.38  Aligned_cols=243  Identities=18%  Similarity=0.250  Sum_probs=218.4

Q ss_pred             CCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHH
Q 009331           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (537)
Q Consensus        23 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (537)
                      ++++||.|++.|+.++++.|++.|.++      +..+..|.||||+|+..|+.+++++|++.|..  .+..+..+.||||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~------n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~~t~L~   73 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP------NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI--PDVKYPDIESELH   73 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC------CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCcccHHH
Confidence            578999999999999999999999765      34567899999999999999999999998753  4456678999999


Q ss_pred             HHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHH
Q 009331          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (537)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~  182 (537)
                      .|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|+++ ...+.+|.||||.|+..|+.++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999998776666788999999999999999999999999997 667889999999999999999999


Q ss_pred             HHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC-cHHHHHHHhCcHHHHHHHhhhcCCCcc
Q 009331          183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN-SALHIATRKGRVQIVQKLLNINGVDKA  261 (537)
Q Consensus       183 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~-T~Lh~A~~~~~~~iv~~Ll~~~g~~~~  261 (537)
                      +|++++++.. ..|..|.||||+|+..|+.+++++|++ .+.+++..+..|. ||+|+|+..|+.+++++|++ .|+|++
T Consensus       153 ~Ll~~g~~~~-~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~n  229 (413)
T PHA02875        153 LLIDHKACLD-IEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK-RGADCN  229 (413)
T ss_pred             HHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCcc
Confidence            9999998865 458999999999999999999999999 5667888888774 89999999999999999999 799998


Q ss_pred             cc---cCCCCCHHHHHHHc
Q 009331          262 VI---NKSRETALDTAEKT  277 (537)
Q Consensus       262 ~~---~~~g~t~L~~A~~~  277 (537)
                      ..   +..+.||++.+...
T Consensus       230 ~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        230 IMFMIEGEECTILDMICNM  248 (413)
T ss_pred             hHhhcCCCchHHHHHHHhh
Confidence            75   66788999987754

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=304.15  Aligned_cols=253  Identities=24%  Similarity=0.284  Sum_probs=199.7

Q ss_pred             CCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCCh
Q 009331           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (537)
Q Consensus        20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (537)
                      +..+.||||.|++.|+.++|+.|++.|.+.      +.++..|.||||+||..|+.++++.|++.+.....    ..+.+
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~  103 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNV------NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLV  103 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchh
Confidence            346789999999999999999999998764      56789999999999999999999999997633222    46789


Q ss_pred             HHHHHHHcCCHHHHHHHHHh---------------------------------CChhhhcCCCC-CChHHHHHHhCCCHH
Q 009331          100 AFHIAAKQGCLEVLKILMEA---------------------------------LPELLMTFDSS-NTTALHTASSQGHVE  145 (537)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~---------------------------------~~~~~~~~d~~-g~tpLh~A~~~g~~~  145 (537)
                      |++.|+..|+.++++.|+..                                 ++++... +.. |.||||+|+..|+.+
T Consensus       104 ~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~-~~~~g~tpLh~A~~~~~~~  182 (477)
T PHA02878        104 AIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMK-DRHKGNTALHYATENKDQR  182 (477)
T ss_pred             hHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCcc-CCCCCCCHHHHHHhCCCHH
Confidence            99999999887776666654                                 3333322 455 888888888888888


Q ss_pred             HHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhc-CCHHHHHHHHhcCCc
Q 009331          146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG-QSIELVDELVKVEPV  224 (537)
Q Consensus       146 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~~~~v~~Ll~~~~~  224 (537)
                      ++++|++.|+++ ...|..|.||||.|+..|+.++++.|++.+++... .|..|.||||+|+.. ++.+++++|++ .+.
T Consensus       183 iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~-~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~ga  259 (477)
T PHA02878        183 LTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA-RDKCGNTPLHISVGYCKDYDILKLLLE-HGV  259 (477)
T ss_pred             HHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHhcCCHHHHHHHHH-cCC
Confidence            888888888876 56677888888888888888888888888887654 477888888888864 67888888888 456


Q ss_pred             ccccccC-CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC-ChhHHHHHHhc
Q 009331          225 IINMVDA-KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEH  289 (537)
Q Consensus       225 ~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~-~~~i~~~L~~~  289 (537)
                      ++|.++. .|+||||+|  .++.+++++|++ .|+|++..|..|.|||++|+..+ ..++.++|+..
T Consensus       260 dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~-~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        260 DVNAKSYILGLTALHSS--IKSERKLKLLLE-YGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCccCCCCCCCHHHHH--ccCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            6777775 688888888  466788888887 68888888888888888888653 34666666554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.9e-35  Score=297.75  Aligned_cols=253  Identities=28%  Similarity=0.394  Sum_probs=226.4

Q ss_pred             HHhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhC---Cccc
Q 009331           13 KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYH---DTSL   89 (537)
Q Consensus        13 ~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~---~~~~   89 (537)
                      +...++.|+++.||||.||+.++.|..+.|++.+.++      .+.|.+|++|+|.|+++|..++.+..+++.   ....
T Consensus       144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~------~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~  217 (929)
T KOG0510|consen  144 GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP------CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH  217 (929)
T ss_pred             cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC------CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc
Confidence            3567888999999999999999999889999999875      567899999999999999999999999832   2345


Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHhCCh--------------hhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCC
Q 009331           90 AGIKARNGYDAFHIAAKQGCLEVLKILMEALPE--------------LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS  155 (537)
Q Consensus        90 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~--------------~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  155 (537)
                      .+..+..|.+|||.|+..|++++++.+|+.+..              +.+..|.+|.||||+||+.|+.+.++.|+..|+
T Consensus       218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga  297 (929)
T KOG0510|consen  218 INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA  297 (929)
T ss_pred             cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence            667788999999999999999999999987653              244568999999999999999999999999999


Q ss_pred             CcccccccCCCcHHHHHHHCCcHHHHHHHHh-cCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccc--cccCC
Q 009331          156 TLATIARSNGKTALHSAARNGHLEIVKALLS-KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN--MVDAK  232 (537)
Q Consensus       156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n--~~d~~  232 (537)
                      ++ +.++.++.||||.|++.|+++.++.|++ .+--..+..|..|.||||.|+++|+..+++.|++++....+  ..|.+
T Consensus       298 ~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~d  376 (929)
T KOG0510|consen  298 SI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSD  376 (929)
T ss_pred             cc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccC
Confidence            98 6678999999999999999999999999 55556667789999999999999999999999997665555  55999


Q ss_pred             CCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHH
Q 009331          233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDT  273 (537)
Q Consensus       233 G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~  273 (537)
                      |+||||+|+..|+..+++.|+. +|+++..+|+.|.+++++
T Consensus       377 g~TaLH~Aa~~g~~~av~~Li~-~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  377 GNTALHLAAKYGNTSAVQKLIS-HGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             CchhhhHHHHhccHHHHHHHHH-cCCceeeccccccccccc
Confidence            9999999999999999999999 799999999999999996

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4e-34  Score=314.96  Aligned_cols=267  Identities=16%  Similarity=0.199  Sum_probs=223.5

Q ss_pred             CCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHH-----------------------------
Q 009331           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAA-----------------------------   70 (537)
Q Consensus        20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa-----------------------------   70 (537)
                      +..+.||||+|+..|+.|+|+.|++..+.     ++...|..|.||||+|+                             
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~-----~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  112 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPE-----LIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIIL  112 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcc-----cchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHH
Confidence            45689999999999999999999999764     34566788888998665                             


Q ss_pred             -----------------------------------------HcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCC
Q 009331           71 -----------------------------------------EYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGC  109 (537)
Q Consensus        71 -----------------------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~  109 (537)
                                                               ..|+.+++++|++.|.  +.+.+|..|.||||+|+..|+
T Consensus       113 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Ga--dvn~~d~~G~TpLh~Aa~~G~  190 (682)
T PHA02876        113 NKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGA--DVNAKDIYCITPIHYAAERGN  190 (682)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCC--CCCCCCCCCCCHHHHHHHCCC
Confidence                                                     5577889999998874  456678899999999999999


Q ss_pred             HHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcc----------------------------ccc
Q 009331          110 LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA----------------------------TIA  161 (537)
Q Consensus       110 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~----------------------------~~~  161 (537)
                      .+++++|++.|++.... +..|.||||+|+..|+.+++++|++.+.+..                            ...
T Consensus       191 ~~iv~~LL~~Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~  269 (682)
T PHA02876        191 AKMVNLLLSYGADVNII-ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSI  269 (682)
T ss_pred             HHHHHHHHHCCCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            99999999999886544 7888999999999998888887776554321                            234


Q ss_pred             ccCCCcHHHHHHHCCcH-HHHHHHHhcCCCCcccCCCCCChHHHHHHhcC-CHHHHHHHHhcCCcccccccCCCCcHHHH
Q 009331          162 RSNGKTALHSAARNGHL-EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ-SIELVDELVKVEPVIINMVDAKGNSALHI  239 (537)
Q Consensus       162 ~~~g~tpL~~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~  239 (537)
                      +..|.||||+|+..|+. ++++.|++.+.++.. .|..|.||||+|+.+| ..++++.|+. .+.+++..|..|+||||+
T Consensus       270 d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~-~d~~g~TpLh~Aa~~g~~~~~v~~Ll~-~gadin~~d~~g~TpLh~  347 (682)
T PHA02876        270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNA-KNIKGETPLYLMAKNGYDTENIRTLIM-LGADVNAADRLYITPLHQ  347 (682)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCCHHHHHHHHH-cCCCCCCcccCCCcHHHH
Confidence            66799999999999986 588999999888654 4788999999999988 5889999888 567789999999999999


Q ss_pred             HHHh-CcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 009331          240 ATRK-GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI  297 (537)
Q Consensus       240 A~~~-~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~  297 (537)
                      |+.. +..++++.|++ .|++++.+|..|.||||+|+..++.+++++|+++|++.....
T Consensus       348 A~~~~~~~~iv~lLl~-~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        348 ASTLDRNKDIVITLLE-LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             HHHhCCcHHHHHHHHH-cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence            9986 46788888887 799999999999999999999999999999999998875543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-33  Score=296.22  Aligned_cols=260  Identities=21%  Similarity=0.264  Sum_probs=231.5

Q ss_pred             HHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcC---CHHHHHHHHHhCCcccccccCCCCChHHHHH
Q 009331           28 QSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG---YVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (537)
Q Consensus        28 h~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (537)
                      ..++..++.++++.|++.|.+.      +..+..|.||||+|+..|   +.++++.|++.|.  +.+..+..|.||||+|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~v------n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga--din~~~~~g~TpLh~A   90 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADV------NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA--DVNAPERCGFTPLHLY   90 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCc------ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC--CCCCCCCCCCCHHHHH
Confidence            5677889999999999999763      566889999999999999   9999999999874  5666788999999999


Q ss_pred             HHcC-CHHHHHHHHHhCChhhhcCCCCCChHHHHHH--hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC--cHH
Q 009331          105 AKQG-CLEVLKILMEALPELLMTFDSSNTTALHTAS--SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLE  179 (537)
Q Consensus       105 a~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~  179 (537)
                      +..| +.+++++|++.+.++... |..|.||||+|+  ..++.+++++|++.|+++ ...|..|.||||.|+..+  +.+
T Consensus        91 ~~~~~~~~iv~lLl~~ga~in~~-~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~  168 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGADVNAK-DKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVE  168 (471)
T ss_pred             HHcCCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHH
Confidence            9999 599999999999987654 889999999999  566899999999999997 667899999999998866  689


Q ss_pred             HHHHHHhcCCCCcccCCCCCChHHHHHHhc--CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcH--HHHHHHhhh
Q 009331          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKG--QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QIVQKLLNI  255 (537)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~--~iv~~Ll~~  255 (537)
                      +++.|++.+++.... |..|.||||.|+..  +..++++.|++ .+.+++.+|..|+||||+|+..++.  .+++.|++ 
T Consensus       169 iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~-~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-  245 (471)
T PHA03095        169 LLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIR-AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI-  245 (471)
T ss_pred             HHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH-
Confidence            999999999998776 89999999999874  78899999999 5778999999999999999999874  57778887 


Q ss_pred             cCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCCc
Q 009331          256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ  300 (537)
Q Consensus       256 ~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~  300 (537)
                      .|++++.+|..|.||||+|+..|+.+++++|+++|+++......+
T Consensus       246 ~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g  290 (471)
T PHA03095        246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG  290 (471)
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            799999999999999999999999999999999999986554433

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-33  Score=289.08  Aligned_cols=228  Identities=24%  Similarity=0.313  Sum_probs=208.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhC
Q 009331           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (537)
Q Consensus        62 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (537)
                      .+++||.|+..|+.+++++|++.|.  +.+..+..|.||||+|+..|+.+++++|++.+..... .+..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~--~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI--NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV-KYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCcccHHHHHHHC
Confidence            4689999999999999999999874  4556778899999999999999999999999987543 367899999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 009331          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (537)
Q Consensus       142 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  221 (537)
                      |+.+++++|++.|.......+.+|.||||+|+..|+.+++++|++.|+++.. .+..|.||||.|+..|+.+++++|++ 
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~-~~~~g~tpLh~A~~~~~~~~v~~Ll~-  156 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI-PNTDKFSPLHLAVMMGDIKGIELLID-  156 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHh-
Confidence            9999999999999887667778899999999999999999999999998754 47899999999999999999999999 


Q ss_pred             CCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCC-CHHHHHHHcCChhHHHHHHhcCCCCCC
Q 009331          222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRE-TALDTAEKTGHSEIGVILKEHGVPCGK  295 (537)
Q Consensus       222 ~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~-t~L~~A~~~~~~~i~~~L~~~ga~~~~  295 (537)
                      .+..++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||+++|+..++.+++++|+++|+++..
T Consensus       157 ~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        157 HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            566789999999999999999999999999999 7999999998875 889999999999999999999998753

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=291.63  Aligned_cols=258  Identities=20%  Similarity=0.225  Sum_probs=221.5

Q ss_pred             CCCCChHHHHHHcC--CHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcC------CHHHHHHHHHhCCcccccc
Q 009331           21 KRDDTPLQSLVRTG--SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG------YVDMVREMIRYHDTSLAGI   92 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g------~~~iv~~Ll~~~~~~~~~~   92 (537)
                      .+|.||||.++..+  +.++|+.|++.|++.+      ..+ .+.||||.|+.++      +.++|+.|++.|.  +.+.
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn------~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Ga--din~  103 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVN------YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGA--DINL  103 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCcc------CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCC--CCCC
Confidence            45889998766543  6899999999998753      233 5789999998764      5789999999884  4667


Q ss_pred             cCCCCChHHHHHHHc---CCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhC--CCHHHHHHHHHcCCCcccccccCCCc
Q 009331           93 KARNGYDAFHIAAKQ---GCLEVLKILMEALPELLMTFDSSNTTALHTASSQ--GHVEVVKFLLEKGSTLATIARSNGKT  167 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~g~t  167 (537)
                      ++..|.||||.|+..   |+.+++++|+++|+++....|..|.||||+|+..  ++.+++++|+++|+++....+..|.|
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~t  183 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLT  183 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCC
Confidence            889999999988765   6899999999999998555689999999998764  68999999999999985546788999


Q ss_pred             HHHHHHHCC----cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhc------CCHHHHHHHHhcCCcccccccCCCCcHH
Q 009331          168 ALHSAARNG----HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG------QSIELVDELVKVEPVIINMVDAKGNSAL  237 (537)
Q Consensus       168 pL~~A~~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~------~~~~~v~~Ll~~~~~~~n~~d~~G~T~L  237 (537)
                      |||.|+..+    +.+++++|+++|.++.. .|..|.|+||.++..      +..+++++|+.  +.++|.+|.+|+|||
T Consensus       184 pL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~-~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL  260 (494)
T PHA02989        184 PMNIYLRNDIDVISIKVIKYLIKKGVNIET-NNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPL  260 (494)
T ss_pred             hHHHHHhcccccccHHHHHHHHhCCCCccc-cCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHH
Confidence            999998764    89999999999998654 467899999987764      35678888776  378999999999999


Q ss_pred             HHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331          238 HIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV  291 (537)
Q Consensus       238 h~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga  291 (537)
                      |+|+..++.+++++|++ .|+|++.+|..|.|||++|+..++.++++.|++.+.
T Consensus       261 ~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        261 LISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999999 799999999999999999999999999999998764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-34  Score=241.42  Aligned_cols=175  Identities=33%  Similarity=0.416  Sum_probs=94.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHH
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      +|+||||+||..|+.+++++|+....-..+..|..||||||.||+.|+.++|+.|+.+ |+++ +..+..|.|+||+|+.
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAag  115 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAG  115 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhc
Confidence            4444444444444444444444311111222244455555555555555555555555 4443 3344445555555555


Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +|..+|+++|+++++.+ ...|..|.||||.|+.-|+.+++++|+.. +..+|.+|+.|+||||.|...|+.++..+|++
T Consensus       116 K~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~-~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  116 KGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQ-GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             CChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhc-CCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence            55555555555555332 23355556666666666666666666653 34566777777777777766667777666666


Q ss_pred             hcCCCcccccCCCCCHHHHHH
Q 009331          255 INGVDKAVINKSRETALDTAE  275 (537)
Q Consensus       255 ~~g~~~~~~~~~g~t~L~~A~  275 (537)
                       .|++++..|+.| ||+..|+
T Consensus       194 -~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  194 -AGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             -hccceeeccccC-chHHHHH
Confidence             567777777766 7766554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-33  Score=238.20  Aligned_cols=212  Identities=28%  Similarity=0.384  Sum_probs=186.3

Q ss_pred             CCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHH
Q 009331           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (537)
Q Consensus        22 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (537)
                      .+.++.+.+|.......++.+++..+    +.+....|.+|+||||+||..|+.++|++|+.. ....++.+|..|+|||
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPl   76 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDP----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPL   76 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcCh----hhhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchh
Confidence            35688899999999999999998865    233344555999999999999999999999973 4456666799999999


Q ss_pred             HHHHHcCCHHHHHHHHHh-CChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHH
Q 009331          102 HIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI  180 (537)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i  180 (537)
                      |+||..|+.++|+.|+.+ +++++.. +..|+||||||+..|..+++++|+++|+.+ ++.|..|.||||.|+..|.+++
T Consensus        77 hia~s~g~~evVk~Ll~r~~advna~-tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkv  154 (226)
T KOG4412|consen   77 HIAASNGNDEVVKELLNRSGADVNAT-TNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKV  154 (226)
T ss_pred             hhhhhcCcHHHHHHHhcCCCCCccee-cCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhh
Confidence            999999999999999999 7776654 889999999999999999999999999887 8899999999999999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh
Q 009331          181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (537)
Q Consensus       181 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~  243 (537)
                      +++|+..++..+ ..|..|+||||.|...|+.++...|++. +.+++..|+.| ||+..|+-.
T Consensus       155 ie~Li~~~a~~n-~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  155 IEYLISQGAPLN-TQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             HHHHHhcCCCCC-cccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC-chHHHHHHH
Confidence            999999996654 4599999999999888999999999995 57789999988 998887653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-32  Score=289.46  Aligned_cols=254  Identities=24%  Similarity=0.280  Sum_probs=226.9

Q ss_pred             CCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHH-----HHHcC
Q 009331           34 GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHI-----AAKQG  108 (537)
Q Consensus        34 g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~-----Aa~~g  108 (537)
                      ...+.++++++.+.      ..+..+..+.||||.|+..|+.++|+.|++.|.  +++..+..|.||||.     |+..|
T Consensus        13 ~~~~~~~~~~~~~~------~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~--~~~~~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         13 IKVKNIKYIIMEDD------LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGA--DINSSTKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             HHHHHHHHHHhcCc------cchhhhcccchhhhhhhccCCHHHHHHHHHcCC--CCCCccccCcCHHHHHHHHHHHhhc
Confidence            34577788887652      234457889999999999999999999999874  455677889999999     99999


Q ss_pred             CHHHHHHHHHhCChhhhcCCCCCChHHHHHH--hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC--cHHHHHHH
Q 009331          109 CLEVLKILMEALPELLMTFDSSNTTALHTAS--SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLEIVKAL  184 (537)
Q Consensus       109 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~L  184 (537)
                      +.+++++|++.++++ ...|..|.||||+|+  ..|+.+++++|+++|+++ ...+..|.||||.|+..|  +.+++++|
T Consensus        85 ~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~L  162 (480)
T PHA03100         85 VKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLL  162 (480)
T ss_pred             hHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHH
Confidence            999999999999998 556899999999999  999999999999999987 667889999999999999  99999999


Q ss_pred             HhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCC------CcHHHHHHHhCc--HHHHHHHhhhc
Q 009331          185 LSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG------NSALHIATRKGR--VQIVQKLLNIN  256 (537)
Q Consensus       185 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G------~T~Lh~A~~~~~--~~iv~~Ll~~~  256 (537)
                      +++++++... |..|.||||.|+..|+.+++++|++ .+.+++..+..|      .||||.|+..++  .+++++|++ .
T Consensus       163 l~~g~din~~-d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~  239 (480)
T PHA03100        163 IDKGVDINAK-NRYGYTPLHIAVEKGNIDVIKFLLD-NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-Y  239 (480)
T ss_pred             HHCCCCcccc-cCCCCCHHHHHHHhCCHHHHHHHHH-cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-c
Confidence            9999987544 6799999999999999999999999 567788888888      899999999999  999999999 7


Q ss_pred             CCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCCc
Q 009331          257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ  300 (537)
Q Consensus       257 g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~  300 (537)
                      |++++.+|..|.||||+|+..++.+++++|+++|+++......+
T Consensus       240 g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g  283 (480)
T PHA03100        240 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG  283 (480)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            99999999999999999999999999999999999876544433

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-32  Score=263.24  Aligned_cols=214  Identities=20%  Similarity=0.172  Sum_probs=189.3

Q ss_pred             cCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHH
Q 009331           72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL  151 (537)
Q Consensus        72 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  151 (537)
                      .++.+++++|++.+.    ...|.+|.||||+|+..|+.++++.|++.++....   .++.||||+|+..|+.+++++|+
T Consensus         9 ~~~~~~~~~Lis~~a----~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSSKDA----FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHhCCC----CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCCHHHHHHHCCCHHHHHHHH
Confidence            467899999999763    35788999999999999999999999999886543   24789999999999999999999


Q ss_pred             HcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCC-ChHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 009331          152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG-QTALHMAVKGQSIELVDELVKVEPVIINMVD  230 (537)
Q Consensus       152 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d  230 (537)
                      +.|+++ ...|..|.||||+|+..|+.++++.|++++++.... +..| .||||+|+..|+.+++++|++..+..   .|
T Consensus        82 ~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d  156 (284)
T PHA02791         82 FSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FD  156 (284)
T ss_pred             HCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cc
Confidence            999987 567899999999999999999999999999987544 5666 59999999999999999999965432   33


Q ss_pred             -CCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCH-HHHHHHcCChhHHHHHHhcCCCCCCCCC
Q 009331          231 -AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETA-LDTAEKTGHSEIGVILKEHGVPCGKSIK  298 (537)
Q Consensus       231 -~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~~~~~i~~~L~~~ga~~~~~~~  298 (537)
                       ..|+||||+|+..|+.+++++|++ .|++++.+|..|.|| ||+|+..|+.+++++|+++|+++.....
T Consensus       157 ~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        157 LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence             358999999999999999999999 799999999999987 9999999999999999999999865533

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.2e-32  Score=285.49  Aligned_cols=260  Identities=20%  Similarity=0.208  Sum_probs=223.9

Q ss_pred             CCCCChHHHHHH--cCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHc-----CCHHHHHHHHHhCCccccccc
Q 009331           21 KRDDTPLQSLVR--TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY-----GYVDMVREMIRYHDTSLAGIK   93 (537)
Q Consensus        21 ~~~~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~-----g~~~iv~~Ll~~~~~~~~~~~   93 (537)
                      ..+.|+++.+..  .++.++|+.|++.|.+.      +..+..|.||||.|+.+     ++.++++.|++.|  .+.+..
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv------n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G--adiN~~  105 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANV------NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG--ADINKK  105 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCC------CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC--CCCCCC
Confidence            346677664444  45899999999999874      56689999999999864     6799999999987  456778


Q ss_pred             CCCCChHHHHHHHcC---CHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC---HHHHHHHHHcCCCcccccccCCCc
Q 009331           94 ARNGYDAFHIAAKQG---CLEVLKILMEALPELLMTFDSSNTTALHTASSQGH---VEVVKFLLEKGSTLATIARSNGKT  167 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g---~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~g~t  167 (537)
                      +..|.||||+|+..+   +.+++++|+++|+++... |..|.||||+|+..|+   .+++++|+++|+++....+..|.|
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t  184 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLL-DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYD  184 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCc
Confidence            899999999999986   789999999999987654 8999999999999998   999999999999985555667999


Q ss_pred             HHHHHHHC----CcHHHHHHHHhcCCCCcccCCCCCChHHH-------HHHhcCCHHHHHHHHhcCCcccccccCCCCcH
Q 009331          168 ALHSAARN----GHLEIVKALLSKEPGIVLRNDKKGQTALH-------MAVKGQSIELVDELVKVEPVIINMVDAKGNSA  236 (537)
Q Consensus       168 pL~~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~  236 (537)
                      |||.++..    ++.+++++|+++|.+... .+..|.++++       .+...+..+++.+|+.  +.++|.+|..|+||
T Consensus       185 ~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~-~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TP  261 (489)
T PHA02798        185 TLHCYFKYNIDRIDADILKLFVDNGFIINK-ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFNP  261 (489)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHCCCCccc-CCccccchHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCccH
Confidence            99998764    589999999999988754 3667788766       2445677888988876  36799999999999


Q ss_pred             HHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          237 LHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       237 Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      ||+|+..++.+++++|++ .|+|++.+|..|.|||++|+..++.++++.|++.|++.
T Consensus       262 L~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        262 LYYSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             HHHHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            999999999999999999 79999999999999999999999999999999988764

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-31  Score=281.55  Aligned_cols=264  Identities=22%  Similarity=0.239  Sum_probs=215.5

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHH
Q 009331           27 LQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAK  106 (537)
Q Consensus        27 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~  106 (537)
                      |..++..++.+-+...++.-...  ....+..+..+.||||.|+..|+.++|+.|++.|  .+.+..+..|.||||+||.
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~   79 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHT--ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICK   79 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhh--hhhcCcccccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHH
Confidence            56667777765555555542111  1223445667899999999999999999999987  4566788999999999999


Q ss_pred             cCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHH---------------------------------HHHHHc
Q 009331          107 QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVV---------------------------------KFLLEK  153 (537)
Q Consensus       107 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv---------------------------------~~Ll~~  153 (537)
                      .|+.++++.|++.+.....   ..+.+|++.|+..++.+++                                 ++|+++
T Consensus        80 ~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~  156 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY  156 (477)
T ss_pred             CccHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHc
Confidence            9999999999998654322   4678899999988776554                                 555555


Q ss_pred             CCCcccccccC-CCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCC
Q 009331          154 GSTLATIARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK  232 (537)
Q Consensus       154 ~~~~~~~~~~~-g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~  232 (537)
                      |+++ ...+.+ |.||||+|+..|+.+++++|++.++++. ..|..|.||||.|+..|+.+++++|++ .+.+++.+|..
T Consensus       157 gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~  233 (477)
T PHA02878        157 GADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKC  233 (477)
T ss_pred             CCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCC
Confidence            6665 345556 9999999999999999999999999865 458899999999999999999999999 56778999999


Q ss_pred             CCcHHHHHHHh-CcHHHHHHHhhhcCCCcccccC-CCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCCccch
Q 009331          233 GNSALHIATRK-GRVQIVQKLLNINGVDKAVINK-SRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANS  303 (537)
Q Consensus       233 G~T~Lh~A~~~-~~~~iv~~Ll~~~g~~~~~~~~-~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  303 (537)
                      |+||||+|+.. ++.+++++|++ .|++++..+. .|.||||+|  .++.+++++|+++|+++......+..+
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~Tp  303 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLE-HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTP  303 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            99999999976 78999999999 7999999886 799999999  567899999999999987655544433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2e-31  Score=284.81  Aligned_cols=271  Identities=18%  Similarity=0.170  Sum_probs=219.3

Q ss_pred             CCCCChHHHH-----HHcCCHHHHHHHHhhC-CchhHHHHHHcc-cCCCCcHHHHHHH--cCCHHHHHHHHHhCCccccc
Q 009331           21 KRDDTPLQSL-----VRTGSVELVLDMISSY-GDMELREMLSKM-NQSGETALYVAAE--YGYVDMVREMIRYHDTSLAG   91 (537)
Q Consensus        21 ~~~~t~Lh~A-----~~~g~~~~v~~Ll~~~-~~~~~~~~l~~~-~~~g~t~L~~Aa~--~g~~~iv~~Ll~~~~~~~~~   91 (537)
                      ..+..+++..     .+.++.+++++|++.+ .+.      +.. |..|.||||.|+.  +++.++|++|++.|  .+.+
T Consensus       135 ~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADI------N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G--ADVN  206 (764)
T PHA02716        135 NGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNL------NYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG--VNVN  206 (764)
T ss_pred             cccchHHHHHHhhhcccCCCHHHHHHHHHCCCCCc------ccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC--CCCC
Confidence            3455555544     4568999999999998 653      444 7889999999865  46789999999987  4566


Q ss_pred             ccCCCCChHHHHHHHcCC--HHHHHHHHHhCChhhhcCCCCCChHHHHH-------------------------------
Q 009331           92 IKARNGYDAFHIAAKQGC--LEVLKILMEALPELLMTFDSSNTTALHTA-------------------------------  138 (537)
Q Consensus        92 ~~~~~g~t~Lh~Aa~~g~--~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A-------------------------------  138 (537)
                      .+|..|.||||+|+..|+  .+++++|++.|+++... |..|+||||+|                               
T Consensus       207 ~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k-D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L  285 (764)
T PHA02716        207 LQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK-CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMIL  285 (764)
T ss_pred             CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhh
Confidence            788999999999999995  59999999999987654 88999999975                               


Q ss_pred             ------HhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH--CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh--
Q 009331          139 ------SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR--NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK--  208 (537)
Q Consensus       139 ------~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--  208 (537)
                            +..|+.+++++|+++|+++ ...|.+|+||||+|+.  .++.+++++|++.+.++. ..|..|+||||.|+.  
T Consensus       286 ~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~l  363 (764)
T PHA02716        286 HSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSML  363 (764)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhh
Confidence                  3457889999999999997 6779999999999864  568999999999999865 458999999999875  


Q ss_pred             ------------cCCHHHHHHHHhcCCcccccccCCCCcHHHHH----HHhCcHHHHHHHhhhc----------------
Q 009331          209 ------------GQSIELVDELVKVEPVIINMVDAKGNSALHIA----TRKGRVQIVQKLLNIN----------------  256 (537)
Q Consensus       209 ------------~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A----~~~~~~~iv~~Ll~~~----------------  256 (537)
                                  .++.+++++|++ .+.+++.+|..|+||||.+    ...++.+++++|++..                
T Consensus       364 av~~~ld~~~~~~~~~eVVklLL~-~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~  442 (764)
T PHA02716        364 SVVNILDPETDNDIRLDVIQCLIS-LGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIR  442 (764)
T ss_pred             hhhccccccccccChHHHHHHHHH-CCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhc
Confidence                        368999999999 5788999999999999942    2346788888887631                


Q ss_pred             --------------------------------------------CCCcccccCCCCCHHHHHHHcCChh-----HHHHHH
Q 009331          257 --------------------------------------------GVDKAVINKSRETALDTAEKTGHSE-----IGVILK  287 (537)
Q Consensus       257 --------------------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~-----i~~~L~  287 (537)
                                                                  +.+++..|..|.||||+|+..|+.+     ++++|+
T Consensus       443 ~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL  522 (764)
T PHA02716        443 VDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL  522 (764)
T ss_pred             cCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH
Confidence                                                        1123456788999999999998874     459999


Q ss_pred             hcCCCCCCCCCCccch
Q 009331          288 EHGVPCGKSIKPQANS  303 (537)
Q Consensus       288 ~~ga~~~~~~~~~~~~  303 (537)
                      +.|+++......+..+
T Consensus       523 ~~GADIN~~d~~G~TP  538 (764)
T PHA02716        523 SIQYNINIPTKNGVTP  538 (764)
T ss_pred             hCCCCCcccCCCCCCH
Confidence            9999987665544433

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-30  Score=273.62  Aligned_cols=270  Identities=17%  Similarity=0.153  Sum_probs=184.9

Q ss_pred             ccCCCCCChHHHHHHcC---CHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcC--CHHHHHHHHHhCCcccccc
Q 009331           18 LTAKRDDTPLQSLVRTG---SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG--YVDMVREMIRYHDTSLAGI   92 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g--~~~iv~~Ll~~~~~~~~~~   92 (537)
                      ..|..|.||||+|+..|   +.++|+.|+++|++.      +.+|..|.||||+|+..|  +.++|+.|++.+.....+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi------n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER------LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC------cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            45678999999999997   599999999999875      456899999999999977  7999999999875443333


Q ss_pred             cCCCCChHHHHHH-----------------------------------------HcCCHHHHHHHHHhCChhh------h
Q 009331           93 KARNGYDAFHIAA-----------------------------------------KQGCLEVLKILMEALPELL------M  125 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa-----------------------------------------~~g~~~iv~~Ll~~~~~~~------~  125 (537)
                      .+..+.+|||.++                                         ..++.++|++|++.|++..      .
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            3434444554444                                         4444444555554444431      0


Q ss_pred             cCCCCCChH-HHHH------HhCCCHHHHHHHHHcCCCcccccccCCCcHHHH--HHHCCcHHHHHHHHh----------
Q 009331          126 TFDSSNTTA-LHTA------SSQGHVEVVKFLLEKGSTLATIARSNGKTALHS--AARNGHLEIVKALLS----------  186 (537)
Q Consensus       126 ~~d~~g~tp-Lh~A------~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~--A~~~g~~~iv~~Ll~----------  186 (537)
                      ..+..+.+| ||++      ...++.|++++|+++|+++ +..|.+|.||||+  |...|+.|++++|++          
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence            011222222 2211      2233445555555555444 3456677788874  444555666666666          


Q ss_pred             ----------------------cCCC------------------------------------------------------
Q 009331          187 ----------------------KEPG------------------------------------------------------  190 (537)
Q Consensus       187 ----------------------~~~~------------------------------------------------------  190 (537)
                                            ++.+                                                      
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                  2322                                                      


Q ss_pred             -----------------------CcccCCCCCChHHHHHHhcCC----HHHHHHHHhcCC-cccccccCCCCcHHHH---
Q 009331          191 -----------------------IVLRNDKKGQTALHMAVKGQS----IELVDELVKVEP-VIINMVDAKGNSALHI---  239 (537)
Q Consensus       191 -----------------------~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~-~~~n~~d~~G~T~Lh~---  239 (537)
                                             +..  +..|.||||+|+..++    .+++++|+++++ .++|.+|.+|.||||.   
T Consensus       349 ~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~  426 (672)
T PHA02730        349 NYLHYGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLIL  426 (672)
T ss_pred             HHHhcCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHH
Confidence                                   221  2567899998888774    899999998654 3688999999999984   


Q ss_pred             HHHhC---------cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 009331          240 ATRKG---------RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI  297 (537)
Q Consensus       240 A~~~~---------~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~  297 (537)
                      |...+         ..+++++|++ +|++++.+|..|.|||++|+..++.+++++|+++|++.....
T Consensus       427 a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d  492 (672)
T PHA02730        427 SRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS  492 (672)
T ss_pred             HHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence            33222         2356899998 799999999999999999999999999999999999875543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=278.11  Aligned_cols=273  Identities=19%  Similarity=0.135  Sum_probs=199.6

Q ss_pred             ccCCCCCChHHHHHHc---CCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCC--------------------
Q 009331           18 LTAKRDDTPLQSLVRT---GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY--------------------   74 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~--------------------   74 (537)
                      ..|.+|.||||+|+..   |+.++|+.|++.|.+.      +..+..|.||||.|+..|+                    
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v------~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP------LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc------cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCC
Confidence            3478899999997665   8899999999999764      3456677777777766554                    


Q ss_pred             ---------------HHHHHHHHHhCCcccccccCCCCChHHHHHH--HcCCHHHHHHHHHhCChhhhc--CCCCC----
Q 009331           75 ---------------VDMVREMIRYHDTSLAGIKARNGYDAFHIAA--KQGCLEVLKILMEALPELLMT--FDSSN----  131 (537)
Q Consensus        75 ---------------~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~~~~~--~d~~g----  131 (537)
                                     .++|++|++.|  .+.+..|.+|.||||.|+  ..|+.+++++|+++|+++...  .+..|    
T Consensus       101 ~~~~~~~~~a~~~~~~e~vk~Ll~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~  178 (661)
T PHA02917        101 NDFNIFSYMKSKNVDVDLIKVLVEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYD  178 (661)
T ss_pred             CCcchHHHHHhhcCCHHHHHHHHHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccc
Confidence                           45555555554  345567888999999654  478999999999999887532  12233    


Q ss_pred             -------ChHHHHHHh-----------CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH--HHHHHHHhcCCCC
Q 009331          132 -------TTALHTASS-----------QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL--EIVKALLSKEPGI  191 (537)
Q Consensus       132 -------~tpLh~A~~-----------~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~--~iv~~Ll~~~~~~  191 (537)
                             .||||+|+.           .++.+++++|+++|+++ +..|.+|.||||+|+..|+.  ++++.|++ +.+.
T Consensus       179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence                   599999986           46899999999999998 66789999999999999985  78888875 4432


Q ss_pred             cc---cCCCCCCh-------------------------------------------------------------HHHH--
Q 009331          192 VL---RNDKKGQT-------------------------------------------------------------ALHM--  205 (537)
Q Consensus       192 ~~---~~d~~g~t-------------------------------------------------------------~Lh~--  205 (537)
                      ..   ..|..|.+                                                             ++|.  
T Consensus       257 ~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (661)
T PHA02917        257 TAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILI  336 (661)
T ss_pred             cccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHH
Confidence            10   01111111                                                             2221  


Q ss_pred             -HHhcCC--HHHHHHHHhcC-----------------------------CcccccccCCCCcHHHHHHHhC---------
Q 009331          206 -AVKGQS--IELVDELVKVE-----------------------------PVIINMVDAKGNSALHIATRKG---------  244 (537)
Q Consensus       206 -A~~~~~--~~~v~~Ll~~~-----------------------------~~~~n~~d~~G~T~Lh~A~~~~---------  244 (537)
                       |+..|.  .+++++|++.+                             +..++.+|.+|+||||.|++.+         
T Consensus       337 ~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~  416 (661)
T PHA02917        337 EYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTY  416 (661)
T ss_pred             HHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhh
Confidence             222343  34777777642                             2334556678999999987533         


Q ss_pred             --------------cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCCcc
Q 009331          245 --------------RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQA  301 (537)
Q Consensus       245 --------------~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~  301 (537)
                                    ..++++.|++ +|++++.+|..|.||||+|+..++.+++++|+++|++.......+.
T Consensus       417 ~~~~~~~~~~~~~~~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~  486 (661)
T PHA02917        417 TYKKGLCDMSYACPILSTINICLP-YLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGY  486 (661)
T ss_pred             hhhhccchhhhhhhhHHHHHHHHH-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCC
Confidence                          3567899998 7999999999999999999999999999999999999866544433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.5e-31  Score=253.34  Aligned_cols=194  Identities=26%  Similarity=0.402  Sum_probs=168.6

Q ss_pred             CCCCCChHHHHHHcCCHHHHHHHHhhCC-chhHHH--HHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           20 AKRDDTPLQSLVRTGSVELVLDMISSYG-DMELRE--MLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~--~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      ..+|.|||-.|+++|+.++|++|+++.. +++...  .++..+..|-+||..|+..||+++|+.|++.+  ...+.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--Ccccccccc
Confidence            4678899999999999999999999652 222111  12344667889999999999999999999988  455666677


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      +.|||-.||.-|+++++++|++++.++.-. |..|.|.||.||..||.+++++|++.|+++ +..+..|.|+||.|++.|
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~Ia-nrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIA-NRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCccc-ccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcc
Confidence            789999999999999999999999987654 999999999999999999999999999998 667889999999999999


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHH
Q 009331          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  219 (537)
                      ++|+++.|+.++....  +|..|.|||..|+..|..++|++|+
T Consensus       195 ~vdivq~Ll~~ga~i~--~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKID--VDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cHHHHHHHHhCCceee--ecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999999988754  4788999999999999999988888

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=266.52  Aligned_cols=254  Identities=16%  Similarity=0.165  Sum_probs=214.4

Q ss_pred             cCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHc--CCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcC--
Q 009331           33 TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY--GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG--  108 (537)
Q Consensus        33 ~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--  108 (537)
                      ..+.++++.|++.|.+.+      .. ..|.||||.++..  ++.++|+.|++.|.+.  +.++ .+.||||.|+.++  
T Consensus        13 ~~~~~~v~~LL~~GadvN------~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv--n~~~-~~~tpL~~a~~~~~~   82 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVN------EE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV--NYKG-YIETPLCAVLRNREI   82 (494)
T ss_pred             cCcHHHHHHHHHcCCCcc------cc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc--cCCC-CCCCcHHHHHhccCc
Confidence            578999999999998753      33 4689999876654  3789999999998554  3344 5789999998764  


Q ss_pred             ----CHHHHHHHHHhCChhhhcCCCCCChHHHHHHhC---CCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC--CcHH
Q 009331          109 ----CLEVLKILMEALPELLMTFDSSNTTALHTASSQ---GHVEVVKFLLEKGSTLATIARSNGKTALHSAARN--GHLE  179 (537)
Q Consensus       109 ----~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~  179 (537)
                          +.+++++|+++|+++... |..|.||||.|+..   |+.+++++|+++|+++....|..|.||||+|+..  ++.+
T Consensus        83 ~~~~~~~iv~~Ll~~Gadin~~-d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~  161 (494)
T PHA02989         83 TSNKIKKIVKLLLKFGADINLK-TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKD  161 (494)
T ss_pred             chhhHHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHH
Confidence                478999999999987654 88999999988765   6899999999999998567789999999998754  6899


Q ss_pred             HHHHHHhcCCCCcccCCCCCChHHHHHHhc----CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh------CcHHHH
Q 009331          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKG----QSIELVDELVKVEPVIINMVDAKGNSALHIATRK------GRVQIV  249 (537)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~----~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~------~~~~iv  249 (537)
                      ++++|+++|+++....+..|.||||+|+.+    ++.+++++|++ .+.+++.+|..|.||||.++..      +..+++
T Consensus       162 iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~-~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il  240 (494)
T PHA02989        162 VIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIK-KGVNIETNNNGSESVLESFLDNNKILSKKEFKVL  240 (494)
T ss_pred             HHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHh-CCCCccccCCccccHHHHHHHhchhhcccchHHH
Confidence            999999999998765678899999999875    48999999999 5677899999999999988764      356788


Q ss_pred             HHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCCc
Q 009331          250 QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ  300 (537)
Q Consensus       250 ~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~  300 (537)
                      ++|+.  +++++.+|..|.||||+|+..++.+++++|+++|+++......+
T Consensus       241 ~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G  289 (494)
T PHA02989        241 NFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG  289 (494)
T ss_pred             HHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC
Confidence            87765  69999999999999999999999999999999999986654443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2e-29  Score=253.94  Aligned_cols=210  Identities=30%  Similarity=0.391  Sum_probs=189.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCC
Q 009331           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG  142 (537)
Q Consensus        63 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  142 (537)
                      .+-++.|++.|.++-|+.|++.. ....+..|.+|.|+||+||.+++.+++++|++++++++..-..-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            35678999999999999999973 45666778899999999999999999999999999988775577899999999999


Q ss_pred             CHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q 009331          143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE  222 (537)
Q Consensus       143 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  222 (537)
                      +..+|.+|+++|+++ ...|.+|.+|+|.|+..|+.-++-+|+.++.+.. .+|.+|+||||+|+.+|....+..|++.+
T Consensus       124 ~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            999999999999998 7889999999999999999999999999997754 55999999999999999988899999854


Q ss_pred             Cccccccc-CCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHc
Q 009331          223 PVIINMVD-AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKT  277 (537)
Q Consensus       223 ~~~~n~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~  277 (537)
                       ..++.+| +.|+||||+|+..|+..++. |+...|++.+.+|.+|+||+++|...
T Consensus       202 -a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 -ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             -ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence             4456666 99999999999999999999 55448999999999999999999876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=259.53  Aligned_cols=236  Identities=19%  Similarity=0.270  Sum_probs=202.4

Q ss_pred             hccCCCCCChHHHHHHc-----CCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcC---CHHHHHHHHHhCCcc
Q 009331           17 QLTAKRDDTPLQSLVRT-----GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG---YVDMVREMIRYHDTS   88 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g---~~~iv~~Ll~~~~~~   88 (537)
                      +..+..|.||||.|+..     ++.++++.|++.|++.      +.+|..|.||||+|+..|   +.+++++|++.|.  
T Consensus        65 n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi------N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga--  136 (489)
T PHA02798         65 NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI------NKKNSDGETPLYCLLSNGYINNLEILLFMIENGA--  136 (489)
T ss_pred             CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC------CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCC--
Confidence            45678999999999864     7799999999999864      567899999999999986   7899999999874  


Q ss_pred             cccccCCCCChHHHHHHHcCC---HHHHHHHHHhCChhhhcCCCCCChHHHHHHhC----CCHHHHHHHHHcCCCccccc
Q 009331           89 LAGIKARNGYDAFHIAAKQGC---LEVLKILMEALPELLMTFDSSNTTALHTASSQ----GHVEVVKFLLEKGSTLATIA  161 (537)
Q Consensus        89 ~~~~~~~~g~t~Lh~Aa~~g~---~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~----g~~~iv~~Ll~~~~~~~~~~  161 (537)
                      +.+..+..|.||||+|+..|+   .+++++|++.|.++....+..|.||||.++..    ++.+++++|+++|+++ ...
T Consensus       137 dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i-~~~  215 (489)
T PHA02798        137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII-NKE  215 (489)
T ss_pred             CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc-ccC
Confidence            566789999999999999998   99999999999988766567899999998764    5899999999999987 455


Q ss_pred             ccCCCcHHH-------HHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 009331          162 RSNGKTALH-------SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN  234 (537)
Q Consensus       162 ~~~g~tpL~-------~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~  234 (537)
                      +..|.++++       .+...++.+++.+|+. +.++ +..|..|.||||.|+..|+.+++++|++ .++++|.+|..|+
T Consensus       216 ~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~  292 (489)
T PHA02798        216 NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDI-NQVDELGFNPLYYSVSHNNRKIFEYLLQ-LGGDINIITELGN  292 (489)
T ss_pred             CccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCC-CCcCcCCccHHHHHHHcCcHHHHHHHHH-cCCcccccCCCCC
Confidence            667788766       2445677888888776 4554 4558899999999999999999999999 6778999999999


Q ss_pred             cHHHHHHHhCcHHHHHHHhhhcCCCcccccC
Q 009331          235 SALHIATRKGRVQIVQKLLNINGVDKAVINK  265 (537)
Q Consensus       235 T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~  265 (537)
                      ||||+|+..++.++++.|++ .+++++..+.
T Consensus       293 TpL~~A~~~~~~~iv~~lL~-~~~~~~~i~~  322 (489)
T PHA02798        293 TCLFTAFENESKFIFNSILN-KKPNKNTISY  322 (489)
T ss_pred             cHHHHHHHcCcHHHHHHHHc-cCCCHHHHHH
Confidence            99999999999999999998 6778775544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=9.6e-30  Score=276.49  Aligned_cols=262  Identities=30%  Similarity=0.426  Sum_probs=206.2

Q ss_pred             cCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCC
Q 009331           19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY   98 (537)
Q Consensus        19 ~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   98 (537)
                      .++.+.||+|.|++.|..+.++.++.++.++      +..+..|.||||.|+..++.++|+.+++.+  ...+..+..|+
T Consensus       370 a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~------~~~gk~gvTplh~aa~~~~~~~v~l~l~~g--A~~~~~~~lG~  441 (1143)
T KOG4177|consen  370 AEEKGFTPLHLAVKSGRVSVVELLLEAGADP------NSAGKNGVTPLHVAAHYGNPRVVKLLLKRG--ASPNAKAKLGY  441 (1143)
T ss_pred             ccccCCcchhhhcccCchhHHHhhhhccCCc------ccCCCCCcceeeehhhccCcceEEEEeccC--CChhhHhhcCC
Confidence            3456666666666666666666666666542      444666677777777777777777766655  33445666777


Q ss_pred             hHHHHHHHcC-CHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCc
Q 009331           99 DAFHIAAKQG-CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (537)
Q Consensus        99 t~Lh~Aa~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  177 (537)
                      ||+|+|+..| ..++...+++.+.+.+.. -..|.||||.|+..|+.+++..|++.++.. ......|.+++|.|...+.
T Consensus       442 T~lhvaa~~g~~~~~~~~l~~~g~~~n~~-s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  442 TPLHVAAKKGRYLQIARLLLQYGADPNAV-SKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             ChhhhhhhcccHhhhhhhHhhcCCCcchh-ccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccchhhhhhhhhh
Confidence            7777777777 666666666666655443 567778888888888888888887777544 3445667788888888888


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcC
Q 009331          178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING  257 (537)
Q Consensus       178 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g  257 (537)
                      ..+++.+++++.++... +..|.||||.|+.+|+.++|++|++ ++.+++.+|+.|+||||.||..|+.+++.+|++ +|
T Consensus       520 v~~~~~l~~~ga~v~~~-~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~G  596 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLR-TGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK-HG  596 (1143)
T ss_pred             HHHHHHHhhcCCceehh-cccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHH-cC
Confidence            88888888887776544 6889999999999999999999999 788899999999999999999999999999999 89


Q ss_pred             CCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          258 VDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       258 ~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      +++|..|.+|.|||++|...|+.++++.|+..++..
T Consensus       597 A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  597 ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             CCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            999999999999999999999999999999999884

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=5.8e-29  Score=270.49  Aligned_cols=272  Identities=26%  Similarity=0.401  Sum_probs=232.9

Q ss_pred             HhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 009331           14 MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIK   93 (537)
Q Consensus        14 ~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~   93 (537)
                      -..+..+..|.+|||.+++.|+.++...+.+.++..      ......|.||+|+|+.+|..++++.+++.+..  .+.+
T Consensus       332 ~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~------~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~--~~~~  403 (1143)
T KOG4177|consen  332 ATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQR------RQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD--PNSA  403 (1143)
T ss_pred             CCccccCcCCcccccHhhhhhhHHHHHHhhcccccc------CcccccCCcchhhhcccCchhHHHhhhhccCC--cccC
Confidence            445667788888888888888888777666665432      33467788999999999999999999988754  6678


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCC-CHHHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG-HVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  172 (537)
                      +..|.||||.|+..++.++++.+++.+++.... +..|.||+|+|+..| ..+....+++.+.++ +..-..|.||||.|
T Consensus       404 gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~-~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhla  481 (1143)
T KOG4177|consen  404 GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAK-AKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLA  481 (1143)
T ss_pred             CCCCcceeeehhhccCcceEEEEeccCCChhhH-hhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhh
Confidence            888999999999999999999999988876655 788899999999999 788888888888887 55677899999999


Q ss_pred             HHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL  252 (537)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  252 (537)
                      +..|+.++++.|++.++.... ..+.|.+++|.|...+...+++.+++ .+..++.++..|+||||.|+.+|+..+|++|
T Consensus       482 aq~Gh~~~~~llle~~~~~~~-~~~~~l~~lhla~~~~~v~~~~~l~~-~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  482 AQEGHTEVVQLLLEGGANDNL-DAKKGLTPLHLAADEDTVKVAKILLE-HGANVDLRTGRGYTPLHVAVHYGNVDLVKFL  559 (1143)
T ss_pred             hccCCchHHHHhhhcCCccCc-cchhccchhhhhhhhhhHHHHHHHhh-cCCceehhcccccchHHHHHhcCCchHHHHh
Confidence            999999999999988754433 35778999999999999999999998 6777899999999999999999999999999


Q ss_pred             hhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCC
Q 009331          253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK  298 (537)
Q Consensus       253 l~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~  298 (537)
                      ++ +|+|++.+++.|+||||.|+..|+.+++.+|+++|+.++....
T Consensus       560 Le-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~  604 (1143)
T KOG4177|consen  560 LE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL  604 (1143)
T ss_pred             hh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc
Confidence            99 8999999999999999999999999999999999999866543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.7e-27  Score=254.94  Aligned_cols=243  Identities=18%  Similarity=0.197  Sum_probs=195.6

Q ss_pred             HHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHH-
Q 009331           36 VELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE-  111 (537)
Q Consensus        36 ~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~-  111 (537)
                      ++.+++|+..+.+      .+..|.+|+||||+|+..   |+.++|+.|++.|.+  .+..+..|.||||.|+..|+.+ 
T Consensus        12 ~~~~~~l~~~~~~------~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~--v~~~~~~g~TpL~~Aa~~g~~~v   83 (661)
T PHA02917         12 LDELKQMLRDRDP------NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN--PLHKNWRQLTPLEEYTNSRHVKV   83 (661)
T ss_pred             HHHHHHHHhccCc------ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCChhH
Confidence            5678888876654      355689999999998665   889999999998754  4567889999999999999855 


Q ss_pred             ---HHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH--HCCcHHHHHHHHh
Q 009331          112 ---VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA--RNGHLEIVKALLS  186 (537)
Q Consensus       112 ---iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~  186 (537)
                         +++.|++.+... ...+  ..+++|+|+..|+.++|++|+++|+++ +..|.+|.||||.|+  ..|+.+++++|++
T Consensus        84 ~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~  159 (661)
T PHA02917         84 NKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIE  159 (661)
T ss_pred             HHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHH
Confidence               556777654321 1112  236778899999999999999999998 677899999999654  5789999999999


Q ss_pred             cCCCCccc--CCCCC-----------ChHHHHHHh-----------cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH
Q 009331          187 KEPGIVLR--NDKKG-----------QTALHMAVK-----------GQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (537)
Q Consensus       187 ~~~~~~~~--~d~~g-----------~t~Lh~A~~-----------~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~  242 (537)
                      +|+++...  .+..|           .||||+|+.           +++.+++++|++ .+.++|.+|.+|+||||+|+.
T Consensus       160 ~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        160 NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIK  238 (661)
T ss_pred             cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHH
Confidence            99987532  12233           599999986           468999999999 577899999999999999999


Q ss_pred             hCcH--HHHHHHhhhcCCCcc----cccCCCCCHHHHHHHcC---------ChhHHHHHHhcCCCC
Q 009331          243 KGRV--QIVQKLLNINGVDKA----VINKSRETALDTAEKTG---------HSEIGVILKEHGVPC  293 (537)
Q Consensus       243 ~~~~--~iv~~Ll~~~g~~~~----~~~~~g~t~L~~A~~~~---------~~~i~~~L~~~ga~~  293 (537)
                      +|+.  +++++|++  |++++    ..|..|.+|+++|+..+         +.+++++|+++|++.
T Consensus       239 ~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        239 SSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             cCCCcHHHHHHHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence            9985  79999974  77765    45667889999998421         669999999999863

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=8.6e-28  Score=232.29  Aligned_cols=221  Identities=29%  Similarity=0.439  Sum_probs=190.5

Q ss_pred             HHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCc-c------cccccCCCCChH
Q 009331           28 QSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT-S------LAGIKARNGYDA  100 (537)
Q Consensus        28 h~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~-~------~~~~~~~~g~t~  100 (537)
                      ..|++.|++..+..|+.+..+.++..++.. ..+|.|||-+||++||.++|++|+++... .      ..+-...+|-+|
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~-~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGE-VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhcc-ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            378999999999999988777766665554 56788999999999999999999995421 1      112234567889


Q ss_pred             HHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHH
Q 009331          101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI  180 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i  180 (537)
                      |-.|+..||+++|+.|++++++++.. .....|||-.||..|++|+|++|+++|+++ .+.|..|.|.|++||.+|+.+|
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~t-T~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I  165 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDT-TRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDI  165 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccc-cccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHH
Confidence            99999999999999999999777655 556679999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       181 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +++|++.++|++. ++.+|.|+||.|++.|+.+++++|++++..  -.+|..|.|||..|+..|..+++++|++
T Consensus       166 ~qyLle~gADvn~-ks~kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  166 AQYLLEQGADVNA-KSYKGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHhCCCcch-hcccCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999765 479999999999999999999999995543  2577889999999999999999999996

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.9e-28  Score=245.60  Aligned_cols=211  Identities=26%  Similarity=0.375  Sum_probs=190.6

Q ss_pred             CCChHHHHHHcCCHHHHHHHHhh-CCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHH
Q 009331           23 DDTPLQSLVRTGSVELVLDMISS-YGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (537)
Q Consensus        23 ~~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (537)
                      ...-++.|++.|+++.|+.+++. +.      .++..|.+|.|+||+||.+++.+++++|++++++.+.- ...-+.|||
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~------~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~-gG~l~stPL  116 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGE------SVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAI-GGVLGSTPL  116 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCc------CCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCcccc-CCCCCCCcc
Confidence            34568899999999999999998 43      24667889999999999999999999999998654432 236788999


Q ss_pred             HHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHH
Q 009331          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (537)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv  181 (537)
                      |+|+++|+..++++|+++|++.... |..|.+|||.|++.|+.-+|-+|+.++.++ ..+|.+|+||||+|+.+|+...+
T Consensus       117 HWAar~G~~~vv~lLlqhGAdpt~~-D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v  194 (600)
T KOG0509|consen  117 HWAARNGHISVVDLLLQHGADPTLK-DKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFV  194 (600)
T ss_pred             hHHHHcCcHHHHHHHHHcCCCCcee-cCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHH
Confidence            9999999999999999999998765 999999999999999999999999999876 78999999999999999998889


Q ss_pred             HHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh
Q 009331          182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (537)
Q Consensus       182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~  243 (537)
                      ..|+..+++.....|..|.||||+|+..|+..++. |+..++...+.+|.+|.||+.+|..+
T Consensus       195 ~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  195 RRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHhcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999999988887799999999999999999999 66558888999999999999999877

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=243.20  Aligned_cols=267  Identities=15%  Similarity=0.164  Sum_probs=210.0

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHH-HH-cccCCCCcHHHHH------HHcCCHHHHHHHHHhCCcccccc
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREM-LS-KMNQSGETALYVA------AEYGYVDMVREMIRYHDTSLAGI   92 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-l~-~~~~~g~t~L~~A------a~~g~~~iv~~Ll~~~~~~~~~~   92 (537)
                      ..|.+|++.+...++.++|+.|++.|++..--.. -. ..++.+.|.||++      ..+++.|+++.|+++|  .+.+.
T Consensus       153 ~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G--adIN~  230 (672)
T PHA02730        153 CLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN--VSIHG  230 (672)
T ss_pred             ccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC--CCCCC
Confidence            3789999999999999999999999986420000 01 2223334566633      4567899999999998  45677


Q ss_pred             cCCCCChHHHH--HHHcCCHHHHHHHHH--------------------------------hCChhhh-------------
Q 009331           93 KARNGYDAFHI--AAKQGCLEVLKILME--------------------------------ALPELLM-------------  125 (537)
Q Consensus        93 ~~~~g~t~Lh~--Aa~~g~~~iv~~Ll~--------------------------------~~~~~~~-------------  125 (537)
                      +|..|.||||+  |...|+.|++++|++                                ++.+..-             
T Consensus       231 kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  310 (672)
T PHA02730        231 RDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLID  310 (672)
T ss_pred             CCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchh
Confidence            89999999995  556678999999999                                3333211             


Q ss_pred             ------cCCCCCCh---------------------HHHHHHhCC---CHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331          126 ------TFDSSNTT---------------------ALHTASSQG---HVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (537)
Q Consensus       126 ------~~d~~g~t---------------------pLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  175 (537)
                            ..+..|.+                     .||.=.+.+   +.+++++|+++|+++..  +..|.||||+|+..
T Consensus       311 ~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~  388 (672)
T PHA02730        311 VMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFVN  388 (672)
T ss_pred             hhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHH
Confidence                  12445543                     566656655   59999999999999864  37899999999988


Q ss_pred             Cc----HHHHHHHHhcCCC-CcccCCCCCChHHHH---HHhcC---------CHHHHHHHHhcCCcccccccCCCCcHHH
Q 009331          176 GH----LEIVKALLSKEPG-IVLRNDKKGQTALHM---AVKGQ---------SIELVDELVKVEPVIINMVDAKGNSALH  238 (537)
Q Consensus       176 g~----~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~---A~~~~---------~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh  238 (537)
                      ++    .+++++|+++|++ .....|..|.||||.   |...+         ..+++++|+. .++++|.+|..|+||||
T Consensus       389 nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh  467 (672)
T PHA02730        389 NNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLY  467 (672)
T ss_pred             cCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHH
Confidence            75    8999999999874 345558899999994   33332         2357999998 67779999999999999


Q ss_pred             HHHHhCcHHHHHHHhhhcCCCcccccC-CCCCHHHHHHHc--CChhHHHHHHhcCCCC
Q 009331          239 IATRKGRVQIVQKLLNINGVDKAVINK-SRETALDTAEKT--GHSEIGVILKEHGVPC  293 (537)
Q Consensus       239 ~A~~~~~~~iv~~Ll~~~g~~~~~~~~-~g~t~L~~A~~~--~~~~i~~~L~~~ga~~  293 (537)
                      +|+..++.+++++|++ .|++++..|. .|.||++.|+..  ++.+++++|+++|+..
T Consensus       468 ~Aa~~~~~eive~LI~-~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        468 YAVDVNNIQFARRLLE-YGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             HHHHhCCHHHHHHHHH-CCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            9999999999999998 7999999997 599999999874  7899999999999864

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.2e-27  Score=242.34  Aligned_cols=265  Identities=16%  Similarity=0.113  Sum_probs=181.0

Q ss_pred             ccCCCCCChHHHH-HHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHH-cCCHHHHHHHHHhCCccc------
Q 009331           18 LTAKRDDTPLQSL-VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE-YGYVDMVREMIRYHDTSL------   89 (537)
Q Consensus        18 ~~~~~~~t~Lh~A-~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~-~g~~~iv~~Ll~~~~~~~------   89 (537)
                      ..+-+|.+++|+- ...|++|+|+.|+++|++.      +.++..|.||||+|+. .|+.|++++|++.|++..      
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdv------N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g  139 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLEI------NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYG  139 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCCCc------ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccC
Confidence            3567788888754 4578999999999998874      4456778899999966 699999999999885411      


Q ss_pred             ----------------------------ccccCCCCChHHHHHHHcC-------CHHHHHHHHHhCChhhhcCCCCCChH
Q 009331           90 ----------------------------AGIKARNGYDAFHIAAKQG-------CLEVLKILMEALPELLMTFDSSNTTA  134 (537)
Q Consensus        90 ----------------------------~~~~~~~g~t~Lh~Aa~~g-------~~~iv~~Ll~~~~~~~~~~d~~g~tp  134 (537)
                                                  .+..+..|.||||+|+.++       +.|++++|++++++.... |..|.||
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~-d~~g~t~  218 (631)
T PHA02792        140 YKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY-TYREHTT  218 (631)
T ss_pred             cchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc-CCCCChH
Confidence                                        1234566899999999998       899999999999887765 7789999


Q ss_pred             HHHHHhCC--CHHHHHHHHHcCCCccc-----------------------------------------------------
Q 009331          135 LHTASSQG--HVEVVKFLLEKGSTLAT-----------------------------------------------------  159 (537)
Q Consensus       135 Lh~A~~~g--~~~iv~~Ll~~~~~~~~-----------------------------------------------------  159 (537)
                      ||+|+.+.  +.|+++.|++..-+...                                                     
T Consensus       219 l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~  298 (631)
T PHA02792        219 LYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSI  298 (631)
T ss_pred             HHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHH
Confidence            99999888  67777777653110000                                                     


Q ss_pred             -----------------------------------ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCC--CChH
Q 009331          160 -----------------------------------IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK--GQTA  202 (537)
Q Consensus       160 -----------------------------------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~--g~t~  202 (537)
                                                         ........+++.|+..|+.+++++|+++|+++... |..  +.||
T Consensus       299 ~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~k-D~~g~~~Tp  377 (631)
T PHA02792        299 LKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVED-DDNIINIMP  377 (631)
T ss_pred             HHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhh-cCCCCChhH
Confidence                                               00011234556666777777777777777665433 333  3567


Q ss_pred             HHHHHhcCCHH---HHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHH---
Q 009331          203 LHMAVKGQSIE---LVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEK---  276 (537)
Q Consensus       203 Lh~A~~~~~~~---~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~---  276 (537)
                      ||.|+.+...+   ++++|++ .++++|.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.|||++|..   
T Consensus       378 Lh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~  455 (631)
T PHA02792        378 LFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAH  455 (631)
T ss_pred             HHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHh
Confidence            77666554433   4555565 455567777777777777777777777777776 567777777777777777654   


Q ss_pred             cC-------ChhHHHHHHhcCCC
Q 009331          277 TG-------HSEIGVILKEHGVP  292 (537)
Q Consensus       277 ~~-------~~~i~~~L~~~ga~  292 (537)
                      .+       ..+++++|+++|..
T Consensus       456 ~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        456 ACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCC
Confidence            11       13456666666644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8.7e-26  Score=211.03  Aligned_cols=174  Identities=22%  Similarity=0.256  Sum_probs=109.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCC--CHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      +.||||.|+..|+.++++.|++..    ...|..|.||||+|+..+  +.+++++|+++|+++....+.+|.||||+|+.
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            455566666666666555555431    223555666666666533  56666666666666533323456666666554


Q ss_pred             C---CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh--cCCHHHHHHHHhcCCcccccccCCCCcHHHH-HHHhCcHHH
Q 009331          175 N---GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK--GQSIELVDELVKVEPVIINMVDAKGNSALHI-ATRKGRVQI  248 (537)
Q Consensus       175 ~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~-A~~~~~~~i  248 (537)
                      .   ++.+++++|+++++++.. .|..|.||||.|+.  .++.+++++|++ .+.+++.+|.+|+||||. |+..++.++
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~-~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITE-EDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            2   356666666666666543 46667777776654  356777777776 455667777777777774 455667777


Q ss_pred             HHHHhhhcCCCcccccCCCCCHHHHHHHc
Q 009331          249 VQKLLNINGVDKAVINKSRETALDTAEKT  277 (537)
Q Consensus       249 v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~  277 (537)
                      +++|++ .|++++.+|..|.|||++|...
T Consensus       175 v~~Ll~-~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        175 FDFLTS-LGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHH-cCCCCCCCCCCCCCHHHHHhhh
Confidence            777777 6777777777788888877654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.8e-25  Score=208.91  Aligned_cols=179  Identities=19%  Similarity=0.219  Sum_probs=153.9

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcC--CHHHHHHHHHhCChhhhcCCCCCChHH
Q 009331           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG--CLEVLKILMEALPELLMTFDSSNTTAL  135 (537)
Q Consensus        58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (537)
                      ....+.||||.|+..|+.+.|+.|++..     +..+..|.||||.|+..+  +.+++++|++.++++....+..|.|||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSAL   91 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHH
Confidence            3567789999999999999999999752     346788999999999854  899999999999988766446899999


Q ss_pred             HHHHhC---CCHHHHHHHHHcCCCcccccccCCCcHHHHHHH--CCcHHHHHHHHhcCCCCcccCCCCCChHHHH-HHhc
Q 009331          136 HTASSQ---GHVEVVKFLLEKGSTLATIARSNGKTALHSAAR--NGHLEIVKALLSKEPGIVLRNDKKGQTALHM-AVKG  209 (537)
Q Consensus       136 h~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~  209 (537)
                      |+|+..   ++.+++++|+++|+++ +..|.+|.||||.|+.  .++.+++++|++.+.++.. .|..|.||||. |+..
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~-~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc-ccCCCCcHHHHHHHhc
Confidence            998764   4799999999999998 5678999999999876  4689999999999988654 58999999996 5678


Q ss_pred             CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       210 ~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      ++.+++++|++ .+.+++.+|..|.||||+|..++
T Consensus       170 ~~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence            89999999998 56788999999999999998764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.8e-24  Score=224.93  Aligned_cols=265  Identities=14%  Similarity=0.070  Sum_probs=207.6

Q ss_pred             cCCCCCChHHHHHHcCCH----HHHHHHHhhCCchhHHHHHHcccCCCCcHHHH-HHHcCCHHHHHHHHHhCCccccccc
Q 009331           19 TAKRDDTPLQSLVRTGSV----ELVLDMISSYGDMELREMLSKMNQSGETALYV-AAEYGYVDMVREMIRYHDTSLAGIK   93 (537)
Q Consensus        19 ~~~~~~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~-Aa~~g~~~iv~~Ll~~~~~~~~~~~   93 (537)
                      +..++.||||.-.-+.+.    +++..|++..         +..|.+|.+++|+ |...|+.|+|++|+.+|+  +.+..
T Consensus        33 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GA--dvN~~  101 (631)
T PHA02792         33 YEYDGETPLKAYVTKKNNNIKNDVVILLLSSV---------DYKNINDFDIFEYLCSDNIDIELLKLLISKGL--EINSI  101 (631)
T ss_pred             cccCCCccHHHHHhhhhhhHHHHHHHHHHhCC---------CcCccCCccHHHHHHHhcccHHHHHHHHHcCC--Ccccc
Confidence            345677999988666552    2444444332         3457888899976 556899999999999874  45566


Q ss_pred             CCCCChHHHHHHH-cCCHHHHHHHHHhCChhh-----------------------------------hcCCCCCChHHHH
Q 009331           94 ARNGYDAFHIAAK-QGCLEVLKILMEALPELL-----------------------------------MTFDSSNTTALHT  137 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~-~g~~~iv~~Ll~~~~~~~-----------------------------------~~~d~~g~tpLh~  137 (537)
                      +..|.+|+|+|+. .++.|++++|++.|++..                                   +..|..|.||||+
T Consensus       102 ~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~  181 (631)
T PHA02792        102 KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYY  181 (631)
T ss_pred             cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHH
Confidence            7778999999976 699999999999986421                                   1235679999999


Q ss_pred             HHhCC-------CHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC--cHHHHHHHHhc---------------------
Q 009331          138 ASSQG-------HVEVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLEIVKALLSK---------------------  187 (537)
Q Consensus       138 A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~---------------------  187 (537)
                      |+..+       +.|+++.|+++|+++ +..|..|.||||+|+.+.  ..|+++.|++.                     
T Consensus       182 ~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~  260 (631)
T PHA02792        182 YIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRN  260 (631)
T ss_pred             HHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhcc
Confidence            99999       899999999999998 557888999999999887  56666666542                     


Q ss_pred             ----------------------------------------------------------------------CCCCcccCCC
Q 009331          188 ----------------------------------------------------------------------EPGIVLRNDK  197 (537)
Q Consensus       188 ----------------------------------------------------------------------~~~~~~~~d~  197 (537)
                                                                                            |.+..   ..
T Consensus       261 ~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~  337 (631)
T PHA02792        261 KNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RF  337 (631)
T ss_pred             CccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cC
Confidence                                                                                  21110   11


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCC--CcHHHHHHHhCcH---HHHHHHhhhcCCCcccccCCCCCHHH
Q 009331          198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG--NSALHIATRKGRV---QIVQKLLNINGVDKAVINKSRETALD  272 (537)
Q Consensus       198 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G--~T~Lh~A~~~~~~---~iv~~Ll~~~g~~~~~~~~~g~t~L~  272 (537)
                      .+.++++.|+..|+.+++++|++ .+++++.+|.+|  .||||+|+.....   +++++|++ .|++++.+|..|.||||
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh  415 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILY  415 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHH
Confidence            23466778999999999999999 577789999875  6999998877654   45788888 79999999999999999


Q ss_pred             HHHHcCChhHHHHHHhcCCCCCCCCCCc
Q 009331          273 TAEKTGHSEIGVILKEHGVPCGKSIKPQ  300 (537)
Q Consensus       273 ~A~~~~~~~i~~~L~~~ga~~~~~~~~~  300 (537)
                      +|+..++.+++++|+++|++.......+
T Consensus       416 ~Aa~~~n~eivelLLs~GADIN~kD~~G  443 (631)
T PHA02792        416 YCIESHSVSLVEWLIDNGADINITTKYG  443 (631)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999999999999876544433

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=5.9e-26  Score=189.37  Aligned_cols=112  Identities=37%  Similarity=0.517  Sum_probs=95.1

Q ss_pred             hhhhhhhcchhHHHHHHHHHHHhhhcccCCcccCCCCCCCCCCCCCCcccccCCC-ChhHHHHHHHHHHHHHHHHHHHHh
Q 009331          344 TEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKT-PFLIFIIFDSIALFISLAVVIVQT  422 (537)
Q Consensus       344 ~e~~~~~~~~~~~va~liatv~f~a~~~~Pgg~~~~~~~~~~~~~~g~~~~~~~~-~f~~f~~~~~~a~~~s~~~~~~~~  422 (537)
                      +||++++++++++||+|||||||||+|||||||||++     + +.|+|++.+++ .|++|+++|++||++|++++++++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~-----~-~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~   74 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDD-----D-DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI   74 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-----c-CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3688899999999999999999999999999999875     1 56999999777 899999999999999999999888


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Q 009331          423 SVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIV  461 (537)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  461 (537)
                      +.+....+.+.........+||+++.+|++||++|+|+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   75 SGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            423112233334566778899999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.4e-24  Score=218.10  Aligned_cols=186  Identities=18%  Similarity=0.110  Sum_probs=145.1

Q ss_pred             HHHHcCCHHHHHHHHHhCChhh------hcCCCCCChHHHHHHh--CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331          103 IAAKQGCLEVLKILMEALPELL------MTFDSSNTTALHTASS--QGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~------~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      +|+..+..|++++|+.++....      . .+..++|+||+++.  .|+.++|++|+++|+++..   .++.||+|.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~-~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIK-NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhh-ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHH
Confidence            7777888888888888877644      3 46668888888887  7888888888888888732   345778888888


Q ss_pred             CCcHHHHHHHHhcCCCCcccCC-----CCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHH
Q 009331          175 NGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV  249 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d-----~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv  249 (537)
                      .|+.+++++|+++|.+..+..+     ..+.+++|.|+.+++.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiV  237 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLV  237 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHH
Confidence            8888888888888764433221     236678888888888888888888 5667888888888888888888888888


Q ss_pred             HHHhhhcCCCcccccCCCCCHHHHHHHcCC--------hhHHHHHHhcCCCCC
Q 009331          250 QKLLNINGVDKAVINKSRETALDTAEKTGH--------SEIGVILKEHGVPCG  294 (537)
Q Consensus       250 ~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~--------~~i~~~L~~~ga~~~  294 (537)
                      ++|++ .|++++.+|..|.||||+|+..|+        .+++++|+++|++..
T Consensus       238 elLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        238 SWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            88887 688888888888888888888774        478888888887654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=3.3e-23  Score=230.33  Aligned_cols=236  Identities=20%  Similarity=0.236  Sum_probs=127.9

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHH-HHHHcCCHHHHHHHHHhCCcccccccCCCCCh
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALY-VAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~-~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (537)
                      ..++..++.|++.|+.+.++.+++....    ..++..|..|.|||| .|+.+++.++++.|++.+.      .+..|.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~----~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T   84 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKK----LNINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDT   84 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccc----cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChH
Confidence            4456677777777777777777776542    224455677777777 7777777777777777653      4556777


Q ss_pred             HHHHHHHcC---CHHHHHHHHHhCCh-----hh----hcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCc
Q 009331          100 AFHIAAKQG---CLEVLKILMEALPE-----LL----MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT  167 (537)
Q Consensus       100 ~Lh~Aa~~g---~~~iv~~Ll~~~~~-----~~----~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  167 (537)
                      |||.|+..+   ..++++.+.+.++.     ..    ...+..|.||||+|+..|+.+++++|+++|++++.. +. |..
T Consensus        85 ~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~-~~-~~~  162 (743)
T TIGR00870        85 LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR-AC-GDF  162 (743)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC-cC-Cch
Confidence            777777621   12223333332221     00    011235677777777777777777777777666321 10 000


Q ss_pred             HHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC---
Q 009331          168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG---  244 (537)
Q Consensus       168 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~---  244 (537)
                      ..                 ...  .......|+||||.|+..|+.+++++|++ ++.++|.+|..|+||||+|+..+   
T Consensus       163 ~~-----------------~~~--~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~~~~  222 (743)
T TIGR00870       163 FV-----------------KSQ--GVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFK  222 (743)
T ss_pred             hh-----------------cCC--CCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhhhhh
Confidence            00                 000  00011245566666666666666666665 34455666666666666666554   


Q ss_pred             ------cHHHHHHHhhhcCCC---c----ccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331          245 ------RVQIVQKLLNINGVD---K----AVINKSRETALDTAEKTGHSEIGVILKEH  289 (537)
Q Consensus       245 ------~~~iv~~Ll~~~g~~---~----~~~~~~g~t~L~~A~~~~~~~i~~~L~~~  289 (537)
                            ..++.+++++ .+.+   .    ++.|.+|.|||++|+..|+.+++++|++.
T Consensus       223 ~~~~~l~~~~~~~l~~-ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       223 AEYEELSCQMYNFALS-LLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             HHHHHHHHHHHHHHHH-HHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence                  1223333333 1111   2    44556666666666666666666666553

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.3e-24  Score=216.57  Aligned_cols=215  Identities=17%  Similarity=0.148  Sum_probs=178.7

Q ss_pred             HHHHcCCHHHHHHHHHhCCccc----ccccCCCCChHHHHHHH--cCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhC
Q 009331           68 VAAEYGYVDMVREMIRYHDTSL----AGIKARNGYDAFHIAAK--QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (537)
Q Consensus        68 ~Aa~~g~~~iv~~Ll~~~~~~~----~~~~~~~g~t~Lh~Aa~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (537)
                      +|+..+..|+++.|+.++...+    .-..+..++|+||.|+.  .|+.+++++|+++|+++..   .++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHc
Confidence            9999999999999999986543    10367779999999999  9999999999999999764   3458999999999


Q ss_pred             CCHHHHHHHHHcCCCccccc-----ccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHH
Q 009331          142 GHVEVVKFLLEKGSTLATIA-----RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD  216 (537)
Q Consensus       142 g~~~iv~~Ll~~~~~~~~~~-----~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  216 (537)
                      |+.+++++|+++|++.....     +..+.+++|.|+..++.+++++|++++++.. ..|..|.||||+|+.+|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN-~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN-QLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC-cCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999998543322     2347889999999999999999999999875 45899999999999999999999


Q ss_pred             HHHhcCCcccccccCCCCcHHHHHHHhCc--------HHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          217 ELVKVEPVIINMVDAKGNSALHIATRKGR--------VQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       217 ~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~--------~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      +|++ .+.++|.+|..|+||||+|+..|+        .+++++|++ .|++++.....+   +..  ...+.++++.+++
T Consensus       239 lLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~~~~---~~~--~~~n~~~ik~lI~  311 (437)
T PHA02795        239 WLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIKLAI---LNN--TIENHDVIKLCIK  311 (437)
T ss_pred             HHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchhHHh---hhc--ccchHHHHHHHHH
Confidence            9998 677899999999999999999984        699999998 788877654322   111  1125678888887


Q ss_pred             cCCCC
Q 009331          289 HGVPC  293 (537)
Q Consensus       289 ~ga~~  293 (537)
                      ++...
T Consensus       312 y~~~l  316 (437)
T PHA02795        312 YFMMV  316 (437)
T ss_pred             HHHhc
Confidence            76543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=2e-24  Score=220.26  Aligned_cols=248  Identities=28%  Similarity=0.371  Sum_probs=210.8

Q ss_pred             CChHHHHHHcCCHHHHHHHHhhCCchh-------HHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           24 DTPLQSLVRTGSVELVLDMISSYGDME-------LREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-------~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      .+-|-.|++.|+.+.+..+|+......       -+...+.+|.+|.|+||.|+.+|+.++++.|+++.+  ...+.+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea--~ldl~d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA--LLDLCDTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh--hhhhhhcc
Confidence            355889999999999999998653210       012245667899999999999999999999999753  44556688


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      |.+|||+|+.+|+.++++.++..+. ..+..+..|.||||.|+++||.+++.+|+.++++. .+.+..+.|+|..|++.|
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d-~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTD-ILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFG  159 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhccc-CCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhh
Confidence            9999999999999999999999884 44455889999999999999999999999999998 678899999999999999


Q ss_pred             cHHHHHHHHhcCCCC-------cccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHH
Q 009331          177 HLEIVKALLSKEPGI-------VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV  249 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv  249 (537)
                      ..++++.|++..-..       ...++..+-+|||.|+++|+.++++.|++ .+.++|....+| |+||-|+.+|..+++
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcchhh
Confidence            999999998762211       11234567789999999999999999999 677788777666 899999999999999


Q ss_pred             HHHhhhcCCCcccccCCCCCHHHHHHHcC
Q 009331          250 QKLLNINGVDKAVINKSRETALDTAEKTG  278 (537)
Q Consensus       250 ~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~  278 (537)
                      .+|++ -|++..++|.+|+|+|++....-
T Consensus       238 r~ll~-~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  238 RFLLE-IGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hHHHh-hccccccccccchHHHHHHHhcc
Confidence            99999 79999999999999999987753

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=9.5e-24  Score=234.61  Aligned_cols=149  Identities=21%  Similarity=0.239  Sum_probs=99.7

Q ss_pred             hhccCCCCCChHH-HHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHH----HHhCCccc-
Q 009331           16 KQLTAKRDDTPLQ-SLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREM----IRYHDTSL-   89 (537)
Q Consensus        16 ~~~~~~~~~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~L----l~~~~~~~-   89 (537)
                      .+..|..|.|||| .|+..++.++++.|++.+.          .+..|+||||.|+. |+.+.++.+    ...+.... 
T Consensus        45 in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----------~~~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~  113 (743)
T TIGR00870        45 INCPDRLGRSALFVAAIENENLELTELLLNLSC----------RGAVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGP  113 (743)
T ss_pred             CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----------CCCcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCc
Confidence            3445678999999 8999999999999998874          46789999999987 333333333    33321100 


Q ss_pred             -------ccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCC-------------CCCChHHHHHHhCCCHHHHHH
Q 009331           90 -------AGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFD-------------SSNTTALHTASSQGHVEVVKF  149 (537)
Q Consensus        90 -------~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-------------~~g~tpLh~A~~~g~~~iv~~  149 (537)
                             ....+..|.||||+|+.+|+.+++++|+++|+++....+             ..|.||||.|+..|+.+++++
T Consensus       114 ~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~l  193 (743)
T TIGR00870       114 LELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVAL  193 (743)
T ss_pred             hhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHH
Confidence                   011234699999999999999999999999988753211             235555555555555555555


Q ss_pred             HHHcCCCcccccccCCCcHHHHHHHCC
Q 009331          150 LLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus       150 Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      |+++|+++ +..|..|+||||.|+..+
T Consensus       194 Ll~~gadi-n~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       194 LSEDPADI-LTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HhcCCcch-hhHhhhhhHHHHHHHhhh
Confidence            55555554 344555555555555544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=3.3e-24  Score=188.20  Aligned_cols=249  Identities=24%  Similarity=0.264  Sum_probs=195.0

Q ss_pred             CCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHH
Q 009331           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (537)
Q Consensus        23 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (537)
                      ....++.++..|-.+--..+.....        .-++..|++-+-.|.+.|+.+++........+.. .-.+.+|.++++
T Consensus        31 q~a~~~~~~~m~~t~p~~~l~~~~s--------~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~-~~t~p~g~~~~~  101 (296)
T KOG0502|consen   31 QIAELFEQVEMGTTEPRCALTAEIS--------ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAI-DETDPEGWSALL  101 (296)
T ss_pred             HHHHHHHHhhccccchhHHHHHHHH--------HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCC-CCCCchhhhhhh
Confidence            3456777777777766666665432        2235667777888888898888887777544333 335666889999


Q ss_pred             HHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHH
Q 009331          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (537)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~  182 (537)
                      .|+-+|+.+.+...+.++...+.. +..+++|+.+++...+++.+..+.++..   +..|+.|.|||.+|+..|++++|+
T Consensus       102 v~ap~~s~~k~sttltN~~rgnev-s~~p~s~~slsVhql~L~~~~~~~~n~V---N~~De~GfTpLiWAaa~G~i~vV~  177 (296)
T KOG0502|consen  102 VAAPCGSVDKVSTTLTNGARGNEV-SLMPWSPLSLSVHQLHLDVVDLLVNNKV---NACDEFGFTPLIWAAAKGHIPVVQ  177 (296)
T ss_pred             hcCCCCCcceeeeeecccccCCcc-ccccCChhhHHHHHHHHHHHHHHhhccc---cCccccCchHhHHHHhcCchHHHH
Confidence            999889888888888887765544 7788899999998888888777766543   456888999999999999999999


Q ss_pred             HHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCccc
Q 009331          183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV  262 (537)
Q Consensus       183 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~  262 (537)
                      +|++.|+++... .+...++|.+|+..|..++|+.|+. .+.++|..|-+|-|||-+|++.++.++++.|++ .|++++.
T Consensus       178 fLL~~GAdp~~l-gk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~  254 (296)
T KOG0502|consen  178 FLLNSGADPDAL-GKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQ  254 (296)
T ss_pred             HHHHcCCChhhh-hhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCceeeeeecCChHHHHHHHHh-cCCCccc
Confidence            999998886544 5667889999999999999999998 566688999999999999999999999999998 7899999


Q ss_pred             ccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          263 INKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       263 ~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      .+..|++++++|...|+. +++..++
T Consensus       255 e~dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  255 EDDSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             ccccCCcHHHHHHHhhhH-HHHHHHH
Confidence            999999999999998887 4444433

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=2.6e-23  Score=212.16  Aligned_cols=231  Identities=27%  Similarity=0.331  Sum_probs=200.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCC-----------cccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHD-----------TSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT  132 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~-----------~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~  132 (537)
                      +=|.-|+..|+.+-+..|++...           ....+.+|.+|+|+||.|+.+|+.+++++|++..+-+.-. |..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~-d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC-DTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh-hccCc
Confidence            34678999999999999998632           2345567889999999999999999999999998766544 68999


Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      +|||+|+..|+.++++.|+.++..+ +.....|.||||.|+..||.+++.+|+.++.+.... |..+.|+|.+|++.|..
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~-nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIR-NNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCCcccc-CcccccHHHHHHHhhhh
Confidence            9999999999999999999999554 677888999999999999999999999999997755 78999999999999999


Q ss_pred             HHHHHHHhcCCc-------ccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHH
Q 009331          213 ELVDELVKVEPV-------IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI  285 (537)
Q Consensus       213 ~~v~~Ll~~~~~-------~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~  285 (537)
                      ++++.|++..-.       .-..++-.+-+|||+|+++|+.++++.|++ .|+++|...+.| |+||-|+.+|..+++.+
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaalcgk~evvr~  239 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAALCGKAEVVRF  239 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcchhhhH
Confidence            999999985210       123455678899999999999999999999 899999998877 99999999999999999


Q ss_pred             HHhcCCCCCCCCCC
Q 009331          286 LKEHGVPCGKSIKP  299 (537)
Q Consensus       286 L~~~ga~~~~~~~~  299 (537)
                      |++.|.........
T Consensus       240 ll~~gin~h~~n~~  253 (854)
T KOG0507|consen  240 LLEIGINTHIKNQH  253 (854)
T ss_pred             HHhhcccccccccc
Confidence            99999876554443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.6e-22  Score=225.98  Aligned_cols=179  Identities=26%  Similarity=0.292  Sum_probs=161.1

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  172 (537)
                      .+.++.++||.||..|+.++++.|++.+.+.+. .|..|.||||+|+..|+.+++++|+++|+++ +..|.+|.||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDI-GDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHH
Confidence            344567999999999999999999999988765 4999999999999999999999999999987 67899999999999


Q ss_pred             HHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL  252 (537)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  252 (537)
                      +..|+.++++.|++.+....   ...|.++||.|+.+|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            99999999999998765432   3567799999999999999999999 5677899999999999999999999999999


Q ss_pred             hhhcCCCcccccCCC-CCHHHHHHHcC
Q 009331          253 LNINGVDKAVINKSR-ETALDTAEKTG  278 (537)
Q Consensus       253 l~~~g~~~~~~~~~g-~t~L~~A~~~~  278 (537)
                      ++ .|++++..|..| .||++++....
T Consensus       675 l~-~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        675 IM-NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HH-cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            98 799999999988 89998886543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=6.3e-23  Score=180.13  Aligned_cols=243  Identities=25%  Similarity=0.338  Sum_probs=207.2

Q ss_pred             hhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccC
Q 009331           15 KKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA   94 (537)
Q Consensus        15 ~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   94 (537)
                      .....+..|+..+-.+.+.|+.+++...+.-.++.     ....+.+|.++++.|+-.|+.+.+..++.++..  .+..+
T Consensus        54 ~s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-----~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r--gnevs  126 (296)
T KOG0502|consen   54 ISALRNALGESLLTVAVRSGNSDVAVQSAQLDPDA-----IDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR--GNEVS  126 (296)
T ss_pred             HHHHHHhcCCcccchhhhcCCcHHHHHhhccCCCC-----CCCCCchhhhhhhhcCCCCCcceeeeeeccccc--CCccc
Confidence            34566788999999999999999999888776643     355678899999999999999999999987644  33456


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      -.+.+|+.+++...+++.+..+.+.   ..+..|..|.|||.+|+..|++++|++|++.|+++ ....+.-.++|..|++
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATR  202 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhc
Confidence            6789999999999988888777665   33455999999999999999999999999999998 5667777899999999


Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      .|..++|+.|+.++++++.. |.+|-|||-+|++.++.++++.|++ .+.+++..|..|++++.+|+..|+. +|+..++
T Consensus       203 ggytdiV~lLL~r~vdVNvy-DwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  203 GGYTDIVELLLTREVDVNVY-DWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             CChHHHHHHHHhcCCCccee-ccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-HHHHHHH
Confidence            99999999999999998765 8999999999999999999999999 6778999999999999999999987 7777777


Q ss_pred             hcCCCcccccCCCCCHHH
Q 009331          255 INGVDKAVINKSRETALD  272 (537)
Q Consensus       255 ~~g~~~~~~~~~g~t~L~  272 (537)
                       .-+..+.+|+.-.+|+|
T Consensus       280 -~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  280 -KHALKLCQDSEKRTPLH  296 (296)
T ss_pred             -HHHHHHhhcccCCCCCC
Confidence             34566777766666653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=4.8e-21  Score=214.27  Aligned_cols=178  Identities=21%  Similarity=0.290  Sum_probs=157.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      +..+.++||.||..|+.++++.|++.|.  +.+..|..|.||||+|+..|+.+++++|++++.++.. .|.+|.||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~--d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~-~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKL--DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC-cCCCCCCHHHHH
Confidence            4456799999999999999999999874  4667899999999999999999999999999888654 489999999999


Q ss_pred             HhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHH
Q 009331          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (537)
Q Consensus       139 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  218 (537)
                      +..|+.+++++|++.++..   ....|.++||.|+..|+.++++.|+++++++. ..|.+|.||||.|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin-~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD-SEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999887653   23557799999999999999999999999875 4589999999999999999999999


Q ss_pred             HhcCCcccccccCCC-CcHHHHHHHhC
Q 009331          219 VKVEPVIINMVDAKG-NSALHIATRKG  244 (537)
Q Consensus       219 l~~~~~~~n~~d~~G-~T~Lh~A~~~~  244 (537)
                      ++ .+.+++..|..| .||++++....
T Consensus       675 l~-~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        675 IM-NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HH-cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            98 667789999888 89998886543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.86  E-value=3e-22  Score=209.81  Aligned_cols=269  Identities=24%  Similarity=0.248  Sum_probs=193.7

Q ss_pred             hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR   95 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   95 (537)
                      ..++..+-.|+|..||+.|+.|+|+.|+.+|.+.      ..+|+.|.+||.+|+-.||..+|+.|++.+.+. ....|+
T Consensus       750 d~~Te~n~~t~LT~acaggh~e~vellv~rgani------ehrdkkgf~plImaatagh~tvV~~llk~ha~v-eaQsdr  822 (2131)
T KOG4369|consen  750 DPLTEPNIKTNLTSACAGGHREEVELLVVRGANI------EHRDKKGFVPLIMAATAGHITVVQDLLKAHADV-EAQSDR  822 (2131)
T ss_pred             ccccCccccccccccccCccHHHHHHHHHhcccc------cccccccchhhhhhcccCchHHHHHHHhhhhhh-hhhccc
Confidence            3455567788999999999999999999998764      445888999999999999999999998876433 234677


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccccc-ccCCCcHHHHHHH
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA-RSNGKTALHSAAR  174 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~g~tpL~~A~~  174 (537)
                      .+.|+|.+||..|..++|++||..+..-... +....|||..|...|..+++..|+..|..++... .+.|.+||..|..
T Consensus       823 tkdt~lSlacsggr~~vvelLl~~gankehr-nvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatm  901 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGRTRVVELLLNAGANKEHR-NVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATM  901 (2131)
T ss_pred             ccCceEEEecCCCcchHHHHHHHhhcccccc-chhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhh
Confidence            8888888888888888888888887765433 6677788888888888888888888887664433 2457778888888


Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHH---------------
Q 009331          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI---------------  239 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~---------------  239 (537)
                      +||.+.++.|++.+.+++.....+-+|+|-+|+-.|+.+++..||. ....+..+-+.|-|||.-               
T Consensus       902 ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa-~~anvehRaktgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  902 NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             ccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCccccchhhhh
Confidence            8888888888877777666555555666666666666666666665 223333444444444444               


Q ss_pred             --------------------HHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331          240 --------------------ATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG  294 (537)
Q Consensus       240 --------------------A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~  294 (537)
                                          ++..|+...+..|++ ..+.++++|++|.|+|-+|+..|+...+.+|++++++..
T Consensus       981 ~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln-~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen  981 AGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN-GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADAD 1054 (2131)
T ss_pred             cccccccCCCCCcCCccceeecCCCchhhhHHhhC-CccceecccCCCCcccchhccCCccccchHHhhcccChh
Confidence                                444444455555554 445566677888888888888888888888888887653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=2.6e-21  Score=182.08  Aligned_cols=163  Identities=31%  Similarity=0.413  Sum_probs=146.8

Q ss_pred             hcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC-----CcHHHHHHHHhcCCCCcccCCCCC
Q 009331          125 MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN-----GHLEIVKALLSKEPGIVLRNDKKG  199 (537)
Q Consensus       125 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~iv~~Ll~~~~~~~~~~d~~g  199 (537)
                      +..|.+|+|+||||++++++++|+.||+.|.......++-|+||+++|+..     .+.++|..|...+ +++..-...|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhc
Confidence            344899999999999999999999999999877788899999999998743     4577888888765 4455556889


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCC
Q 009331          200 QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGH  279 (537)
Q Consensus       200 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~  279 (537)
                      +|+|++|+.+|+.++++.||. .+.++|.+|.+|.|+|++|+.+|+.+++++||..+++|+...|.+|-|+|.+|...|+
T Consensus       341 QTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            999999999999999999999 7888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhc
Q 009331          280 SEIGVILKEH  289 (537)
Q Consensus       280 ~~i~~~L~~~  289 (537)
                      .||.-+|..+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            9998887654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.85  E-value=1.3e-21  Score=204.99  Aligned_cols=264  Identities=19%  Similarity=0.261  Sum_probs=184.1

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      ...|+.|.+||..|+-.||..+|+.|+....+.+     ...|+.++|+|-+||..|..++|+.||..+..  ...++..
T Consensus       784 ehrdkkgf~plImaatagh~tvV~~llk~ha~ve-----aQsdrtkdt~lSlacsggr~~vvelLl~~gan--kehrnvs  856 (2131)
T KOG4369|consen  784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-----AQSDRTKDTMLSLACSGGRTRVVELLLNAGAN--KEHRNVS  856 (2131)
T ss_pred             cccccccchhhhhhcccCchHHHHHHHhhhhhhh-----hhcccccCceEEEecCCCcchHHHHHHHhhcc--ccccchh
Confidence            4677888888888888888888888887765433     34567777788888877777877777776532  3335556


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCC-CCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccC-----------
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFD-SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN-----------  164 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-----------  164 (537)
                      .+|||.+|...|..++++.|+..|.+++.... ..|.+||..|...||.+.++.|++.|.+++.....+           
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq  936 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ  936 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc
Confidence            66777777777777777777777766554432 346667777777777777777776666664443334           


Q ss_pred             ----------------------CCcHHHHHHHCCcHHHHHHHHhcCCCCcccC-CCCCChHHHHHHhcCCHHHHHHHHhc
Q 009331          165 ----------------------GKTALHSAARNGHLEIVKALLSKEPGIVLRN-DKKGQTALHMAVKGQSIELVDELVKV  221 (537)
Q Consensus       165 ----------------------g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-d~~g~t~Lh~A~~~~~~~~v~~Ll~~  221 (537)
                                            |.|||..++..|.+|+-+.|+..|+|..... -....|+|-+++..|+...++.|+. 
T Consensus       937 gr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln- 1015 (2131)
T KOG4369|consen  937 GRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN- 1015 (2131)
T ss_pred             CcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC-
Confidence                                  4455555555555555555555554433221 1223345555556666666666665 


Q ss_pred             CCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331          222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  289 (537)
Q Consensus       222 ~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~  289 (537)
                      +..-+..++++|+|+|.+|+..|....+..|++ .++|++..|+...+++.-|.+.|+.+|+++....
T Consensus      1016 ~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~-~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1016 GDATVRVPNKKGCTVLWLASAGGALSSCPILVS-SVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             CccceecccCCCCcccchhccCCccccchHHhh-cccChhhhhcccccccHHHHHhchhheeccccCc
Confidence            444567888999999999999999999999999 7999999999999999999999999999876654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=6.7e-21  Score=188.62  Aligned_cols=232  Identities=22%  Similarity=0.314  Sum_probs=171.9

Q ss_pred             ChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHH
Q 009331           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (537)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (537)
                      -.+..|+..|+.+-++.|+..+..+      +..|.+|.|+||-++...+.+||++|++++  .+++..|..|+||||.|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~------~~~n~DglTalhq~~id~~~e~v~~l~e~g--a~Vn~~d~e~wtPlhaa  113 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASP------NLCNVDGLTALHQACIDDNLEMVKFLVENG--ANVNAQDNEGWTPLHAA  113 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCc------cccCCccchhHHHHHhcccHHHHHHHHHhc--CCccccccccCCcchhh
Confidence            3566788888888888888877654      455788888888888888888888888876  44566778888888888


Q ss_pred             HHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHCCcHHHHHH
Q 009331          105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLEIVKA  183 (537)
Q Consensus       105 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~  183 (537)
                      +..|+..+++++++.++++... |.+|..|+..+......++...-... |.++.......-.+-|        .++-.+
T Consensus       114 ascg~~~i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml--------~D~~q~  184 (527)
T KOG0505|consen  114 ASCGYLNIVEYLIQHGANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTML--------DDARQW  184 (527)
T ss_pred             cccccHHHHHHHHHhhhhhhhc-cCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHH--------HHHHHH
Confidence            8888888888888888877655 77777887776655555544443332 2111111111111111        123333


Q ss_pred             HHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccc
Q 009331          184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVI  263 (537)
Q Consensus       184 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~  263 (537)
                      + ..+.+.... +..|.|.||+|+.+|..++.++|++ .+..++.+|.+|+||||.|+..|+.++.++|++ +|++.+..
T Consensus       185 l-~~G~~~d~~-~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d~~  260 (527)
T KOG0505|consen  185 L-NAGAELDAR-HARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVE-HGADMDAK  260 (527)
T ss_pred             H-hcccccccc-ccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHH-hhcccchh
Confidence            3 355554444 4559999999999999999999999 566789999999999999999999999998888 79999999


Q ss_pred             cCCCCCHHHHHHHc
Q 009331          264 NKSRETALDTAEKT  277 (537)
Q Consensus       264 ~~~g~t~L~~A~~~  277 (537)
                      +..|.||+++|...
T Consensus       261 t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  261 TKMGETPLDVADEE  274 (527)
T ss_pred             hhcCCCCccchhhh
Confidence            99999999999874

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=2.6e-18  Score=178.37  Aligned_cols=212  Identities=23%  Similarity=0.279  Sum_probs=161.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCC-------cccccccCCCCChHHHHHHHc---CCHHHHHHHHHhCChhhhcC----CC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHD-------TSLAGIKARNGYDAFHIAAKQ---GCLEVLKILMEALPELLMTF----DS  129 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~-------~~~~~~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~~----d~  129 (537)
                      .++..|...|..+....++..+.       +-+.+.+...|.|+||.|..+   ++.++++.|++..|.+.+..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            67778888888887777776542       223444567899999999873   45689999999988765432    45


Q ss_pred             CCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhc
Q 009331          130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG  209 (537)
Q Consensus       130 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  209 (537)
                      .|.||||.|+.+.+.++|++|++.|+|+....-  |.  +..+-..+.   .+    ...+-.. .=..|+.||..||--
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~--G~--FF~~~dqk~---~r----k~T~Y~G-~~YfGEyPLSfAAC~  250 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARAC--GA--FFCPDDQKA---SR----KSTNYTG-YFYFGEYPLSFAACT  250 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhh--cc--ccCcccccc---cc----cccCCcc-eeeeccCchHHHHHc
Confidence            799999999999999999999999999732110  10  000000000   00    0000000 013588999999999


Q ss_pred             CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC--cccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331          210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD--KAVINKSRETALDTAEKTGHSEIGVILK  287 (537)
Q Consensus       210 ~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~--~~~~~~~g~t~L~~A~~~~~~~i~~~L~  287 (537)
                      ++.+++++|++ .+++++.+|.+|||.||..+.+-..++..++++ .|++  ..++|++|.|||.+|++.|+.++.+.++
T Consensus       251 nq~eivrlLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~il  328 (782)
T KOG3676|consen  251 NQPEIVRLLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHIL  328 (782)
T ss_pred             CCHHHHHHHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHHH
Confidence            99999999999 788899999999999999999999999999998 6888  8899999999999999999999999998


Q ss_pred             hc
Q 009331          288 EH  289 (537)
Q Consensus       288 ~~  289 (537)
                      +.
T Consensus       329 e~  330 (782)
T KOG3676|consen  329 ER  330 (782)
T ss_pred             Hh
Confidence            87

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=4.3e-20  Score=173.92  Aligned_cols=164  Identities=28%  Similarity=0.366  Sum_probs=148.0

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHh-----CCCHHHHHHHHHcCCCcccccccC
Q 009331           90 AGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS-----QGHVEVVKFLLEKGSTLATIARSN  164 (537)
Q Consensus        90 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~-----~g~~~iv~~Ll~~~~~~~~~~~~~  164 (537)
                      +++.|.+|+|+||+|+.++++++|+.||+.+.......|.-|.||+++|+.     ..+.++|..|...|.- +......
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-NaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-chhhhhh
Confidence            566789999999999999999999999999988888889999999999885     3468899999988743 3455677


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      |.|+|++|+..|+.++++.||..+++++.+ |.+|.|+|++|+++|+.|+++.||....+++..+|.+|.|+|.+|...|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            999999999999999999999999998765 8999999999999999999999999889999999999999999999999


Q ss_pred             cHHHHHHHhhh
Q 009331          245 RVQIVQKLLNI  255 (537)
Q Consensus       245 ~~~iv~~Ll~~  255 (537)
                      +.+|.-+|..+
T Consensus       419 h~eIa~mlYa~  429 (452)
T KOG0514|consen  419 HREIAVMLYAH  429 (452)
T ss_pred             chHHHHHHHHH
Confidence            99999888774

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=9.2e-19  Score=158.20  Aligned_cols=149  Identities=15%  Similarity=0.165  Sum_probs=73.8

Q ss_pred             CCCchhhhhhHHHHhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCC----HH
Q 009331            1 MEPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY----VD   76 (537)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~----~~   76 (537)
                      ||.|..+.=..+.  ....+..|.||||+|++.|+.++++.|+...........++.+|..|.||||+|+..|+    .+
T Consensus         1 ~~~~~~~~~~~~~--~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~   78 (169)
T PHA02741          1 MESPHFMTCLEEM--IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAE   78 (169)
T ss_pred             CCchhHHHHHHHH--hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHH
Confidence            4444444333332  12345556666666666666666665543221001112244555556666666666555    35


Q ss_pred             HHHHHHHhCCcccccccCC-CCChHHHHHHHcCCHHHHHHHHHh-CChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcC
Q 009331           77 MVREMIRYHDTSLAGIKAR-NGYDAFHIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG  154 (537)
Q Consensus        77 iv~~Ll~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  154 (537)
                      ++++|++.+.  +.+.++. .|.||||+|+..++.+++++|++. +.++. ..|..|+||||+|+..|+.+++++|++.+
T Consensus        79 ii~~Ll~~ga--din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         79 IIDHLIELGA--DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             HHHHHHHcCC--CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            5555555442  2233332 455555555555555555555542 33322 23555555555555555555555555543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=6e-19  Score=158.69  Aligned_cols=139  Identities=21%  Similarity=0.255  Sum_probs=75.2

Q ss_pred             CCCCChHHHHHHhCCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHH---HHHHHhcCCCCcccCCCCCC
Q 009331          128 DSSNTTALHTASSQGHV----EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI---VKALLSKEPGIVLRNDKKGQ  200 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i---v~~Ll~~~~~~~~~~d~~g~  200 (537)
                      +.++.++||.||+.|+.    +++++|.+.+..+ ...|.+|+||||+|+..|+.+.   +++|++.+.++....+..|.
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            33444555555555554    3344444444443 3345555555555555554332   45555555554332113566


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCC
Q 009331          201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRE  268 (537)
Q Consensus       201 t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~  268 (537)
                      ||||+|+..++.+++++|+...+.+++.+|..|+||||+|+..++.+++++|++ +|++++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            666666666666666666643445556666666666666666666666666665 5566665555543

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=1.2e-18  Score=157.57  Aligned_cols=133  Identities=20%  Similarity=0.309  Sum_probs=92.0

Q ss_pred             HHcccCCCCcHHHHHHHcCCHHHHHHHHHhC----CcccccccCCCCChHHHHHHHcCC----HHHHHHHHHhCChhhhc
Q 009331           55 LSKMNQSGETALYVAAEYGYVDMVREMIRYH----DTSLAGIKARNGYDAFHIAAKQGC----LEVLKILMEALPELLMT  126 (537)
Q Consensus        55 l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~----~~~~~~~~~~~g~t~Lh~Aa~~g~----~~iv~~Ll~~~~~~~~~  126 (537)
                      ++.+|..|.||||+|++.|+.++++.|+...    ...+.+.+|..|.||||+|+..|+    .+++++|++.++++...
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            4455777888888888888888888775431    123455567777777777777777    46777777777665543


Q ss_pred             CC-CCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCC
Q 009331          127 FD-SSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP  189 (537)
Q Consensus       127 ~d-~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  189 (537)
                       + ..|.||||+|+..++.+++++|++. +.++ ...|.+|.||||.|+..|+.++++.|++.+.
T Consensus        94 -~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         94 -EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             -CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence             4 3677777777777777777777763 6655 4566777777777777777777777776543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=1.5e-18  Score=171.96  Aligned_cols=218  Identities=23%  Similarity=0.361  Sum_probs=174.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (537)
                      -.+.-|+..|..+-|+.|+..+..  .+..+.+|.|+||.+|.-.+.+||++|+++++.++.. |..|+||||.|+..|+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~--~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~-d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGAS--PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQ-DNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCC--ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccc-ccccCCcchhhccccc
Confidence            356778899999999999998743  4678999999999999999999999999999998766 8999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH----HHHHHHH
Q 009331          144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI----ELVDELV  219 (537)
Q Consensus       144 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~----~~v~~Ll  219 (537)
                      ..++++|+.+|+++ ...+.+|..|+..+...-..+++..-...          .|.+ +-.+-+....    ++-.++.
T Consensus       119 ~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r----------~gi~-iea~R~~~e~~ml~D~~q~l~  186 (527)
T KOG0505|consen  119 LNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMAR----------QGID-IEAARKAEEQTMLDDARQWLN  186 (527)
T ss_pred             HHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHH----------hccc-HHHHhhhhHHHHHHHHHHHHh
Confidence            99999999999998 45677888888877655444444433322          1222 1111111111    2222332


Q ss_pred             hcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCC
Q 009331          220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP  299 (537)
Q Consensus       220 ~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~  299 (537)
                        .+...+..+..|.|+||.|+.+|..++.++|++ .|.+++++|.+|+||||.|+..|..+++++|.++|+++......
T Consensus       187 --~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~  263 (527)
T KOG0505|consen  187 --AGAELDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKM  263 (527)
T ss_pred             --ccccccccccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhc
Confidence              455667778779999999999999999999999 79999999999999999999999999999999999997655443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=1.6e-18  Score=155.87  Aligned_cols=135  Identities=24%  Similarity=0.316  Sum_probs=116.7

Q ss_pred             ccccCCCcHHHHHHHCCcH----HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHH---HHHHHhcCCccccccc-C
Q 009331          160 IARSNGKTALHSAARNGHL----EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL---VDELVKVEPVIINMVD-A  231 (537)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~---v~~Ll~~~~~~~n~~d-~  231 (537)
                      ..+.++.+++|.|++.|+.    +++++|.+.+... ...|..|+||||+|+..|+.+.   +++|++ .+.++|.+| .
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~~   92 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINARELG   92 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCCC
Confidence            3456788999999999998    5666677777664 3558899999999999988654   789998 567889998 5


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 009331          232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS  296 (537)
Q Consensus       232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~  296 (537)
                      .|+||||+|+..++.+++++|+...|++++.+|..|.|||++|...++.+++++|+++|+++...
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            89999999999999999999996579999999999999999999999999999999999987543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=2.3e-18  Score=153.38  Aligned_cols=140  Identities=17%  Similarity=0.202  Sum_probs=101.3

Q ss_pred             HhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHH---HHHHHHHhCCcccc
Q 009331           14 MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVD---MVREMIRYHDTSLA   90 (537)
Q Consensus        14 ~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~---iv~~Ll~~~~~~~~   90 (537)
                      ...+..|.+|.||||+||+.|+...+........+ ..+..+...|..|.||||+|+..|+.+   +++.|++.+.  +.
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~-~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga--di   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVTDLLAFKNAISD-ENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA--DI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcc-hhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC--Cc
Confidence            34566788899999999999984322221111111 112345667888999999999998864   6778888763  44


Q ss_pred             cccC-CCCChHHHHHHHcCCHHHHHHHHHh-CChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCc
Q 009331           91 GIKA-RNGYDAFHIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL  157 (537)
Q Consensus        91 ~~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  157 (537)
                      +.++ ..|.||||+|+..|+.+++++|++. +.++. ..|..|.||||+|+..|+.+++++|+++|++.
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5555 4788999999988899999888874 55544 44788888888888888888888888888654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=6.6e-18  Score=163.82  Aligned_cols=154  Identities=12%  Similarity=0.066  Sum_probs=105.5

Q ss_pred             CCCCCh-HHHHHHhCCCHHHHHHHHHcCCCcccc---cccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHH
Q 009331          128 DSSNTT-ALHTASSQGHVEVVKFLLEKGSTLATI---ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTAL  203 (537)
Q Consensus       128 d~~g~t-pLh~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  203 (537)
                      |..|.| +||.|+..|+.+++++|+++|+++...   .+..|.||||+|+..|+.+++++|+++|+++....+..|.|||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL  108 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence            444444 455566667777777777777776332   1356777788777777777777777777776544345677888


Q ss_pred             HHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHH
Q 009331          204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG  283 (537)
Q Consensus       204 h~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~  283 (537)
                      |.|+..++.+++++|++ .+.+++.+|.+|.||||+|+..++..++..+..   .   ..+..+.+|.+++   ++.+++
T Consensus       109 h~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        109 YISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALMICNNFLAFMICD---N---EISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC---C---cccccccChhhhh---ccHHHH
Confidence            88887788888888877 456677778888888888877777776654432   1   2355566777654   356777


Q ss_pred             HHHHhcCC
Q 009331          284 VILKEHGV  291 (537)
Q Consensus       284 ~~L~~~ga  291 (537)
                      ++|+.++.
T Consensus       179 ~~Lish~v  186 (300)
T PHA02884        179 KILVSHFI  186 (300)
T ss_pred             HHHHHHHH
Confidence            77777765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=2.4e-18  Score=153.23  Aligned_cols=97  Identities=24%  Similarity=0.339  Sum_probs=50.2

Q ss_pred             CCCCChHHHHHHhcCCH---HHHHHHHhcCCccccccc-CCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHH
Q 009331          196 DKKGQTALHMAVKGQSI---ELVDELVKVEPVIINMVD-AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL  271 (537)
Q Consensus       196 d~~g~t~Lh~A~~~~~~---~~v~~Ll~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L  271 (537)
                      |..|.||||+|+..|+.   +++++|++ .+.+++.+| .+|+||||+|+..++.+++++|+...|++++.+|..|.|||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL  130 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY  130 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHH-cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH
Confidence            44455555555554443   23444444 233445554 25555555555555555555555433555555555555555


Q ss_pred             HHHHHcCChhHHHHHHhcCCCC
Q 009331          272 DTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       272 ~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      ++|+..++.+++++|+++|+++
T Consensus       131 ~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        131 YVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC
Confidence            5555555555555555555543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.7e-17  Score=160.86  Aligned_cols=144  Identities=17%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCChhhhc---CCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCc
Q 009331          101 FHIAAKQGCLEVLKILMEALPELLMT---FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~---~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  177 (537)
                      ||.|+..|+.+++++|++.|+++...   .+..|.||||+|+..|+.+++++|+++|+++....+..|.||||.|+..|+
T Consensus        37 L~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~  116 (300)
T PHA02884         37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGC  116 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCC
Confidence            34444444455555555544443322   123455555555555555555555555555432223345555555555555


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       178 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      .+++++|++.+++... .|..|.||||.|+..++.+++..+..      +..+..+.+|++++   ++.++++.|+.
T Consensus       117 ~eivklLL~~GAdin~-kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~n~ei~~~Lis  183 (300)
T PHA02884        117 LKCLEILLSYGADINI-QTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---INFDILKILVS  183 (300)
T ss_pred             HHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---ccHHHHHHHHH
Confidence            5555555555554432 24455555555555554444433321      12344455555543   24566666665

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=8.2e-18  Score=142.77  Aligned_cols=145  Identities=28%  Similarity=0.315  Sum_probs=124.4

Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHH
Q 009331          134 ALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE  213 (537)
Q Consensus       134 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  213 (537)
                      -+.+|+..+....|+.||+..++..+.+|.+|.||||.|+.+|+.+|++.|+..+++.... ...|+||||.||+-++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~-T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK-TNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc-cccCccchhhhhcccchh
Confidence            4678888899999999999888888888999999999999999999999999888886654 578999999999999999


Q ss_pred             HHHHHHhcCCcccccccCCCCcHHHHHHHhCcH-HHHHHHhhhcCCCcccccCCCCCHHHHHHHcCCh
Q 009331          214 LVDELVKVEPVIINMVDAKGNSALHIATRKGRV-QIVQKLLNINGVDKAVINKSRETALDTAEKTGHS  280 (537)
Q Consensus       214 ~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~-~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~  280 (537)
                      ++.+|++ +++++|.......||||+|+..++. ..+.+|+...++++-.+++.+.||+++|.+.+-.
T Consensus       145 va~~LLq-hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  145 VAGRLLQ-HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHHh-ccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            9999998 6778899888889999999987654 5567777778899999999999999999887543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=1.9e-16  Score=134.54  Aligned_cols=143  Identities=24%  Similarity=0.314  Sum_probs=117.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHH
Q 009331          100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (537)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  179 (537)
                      -+-+|+..+.+.-|+.||+..+...+.+|.+|.||||-|+..|+.++|+.|+..|++. ......|+||||.||...+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4567888888888999999888888888999999999999999999999999999887 556678999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH-HHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI-ELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      ++..|+++++++... .....||||+|+...+. ..+.+|+.........++..+.||+.+|-+-+
T Consensus       145 va~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCccccc-ccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999987665 45678999999986665 45666666555556667788889999987654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2e-17  Score=151.24  Aligned_cols=135  Identities=29%  Similarity=0.406  Sum_probs=110.7

Q ss_pred             ccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHH
Q 009331          158 ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSAL  237 (537)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~L  237 (537)
                      .+..|..|.+|||+||+.|+..+++.|+.+|+.++.. +....||||+|+.+|+.++|+.|++ ...++|..++.|+|||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqkll~-~kadvnavnehgntpl  104 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccCCCch
Confidence            3566777888888888888888888888888776543 5566789999999999999999998 5677899999999999


Q ss_pred             HHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCC
Q 009331          238 HIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  295 (537)
Q Consensus       238 h~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~  295 (537)
                      |+||..|+.++.+-|+. .|+.+++.|++|.||++.|.-.-...+.+.-.++|..+++
T Consensus       105 hyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             hhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            99999999999999998 7999999999999999988654444455555566665543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1.6e-15  Score=157.89  Aligned_cols=196  Identities=21%  Similarity=0.228  Sum_probs=145.7

Q ss_pred             ChHHHHHHcCCHHHHHHHHhhCCchh---HHHHHHcccCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccccc---cCC
Q 009331           25 TPLQSLVRTGSVELVLDMISSYGDME---LREMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTSLAGI---KAR   95 (537)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~l~~~~~~g~t~L~~Aa~~---g~~~iv~~Ll~~~~~~~~~~---~~~   95 (537)
                      .++..|...|.++....++.......   .-..++++..-|+|.||.|.-+   ++.++++.|++..+....++   ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            67788888888888877776553211   1133556667799999999873   56689999999754222111   235


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhc--------CC--------------CCCChHHHHHHhCCCHHHHHHHHHc
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMT--------FD--------------SSNTTALHTASSQGHVEVVKFLLEK  153 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~--------~d--------------~~g~tpLh~A~~~g~~~iv~~Ll~~  153 (537)
                      .|.||||+|+.+.+.++|++|++.++++...        .|              ..|..||.+||..++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            6999999999999999999999998876321        11              2467788888888888888888888


Q ss_pred             CCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCC-CcccCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 009331          154 GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG-IVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (537)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  221 (537)
                      |+|+ +.+|.+|+|.||..+..-..++...+++.+++ ....+|..|.|||.+|++-|+.++.+.+++.
T Consensus       263 gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            8887 66788888888888877778888888888776 1223467788888888888888888888875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=5.4e-15  Score=118.44  Aligned_cols=89  Identities=46%  Similarity=0.656  Sum_probs=61.4

Q ss_pred             HHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHH
Q 009331          169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI  248 (537)
Q Consensus       169 L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~i  248 (537)
                      ||+|++.|+.+++++|++.+++...     |.||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHH
Confidence            5677777777777777776655432     6677777777777777777777 445667777777777777777777777


Q ss_pred             HHHHhhhcCCCccccc
Q 009331          249 VQKLLNINGVDKAVIN  264 (537)
Q Consensus       249 v~~Ll~~~g~~~~~~~  264 (537)
                      +++|++ .|++++.+|
T Consensus        75 ~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HHHHHH-TTT-TTSS-
T ss_pred             HHHHHH-cCCCCCCcC
Confidence            777777 577776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=2.4e-14  Score=121.82  Aligned_cols=122  Identities=37%  Similarity=0.614  Sum_probs=64.8

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      |..|.||||.|+..|+.+++++|++.+...  ...+..|.+|||.|+..++.+++++|++.++.... .+..|.||+|+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a   80 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-RDKDGNTPLHLA   80 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHH
Confidence            345556666666666666666666554222  33444555555555555555555555555543322 244555555555


Q ss_pred             HhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHH
Q 009331          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL  184 (537)
Q Consensus       139 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  184 (537)
                      +..++.+++++|++++.+. ...+..|.||++.|...++.+++++|
T Consensus        81 ~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            5555555555555555333 23344455555555555555555544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.58  E-value=4.1e-14  Score=120.39  Aligned_cols=122  Identities=43%  Similarity=0.702  Sum_probs=72.6

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (537)
                      |..|.||||+|+..|+.+++++|++.+.+. ...+..|.+|+|.|+..++.+++++|++.++... ..+..|.||+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHH
Confidence            455666666666666666666666666554 3445566666666666666666666666654332 22455566666666


Q ss_pred             hcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331          208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL  252 (537)
Q Consensus       208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  252 (537)
                      +.++.+++++|++ .+...+..|..|.||+|+|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            6666666666665 2334455555666666666666666665555

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=3e-14  Score=114.09  Aligned_cols=85  Identities=34%  Similarity=0.556  Sum_probs=38.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHH
Q 009331           66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVE  145 (537)
Q Consensus        66 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  145 (537)
                      ||.|++.|+.+++++|++.+.....      |+||||+|+..|+.+++++|++.+++.... |.+|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQ-DKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-B-STTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhccccccc-CCCCCCHHHHHHHcCCHH
Confidence            4455555555555555553311111      444555555555555555555544443322 444555555555555555


Q ss_pred             HHHHHHHcCCCc
Q 009331          146 VVKFLLEKGSTL  157 (537)
Q Consensus       146 iv~~Ll~~~~~~  157 (537)
                      ++++|+++|+++
T Consensus        74 ~~~~Ll~~g~~~   85 (89)
T PF12796_consen   74 IVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHTTT-T
T ss_pred             HHHHHHHcCCCC
Confidence            555555544443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.55  E-value=5.2e-15  Score=135.57  Aligned_cols=133  Identities=26%  Similarity=0.378  Sum_probs=89.2

Q ss_pred             HHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHH
Q 009331           70 AEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKF  149 (537)
Q Consensus        70 a~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  149 (537)
                      |+.|+.--|+..++.. ..+.+..|..|++|||+||+.|+..+++.|+.+|+.++.. |....||||+|+.+||.++|+.
T Consensus         8 cregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHH
Confidence            3444444444444432 2345566777777777777777777777777777766544 5666677777777777777777


Q ss_pred             HHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHH
Q 009331          150 LLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA  206 (537)
Q Consensus       150 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  206 (537)
                      |+...+++ +..+..|.||||+||..|.-.+.+-|+..|+.+... +++|.|||..|
T Consensus        86 ll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~ic-nk~g~tpldka  140 (448)
T KOG0195|consen   86 LLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNIC-NKKGMTPLDKA  140 (448)
T ss_pred             HHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceeeec-ccCCCCchhhh
Confidence            77777776 455667777777777777777777777776664433 56777777655

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=2.2e-12  Score=121.99  Aligned_cols=125  Identities=33%  Similarity=0.502  Sum_probs=78.7

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCc-----HHHHHHHHhcCC--CCcccCCCCCC
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH-----LEIVKALLSKEP--GIVLRNDKKGQ  200 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~iv~~Ll~~~~--~~~~~~d~~g~  200 (537)
                      +..+.+++|.++..+..+++++++..+.++ ...+.+|.||||.|+..|+     .++++.|++.+.  +.....|..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            444566666666666666666666666666 5566666666666666666     666666666666  44555566666


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       201 t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      ||||+|+..|+.++++.|++ .+..++..+..|.|+++.|+..++.++++.++.
T Consensus       149 tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         149 TPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             chhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            66666666666666666666 344455556666666666666666666666665

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=3.2e-12  Score=120.79  Aligned_cols=130  Identities=35%  Similarity=0.487  Sum_probs=121.0

Q ss_pred             cccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCC-----HHHHHHHHhcCC--cccccccC
Q 009331          159 TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-----IELVDELVKVEP--VIINMVDA  231 (537)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~~~--~~~n~~d~  231 (537)
                      ...+..+.++++.++..+..+++++++..+.+. ...+..|.||||+|+.+++     .++++.|++.+.  ...+.+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            345666899999999999999999999999998 6779999999999999999     999999999766  57888899


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      .|+||||+|+..|+.++++.|++ .|++++..+..|.|+++.|+..++.+++..+.+.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999 79999999999999999999999999999999976

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.32  E-value=4.6e-12  Score=96.50  Aligned_cols=104  Identities=22%  Similarity=0.298  Sum_probs=78.6

Q ss_pred             HHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHH
Q 009331          168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ  247 (537)
Q Consensus       168 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~  247 (537)
                      -+.+++++|.++-|+..+..+-+++..  ..|++|||+|+..|+.+++++|+. .+..++.+|+.|-|||.-|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHH
Confidence            356777888888888777777554433  467888888888888888888887 56667888888888888888888888


Q ss_pred             HHHHHhhhcCCCcccccCCCCCHHHHHH
Q 009331          248 IVQKLLNINGVDKAVINKSRETALDTAE  275 (537)
Q Consensus       248 iv~~Ll~~~g~~~~~~~~~g~t~L~~A~  275 (537)
                      +|++||+ .|++-.....+|.+.++.+.
T Consensus        82 cVklLL~-~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   82 CVKLLLQ-NGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHH-cCcccceeCCCchhHHhhcc
Confidence            8888887 68887777777777666543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.30  E-value=1.3e-11  Score=94.05  Aligned_cols=100  Identities=23%  Similarity=0.325  Sum_probs=69.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHH
Q 009331          100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (537)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  179 (537)
                      -+.+++++|.++-|+.....+-+++..  ..|++|||+|+-.|+.+++++|+..|+++ ...|+.|.|||..|+..||.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHH
Confidence            455677777777777777766444433  36777777777777777777777777776 456777777777777777777


Q ss_pred             HHHHHHhcCCCCcccCCCCCChHH
Q 009331          180 IVKALLSKEPGIVLRNDKKGQTAL  203 (537)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~L  203 (537)
                      +|++|++.+++-... ..+|.+.+
T Consensus        82 cVklLL~~GAdrt~~-~PdG~~~~  104 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIH-APDGTALI  104 (117)
T ss_pred             HHHHHHHcCccccee-CCCchhHH
Confidence            777777777765443 34555444

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.28  E-value=3.8e-12  Score=91.75  Aligned_cols=56  Identities=38%  Similarity=0.537  Sum_probs=31.7

Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHH
Q 009331          218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA  274 (537)
Q Consensus       218 Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A  274 (537)
                      |++.++.+++.+|..|+||||+|+.+|+.+++++|++ .|++++.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            4554557789999999999999999999999999995 8999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.7e-11  Score=121.27  Aligned_cols=115  Identities=28%  Similarity=0.282  Sum_probs=65.8

Q ss_pred             HHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHH
Q 009331           68 VAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVV  147 (537)
Q Consensus        68 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  147 (537)
                      -|+..|.+|+|+..+..-  .+....|..|.|+||-|+..||.+||++|++.+.+++.. |.+||||||+|++.++..++
T Consensus       556 DaaLeGEldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~-DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAA-DSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             hhhhcchHHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCc-cCCCCchhhhhhhcCchHHH
Confidence            355566666666665543  334445556666666666666666666666666655544 66666666666666666666


Q ss_pred             HHHHHcCCCcccccccCCCcHHHHHH--HCCcHHHHHHHH
Q 009331          148 KFLLEKGSTLATIARSNGKTALHSAA--RNGHLEIVKALL  185 (537)
Q Consensus       148 ~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll  185 (537)
                      +.|++.|+.+....-.++.|+..-+-  +.|..++.++|.
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            66666666554444455555544332  334455555554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.22  E-value=9.9e-11  Score=107.77  Aligned_cols=121  Identities=22%  Similarity=0.305  Sum_probs=81.0

Q ss_pred             CCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHH
Q 009331           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (537)
Q Consensus        23 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (537)
                      ...||..++..|+.+....||+..      +-++.+|..|.|+|..|+..|+.++|+.|++.|.+.+. .++..++||||
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~v------r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~-~qhg~~YTpLm   84 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTV------RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND-KQHGTLYTPLM   84 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHh------hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc-ccccccccHHH
Confidence            345677777777777777777652      23566677777777777777777777777777654332 24555677777


Q ss_pred             HHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHH
Q 009331          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL  151 (537)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  151 (537)
                      +|+.+|+.++.+.|++.|...... |.-|+|+-..|+.-|+.++|..+-
T Consensus        85 FAALSGn~dvcrllldaGa~~~~v-NsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARMYLV-NSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHcCCchHHHHHHhccCccccc-cchhhhHHHHHHHhcchHHHHHHh
Confidence            777777777777777776654433 666777777777777777666653

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.21  E-value=8.7e-11  Score=108.13  Aligned_cols=124  Identities=22%  Similarity=0.278  Sum_probs=110.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHh
Q 009331           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (537)
                      .-..||..++..|+.+-...|+..-  ...+..|.+|.++|..|+..|+.+++++|++.+.+++...+..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            3457899999999999999999852  45677899999999999999999999999999999998888999999999999


Q ss_pred             CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhc
Q 009331          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK  187 (537)
Q Consensus       141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  187 (537)
                      .|+.++.+.|++.|+.. ...+.-|+|+-..|+.-|+.++|..+-++
T Consensus        89 SGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999987 66788899999999999999999877544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.21  E-value=3.4e-11  Score=86.26  Aligned_cols=54  Identities=37%  Similarity=0.588  Sum_probs=27.0

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331          199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL  253 (537)
Q Consensus       199 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  253 (537)
                      |+||||.|+..|+.+++++|++. +.++|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            44555555555555555555553 4445555555555666655555555555553

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=4.3e-11  Score=118.37  Aligned_cols=120  Identities=23%  Similarity=0.264  Sum_probs=105.4

Q ss_pred             hHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHH
Q 009331           26 PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAA  105 (537)
Q Consensus        26 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  105 (537)
                      .|.-|+..|.+|+|+..+.+..|+      ...|..|-|+||-|+-.||.+||++||+.|  .+++..|.+|+||||+|+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp------SqpNdEGITaLHNAiCaghyeIVkFLi~~g--anVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP------SQPNDEGITALHNAICAGHYEIVKFLIEFG--ANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC------CCCCccchhHHhhhhhcchhHHHHHHHhcC--CcccCccCCCCchhhhhh
Confidence            466799999999999999987664      456899999999999999999999999987  567778999999999999


Q ss_pred             HcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH--hCCCHHHHHHHHHc
Q 009331          106 KQGCLEVLKILMEALPELLMTFDSSNTTALHTAS--SQGHVEVVKFLLEK  153 (537)
Q Consensus       106 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~  153 (537)
                      .+++..+++.|++.|+.+....-.++.|+...+-  ..|..+|.+||...
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999999999999887776778889887664  56888999999764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.20  E-value=4.4e-11  Score=85.66  Aligned_cols=52  Identities=46%  Similarity=0.762  Sum_probs=21.1

Q ss_pred             ChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHH
Q 009331          132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL  184 (537)
Q Consensus       132 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  184 (537)
                      +||||+|+..|+.+++++|+++|.++ +..|.+|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            44444444444444444444444443 22244444444444444444444444

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.12  E-value=5.6e-11  Score=85.61  Aligned_cols=56  Identities=36%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             HHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331          184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (537)
Q Consensus       184 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A  240 (537)
                      |+++++...+..|..|.||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            4566655556678889999999999999999999994 7888899999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.12  E-value=2.8e-10  Score=124.25  Aligned_cols=107  Identities=24%  Similarity=0.284  Sum_probs=78.7

Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      ++|+.|+..|+.+.++.|++.|+++ +..|.+|.||||+|+..|+.+++++|++.+++.. ..|..|.||||+|+.+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCcH
Confidence            4577788888888888888888776 4567778888888888888888888888877754 3477788888888888888


Q ss_pred             HHHHHHHhc------CCcccccccCCCCcHHHHHH
Q 009331          213 ELVDELVKV------EPVIINMVDAKGNSALHIAT  241 (537)
Q Consensus       213 ~~v~~Ll~~------~~~~~n~~d~~G~T~Lh~A~  241 (537)
                      +++++|++.      .+...+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            888888774      14445556666777655443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.06  E-value=7.6e-10  Score=120.88  Aligned_cols=105  Identities=29%  Similarity=0.327  Sum_probs=89.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      ..|+.|+..|+.++++.|++.+++++.. |..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            4689999999999999999999887654 899999999999999999999999999998 67899999999999999999


Q ss_pred             HHHHHHHhc-------CCCCcccCCCCCChHHHHH
Q 009331          179 EIVKALLSK-------EPGIVLRNDKKGQTALHMA  206 (537)
Q Consensus       179 ~iv~~Ll~~-------~~~~~~~~d~~g~t~Lh~A  206 (537)
                      +++++|+++       +.+.. ..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~-~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAK-PDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCC-ccccCCCCccchh
Confidence            999999998       44332 2345566665433

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.79  E-value=1.6e-08  Score=101.13  Aligned_cols=120  Identities=22%  Similarity=0.223  Sum_probs=89.5

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHH
Q 009331           27 LQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAK  106 (537)
Q Consensus        27 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~  106 (537)
                      +..|+..+++-.++.....+++      +-.++.+..|.||+|+..|+-|+|+++++++.....+..+..|.|+||.|+.
T Consensus       870 il~av~~~D~~klqE~h~~gg~------ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS------LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc------eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            5566777776666666555543      3345667778888888888888888888888777777777888888888888


Q ss_pred             cCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHc
Q 009331          107 QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK  153 (537)
Q Consensus       107 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  153 (537)
                      .++-.++++|++.++.+... |..|.||-.-|-..|+.++..||-.+
T Consensus       944 ~~~r~vc~~lvdagasl~kt-d~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKT-DSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcchHHHHHHHhcchhheec-ccCCCChHHHHHhcCCchHHHHHhhh
Confidence            88888888888888777655 77888888888888888877777543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.59  E-value=2e-07  Score=93.36  Aligned_cols=118  Identities=19%  Similarity=0.313  Sum_probs=100.1

Q ss_pred             HHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCC-cccccccCCCCcHHHHHHHhCcHH
Q 009331          169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP-VIINMVDAKGNSALHIATRKGRVQ  247 (537)
Q Consensus       169 L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~-~~~n~~d~~G~T~Lh~A~~~~~~~  247 (537)
                      +..|+..+.+--++.....+.+.... +.+..+.||+|++.|+-++|+|++++++ .+++..|..|.|+||-|+..++-.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            44556666655555555666665443 6788899999999999999999999775 478899999999999999999999


Q ss_pred             HHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       248 iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      +.++|++ .|+.....|..|.||-.-|.+.|+.++..+|..
T Consensus       949 vc~~lvd-agasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  949 VCQLLVD-AGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHh-cchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            9999998 799999999999999999999999999988864

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.57  E-value=5.5e-08  Score=95.67  Aligned_cols=94  Identities=24%  Similarity=0.317  Sum_probs=86.0

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHH
Q 009331          197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEK  276 (537)
Q Consensus       197 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~  276 (537)
                      .++...+.+|++.|....++.+.- .+.+++.+|.+.+|+||.|+..|+.+++++|++..+++++.+|..|+||||-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFAL-QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHH-hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            445678999999999999887776 5777899999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHhcCC
Q 009331          277 TGHSEIGVILKEHGV  291 (537)
Q Consensus       277 ~~~~~i~~~L~~~ga  291 (537)
                      .++.+++++|.++-.
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999999988643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=5.6e-08  Score=101.54  Aligned_cols=83  Identities=20%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             HHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccC-CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCCh
Q 009331           55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTT  133 (537)
Q Consensus        55 l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  133 (537)
                      .+..|..|+|+||+|+..|..+++++|+++|  .+...+| +.|+||||-|+..|++|++-.||.++..+.-. |.+|.+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhG--idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~-Dkegls  121 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHG--IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIK-DKEGLS  121 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcC--ceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEe-cccCCC
Confidence            4455556666666666666666666666654  2223333 34566666666666666666666666554332 556666


Q ss_pred             HHHHHHh
Q 009331          134 ALHTASS  140 (537)
Q Consensus       134 pLh~A~~  140 (537)
                      ||..-++
T Consensus       122 plq~~~r  128 (1267)
T KOG0783|consen  122 PLQFLSR  128 (1267)
T ss_pred             HHHHHhh
Confidence            6555544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.51  E-value=7.9e-08  Score=100.44  Aligned_cols=142  Identities=23%  Similarity=0.249  Sum_probs=89.3

Q ss_pred             HHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcc
Q 009331          146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI  225 (537)
Q Consensus       146 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  225 (537)
                      +--++-..+.+..++.|..|+|+||+|+..|..+++++|+++|.++.......|.||||-|+..|+.+.+-.|++ ++..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS-KGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh-cCCc
Confidence            344445556666677788888888888888888888888888887776655678888888888888888888887 4455


Q ss_pred             cccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHc--CChhHHHHHHhcC
Q 009331          226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKT--GHSEIGVILKEHG  290 (537)
Q Consensus       226 ~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~--~~~~i~~~L~~~g  290 (537)
                      +..+|++|..||...++-....+.-.+ . ..-|+-....+-+.-|-++...  .+++.+.++...|
T Consensus       112 L~i~Dkeglsplq~~~r~~~~~i~~~~-d-~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg  176 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSRVLSSTIHPVL-D-LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSG  176 (1267)
T ss_pred             eEEecccCCCHHHHHhhcccccccccc-C-CccceeEecccccccccccCCCCCCChHHhHHHHhcc
Confidence            677888888888777764333322111 1 1122222222222334443332  3456777666544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.47  E-value=5.1e-07  Score=89.36  Aligned_cols=82  Identities=29%  Similarity=0.415  Sum_probs=43.7

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCccccccc-CCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChh
Q 009331          203 LHMAVKGQSIELVDELVKVEPVIINMVD-AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE  281 (537)
Q Consensus       203 Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~  281 (537)
                      ||..++.|+.+..-.|+. -+++.|..+ ..|+||||.|++.|+.--+++|+- +|+|++..|.+|.||+++|...|+.+
T Consensus       137 LhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            555555555555544444 233344443 345555555555555555555554 45555555555556665555555555


Q ss_pred             HHHHH
Q 009331          282 IGVIL  286 (537)
Q Consensus       282 i~~~L  286 (537)
                      +.+-|
T Consensus       215 laeRl  219 (669)
T KOG0818|consen  215 LAERL  219 (669)
T ss_pred             HHHHH
Confidence            44433

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.44  E-value=3.2e-06  Score=83.91  Aligned_cols=153  Identities=18%  Similarity=0.240  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHH-------cC-------------CHHHHHHHHHhCCc-ccccc
Q 009331           34 GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE-------YG-------------YVDMVREMIRYHDT-SLAGI   92 (537)
Q Consensus        34 g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~-------~g-------------~~~iv~~Ll~~~~~-~~~~~   92 (537)
                      .++..|+.|-...-++.+-.+++..+.+|-+-+..-..       .|             ..+.++.-.+.-.- .....
T Consensus        43 rhIS~vrhLR~s~W~pt~l~~V~tLn~~gaNsIWEh~Lld~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~  122 (669)
T KOG0818|consen   43 RHISQVRHLRHTPWPPTLLQMVETLNNNGANSIWEHSLLDPATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPC  122 (669)
T ss_pred             chHHHHHHhccCCCCHHHHHHHHHHHhcCcchhhhhhccCchhhhcccCCCCCcCCCCccHHHHHHHHHHheeeeccCCC
Confidence            45677777766555555556666666666443332211       12             12333332221100 11233


Q ss_pred             cCCCCCh------HHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCC
Q 009331           93 KARNGYD------AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK  166 (537)
Q Consensus        93 ~~~~g~t------~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~  166 (537)
                      +|.+|-+      -||..++.|+.+..-.|+..|++.+......|.||||.|+..|+..-+++|+-.|+++ ...|.+|.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~Gm  201 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGM  201 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCC
Confidence            5555544      4999999999999999999999988877789999999999999999999999999998 66899999


Q ss_pred             cHHHHHHHCCcHHHHHHHHhc
Q 009331          167 TALHSAARNGHLEIVKALLSK  187 (537)
Q Consensus       167 tpL~~A~~~g~~~iv~~Ll~~  187 (537)
                      ||+.+|-..||-++.+.|++.
T Consensus       202 tP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHHH
Confidence            999999999999888877763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.42  E-value=2.9e-07  Score=56.56  Aligned_cols=29  Identities=41%  Similarity=0.775  Sum_probs=22.6

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHhhhcCCCcc
Q 009331          232 KGNSALHIATRKGRVQIVQKLLNINGVDKA  261 (537)
Q Consensus       232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~  261 (537)
                      +|+||||+|+..|+.+++++|++ .|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCC
Confidence            47788888888888888888887 577765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.39  E-value=3.9e-07  Score=57.61  Aligned_cols=33  Identities=36%  Similarity=0.627  Sum_probs=28.4

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccC
Q 009331          232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINK  265 (537)
Q Consensus       232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~  265 (537)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            58899999999999999999998 7888888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.37  E-value=8.8e-07  Score=89.35  Aligned_cols=91  Identities=31%  Similarity=0.329  Sum_probs=77.0

Q ss_pred             HHHHHhcCCHHHHHHHHhcCC---cccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCC
Q 009331          203 LHMAVKGQSIELVDELVKVEP---VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGH  279 (537)
Q Consensus       203 Lh~A~~~~~~~~v~~Ll~~~~---~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~  279 (537)
                      |..|+.......+..|+.++.   .+-...+.+|+|+||+|++.|+..+.++|++ +|+|+..+|..|+|+|.+|.+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhccc
Confidence            556777777777778887442   1223356788999999999999999999998 899999999999999999999999


Q ss_pred             hhHHHHHHhcCCCCC
Q 009331          280 SEIGVILKEHGVPCG  294 (537)
Q Consensus       280 ~~i~~~L~~~ga~~~  294 (537)
                      .+++..|+++|.+..
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999998753

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.36  E-value=4.5e-07  Score=89.37  Aligned_cols=90  Identities=29%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhC
Q 009331           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (537)
Q Consensus        62 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (537)
                      +..++.+|+..|++..++.+.-.+  .+....|.+.+|+||.||..|+.+++++|++.........|.+|+|||.-|...
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            344555555556555555544433  334445555555555555555555555555554444444455555555555555


Q ss_pred             CCHHHHHHHHHc
Q 009331          142 GHVEVVKFLLEK  153 (537)
Q Consensus       142 g~~~iv~~Ll~~  153 (537)
                      +|.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            555555555443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.32  E-value=6.7e-07  Score=54.90  Aligned_cols=27  Identities=48%  Similarity=0.861  Sum_probs=16.5

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCc
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTL  157 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~  157 (537)
                      |+||||+||+.|+.|++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            556666666666666666666665554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=1.8e-06  Score=86.71  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=78.0

Q ss_pred             ChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHH
Q 009331           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (537)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (537)
                      .|||+++...+.+-....+....    ...++..|..|+||||+|+..|+.+.++.|+..+  .+..++|..|++|||.|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~----~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~--Adv~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKV----SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG--ADVSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhh----hceeccccCCCCccHHHHHHhcCHHHHHHHHhcC--CCccccccccccHHHHH
Confidence            45999999999988887666542    2446788999999999999999999999999987  45677899999999999


Q ss_pred             HHcCCHHHHHHHHHhCCh
Q 009331          105 AKQGCLEVLKILMEALPE  122 (537)
Q Consensus       105 a~~g~~~iv~~Ll~~~~~  122 (537)
                      +..|+.+++..++.+...
T Consensus        96 v~~g~~q~i~~vlr~~~~  113 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHLKY  113 (560)
T ss_pred             HHcCCHHHHHHHHHHhHH
Confidence            999999999998887543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.21  E-value=1.1e-05  Score=86.00  Aligned_cols=127  Identities=16%  Similarity=0.228  Sum_probs=101.1

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChH
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA  100 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~  100 (537)
                      ..+.--...|+..|+.-.|+..++.....  +-.++..|.-|.++|+.|+.+.+.|++++|+++...        . ..+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~--~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~--------~-gdA   91 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVS--KLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE--------E-GDA   91 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhcccc--ccchhccChHhhhceecccccccHHHHHHHhcCccc--------c-chH
Confidence            34455677899999999999999987542  223677888999999999999999999999996411        1 468


Q ss_pred             HHHHHHcCCHHHHHHHHHhCChh---------hhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcc
Q 009331          101 FHIAAKQGCLEVLKILMEALPEL---------LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA  158 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  158 (537)
                      |-.|+..|..++|+.++.+....         ....-..+.|||..||..+++|+++.|+++|.++.
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999999999864321         11112456799999999999999999999998774

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.18  E-value=0.00056  Score=73.26  Aligned_cols=125  Identities=27%  Similarity=0.307  Sum_probs=101.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCc--ccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           61 SGETALYVAAEYGYVDMVREMIRYHDT--SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      .+.--...|+++|+.-.|+..++....  .+.+..|.-|.++|+.|..+.+.++.++|+++....        ..+|.+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHH
Confidence            344557789999999999999998655  456678899999999999999999999999885443        4589999


Q ss_pred             HhCCCHHHHHHHHHcCCCccc---------ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcc
Q 009331          139 SSQGHVEVVKFLLEKGSTLAT---------IARSNGKTALHSAARNGHLEIVKALLSKEPGIVL  193 (537)
Q Consensus       139 ~~~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~  193 (537)
                      +..|..++|+.++.+-.....         ..-..+.|||..||..+++||++.|+.++.....
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            999999999999987432210         1113467999999999999999999999877543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.08  E-value=8.6e-06  Score=82.03  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=72.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (537)
                      -|||.++-....+-...++........+..|..|.||||+|+..|+.+.++.|+..+++.... |..|++|||.|++.|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~k-N~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIK-NNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccc-ccccccHHHHHHHcCC
Confidence            358998888877766655443344456667888999999999999999999999998876654 8899999999999999


Q ss_pred             HHHHHHHHHcCC
Q 009331          144 VEVVKFLLEKGS  155 (537)
Q Consensus       144 ~~iv~~Ll~~~~  155 (537)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            888888877643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.07  E-value=5.5e-06  Score=52.28  Aligned_cols=27  Identities=41%  Similarity=0.772  Sum_probs=15.5

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCc
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTL  157 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~  157 (537)
                      |.||||+|+..|+.+++++|+++|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            555555555555555555555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.93  E-value=1.1e-05  Score=87.76  Aligned_cols=131  Identities=26%  Similarity=0.221  Sum_probs=102.2

Q ss_pred             HHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChH
Q 009331           55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA  134 (537)
Q Consensus        55 l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  134 (537)
                      ....+..|.+.||+++..++.-+++.+++. ........+.+|...+|+ |..++.+.+-++......-...+|..|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            345567789999999999999999999985 223444567788888888 556677777777776666667779999999


Q ss_pred             HHHHHhCCCHHHHHHHHHcCCCcccccc-----cCCCcHHHHHHHCCcHHHHHHHHhc
Q 009331          135 LHTASSQGHVEVVKFLLEKGSTLATIAR-----SNGKTALHSAARNGHLEIVKALLSK  187 (537)
Q Consensus       135 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-----~~g~tpL~~A~~~g~~~iv~~Ll~~  187 (537)
                      ||+|+..|+..++..|++.|++.....|     ..|.|+-..|..+|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999988776644333     3478888888888888887777665

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.89  E-value=3.5e-05  Score=78.12  Aligned_cols=88  Identities=24%  Similarity=0.261  Sum_probs=53.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhCChh---hhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCc
Q 009331          101 FHIAAKQGCLEVLKILMEALPEL---LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  177 (537)
                      |--|+...+...+-+||.++...   ....+.+|+|+||+||+.|+..+.++|+-+|.+. ...|..|+|+|.+|-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            34455555555566666555421   2222445667777777777777777776666665 5566667777777777777


Q ss_pred             HHHHHHHHhcCC
Q 009331          178 LEIVKALLSKEP  189 (537)
Q Consensus       178 ~~iv~~Ll~~~~  189 (537)
                      .+++..|+.+|.
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            777777666653

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.84  E-value=1.6e-05  Score=86.40  Aligned_cols=125  Identities=26%  Similarity=0.305  Sum_probs=99.8

Q ss_pred             ccCCCcHHHHHHHCCcHHHHHHHHhc-CCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331          162 RSNGKTALHSAARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (537)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A  240 (537)
                      .-.|++.+|.++..++.-+++.+++. +.. ....|..|...+|. |..+..+..-+++...+..++.+|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            44578999999999999999999986 333 23347788888888 5566677777777778888999999999999999


Q ss_pred             HHhCcHHHHHHHhhhcCCCc------ccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331          241 TRKGRVQIVQKLLNINGVDK------AVINKSRETALDTAEKTGHSEIGVILKEH  289 (537)
Q Consensus       241 ~~~~~~~iv~~Ll~~~g~~~------~~~~~~g~t~L~~A~~~~~~~i~~~L~~~  289 (537)
                      +.+|+..++..|+. .|++.      ...+-.|.|+-++|...|+..+..+|.+.
T Consensus       649 a~~G~e~l~a~l~~-lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIE-LGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHH-hccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999986 34432      23344689999999999999888877665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.79  E-value=2.2e-05  Score=85.99  Aligned_cols=90  Identities=29%  Similarity=0.403  Sum_probs=80.3

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHH
Q 009331          197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEK  276 (537)
Q Consensus       197 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~  276 (537)
                      ..|.++||.|+..+..-++++|++ .++++|..|..|+||||.+...|+...+..|++ +|++.++.+.+|++|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhh
Confidence            457899999999999999999999 566699999999999999999999999999998 899999999999999999988


Q ss_pred             cCChhHHHHHHh
Q 009331          277 TGHSEIGVILKE  288 (537)
Q Consensus       277 ~~~~~i~~~L~~  288 (537)
                      ..+.+++-++.-
T Consensus       732 ~~~~d~~~l~~l  743 (785)
T KOG0521|consen  732 AANADIVLLLRL  743 (785)
T ss_pred             hccccHHHHHhh
Confidence            866666555443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.70  E-value=5.3e-05  Score=73.11  Aligned_cols=75  Identities=19%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             ChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHH
Q 009331           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (537)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (537)
                      -.|.+||+.|+.+.|++|++.|.+      ++..|....+||++|+-.||.++|+.|+++|+.-  .....+|..+ |++
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC--~rdtf~G~RC-~Yg  108 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC--SRDTFDGDRC-HYG  108 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc--cccccCcchh-hhh
Confidence            358999999999999999998765      4677899999999999999999999999988432  2223455554 455


Q ss_pred             HHcC
Q 009331          105 AKQG  108 (537)
Q Consensus       105 a~~g  108 (537)
                      +.+.
T Consensus       109 aLnd  112 (516)
T KOG0511|consen  109 ALND  112 (516)
T ss_pred             hhhH
Confidence            5543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.63  E-value=0.0001  Score=64.74  Aligned_cols=67  Identities=31%  Similarity=0.190  Sum_probs=56.0

Q ss_pred             cccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       224 ~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      .++|.+|..|+|||+.|+..|+.+.+.||+.+.-+.+-+.|..|.+++.+|.+.|..+++..|.+.-
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            3578888888899988888888888888888433888888888888888888888888888888763

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.53  E-value=0.00013  Score=80.03  Aligned_cols=86  Identities=28%  Similarity=0.429  Sum_probs=63.5

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh
Q 009331          129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK  208 (537)
Q Consensus       129 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  208 (537)
                      ..|.|+||.|+..|..-++++|+++|+++ +..|..|++|+|.+...|+...+..+++++++.... +.+|..++++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~-~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF-DPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccccccc-CccCcchhhHHhh
Confidence            35678888888888888888888888775 667777888888888888888888888877765443 6778888888776


Q ss_pred             cCCHHHHH
Q 009331          209 GQSIELVD  216 (537)
Q Consensus       209 ~~~~~~v~  216 (537)
                      ..+.+++-
T Consensus       732 ~~~~d~~~  739 (785)
T KOG0521|consen  732 AANADIVL  739 (785)
T ss_pred             hccccHHH
Confidence            64444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.44  E-value=0.00042  Score=67.11  Aligned_cols=55  Identities=25%  Similarity=0.225  Sum_probs=35.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCCh
Q 009331           66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE  122 (537)
Q Consensus        66 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~  122 (537)
                      |..||+.|+.|.|+.|++.|  .+.+..|....+||.+|+..||.+++++|+++|+-
T Consensus        40 lceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            66666666666666666654  44455666666666666666666666666666653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.40  E-value=0.00036  Score=61.35  Aligned_cols=63  Identities=25%  Similarity=0.374  Sum_probs=43.9

Q ss_pred             cCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcC
Q 009331          126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE  188 (537)
Q Consensus       126 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  188 (537)
                      .+|..|+||++.|+..|+.+.+.||+.+|.......|..|.+.+.+|-+.|..+++..|.+..
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            446677777777777777777777777774444666777777777777777777777776653

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.00  E-value=0.052  Score=49.45  Aligned_cols=122  Identities=22%  Similarity=0.198  Sum_probs=78.1

Q ss_pred             HHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHH
Q 009331          135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL  214 (537)
Q Consensus       135 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  214 (537)
                      |--|+..-+++-+.-++....+        -.+++.+|+.++..+++.+|+.+..-          |.=.+|-......-
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~f----------t~~dv~~~~~~~yd  218 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNF----------TKQDVASMEKELYD  218 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcce----------ecchhhhcCcchhh
Confidence            4456655565555555443222        23566677777777777777765321          11112222223445


Q ss_pred             HHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCccc---ccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331          215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV---INKSRETALDTAEKTGHSEIGVILKEHGV  291 (537)
Q Consensus       215 v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~---~~~~g~t~L~~A~~~~~~~i~~~L~~~ga  291 (537)
                      +++++..+++                    +..++++.++++-+++|.   +-+.|.|.||-|.+.++.+++.+|+++||
T Consensus       219 ieY~LS~h~a--------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  219 IEYLLSEHSA--------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHhhcCC--------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            5666654433                    467888888866677775   35789999999999999999999999998


Q ss_pred             CCC
Q 009331          292 PCG  294 (537)
Q Consensus       292 ~~~  294 (537)
                      -..
T Consensus       279 ~~~  281 (284)
T PF06128_consen  279 ISG  281 (284)
T ss_pred             ccc
Confidence            654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.79  E-value=0.15  Score=45.15  Aligned_cols=138  Identities=17%  Similarity=0.207  Sum_probs=68.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (537)
                      ..|..|+..+...+++..-+.....     -..+++-+..||+..+.|+|+|+-+.-.-      .+-.+-+..|....+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccc
Confidence            3555666666666665554432110     12344556666666666666666333211      112233455555555


Q ss_pred             HHHHH----HHHHcCCCcccccc--cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHH
Q 009331          144 VEVVK----FLLEKGSTLATIAR--SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE  217 (537)
Q Consensus       144 ~~iv~----~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  217 (537)
                      .++..    .++++..+- ...|  .--..-|..|+.+|-.+.+...+++|.+...       ++|..|++.++..++.+
T Consensus       117 lsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~y  188 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDY  188 (192)
T ss_pred             hhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHH
Confidence            54311    111211110 0000  0001134567777777777777777665421       56777777777777766


Q ss_pred             HHh
Q 009331          218 LVK  220 (537)
Q Consensus       218 Ll~  220 (537)
                      ++.
T Consensus       189 fi~  191 (192)
T PF03158_consen  189 FIR  191 (192)
T ss_pred             hhc
Confidence            653

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=95.51  E-value=0.022  Score=33.19  Aligned_cols=25  Identities=52%  Similarity=0.838  Sum_probs=12.6

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCC
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGS  155 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~  155 (537)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.50  E-value=0.065  Score=54.30  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             hcCCHHHHHHHHhcCCc-----ccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHH
Q 009331          208 KGQSIELVDELVKVEPV-----IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE  275 (537)
Q Consensus       208 ~~~~~~~v~~Ll~~~~~-----~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~  275 (537)
                      +......+++|.++.-.     -+...|.--.|+||+|+..|..+++.+||+ .|+|+..+|..|.||.+++.
T Consensus       400 k~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  400 KKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence            34446677777774321     122344446799999999999999999999 67999999999999999987

>smart00248 ANK ankyrin repeats

Probab=95.47  E-value=0.022  Score=33.19  Aligned_cols=22  Identities=36%  Similarity=0.791  Sum_probs=13.5

Q ss_pred             CCcHHHHHHHhCcHHHHHHHhh
Q 009331          233 GNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       233 G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      |.||+|+|+..++.++++.|++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~   23 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLD   23 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH
Confidence            5566666666666666666665

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.83  E-value=0.31  Score=43.23  Aligned_cols=44  Identities=18%  Similarity=0.207  Sum_probs=20.0

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331          203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL  253 (537)
Q Consensus       203 Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  253 (537)
                      |..|+..|-...+...++.++. ++.      ++|-.|+..++-.++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~-~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGN-VDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCc-ccH------HHHHHHHHhhHHHHHHHhh
Confidence            3445555555555555543332 111      4455555555555544443

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.52  E-value=0.12  Score=52.42  Aligned_cols=64  Identities=17%  Similarity=0.117  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhCCcccccc----cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331           75 VDMVREMIRYHDTSLAGI----KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (537)
Q Consensus        75 ~~iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (537)
                      .+.+++|.+++...+...    .+.--.|+||+|+.+|.-++|.++|+.+.+.. ..|..|.||...+.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCcccccc
Confidence            567777777653332222    22235689999999999999999999996555 44999999998887

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=91.75  E-value=5.3  Score=39.75  Aligned_cols=230  Identities=10%  Similarity=0.072  Sum_probs=138.6

Q ss_pred             HHHhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCccc-c
Q 009331           12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSL-A   90 (537)
Q Consensus        12 ~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~-~   90 (537)
                      .++..-..|.+|.-.|..+...++.+....+++.-. +.+.+  -..|..|+-.+-.....+..+....+++.-.+.. .
T Consensus        10 ~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~-~~~~~--l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~   86 (322)
T cd07920          10 GHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEIL-PHVVE--LMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVR   86 (322)
T ss_pred             cchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHH-HhHHH--HhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345566788889999999999999988888888632 22222  2356788888888888887776655555321111 1


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHhC--ChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHc--CCCcccccccCCC
Q 009331           91 GIKARNGYDAFHIAAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEK--GSTLATIARSNGK  166 (537)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~g~  166 (537)
                      -..+..|.-.+..+...+..+-...+++.-  .-..-..|..|...+..+...+..+..+.+++.  +.-..-..+..|.
T Consensus        87 l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~  166 (322)
T cd07920          87 LSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGC  166 (322)
T ss_pred             HcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            225667777777777776654444444321  112223477888888888877766655555543  1111123355666


Q ss_pred             cHHHHHHHCCcHH----HHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcC-Ccc-cccccCCCCcHHHHH
Q 009331          167 TALHSAARNGHLE----IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE-PVI-INMVDAKGNSALHIA  240 (537)
Q Consensus       167 tpL~~A~~~g~~~----iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~-~~~-~n~~d~~G~T~Lh~A  240 (537)
                      ..+.........+    +++.+......  ...|..|...+..+.+.+..+..+.+++.- +.. .-..+..|...+..+
T Consensus       167 ~vvq~~l~~~~~~~~~~l~~~l~~~~~~--L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~  244 (322)
T cd07920         167 RVIQRCLEHCSEEQREPLLEEILEHALE--LVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKC  244 (322)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            6666666554433    33444433222  234678888888888888765444444421 111 124667888888888


Q ss_pred             HHhCcH
Q 009331          241 TRKGRV  246 (537)
Q Consensus       241 ~~~~~~  246 (537)
                      ...+..
T Consensus       245 l~~~~~  250 (322)
T cd07920         245 LKHASK  250 (322)
T ss_pred             HHHCCH
Confidence            777653

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.15  E-value=1.7  Score=39.87  Aligned_cols=47  Identities=13%  Similarity=0.264  Sum_probs=30.5

Q ss_pred             hHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 009331           26 PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYH   85 (537)
Q Consensus        26 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~   85 (537)
                      .|-.|+..-+.+.+..++....+             -.++|.+|..++..+++.+|+...
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd-------------A~~Am~~si~~~K~dva~~lls~f  202 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD-------------AHQAMWLSIGNAKEDVALYLLSKF  202 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH-------------HHHHHHHHhcccHHHHHHHHHhhc
Confidence            46667777777666666654321             235777777777777777777753

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.48  E-value=0.94  Score=34.47  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=24.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHc
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK  153 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  153 (537)
                      ..+..|+..|+.|+++.+++.+..     +   ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            445556666666666655543211     0   2345556666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.26  E-value=1.2  Score=33.85  Aligned_cols=49  Identities=18%  Similarity=0.212  Sum_probs=39.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhC
Q 009331           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL  120 (537)
Q Consensus        63 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~  120 (537)
                      ..-+..|+..|+.|+++.+++.+..         ...++..|+...+.+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~---------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP---------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc---------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            3467899999999999998875411         146799999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=87.01  E-value=21  Score=35.44  Aligned_cols=227  Identities=14%  Similarity=0.151  Sum_probs=128.6

Q ss_pred             HhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCC-cccccc
Q 009331           14 MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHD-TSLAGI   92 (537)
Q Consensus        14 ~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~-~~~~~~   92 (537)
                      +..-..|..|...+...+..+..+-...+++.-. ..+..  -..+..|.-.+--+...+..+....+++.-. ....-.
T Consensus        48 ~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~-~~~~~--l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~  124 (322)
T cd07920          48 VVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKIL-GHVVR--LSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELV  124 (322)
T ss_pred             HHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHH-HHHHH--HcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHh
Confidence            4455677778877877777777766666655431 11111  1356677777777777777655555554321 112223


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHhCC--hhhhcCCCCCChHHHHHHhCCCHH----HHHHHHHcCCCcccccccCCC
Q 009331           93 KARNGYDAFHIAAKQGCLEVLKILMEALP--ELLMTFDSSNTTALHTASSQGHVE----VVKFLLEKGSTLATIARSNGK  166 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~g~  166 (537)
                      .|..|...+..+...+..+..+.+++.-.  -..-..+..|...+.........+    +++.|...-.  .-..|..|.
T Consensus       125 ~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~--~L~~d~~Gn  202 (322)
T cd07920         125 KDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHAL--ELVQDQFGN  202 (322)
T ss_pred             hcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH--HHhcCCchh
Confidence            57788888888877777666555554321  112223667887777777765544    3444443322  234577888


Q ss_pred             cHHHHHHHCCcHHHH----HHHHhcCCCCcccCCCCCChHHHHHHhcCCHH----HHHHHHhcCC---c-ccccccCCCC
Q 009331          167 TALHSAARNGHLEIV----KALLSKEPGIVLRNDKKGQTALHMAVKGQSIE----LVDELVKVEP---V-IINMVDAKGN  234 (537)
Q Consensus       167 tpL~~A~~~g~~~iv----~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~----~v~~Ll~~~~---~-~~n~~d~~G~  234 (537)
                      ..+..+...+..+..    +.+.++...  ...++.|...+..+...+..+    +++.++....   . .-=..|..|+
T Consensus       203 ~vvq~~l~~~~~~~~~~i~~~l~~~~~~--l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn  280 (322)
T cd07920         203 YVVQHVLELGDPDDTSRIIEKLLGNIVQ--LSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGN  280 (322)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHH--HHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCccc
Confidence            888888888765533    333333222  234678888888887776533    4444443210   1 1113456666


Q ss_pred             cHHHHHHHhCcHH
Q 009331          235 SALHIATRKGRVQ  247 (537)
Q Consensus       235 T~Lh~A~~~~~~~  247 (537)
                      -.+..+.......
T Consensus       281 ~Viq~~l~~~~~~  293 (322)
T cd07920         281 YVIQTALDVAKEE  293 (322)
T ss_pred             HHHHHHHHhCCHH
Confidence            6666665555433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.17  E-value=2.6  Score=31.99  Aligned_cols=48  Identities=17%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q 009331          402 IFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVV  462 (537)
Q Consensus       402 ~f~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~~  462 (537)
                      +++++|.+||..|++.+.+-+..+|.+...+-             ..+|.++|..|+.+.+
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~w~KG-------------y~~MG~lfltgSt~tL   62 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWTKG-------------YWAMGILFLTGSTVTL   62 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHHHHHH-------------HHHHHHHHHhcchhhh
Confidence            45677999999999888888877777755432             3467778888876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	537
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-15
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-15
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-15
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-12
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-12
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-04
1uoh_A	226	Human Gankyrin Length = 226		2e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		6e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-09
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		8e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-08
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		6e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		8e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		8e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		3e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-06
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		5e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		5e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		5e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		5e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		5e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		9e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 44/310 (14%)
Query: 13  KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY 72
           K K    AK D TPL    R G   +V  ++ +  +  L         +G T L++AA  
Sbjct: 70  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL------ATTAGHTPLHIAARE 123
Query: 73  GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALP--------- 121
           G+V+ V  ++    +       + G+   H+AAK G + V ++L+E  A P         
Sbjct: 124 GHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 122 --------------ELLMTFDSS-------NTTALHTASSQGHVEVVKFLLEKGSTLATI 160
                         +LL+    S         T LH A+ Q  VEV + LL+ G + A  
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANA 240
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
               G T LH AA+ GH E+V  LLSK+    L N K G T LH+  +   + + D L+K
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLIK 299
Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280
              V+++     G + LH+A+  G +++V+ LL  +  D     K   + L  A + GH+
Sbjct: 300 -HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 281 EIGVILKEHG 290
           +I  +L ++G
Sbjct: 358 DIVTLLLKNG 367

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
           NG    H+AA+ G LEV+K+L+EA  ++    D +  T LH A+  GH+EVVK LLE G+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 156 TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV 215
            +    + NG+T LH AARNGHLE+VK LL     +  + DK G+T LH+A +   +E+V
Sbjct: 60  DVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 216 DELVK 220
             L++
Sbjct: 118 KLLLE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           NG+T LH AARNGHLE+VK LL     +  + DK G+T LH+A +   +E+V  L++   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG 283
             +N  D  G + LH+A R G +++V+ LL   G D    +K+  T L  A + GH E+ 
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 284 VILKEHG 290
            +L E G
Sbjct: 118 KLLLEAG 124

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 14/220 (6%)
Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIK----ARNGYDAFHIAAKQGCLEVLK 114
           +Q+  + L+ AAE G+VD+   +++      AG      + +       AA+   LE +K
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQ------AGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
            L++A   L+   D+  +T LH A+ +GH EVV++LL  G          G T +  A  
Sbjct: 62  YLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
             H+++VK LLSK   I +R D +    LH A     +++  E++      ++ V+  G+
Sbjct: 121 YKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGD 178
Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA 274
           S LHIA R+ R   V   L+ +  D  + NK  ET L  A
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDS-DVTLKNKEGETPLQCA 217

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 83/158 (52%), Gaps = 13/158 (8%)
Query: 104 AAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
           AA+ G  + +K L+E  A P      DS   T LH A+  GH E+VK LL KG+      
Sbjct: 11  AAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAK 66
Query: 162 RSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
            S+G+T LH AA NGH EIVK LLSK  +P      D  G+T LH A +    E+V +L+
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIV-KLL 122
Query: 220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
             +    N  D+ G + L +A   G  +IV KLL   G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIV-KLLEKQG 159

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRN 195
           A+  G+ + VK LLE G+     + S+G+T LH AA NGH EIVK LLSK  +P      
Sbjct: 11  AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
           D  G+T LH A +    E+V +L+  +    N  D+ G + LH A   G  +IV KLL  
Sbjct: 67  DSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV-KLLLS 124
Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            G D    +    T LD A + G+ EI  +L++ G
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
           NG    H+AA+ G LEV+K+L+EA  ++    D +  T LH A+  GH+EVVK LLE G+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 156 TLATIARSNGKTALHSAARNGHLEIVKALL 185
            +    + NG+T LH AARNGHLE+VK LL
Sbjct: 60  DVNAKDK-NGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           T LH A+  GH+EVVK LLE G+ +    + NG+T LH AARNGHLE+VK LL     + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVK 220
            + DK G+T LH+A +   +E+V  L++
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           NG+T LH AARNGHLE+VK LL     +  + DK G+T LH+A +   +E+V  L++   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-G 58
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLL 253
             +N  D  G + LH+A R G +++V+ LL
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
           G+T LH+A +   +E+V  L++     +N  D  G + LH+A R G +++V+ LL   G 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GA 59
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           D    +K+  T L  A + GH E+  +L E G
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L  AA  G  D VR  I   + +    K ++GY   H+AA++G LE++++L++A  + + 
Sbjct: 6   LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D    T LH A+ +GH+E+V+ LL+ G+ +      +G T LH AAR GHLEIV+ LL
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 186 SKEPGIVLRNDKKGQTALHMAVK 208
            K    V   DK G+T   +A++
Sbjct: 122 -KAGADVNAQDKFGKTPFDLAIR 143

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +      +G T LH AAR GHLEIV+ LL K    V   DK
Sbjct: 9   AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDK 66
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
            G T LH+A +   +E+V+ L+K     +N  D  G + LH+A R+G ++IV+ LL   G
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-G 124
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
            D    +K  +T  D A + GH +I  +L+
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 5/151 (3%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L  AA  G  D VR  I   + +    K ++GY   H+AA++G LE++++L++A  + + 
Sbjct: 18  LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 74
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D    T LH A+ +GH+E+V+ LL+ G+ +      +G T LH AAR GHLEIV+ LL
Sbjct: 75  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
            K    V   DK G+TA  +++   + +L +
Sbjct: 134 -KAGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +      +G T LH AAR GHLEIV+ LL K    V   DK
Sbjct: 21  AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDK 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
            G T LH+A +   +E+V+ L+K     +N  D  G + LH+A R+G ++IV+ LL   G
Sbjct: 79  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-G 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
            D    +K  +TA D +   G+ ++  IL+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 9/156 (5%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + +K L+E   ++  + DS   T LH A+  GH EVVK LL +G+       S
Sbjct: 11  AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 164 NGKTALHSAARNGHLEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +GKT LH AA NGH E+VK LLS+  +P      D  G+T LH+A +    E+V +L+  
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVV-KLLLS 124
Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
           +    N  D+ G + L +A   G  ++V KLL   G
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVV-KLLEKQG 159

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRN 195
           A+  G+ + VK LLE G+ +   + S+GKT LH AA NGH E+VK LLS+  +P      
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---K 66
Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
           D  G+T LH+A +    E+V +L+  +    N  D+ G + LH+A   G  ++V KLL  
Sbjct: 67  DSDGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV-KLLLS 124
Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            G D    +    T LD A + G+ E+  +L++ G
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G+ + VK L+E G+ +   + S+G+T LH AA+ GH EIVK L+SK   +  + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
            G+T LH A K    E+V +L+  +   +N  D+ G + LH A ++G  +IV KLL   G
Sbjct: 69  DGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV-KLLISKG 126
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            D    +    T LD A + G+ EI  +L++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L  AA  G  D VR  I   + +    K ++GY   H+AA++G LE++++L++A  ++  
Sbjct: 6   LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D    T LH A+ +GH+E+V+ LL+ G+ +    + +G T LH AAR GHLEIV+ LL
Sbjct: 64  K-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL 121
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
            K    V   DK G+T   +A+   + ++ + L K
Sbjct: 122 -KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 4/154 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L  A+  G  + V+ L+  G+ +    + +G T LH AAR GHLEIV+ LL K    V  
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL-KAGADVNA 63
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
            DK G T LH+A +   +E+V+ L+K     +N  D  G + LH+A R+G ++IV+ LL 
Sbjct: 64  KDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
             G D    +K  +T  D A   G+ +I  +L++
Sbjct: 123 A-GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 9/158 (5%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
           L  AA  G  D VR ++     + A + AR+  G+   H+AA  G LE++++L++   ++
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
               DS   T LH A+ +GH+E+V+ LL+ G+ +   + S+G T LH AA+ GHLEIV+ 
Sbjct: 74  -NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 132 LL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++    +  R D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N  D+ G + LH+A R+G ++IV+ LL  NG D    +    T L 
Sbjct: 61  EIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A K GH EI  +L ++G
Sbjct: 119 LAAKRGHLEIVEVLLKNG 136

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G+ + VK L+E G+ +   + S+G+T LH AA NGH E+VK L+SK   +  + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
            G+T LH A +    E+V +L+  +   +N  D+ G + LH A   G  ++V KLL   G
Sbjct: 69  DGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVV-KLLISKG 126
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            D    +    T LD A + G+ E+  +L++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++  T D+   T LH A+S GH+E+V+ LL+ G+ +   +  
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDL 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A K   +E+V+ L+K   
Sbjct: 79  TGITPLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKL 252
             +N  D  G +A  I+   G   + + L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +     ++G T LH AA NGHLEIV+ LL K    V  +D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDL 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
            G T LH+A     +E+V+ L+K     +N  D  G++ LH+A + G ++IV+ LL  +G
Sbjct: 79  TGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HG 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
            D    +K  +TA D +   G+ ++  IL+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D++ TT LH A+  GH+E+V+ LL+ G+ +   +  
Sbjct: 21  AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDV 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A K   +E+V+ L+K   
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
             +N  D  G +A  I+   G     +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V   D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGRKLLEAARAGQDDEVRILMANGAD-VNAADNTGTTPLHLAAYSGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     ++  D  G + LH+A   G ++IV+ LL  NG D   ++    T L 
Sbjct: 61  EIVEVLLK-HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A K G+ EI  +L +HG
Sbjct: 119 LAAKWGYLEIVEVLLKHG 136

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G+   H+AA  G LE++++L++   ++   +D+  +T LH A+  GH+E+V+ LL+ G+ 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
           +      NG T LH AA  GHLEIV+ LL K    V   DK G+TA  +++   + +L +
Sbjct: 106 V-NAKDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 217 ELVKV 221
            L K+
Sbjct: 164 ILQKL 168

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++    +    D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N  D  G++ LH+A   G ++IV+ LL  NG D    + +  T L 
Sbjct: 61  EIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A   GH EI  +L ++G
Sbjct: 119 LAANRGHLEIVEVLLKYG 136

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA  G  + ++ILM    ++  T D +  T LH A++ G +E+V+ LL+ G+ +   + S
Sbjct: 13  AAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDS 70
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA +GHLEIV+ LL K    V   D+ G T LH+A     +E+V+ L+K   
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKL 252
             +N  DA G +A  I+  +G+  + + L
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224
           GK  L +AA  G  + V+ L++     V   D  G T LH+A     +E+V+ L+K    
Sbjct: 7   GKKLLEAAAA-GQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLLK-NGA 63
Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
            +N  D+ G + LH+A   G ++IV+ LL  +G D    +++  T L  A  +G  EI  
Sbjct: 64  DVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 285 ILKEHG 290
           +L +HG
Sbjct: 123 VLLKHG 128

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D S  T LH A+ +GH+E+V+ LL+ G+ +   A  
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADK 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLL-KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY-G 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
             +N  D  G +A  I+   G     +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +      +GKT LH AA  GHLEIV+ LL K    V   DK
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADK 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
            G T LH+A     +E+V+ L+K     +N  D  G + LH+A   G ++IV+ LL   G
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY-G 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILKE 288
            D    +K  +TA D +   G+ ++  IL++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D   +T LH A+  GH E+V+ LL+ G+ +     +
Sbjct: 21  AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDT 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           +G T LH AA NGHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  DGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
             +N  D  G +A  I+   G     +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++    +   +D+ G T LH+A      
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHP 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N  D  G + LH+A   G ++IV+ LL   G D    +    T L 
Sbjct: 61  EIVEVLLK-HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A   GH EI  +L +HG
Sbjct: 119 LAADRGHLEIVEVLLKHG 136

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G+   H+AAK G LE++++L++   + +  +D+   T LH A+  GH+E+V+ LL+ G+ 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
           +       G T LH AA +GHLEIV+ LL K    V   DK G+TA  +++   + +L +
Sbjct: 106 V-NAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 217 ELVKV 221
            L K+
Sbjct: 164 ILQKL 168

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D+S  T LH A+  GH+E+V+ LL+ G+ +  +  +
Sbjct: 21  AARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T L  AA  GHLEIV+ LL K    V  ND +G T LH+A     +E+V+ L+K   
Sbjct: 80  -GMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
             +N  D  G +A  I+   G     +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++    +    D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N VD  G + L +A   G ++IV+ LL  NG D    +    T L 
Sbjct: 61  EIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A   GH EI  +L ++G
Sbjct: 119 LAAMFGHLEIVEVLLKNG 136

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
           L  AA  G  D VR ++     + A + A +  G+   H+AA  G LE++++L++   ++
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
               DS   T LH A+ +GH+EVV+ LL+ G+ +      NG T LH AA  GHLEIV+ 
Sbjct: 74  -NADDSLGVTPLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 132 LL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V  +D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNASDHVGWTPLHLAAYFGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N  D+ G + LH+A  +G +++V+ LL  NG D    + +  T L 
Sbjct: 61  EIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A   GH EI  +L +HG
Sbjct: 119 LAANIGHLEIVEVLLKHG 136

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++  T D+S  T LH A++ GH+E+V+ LL+ G+ +  I   
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
             +N  D  G +A  I+   G     +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V   D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N +D  G++ LH+A   G ++IV+ LL  +G D   ++   +T L 
Sbjct: 61  EIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A   GH EI  +L +HG
Sbjct: 119 LAAIMGHLEIVEVLLKHG 136

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +     + G T LH AAR GHLEIV+ LL K    V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNALDF 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
            G T LH+A K   +E+V+ L+K     +N  D  G++ LH+A   G ++IV+ LL   G
Sbjct: 79  SGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLKY-G 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
            D    +K  +TA D +   G+ ++  IL+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++  T D+S  T LH A++ GH+E+V+ LL+ G+ +  I   
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
             +N  D  G +A  I+   G     +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V   D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N +D  G++ LH+A   G ++IV+ LL  +G D   ++   +T L 
Sbjct: 61  EIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A   GH EI  +L +HG
Sbjct: 119 LAAIMGHLEIVEVLLKHG 136

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 73  GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME-ALPELLMTFDSSN 131
           G +D ++E I   D SLA    ++   A H A   G  E+++ L++  +P  +   D + 
Sbjct: 17  GKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAG 73
Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
            + LH A+S G  E+VK LL KG+ +  +   NG T LH AA     EI   LL      
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
             + D    TA+H A    ++++V  L+       N+ D +GN+ LH+A  + RV+   K
Sbjct: 133 DAK-DHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERVEEA-K 189
Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
            L   G    + NK  +T L  A K G   +G+ILK
Sbjct: 190 FLVTQGASIYIENKEEKTPLQVA-KGG---LGLILK 221

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 12/216 (5%)
Query: 73  GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME-ALPELLMTFDSSN 131
           G +D ++E I   D SLA    ++   A H A   G  E+++ L++  +P  +   D + 
Sbjct: 17  GKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAG 73
Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
            + LH A+S G  E+VK LL KG+ +  +   NG T LH AA     EI   LL      
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
             + D    TA+H A    ++++V  L+  +    N+ D +GN+ LH+A  + RV+   K
Sbjct: 133 DAK-DHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEA-K 189
Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
            L   G    + NK  +T L  A K G   +G+ILK
Sbjct: 190 FLVTQGASIYIENKEEKTPLQVA-KGG---LGLILK 221

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SKEP 189
           ++ LH A+  G  +++  LL+ G+  A    ++    LH A + GH ++VK LL  + +P
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV 249
               + D  G T L  A  G   ELV  L++     IN  + KGN+ALH A  +  V +V
Sbjct: 146 N---KKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVV 201
Query: 250 QKLLNINGVDKAVINKSRETALDTAEKT 277
           + LL ++G    V+NK + TA+D AE+ 
Sbjct: 202 ELLL-LHGASVQVLNKRQRTAVDCAEQN 228

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G    H+    G LE++++L++   ++  + D S  T LH A+ +GH+E+V+ LL+ G+ 
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
           +  +    G T LH AA +GHLEIV+ LL K    V   DK G+TA  +++   + +L +
Sbjct: 106 VNAMDYQ-GYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 217 ELVKV 221
            L K+
Sbjct: 164 ILQKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V  ND  G T LH+ V    +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNNGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+++ L+K     +N  D  G + LH+A  +G ++IV+ LL   G D   ++    T L 
Sbjct: 61  EIIEVLLKY-AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY-GADVNAMDYQGYTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A + GH EI  +L ++G
Sbjct: 119 LAAEDGHLEIVEVLLKYG 136

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 22/290 (7%)
Query: 19  TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMV 78
            A  D+  L   V+   V+LV  ++    ++  +E      + G T L+ A +    D+V
Sbjct: 21  AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIV 75
Query: 79  REMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
             ++R+    +  ++ +NG   F +AA  G +++LK+ +    ++    D    TA   A
Sbjct: 76  ELLLRHGADPV--LRKKNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEA 132
Query: 139 SSQGHVEVVKFLLEKGSTL---------ATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
           +  G V+ +KFL ++G+ +             R  G TAL  AA  GH+E++K LL +  
Sbjct: 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 190 GIVLRNDKKGQTALHMAV---KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
             V   D  G+ AL  A+       +E +  L+      +N+   +G + L +A  K  +
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG--VPCG 294
            +VQ+LL    ++    +   +TAL  A +    +I  +L + G    CG
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 302

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 22/290 (7%)
Query: 19  TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMV 78
            A  D+  L   V+   V+LV  ++    ++  +E      + G T L+ A +    D+V
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIV 55
Query: 79  REMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
             ++R+    +  ++ +NG   F +AA  G +++LK+ +    ++    D    TA   A
Sbjct: 56  ELLLRHGADPV--LRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEA 112
Query: 139 SSQGHVEVVKFLLEKGSTL---------ATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
           +  G V+ +KFL ++G+ +             R  G TAL  AA  GH+E++K LL +  
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 190 GIVLRNDKKGQTALHMAV---KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
             V   D  G+ AL  A+       +E +  L+      +N+   +G + L +A  K  +
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP--CG 294
            +VQ+LL    ++    +   +TAL  A +    +I  +L + G    CG
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 96  NGYDAF-----HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
           N YD +     H+AA  G LE++++L+    ++    D++ TT LH A+S GH+E+V+ L
Sbjct: 29  NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVL 87
Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           L+ G+ +     + G T L+ AA  GHLEIV+ LL K    V   DK G+TA  +++
Sbjct: 88  LKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFGKTAFDISI 142

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 178 LEIVKALLSKEPGIVLRN-------DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
           LE  +A    E  I++ N       D  G+T LHMA     +E+V+ L++     +N VD
Sbjct: 7   LEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVD 65
Query: 231 AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
             G + LH+A   G ++IV+ LL   G D    + +  T L  A   GH EI  +L +HG
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 125 MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS-NGKTALHSAARNGHLEIVKA 183
           M       T LH A+  GH E VK LL KG+ +   ARS +G T LH AA+NGH EIVK 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN--ARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
           LL+K   +  R+ K G T  H+A K    E           I+ ++DAKG
Sbjct: 61  LLAKGADVNARS-KDGNTPEHLAKKNGHHE-----------IVKLLDAKG 98

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           +G T LH+AA+NGH E VK LLSK   +  R+ K G T LH+A K    E+V +L+  + 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259
             +N     GN+  H+A + G  +IV KLL+  G D
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGAD 100

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256
           K G T LH A K    E V +L+  +   +N     GN+ LH+A + G  +IV KLL   
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIV-KLLLAK 64
Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
           G D    +K   T    A+K GH EI  +L   G 
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
           A  G LE LK  + A   L    D  + TALH A S GH E+V+FLL+ G  +       
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN----------------------------- 195
           G + LH AA  G  EIVKALL K   +   N                             
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 196 ---DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
              D    TA+H A    +++++  L+  +    N+ D +GN+ LH+A  + RV+   KL
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEA-KL 190
Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
           L   G    + NK  +T L  A K G   +G+ILK
Sbjct: 191 LVSQGASIYIENKEEKTPLQVA-KGG---LGLILK 221

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
           A  G LE LK  + A   L    D  + TALH A S GH E+V+FLL+ G  +       
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 73
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN----------------------------- 195
           G + LH AA  G  EIVKALL K   +   N                             
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 196 ---DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
              D    TA+H A    +++++  L+  +    N+ D +GN+ LH+A  + RV+   KL
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEA-KL 191
Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
           L   G    + NK  +T L  A K G   +G+ILK
Sbjct: 192 LVSQGASIYIENKEEKTPLQVA-KGG---LGLILK 222

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 7/209 (3%)
Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
           +L + +Q G   L+ +  +   ++   ++ +  + +L      +G+  FHIA   G LEV
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           +K L +  L   L    +   T LH A  +   EV +FL+E G+++    + N +  LH 
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AA  G L++++ L       V   DK+G T L  A+     +    LV+      ++VD 
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDK 260
           KG  A  +A  +   Q+ +  LN N VDK
Sbjct: 207 KGAKAEDVALNE---QVKKFFLN-NVVDK 231

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
           Q C+E    K+  L+ + P LL+  D      LH + S Q H E+  FLL K     L  
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
               +G T  H A   G+LE+VK+L  +     L+ D      +G T LH+AV  +  E+
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETAL 271
              L++     + + D      LH A   G +++++ L    G+ K+ +N   K   T L
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPL 178
Query: 272 DTAEKTGHSEIGVILKE 288
             A   GH +  V+L E
Sbjct: 179 FHALAEGHGDAAVLLVE 195

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILMEALPEL 123
           L  AA  G  D VR +I     + A + A    G    H+AA  G LE++++L++   ++
Sbjct: 18  LLEAARAGQDDEVRILI----ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
               D    T LH A+  GH+E+V+ LL+ G+ +     + G T LH AA  GHLEIV+ 
Sbjct: 74  DAA-DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT-GSTPLHLAADEGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
           LL K    V   DK G+TA  +++   + +L
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++    +    D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     ++  D  G + LH+A   G ++IV+ LL   G D    + +  T L 
Sbjct: 61  EIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
            A   GH EI  +L ++G
Sbjct: 119 LAADEGHLEIVEVLLKYG 136

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 13/205 (6%)
Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLK 114
           ++ + G++ L++A  +    +  E+IR     LA +  +N       H+A      E+ +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 115 ILMEA--LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST--LATIARS---NGKT 167
            L+ A   PEL    D    T LH A  QG +  V  L +  +T  L +I ++   NG T
Sbjct: 63  ALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN 227
            LH A+ +G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K     +N
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVN 178
Query: 228 MVDAKGNSALHIATRKGRVQIVQKL 252
            V  +G S   +   +   +I Q+L
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQL 203

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKI 115
           + + G++ L++A  +    +  E+IR     LA +  +N       H+A      E+ + 
Sbjct: 1   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 116 LMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST--LATIARS---NGKTA 168
           L+ A   PEL    D    T LH A  QG +  V  L +  +T  L +I ++   NG T 
Sbjct: 61  LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 117
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
           LH A+ +G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K     +N 
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNR 176
Query: 229 VDAKGNSALHIATRKGRVQIVQKL 252
           V  +G S   +   +   +I Q+L
Sbjct: 177 VTYQGYSPYQLTWGRPSTRIQQQL 200

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 41/209 (19%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  E  + L+EA  ++    D  N T LH A+    +++VK+ + KG+ +  +   
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 164 NGKTALHSAARNGHLEIVKALL--SKEPGIVLRNDKKGQTALHMA-------------VK 208
              T LH A R GHL +V  L+    +P ++   D +G + +H+A              K
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 209 GQSIELVDE------------LVKVEP--------VIINMVDA-KGNSALHIATRKGRVQ 247
           GQ ++++D+               V+P        V +N+ D    N+ALH A   G   
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEK 276
           ++  LL   G +    N   E+ALD A++
Sbjct: 192 VISLLLEA-GANVDAQNIKGESALDLAKQ 219

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 7/208 (3%)
Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
           +L + +Q G   L+ +  +   ++   ++ +  + +L      +G+  FHIA   G LEV
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           +K L +  L   L    +   T LH A  +   EV +FL+E G+++    + N +  LH 
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AA  G L++++ L       V   DK+G T L  A+     +    LV+      ++VD 
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVD 259
           KG  A  +A  +   Q+ +  LN N VD
Sbjct: 207 KGAKAEDVALNE---QVKKFFLN-NVVD 230

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
           Q C+E    K+  L+ + P LL+  D      LH + S Q H E+  FLL K     L  
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
               +G T  H A   G+LE+VK+L  +     L+ D      +G T LH+AV  +  E+
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETAL 271
              L++     + + D      LH A   G +++++ L    G+ K+ +N   K   T L
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPL 178
Query: 272 DTAEKTGHSEIGVILKE 288
             A   GH +  V+L E
Sbjct: 179 FHALAEGHGDAAVLLVE 195

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 6/203 (2%)
Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
           +L + +Q G   L+ +  +   ++   ++ +  + +L      +G+  FHIA   G LEV
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           +K L +  L   L    +   T LH A  +   EV +FL+E G+++    + N +  LH 
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AA  G L++++ L       V   DK+G T L  A+     +    LV+      ++VD 
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQIVQKLLN 254
           KG  A  +A  +   Q+ +  LN
Sbjct: 207 KGAKAEDVALNE---QVKKFFLN 226

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
           Q C+E    K+  L+ + P LL+  D      LH + S Q H E+  FLL K     L  
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
               +G T  H A   G+LE+VK+L  +     L+ D      +G T LH+AV  +  E+
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETAL 271
              L++     + + D      LH A   G +++++ L    G+ K+ +N   K   T L
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPL 178
Query: 272 DTAEKTGHSEIGVILKE 288
             A   GH +  V+L E
Sbjct: 179 FHALAEGHGDAAVLLVE 195

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK-------TALHSAARNGHLEI 180
           DS+  TALH + S  +  VV+ LL+ G  +  + + N         TAL +      +E 
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSG--VCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           V  L  +   I  +  + GQTAL +AV    +++V  L+  E   +N+ D  G++AL  A
Sbjct: 166 VLQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCA 223
Query: 241 TRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 286
              G  +I   LL +   D ++ ++   TAL  A   G SEI  +L
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  + ++ILM    ++    D +  T LH A+ +GH+E+V+ LL+ G+ +   + S
Sbjct: 21  ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDS 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            G+T LH AA  GHLEIV+ LL     +  + DK G+TA  +++   + +L + L K+
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SK 187
            ++ ++H  ++QG ++ +K  L KG  L       G T L  A+  G +E V+ LL    
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           +P I+    K+ ++AL +A  G   ++V  L++ + V IN+ D  G + L  A R   V+
Sbjct: 61  DPHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVK 116
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
            V+ LL   G D      S  T +D A   G+ ++  +++ H
Sbjct: 117 CVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  + ++ILM    ++    D +  T LH A+ +GH+E+V+ LL+ G   A +  S
Sbjct: 21  ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNAS 76
Query: 164 N--GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +  G+T LH AA  GHLEIV+ LL     +  + DK G+TA  +++   + +L + L K+
Sbjct: 77  DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  + ++ILM    ++    D +  T LH A+ +GH+E+V+ LL+ G+ +   AR 
Sbjct: 21  ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARD 77
Query: 164 -NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
             G+T LH AA  GHLEIV+ LL     +  + DK G+TA  +++   + +L + L K+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D    T LH A+   H+E+V+ LL+ G+ +     +
Sbjct: 21  AARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDN 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +G T LH AA  GHLEIV+ LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AAR G  + V+ L++     V  ND+KG T LH+A     +E+V+ L+K     +N  D 
Sbjct: 21  AARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDN 78
Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
            G++ LH+A   G ++IV+ LL  +G D    +K  +TA D +   G+ ++  IL++
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 8/223 (3%)
Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY--DAFHIAAKQGCLE 111
           M ++ ++ G+T L++A   G +  V  ++         +   N       H+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS--TLATIARS-NGKTA 168
           V+++L+ A     M  D    TA H A        ++ LL+  +  TL   AR+ +G TA
Sbjct: 61  VVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
           LH A      E V+ LL +   I   + K G++ L  AV+  S+ +V  L++     +N 
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNA 178
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
               G+SALH A+ +G + +V+ L+  +G D ++ N   +T L
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPL 220

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
           LH AA+ G+L  ++  L    G+    DK G TAL+ A  G   ++V+ L     + +N 
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
            +  G++ALH A  KG   IVQ LL   G    + N  ++ A D A  T  +   ++ K+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLL-AKGARTDLRNIEKKLAFDXA--TNAACASLLKKK 192
Query: 289 HGVPCGKSIKPQANSARELKQAVSDIK 315
            G     +++  +N+   L    SD++
Sbjct: 193 QGT---DAVRTLSNAEDYLDDEDSDLE 216

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SK 187
            ++ ++H  ++QG ++ +K  L KG  L       G T L  A+  G +E V+ LL    
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           +P I+    K+ ++AL +A  G   ++V  L++ + V IN+ D  G + L  A     V+
Sbjct: 61  DPHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVHGNHVK 116
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
            V+ LL   G D      S  T +D A   G+ ++  +++ H
Sbjct: 117 CVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G    HIA+ +G +  ++ L++   +  +  D +  T LH A + GH++VV+ LL+  + 
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLS 186
           + T    N  + LH AA+NGH++IVK LLS
Sbjct: 69  VNTTGYQN-DSPLHDAAKNGHVDIVKLLLS 97

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 36/130 (27%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           T LH AS +G +  V++LL+ GS    +    G T LH A  +GHL++V           
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVV----------- 59
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
                                   EL+     ++N    + +S LH A + G V IV+ L
Sbjct: 60  ------------------------ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Query: 253 LNINGVDKAV 262
           L+      AV
Sbjct: 96  LSYGASRNAV 105

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D    T LH A+   H+E+V+ LL+ G+ +  I  +
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DA 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            G+T LH  A  GHLEIV+ LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +    +  G T LH AA N HLEIV+ LL K    V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDA 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQIVQKL 252
            G+T LH+      +E+V+ L+K     +N  D  G +A  I+   G     +I+QKL
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           T LH A+  GH+E+V+ LL+ G+ +     + G+T LH AA   HLEIV+ LL K    V
Sbjct: 49  TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLL-KHGADV 106
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKV 221
              DK G+TA  +++   + +L + L K+
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ +L+     V  ND  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
           E+V+ L+K     +N     G + LH+A     ++IV+ LL  +G D    +K  +TA D
Sbjct: 61  EIVEVLLK-NGADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFD 118
Query: 273 TAEKTGHSEIGVILKE 288
            +   G+ ++  IL++
Sbjct: 119 ISIDNGNEDLAEILQK 134

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 5/190 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA Q   + +K +++     +   D+   T L+ A     +E+ K L+++G+ +      
Sbjct: 12  AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           +    L++ A+ G  EI+  +L      + ++++ G  AL  A +   I+ V  L++   
Sbjct: 72  SDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
Query: 224 VIINMVDAKGNSAL--HIATRKGR--VQIVQKLLNINGVDKAVINKSRETALDTAEKTGH 279
             I+  +  G +AL   +  R+G    Q + KLL  NG D+++ + S  TA+D A + G+
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190
Query: 280 SEIGVILKEH 289
           +EI  IL ++
Sbjct: 191 TEISKILAQY 200

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D    T L+ A++ GH+E+V+ LL+ G+ +  +  +
Sbjct: 21  AARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DA 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            G T LH AA  GHLEI + LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 29/250 (11%)
Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
           T L++AA Y  V +V+ ++++     A  K + G    H A   G  EV ++L++     
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNACSYGHYEVTELLLKH-GAC 116
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL-------------- 169
           +   D    T LH A+S+  VEV   LL  G+   T+   +GK+A+              
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTY 175
Query: 170 ----HS---AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG--QSIELVDELVK 220
               HS   AAR   L  VK  L+ E  I  +  +  +TALH AV       + V EL+ 
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLL 234
Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280
            +   +N  +    + LH+A  +    +++ +L+ +G     ++   +TAL  A   GH 
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 281 EIGVILKEHG 290
           +   +L  +G
Sbjct: 294 QTCRLLLSYG 303

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 76  DMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL 135
           +++R + R  D + A +   +G  A H A     ++++K L+E    +    D+     L
Sbjct: 55  EVLRLLERGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPL 110
Query: 136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL-------------HSAARNGHLEIVK 182
           H A+S G++++ ++L+ +G+ +  +  S G T L             +   R G    ++
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQG--VDIE 167
Query: 183 ALLSKEPGIVLR-----------ND----KKGQTALHMAVKGQSIELVDELVKVEPVIIN 227
           A   +E  I+LR           ND    K G TALH+A      E++  L++     +N
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVN 226
Query: 228 MVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEK 276
           + D  G + LH A   G+ +  + L+  N  D   +NK  +TA D A++
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE 274

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L +A+++G +E +  LL+    +       G+TAL    + G+ EI + LL +     L+
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
            D+ G   +H A +   ++ +  L++ +   +N+ D +GN  LH+A ++G +++V+ L+ 
Sbjct: 67  -DRTGNAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
               +    N   +TA D A   G +E+  +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 37/177 (20%)
Query: 99  DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA 158
           D      ++G    +++ ++     L   D    + LH A  +G   VV+ L+ +G+ + 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 159 TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
            + R +  T LH AA +GH +IV+ LL  +                              
Sbjct: 67  VMNRGD-DTPLHLAASHGHRDIVQKLLQYK------------------------------ 95
Query: 219 VKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE 275
                  IN V+  GN  LH A   G+ Q+ + L+  NG   ++ NK  E  +D A+
Sbjct: 96  -----ADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAK 146

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L +A+++G +E +  LL+    +       G+TAL    + G+ EI + LL +     L+
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
            D+ G   +H A +   ++ +  L++ +   +N+ D +GN  LH+A ++G +++V+ L+ 
Sbjct: 67  -DRTGFAVIHDAARAGQLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
               +    N   +TA D A   G +E+  +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRND 196
           A+  G  + V+ L+  G+ +A   + NG T LH AARNGHLE+VK LL  E G  V   D
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL--EAGADVXAQD 87
Query: 197 KKGQTALHMAVKGQSIELVD 216
           K G+TA  +++   + +L +
Sbjct: 88  KFGKTAFDISIDNGNEDLAE 107

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
           E+ L +AA+   V  + +++++    +   +   G  A HIAA    LE   +LMEA PE
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 123 LLMTFDSS----NTTALHTASSQGHVEVVKFLLEKGSTLATIARSN------------GK 166
           L+    +S      TALH A    +V +V+ LL +G++++  A  +            G+
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLR-NDKKGQTALHMAV 207
             L  AA  G  EIV+ L+  E G  +R  D  G T LH+ +
Sbjct: 123 HPLSFAACVGSEEIVRLLI--EHGADIRAQDSLGNTVLHILI 162

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 129 SSNTTA---LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
           S N+ A   L  A+  G VE VK L    S           T LH AA    + +V+ LL
Sbjct: 5   SGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
            +    V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+
Sbjct: 65  -QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGK 122
Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
            +I + LL  +G D    N+   T LD   K G ++I  +L+
Sbjct: 123 YEICKLLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +S     L  A+  G VE VK L    S           T LH AA    + +V+ LL +
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
               V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+ +
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
           I + LL  +G D    N+   T LD   K G ++I  +L+
Sbjct: 123 ICKLLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L +A+++G +E +  LL+    +       G+TAL    + G+ EI + LL +     L+
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
            D+ G   +H A +   ++ +  L++ +   +N+ D +GN  LH+A ++G +++V+ L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
               +    N   +TA D A   G +E+  +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L +A+++G +E +  LL+    +       G+TAL    + G+ EI + LL +     L+
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
            D+ G   +H A +   ++ +  L++ +   +N+ D +GN  LH+A ++G +++V+ L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
               +    N   +TA D A   G +E+  +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRND 196
           A+  G  + V+ L+  G+ +A   + NG T LH AARNGHLE+VK LL  E G  V   D
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL--EAGADVNAQD 69
Query: 197 KKGQTALHMAVKGQSIELVD 216
           K G+TA  +++   + +L +
Sbjct: 70  KFGKTAFDISIDNGNEDLAE 89

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +S     L  A+  G VE VK L    S           T LH AA    + +V+ LL +
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 67
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
               V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+ +
Sbjct: 68  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
           I + LL  +G D    N+   T LD   K G ++I  +L+
Sbjct: 127 ICKLLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV 249
           GI L N +  +  L  A K   +E V +L  V+ V    ++ + ++ LH A    RV +V
Sbjct: 4   GISLGNSEADRQLLE-AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 250 QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           + LL  +G D    +K     L  A   GH E+  +L +HG
Sbjct: 63  EYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 102

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 104 AAKQGCLEVLKILM-EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR 162
           AA+ G  + ++ILM    P    T D   T+ LH A+  GH    + LL  G  ++  AR
Sbjct: 9   AARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDAR 63
Query: 163 SN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           +   +T LH AA  GH  IV+ LL K    V   D    TALH A +    E+V+ L+K
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +  +   +G T LH AA+ GHLEIV+ LL K    V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAL-DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDN 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQIVQKL 252
            G T LH+A     +E+V+ L+K     +N  D  G +A  I+   G     +I+QKL
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L +A+++G +E +  LL+    +       G+TAL    + G+ EI + LL +     L+
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
            D+ G   +H A +   ++ +  L++ +   +N+ D +GN  LH+A ++G +++V+ L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLENQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
               +    N   +TA D A   G +E+  +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           TALH A   GH E+VKFL++ G  +   A S+G T LH AA   ++++ K L+     + 
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 193 LRNDKKGQTA 202
                  QTA
Sbjct: 131 AMTYSDMQTA 140

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           TALH A   GH E+VKFL++ G  +   A S+G T LH AA   ++++ K L+     + 
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 193 LRNDKKGQTA 202
                  QTA
Sbjct: 131 AMTYSDMQTA 140

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 37/148 (25%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D    + LH A  +G   VV+ L+ +G+ +  + R +  T LH AA +GH +IV+ LL  
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQY 89
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           +                                     IN V+  GN  LH A   G+ Q
Sbjct: 90  KAD-----------------------------------INAVNEHGNVPLHYACFWGQDQ 114
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAE 275
           + + L+  NG   ++ NK  E  +D A+
Sbjct: 115 VAEDLV-ANGALVSICNKYGEMPVDKAK 141

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D+S T+ +H A+  G ++ +K L+E G+ +  +    G   +H A + GH  +V  L ++
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
               + R D +G T L +A++  + +LVD L
Sbjct: 124 SD--LHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D+S T+ +H A+  G ++ +K L+E G+ +  +    G   +H A + GH  +V  L ++
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE 129
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
               + R D +G T L +A++  + +LVD L
Sbjct: 130 SD--LHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188
           + + + LH A   GH+  VK LL+ G+ +  +  ++  T L +A  +G  + V  LL   
Sbjct: 34  ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLLQH- 91
Query: 189 PGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
            G  ++ +    + +H A +   +E V+ L+     I + +   G + L++A    +   
Sbjct: 92  -GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRAC 149
Query: 249 VQKLLNINGVDKAVIN--KSRETALDTAEKTGHSEIGVILKEHG 290
           V+KLL  +G D   +N  K +++ L    +T   E+  +L + G
Sbjct: 150 VKKLLE-SGAD---VNQGKGQDSPLHAVARTASEELACLLMDFG 189

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
           V+   + +G++L       G+TALH AAR    +  K LL       ++ D  G+T LH 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 64
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
           AV   +  +   L++               P+I                    +N VD  
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
           G SALH A     V     LL  NG +K + N   ET L  A + G  E   +L +H
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
           V+   + +G++L       G+TALH AAR    +  K LL       ++ D  G+T LH 
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHA 61
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
           AV   +  +   L++               P+I                    +N VD  
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
           G SALH A     V     LL  NG +K + N   ET L  A + G  E   +L +H
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
           V+   + +G++L       G+TALH AAR    +  K LL       ++ D  G+T LH 
Sbjct: 39  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 97
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
           AV   +  +   L++               P+I                    +N VD  
Sbjct: 98  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 157
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
           G SALH A     V     LL  NG +K + N   ET L  A + G  E   +L +H
Sbjct: 158 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
           V+   + +G++L       G+TALH AAR    +  K LL       ++ D  G+T LH 
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
           AV   +  +   L++               P+I                    +N VD  
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
           G SALH A     V     LL  NG +K + N   ET L  A + G  E   +L +H
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
           +IN  D +G + L  A   G++ +V+ LL  NG D  ++ K RE+AL  A   G+++I  
Sbjct: 44  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVK 102
Query: 285 ILKEHGV 291
           +L + GV
Sbjct: 103 MLLDCGV 109

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
           +IN  D +G + L  A   G++ +V+ LL  NG D  ++ K RE+AL  A   G+++I  
Sbjct: 26  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVK 84
Query: 285 ILKEHGV 291
           +L + GV
Sbjct: 85  MLLDCGV 91

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L  A+  G  + V+ L+  G+ +      +G T LH AAR GHLEIV+ LL K    V  
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNA 63
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKV 221
            DK G+TA  +++   + +L + L K 
Sbjct: 64  QDKFGKTAFDISIDNGNEDLAEILQKA 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	537
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-52
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-50
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-50
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-49
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-42
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-48
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-48
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-47
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-46
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-38
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-46
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-45
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-45
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-39
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-44
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-44
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-41
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-43
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-06
2rfa_A	232	Transient receptor potential cation channel subfa	3e-42
2rfa_A	232	Transient receptor potential cation channel subfa	1e-33
2rfa_A	232	Transient receptor potential cation channel subfa	8e-20
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-41
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-39
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-39
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-39
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-39
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-38
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-37
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-37
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-35
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-36
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-35
2etb_A	256	Transient receptor potential cation channel subfam	3e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-32
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-32
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-22
2pnn_A	273	Transient receptor potential cation channel subfa	2e-33
2pnn_A	273	Transient receptor potential cation channel subfa	2e-30
2pnn_A	273	Transient receptor potential cation channel subfa	5e-28
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-30
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-29
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  178 bits (454), Expect = 1e-52
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 12/244 (4%)

Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLE 111
           M ++ ++ G+T L++A   G +  V  ++         +           H+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 112 VLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT---IARSNGK 166
           V+++L+   A P  L   D    TA H A        ++ LL+  +           +G 
Sbjct: 61  VVRLLVTAGASPMAL---DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVII 226
           TALH A      E V+ LL +   I   + K G++ L  AV+  S+ +V  L++     +
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANV 176

Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 286
           N     G+SALH A+ +G + +V+ L+  +G D ++ N   +T L  A      +I    
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

Query: 287 KEHG 290
               
Sbjct: 236 ATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.0 bits (183), Expect = 4e-15
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 16/134 (11%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L   V T   E V  ++    D++     +   +SG + L  A E   + MV+ ++++
Sbjct: 118 TALHVAVNTECQETVQLLLERGADID-----AVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 85  HDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A +  +  +G  A H A+ +G L +++ L+   A   L    +  N T L  A S
Sbjct: 173 G----ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK---NCHNDTPLMVARS 225

Query: 141 QGHVEVVKFLLEKG 154
           +  +++++    + 
Sbjct: 226 RRVIDILRGKATRP 239

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  174 bits (443), Expect = 1e-50
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 32/289 (11%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  D+  L   V+   V+LV  ++    ++       +  + G T L+ A +    D+V 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVN-----FQEEEGGWTPLHNAVQMSREDIVE 56

Query: 80  EMIRYHDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTAL 135
            ++R H    A    R  NG   F +AA  G +++LK+ +   A        D    TA 
Sbjct: 57  LLLR-HG---ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC---DFYGFTAF 109

Query: 136 HTASSQGHVEVVKFLLEKG---------STLATIARSNGKTALHSAARNGHLEIVKALLS 186
             A+  G V+ +KFL ++G                R  G TAL  AA  GH+E++K LL 
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 187 KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI-----INMVDAKGNSALHIAT 241
           +    V   D  G+ AL  A+       V+ +  +  ++     +N+   +G + L +A 
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHL--LLDHGADVNVRGERGKTPLILAV 227

Query: 242 RKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            K  + +VQ+LL    ++    +   +TAL  A +    +I  +L + G
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  102 bits (256), Expect = 2e-24
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           A       L  A +N  +++V+ LL     +  + ++ G T LH AV+    ++V+ L++
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280
                  +    G +   +A   G V++++  L+  G D    +    TA   A   G  
Sbjct: 61  HG-ADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKV 118

Query: 281 EIGVILKEHG 290
           +    L + G
Sbjct: 119 KALKFLYKRG 128

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  177 bits (451), Expect = 4e-50
 Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 25/272 (9%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G + +V +++       +       N   ET L++AA  G+ ++ + +++ 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHTEVAKYLLQN 69

Query: 85  HDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A +  KA++     H AA+ G   ++K+L+E  A P L     ++  T LH A+ 
Sbjct: 70  K----AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAR 122

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKK 198
           +GHVE V  LLEK ++        G T LH AA+ G + + + LL ++      N   K 
Sbjct: 123 EGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---NAAGKN 178

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
           G T LH+AV   ++++V  L+       +     G + LHIA ++ +V++ + LL   G 
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGG 236

Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
                +    T L  A + GH+E+  +L    
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  171 bits (436), Expect = 5e-48
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 15/236 (6%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
            ++G T L+VA  +  +D+V+ ++             A NGY   HIAAKQ  +EV + L
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRG----GSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ++                T LH A+ +GH E+V  LL K +    +   +G T LH  A+
Sbjct: 232 LQYGGSANAE---SVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQ 287

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GH+ +   L+     +     + G T LH+A    +I+LV  L++ +   +N     G 
Sbjct: 288 EGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGY 345

Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           S LH A ++G   IV  LL  NG     ++    T L  A++ G+  +  +LK   
Sbjct: 346 SPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  167 bits (425), Expect = 2e-46
 Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 15/236 (6%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
            +SG T L+VA+  G++ +V+ +++      A     N       H+AA+ G  EV K L
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRG----ASPNVSNVKVETPLHMAARAGHTEVAKYL 66

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ++  A           + T LH A+  GH  +VK LLE  +    +A + G T LH AAR
Sbjct: 67  LQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAR 122

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GH+E V ALL KE        KKG T LH+A K   + + + L++ +    N     G 
Sbjct: 123 EGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGL 180

Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           + LH+A     + IV+ LL   G        +  T L  A K    E+   L ++G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (424), Expect = 2e-46
 Identities = 72/279 (25%), Positives = 122/279 (43%), Gaps = 29/279 (10%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           K D TPL    R G   +V  ++ +  +  L         +G T L++AA  G+V+ V  
Sbjct: 78  KDDQTPLHCAARIGHTNMVKLLLENNANPNLA------TTAGHTPLHIAAREGHVETVLA 131

Query: 81  MIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALH 136
           ++       A        G+   H+AAK G + V ++L+E  A P        +  T LH
Sbjct: 132 LLEKE----ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLH 184

Query: 137 TASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
            A    ++++VK LL +G    +      NG T LH AA+   +E+ ++LL         
Sbjct: 185 VAVHHNNLDIVKLLLPRG---GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--- 238

Query: 195 N--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
           N    +G T LH+A +    E+V  L+  +    N+ +  G + LH+  ++G V +   L
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
           +  +GV      +   T L  A   G+ ++   L +H  
Sbjct: 298 IK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  150 bits (381), Expect = 3e-40
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
               +G    H+A+  G L ++K L++  A P      +    T LH A+  GH EV K+
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAKY 65

Query: 150 LLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           LL+     A + A++   +T LH AAR GH  +VK LL       L     G T LH+A 
Sbjct: 66  LLQNK---AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAA 121

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR 267
           +   +E V  L++ E      +  KG + LH+A + G+V++ + LL           K+ 
Sbjct: 122 REGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNG 179

Query: 268 ETALDTAEKTGHSEIGVILKEHGV 291
            T L  A    + +I  +L   G 
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGG 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 6e-37
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 25/224 (11%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL    +   VE+   ++   G           +  G T L++AA+ G+ +MV  ++  
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAE------SVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A     N  G    H+ A++G + V  +L++   + +          T LH AS 
Sbjct: 268 Q----ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT---TRMGYTPLHVASH 320

Query: 141 QGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
            G++++VKFLL+     A +      G + LH AA+ GH +IV  LL             
Sbjct: 321 YGNIKLVKFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSD 376

Query: 199 GQTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIA 240
           G T L +A +   I + D L  V  E   + + D    S     
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.9 bits (219), Expect = 8e-19
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 24/167 (14%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL  + + G V +   +I     ++         + G T L+VA+ YG + +V+ ++++
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDAT------TRMGYTPLHVASHYGNIKLVKFLLQH 333

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A + A+   GY   H AA+QG  +++ +L++  A P  +    S  TT L  A  
Sbjct: 334 Q----ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV---SSDGTTPLAIAKR 386

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
            G++ V   L       + +  S+         R    E V  +L  
Sbjct: 387 LGYISVTDVLKVVTDETSFVLVSD-------KHRMSFPETVDEILDV 426

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
                  G + LH+A+  G + IV+ LL   G    V N   ET L  A + GH+E+   
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 286 LKEHG 290
           L ++ 
Sbjct: 66  LLQNK 70

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  170 bits (433), Expect = 1e-49
 Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 22/241 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
           +Q+  + L+ AAE G+VD+   +++       G      + +       AA+   LE +K
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQA------GANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 115 ILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
            L++  AL +     D+  +T LH A+ +GH EVV++LL  G          G T +  A
Sbjct: 62  YLIKAGALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 173 ARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
               H+++VK LLSK   I   N  D +    LH A     +++ + L+  +   ++ V+
Sbjct: 119 TEYKHVDLVKLLLSKGSDI---NIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVN 174

Query: 231 AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
             G+S LHIA R+ R   V   L+    D  + NK  ET L  A         + + +  
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

Query: 291 V 291
            
Sbjct: 234 Q 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  150 bits (381), Expect = 3e-42
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 12/203 (5%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           ++ +N     H AA+ G +++  +L++  A  +   T      T L  A+   H+E VK+
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAVKY 62

Query: 150 LLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           L++ G   A +    + G T LH AA+ GH E+V+ LLS     V   D  G T +  A 
Sbjct: 63  LIKAG---ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR 267
           + + ++LV  L+      IN+ D + N  LH A   G V I + LL     D   +N   
Sbjct: 120 EYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHG 177

Query: 268 ETALDTAEKTGHSEIGVILKEHG 290
           ++ L  A +    +  V+     
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRD 200

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  124 bits (315), Expect = 5e-33
 Identities = 42/200 (21%), Positives = 87/200 (43%), Gaps = 18/200 (9%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL        +E V  +I +   ++        +  G T L++AA+ G+ ++V+ ++  
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGALVD------PKDAEGSTCLHLAAKKGHYEVVQYLLS- 98

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQG 142
           +       +   G+     A +   ++++K+L+   +        D+     LH A+  G
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN---IRDNEENICLHWAAFSG 155

Query: 143 HVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQ 200
            V++ + LL        + A +  G + LH AAR    + V   LS++  + L+ +K+G+
Sbjct: 156 CVDIAEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGE 211

Query: 201 TALHMAVKGQSIELVDELVK 220
           T L  A     +    ++ K
Sbjct: 212 TPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
             M      S LH A   G V I   L+   G +    ++ + T L  A +  H E    
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 286 LKEHG 290
           L + G
Sbjct: 63  LIKAG 67

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  166 bits (424), Expect = 1e-48
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 15/229 (6%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME- 118
               L+ A        V+E++       + +  K ++G    H +      E+   L+  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKP---SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 119 -ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARN 175
                L    D S  T  H A S G++EVVK L ++      +    + G T LH A   
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGK 117

Query: 176 GHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
              E+ + L+     +      DK  Q  LH A    S++L++ L  +    +N  D +G
Sbjct: 118 KWFEVSQFLIENGASV---RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174

Query: 234 NSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
            + L  A  +G       L+   G +  +++     A D A      + 
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  148 bits (377), Expect = 9e-42
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 25  TPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
            PL           V +++ S    +  +      +Q G   L+ +  +   ++   ++ 
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQK------DQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 84  YH-DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL-LMTFDSSNTTALHTASSQ 141
              + +L      +G+  FHIA   G LEV+K L +   +  L    +   T LH A  +
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 142 GHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199
              EV +FL+E G   A++  +    +  LH AA  G L++++ L       V   DK+G
Sbjct: 118 KWFEVSQFLIENG---ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174

Query: 200 QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
            T L  A+     +    LV+      ++VD KG  A  +A  +   + 
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 32/127 (25%)

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224
               LH A        V+ LL  +P ++L+ D+ G+  LH +V  Q+ E+   L+     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS---- 57

Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
                         +              N+N  D    + S  T    A   G+ E+  
Sbjct: 58  -------------KME-------------NVNLDDYP--DDSGWTPFHIACSVGNLEVVK 89

Query: 285 ILKEHGV 291
            L +  +
Sbjct: 90  SLYDRPL 96

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  169 bits (430), Expect = 7e-48
 Identities = 49/262 (18%), Positives = 86/262 (32%), Gaps = 44/262 (16%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
                 A  +AAE G++ ++  +     T +  +     Y AF +AA+ G L VL  L E
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 119 ALPELL-MTFDSSNTTALHTASSQ-GHVEVVKFLLEKGSTLAT---IARSNG-------- 165
             P        + N  A   A+   GH  V+ FLL+    LA         G        
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI 244

Query: 166 ----------KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG---QSI 212
                       A   +  +G  ++V                +G   L   ++      +
Sbjct: 245 ARHVNRLKEMHDAFKLSNPDGVFDLVTKS----------ECLQGFYMLRNLIRRNDEVLL 294

Query: 213 ELVDELVKVEPVI----INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRE 268
           + +  L+ +  +        +    N  L +A R G       LL+I     +V+  ++ 
Sbjct: 295 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKA 350

Query: 269 TALDTAEKTGHSEIGVILKEHG 290
                 E  G  ++  +  EH 
Sbjct: 351 NNYYINETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  108 bits (270), Expect = 8e-26
 Identities = 38/280 (13%), Positives = 93/280 (33%), Gaps = 24/280 (8%)

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
           E I         ++        + A         K L     +  +  +     A  T  
Sbjct: 48  EAIHIFLPGTKNMEQVRQLLCLYYAH---YNRNAKQLWSDAHKKGIKSEVICFVAAITGC 104

Query: 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN-DKK 198
               ++ +  LL     +  I ++    A   AA NGHL ++  L    P  ++     +
Sbjct: 105 -SSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 162

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVI-INMVDAKGNSALHI-ATRKGRVQIVQKLLNIN 256
              A  +A +   + +++ L ++ P     M+ A+   A    A  +G   ++  LL+  
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222

Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKH 316
                ++      A     + G   +   +  H      +   + + A   K +  D   
Sbjct: 223 ----VMLAY----AEIHEFEYGEKYVNPFIARHV-----NRLKEMHDA--FKLSNPDGVF 267

Query: 317 EVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTV 356
           ++  + E   +    +  + +R +++  + +   ++   +
Sbjct: 268 DLVTKSEC-LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  161 bits (411), Expect = 1e-46
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
            + G++ L++A  +    +  E+IR     LA +  +        H+A      E+ + L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN-----GKTAL 169
           +     PEL    D    T LH A  QG +  V  L +  +T    +        G T L
Sbjct: 65  LGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 170 HSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMV 229
           H A+ +G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K    + N V
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRV 180

Query: 230 DAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
             +G S   +   +   +I  + L    ++   +    E       ++  +E 
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQ-QQLGQLTLENLQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  139 bits (352), Expect = 3e-38
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 30/244 (12%)

Query: 15  KKQLTAKRDDTPLQSLVRTGSVELVLDMIS---SYGDMELREMLSKMNQSGETALYVAAE 71
           K+QLT +  D+ L   +      L +++I              L+  N   +T L++A  
Sbjct: 1   KQQLT-EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLAVI 54

Query: 72  YGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLM 125
               ++   ++       AG    ++   G    H+A +QGCL  + +L +    P L  
Sbjct: 55  TNQPEIAEALLG------AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 126 TFDSSNT---TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK 182
              ++N    T LH AS  G++ +V+ L+  G+ +      NG+TALH A    + ++V 
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168

Query: 183 ALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
            LL     +   N    +G +   +     S  +  +L ++  +    +  +        
Sbjct: 169 LLLKCGADV---NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYD 224

Query: 241 TRKG 244
           T   
Sbjct: 225 TESE 228

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  119 bits (300), Expect = 7e-31
 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 19/201 (9%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL   V T   E+   ++ +  D ELR      +  G T L++A E G +  V  + + 
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELR------DFRGNTPLHLACEQGCLASVGVLTQS 100

Query: 85  --HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140
                  + +KA N  G+   H+A+  G L ++++L+    ++      +  TALH A  
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160

Query: 141 QGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGI-VLRNDK 197
             + ++V  LL+ G   A +   +  G +            I + L      +  L+   
Sbjct: 161 LQNPDLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL--TLENLQMLP 215

Query: 198 KGQTALHMAVKGQSIELV-DE 217
           + +       + +  E   DE
Sbjct: 216 ESEDEESYDTESEFTEFTEDE 236

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  165 bits (421), Expect = 2e-46
 Identities = 51/275 (18%), Positives = 96/275 (34%), Gaps = 30/275 (10%)

Query: 42  MISSYGDMELREML----SKMNQS--GETALYVAAEYGYVDMVREMIRYHDTSLAG---- 91
              + G   + E +      +       T L+  A     +   ++I +           
Sbjct: 99  HTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 92  --IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVV 147
                 +      +A       ++  LM+  A P     ++ S  +ALH A++     ++
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT---IYNKSERSALHQAAANRDFGMM 215

Query: 148 KFLLEKGSTLATI-ARSN-GKTALHSAARNGHLE---IVKALLSK-------EPGIVLRN 195
            ++L        I      G TAL   A N   +     K L+ K               
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
             KG+TALH A +  ++ +V  LV  +    +  D  G + + +A ++GR+++V  L+  
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ- 334

Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            G     ++ +  TA   A+   H  I  I     
Sbjct: 335 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  147 bits (372), Expect = 1e-39
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 26/254 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELRE--MLSKMNQSGETALYVAAEYGYVDMVREMI 82
           T L  +    S E   D+I       +     ++ M+    T L +A       +V  ++
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 83  RYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILMEALPEL--LMTFDSSNTTALH 136
                  AG    I  ++   A H AA      ++  ++ +      +   D +  TAL 
Sbjct: 187 ------KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240

Query: 137 TASSQGH---VEVVKFLLEKG-------STLATIARSNGKTALHSAARNGHLEIVKALLS 186
             +       V   K L+EKG       +      +  G+TALH AA+  ++ IVK L+ 
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300

Query: 187 KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
           ++     + D+ G+T + +A +   IE+V  L++     +  VDA  ++A  +A      
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHH 359

Query: 247 QIVQKLLNINGVDK 260
            IV         ++
Sbjct: 360 NIVDIFDR-CRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  145 bits (367), Expect = 7e-39
 Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 34/249 (13%)

Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKIL 116
           +   S + +L  A+  GY+   R                            G   +    
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRN-----------ELQHYSLYPNPQGYGNGNDFLGDFN 80

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS-NGKTALHSAA 173
                +P      +  +   LHT  + G   + + +  +      I    + +T LH  A
Sbjct: 81  HTNLQIPT---EPEPESPIKLHTE-AAGSYAITEPITRES---VNIIDPRHNRTVLHWIA 133

Query: 174 RNGHLEIVKALLSKEPGIVLRN-------DKKGQTALHMAVKGQSIELVDELVKVEPVII 226
            N   E  + L+  E    +         D    T L +AV  +   LV  L+K      
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-ADP 192

Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLN--INGVDKAVINKSRETALDTAEKTGHSEIGV 284
            + +    SALH A       ++  +LN      D   ++++  TAL         +   
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252

Query: 285 ILK---EHG 290
             K   E G
Sbjct: 253 SAKLLVEKG 261

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.4 bits (181), Expect = 3e-14
 Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 18/130 (13%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           + + +L  A+ +G+++  +  L                         +  L D       
Sbjct: 36  SSQHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNHTNL- 84

Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR--ETALDTAEKTGHSE 281
            I    + +    LH     G   I + +     V+   I   R   T L        +E
Sbjct: 85  QIPTEPEPESPIKLHTEA-AGSYAITEPITR-ESVN---IIDPRHNRTVLHWIASNSSAE 139

Query: 282 IGVILKEHGV 291
               L  H  
Sbjct: 140 KSEDLIVHEA 149

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  162 bits (413), Expect = 2e-46
 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 24/239 (10%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
             S  + ++ AA +G+   +R +I         +     +     H A   G L  +KIL
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQG----WAVNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSNGKTALHSAA 173
           ++  A         +   T L  A   G  + V  LL+ G   A++   S+  + +H AA
Sbjct: 112 LKHGAQVN---GVTADWHTPLFNACVSGSWDCVNLLLQHG---ASVQPESDLASPIHEAA 165

Query: 174 RNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           R GH+E V +L++    I   +       T L++A + Q    V +L++     +N    
Sbjct: 166 RRGHVECVNSLIAYGGNI---DHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GK 220

Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
             +S LH   R    ++   L++  G D    N   +  ++           + L+  G
Sbjct: 221 GQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVPPESPLAQ-LFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  154 bits (393), Expect = 2e-43
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 28/235 (11%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--A 119
           G          G   +   ++           A + +   H AA  G    L+ L+    
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLM---------GDAVSDWSPMHEAAIHGHQLSLRNLISQGW 83

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGH 177
                    + + + LH A   GH+  VK LL+ G   A +    ++  T L +A  +G 
Sbjct: 84  AVN---IITADHVSPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGS 137

Query: 178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSAL 237
            + V  LL    G  ++ +    + +H A +   +E V+ L+      I+   +   + L
Sbjct: 138 WDCVNLLLQH--GASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPL 194

Query: 238 HIATRKGRVQIVQKLLNINGVDKAVINKSR--ETALDTAEKTGHSEIGVILKEHG 290
           ++A    +   V+KLL  +G D   +N+ +  ++ L    +T   E+  +L + G
Sbjct: 195 YLACENQQRACVKKLLE-SGAD---VNQGKGQDSPLHAVVRTASEELACLLMDFG 245

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  146 bits (372), Expect = 2e-40
 Identities = 50/254 (19%), Positives = 92/254 (36%), Gaps = 35/254 (13%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  D +P+      G    + ++IS    +        +     + L+ A   G++  V+
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVN------IITADHVSPLHEACLGGHLSCVK 109

Query: 80  EMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTT 133
            +++       G        + +     A   G  + + +L++  A  +     +S   +
Sbjct: 110 ILLK------HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP----ESDLAS 159

Query: 134 ALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
            +H A+ +GHVE V  L+  G     I    S+  T L+ A  N     VK LL    G 
Sbjct: 160 PIHEAARRGHVECVNSLIAYG---GNIDHKISHLGTPLYLACENQQRACVKKLLES--GA 214

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
            +   K   + LH  V+  S EL   L+          +A+G   + +   +    + Q 
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPES--PLAQL 271

Query: 252 LLNINGVDKAVINK 265
            L   G     + K
Sbjct: 272 FLEREGAS---LPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  136 bits (345), Expect = 1e-36
 Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 30/233 (12%)

Query: 68  VAAEYGYVDMVREMIRY---HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL 124
           + + + +      ++       +        +G          G   +   LM       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD----- 55

Query: 125 MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVK 182
                S+ + +H A+  GH   ++ L+ +G     +    ++  + LH A   GHL  VK
Sbjct: 56  ---AVSDWSPMHEAAIHGHQLSLRNLISQG---WAVNIITADHVSPLHEACLGGHLSCVK 109

Query: 183 ALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVK----VEPVIINMVDAKGNSAL 237
            LL    G  V        T L  A    S + V+ L++    V+P      ++   S +
Sbjct: 110 ILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------ESDLASPI 161

Query: 238 HIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           H A R+G V+ V  L+   G +         T L  A +         L E G
Sbjct: 162 HEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  159 bits (404), Expect = 4e-45
 Identities = 50/260 (19%), Positives = 100/260 (38%), Gaps = 26/260 (10%)

Query: 40  LDMISSYGDMELREMLS-----KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA 94
           L  I+++   +L+  LS     K +  G +A Y A     V +V  ++       A    
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG----ALKNL 59

Query: 95  RNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
                  H AA     +++KIL+           FD    TAL+ A   G+++ VK  ++
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           K   L    ++  KT+ + A     + IV   LS+       +     + +H+ +K   +
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITIKNGHV 174

Query: 213 ELVDELVKVEPVIINMVDAKGNS-ALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
           +++  L+       N  ++      + +A     ++++Q L     ++   I     +A 
Sbjct: 175 DMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDIN---IY----SAN 225

Query: 272 DTAEKTGHSEIGVILKEHGV 291
                   +EI  ++ E  V
Sbjct: 226 LENVLLDDAEIAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  113 bits (284), Expect = 3e-28
 Identities = 26/202 (12%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
            + +T L   V +G+++ V   +     +             +T+ Y A     V +V  
Sbjct: 93  DKGNTALYYAVDSGNMQTVKLFVKKNWRLM-----FYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140
            +       +           HI  K G ++++ +L++ +              +  A  
Sbjct: 148 FLSEIP---STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 204

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKG 199
              +E+++ L +           N  +A          EI K ++ K   +    +    
Sbjct: 205 NKDIEMLQALFKYDI--------NIYSANLENVLLDDAEIAKMIIEK--HVEYKSDSYTK 254

Query: 200 QTALHMAVKGQSIELVDELVKV 221
              +    K   I   ++ +++
Sbjct: 255 DLDIVKNNKLDEIISKNKELRL 276

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  157 bits (400), Expect = 7e-45
 Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 24/248 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVR---------EMIRY---HDTSLAGIKARNGYDAFHIAAK 106
              G T L +A+  G                +I        SL     R G  A H+AA+
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 107 QGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
               +  K L+E  A   +    D+   T LH A S     V + L+   +T       +
Sbjct: 67  YSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVE 222
           G T L  AAR     +++ L++    +   N  D  G++ALH A    +++    L+K  
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 223 PVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
               +M + +  + L +A R+G  +  + LL+ +  ++ + +       D A++  H +I
Sbjct: 181 -ANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDI 238

Query: 283 GVILKEHG 290
             +L    
Sbjct: 239 VRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  144 bits (367), Expect = 5e-40
 Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 33/252 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREML--------SKMNQSGETALYVAAEYGYVD 76
           TPL     +G      +         +            ++ +++GETAL++AA Y   D
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 77  MVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT 132
             + ++       A     I+   G    H A       V +IL+      L       T
Sbjct: 72  AAKRLL------EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPG 190
           T L  A+      +++ L+      A + A  + GK+ALH AA   +++    LL     
Sbjct: 126 TPLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
               +  + + +T L +A +  S E    L+       ++ D        IA  +    I
Sbjct: 183 K---DMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDI 238

Query: 249 VQKLL----NIN 256
           V+ L     + +
Sbjct: 239 VRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  127 bits (322), Expect = 9e-34
 Identities = 40/201 (19%), Positives = 78/201 (38%), Gaps = 27/201 (13%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           ++  +G+    IA+  G                           ++   +    V+   +
Sbjct: 5   VRGPDGFTPLMIASCSG---------------------GGLETGNSEEEEDAPAVISDFI 43

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
            +G++L       G+TALH AAR    +  K LL         N  D  G+T LH AV  
Sbjct: 44  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSA 100

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRET 269
            +  +   L++     ++     G + L +A R     +++ L+N +  D   ++   ++
Sbjct: 101 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKS 159

Query: 270 ALDTAEKTGHSEIGVILKEHG 290
           AL  A    + +  V+L ++G
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNG 180

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  104 bits (261), Expect = 2e-25
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKIL 116
              G T L +AA      M+ ++I  H    A + A    G  A H AA    ++   +L
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSA 172
           ++  A  ++    ++   T L  A+ +G  E  K LL+     A         +     A
Sbjct: 177 LKNGANKDMQ---NNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIA 230

Query: 173 ARNGHLEIVKALLSKEPGIVLRN 195
               H +IV+ L  +       +
Sbjct: 231 QERMHHDIVRLLDLEHHHHHHHH 253

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  155 bits (395), Expect = 1e-44
 Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 11/225 (4%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLK 114
             K  + G+  ++ A          E+       +           +     +G   ++ 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIY--ITDMSDTNWWKGTSKGRTGLIP 62

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
               A          S    LH A+ +G++  ++  L+    +       G TAL+ A  
Sbjct: 63  SNYVAEQ------AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACH 115

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GH +IV+ L ++    + + +K G TALH A      ++V  L+       ++ + +  
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKK 174

Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGH 279
            A  +AT      +++K        + + N       + ++   H
Sbjct: 175 LAFDMATNAACASLLKKKQG-TDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  151 bits (383), Expect = 9e-43
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 20/228 (8%)

Query: 19  TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMV 78
             K     +   + T       ++    GD+        +    +T  +     G   ++
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDII------YITDMSDTNWWKGTSKGRTGLI 61

Query: 79  REMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALH 136
                         +A +  +  H AAK+G L  L+  ++       L   D + +TAL+
Sbjct: 62  PSNYVA-------EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL---DKAGSTALY 111

Query: 137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196
            A   GH ++V+ L  + +         G TALH+AA  G+ +IV+ LL+K     LR +
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-N 170

Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244
            + + A  MA       L+ +    +  +  + +A+       +  + 
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  141 bits (359), Expect = 2e-39
 Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 13/200 (6%)

Query: 94  ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
            + G      A           L     +++      + T     +S+G   ++      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 154 GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQS 211
                     +    LH AA+ G+L  ++  L    G+   N  DK G TAL+ A  G  
Sbjct: 68  EQA------ESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGH 118

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
            ++V+ L     + +N  +  G++ALH A  KG   IVQ LL   G    + N  ++ A 
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAF 177

Query: 272 DTAEKTGHSEIGVILKEHGV 291
           D A     + +    +    
Sbjct: 178 DMATNAACASLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 88.8 bits (221), Expect = 3e-20
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 12  KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
                   A+  D PL    + G++  + + + +   +         +++G TALY A  
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL------DKAGSTALYWACH 115

Query: 72  YGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTF 127
            G+ D+V  +    +     +  +N  G  A H AA +G  +++++L+   A  +L    
Sbjct: 116 GGHKDIVEMLFTQPN---IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR--- 169

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
           +     A   A++     ++K      +   T++ +        +    H 
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 19/128 (14%)

Query: 166 KTALHSAARNG-----------HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
                   + G                  L  +E G ++       T            L
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEE-GDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA 274
           +          +       ++ LH A ++G +  +++ L+ N V    ++K+  TAL  A
Sbjct: 61  IPSN------YVAEQAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWA 113

Query: 275 EKTGHSEI 282
              GH +I
Sbjct: 114 CHGGHKDI 121

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  159 bits (404), Expect = 3e-44
 Identities = 48/274 (17%), Positives = 97/274 (35%), Gaps = 36/274 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             +    R G  + V  +I +     ++      N+ G TAL++A ++G VD  + +   
Sbjct: 22  EKIHVAARKGQTDEVRRLIETGVSPTIQ------NRFGCTALHLACKFGCVDTAKYLAS- 74

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
                      +G    H+A      +++  L+E                    +     
Sbjct: 75  VG---EVHSLWHGQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDER 124

Query: 145 EVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLEIVKALLSKEPGIVLRN--DKKGQ 200
           EV +           +    G+TALH     G  +LE++K L+            DK  +
Sbjct: 125 EVNEIGSH-------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP---TAKDKADE 174

Query: 201 TALHMAVKGQSIELVDELVKVEPVI----INMVDAKGNSALHIATRKGRVQIVQKLLNIN 256
           T L  A++ ++ E +D ++   P      ++  + +GNS LH A       +  + +   
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-M 233

Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           G+D  + +      L  + +     +   L +  
Sbjct: 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  159 bits (404), Expect = 3e-44
 Identities = 44/293 (15%), Positives = 91/293 (31%), Gaps = 46/293 (15%)

Query: 20  AKRDDTPLQSLVRTGSVELV--------------LDMISSYGDMELREM-LSKMNQSGET 64
                 P+   V     +LV                +++   + E+ E+     +  G+T
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT 140

Query: 65  ALYVAAEYG--YVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILMEAL 120
           AL+     G  Y++M++ +++      A    K +        A +    E L ++M+ +
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLG----ASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196

Query: 121 PEL----LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAAR 174
           P      L   +    + LH A      +V    +E G     +    N     L+ + R
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG---IDVNMEDNEHTVPLYLSVR 253

Query: 175 NGHLEIVKALLSKEPGI------------VLRNDKKGQTALHMAVKGQSIELVDELVKVE 222
              + + K LL K                VL +       +  A      E++  L +  
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

Query: 223 PVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE 275
              +      G        +K    + +  L          ++SR  +   ++
Sbjct: 314 -DEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA-PSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  152 bits (386), Expect = 1e-41
 Identities = 45/242 (18%), Positives = 79/242 (32%), Gaps = 34/242 (14%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           +      ++VAA  G  D VR +I            +N  G  A H+A K GC++  K L
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETG----VSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
                +              +H A      ++V  L+E            G+        
Sbjct: 73  ASVGEVHS-----LWHGQKPIHLAVMANKTDLVVALVEGAK-------ERGQMPESLLNE 120

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK--GQSIELVDELVKVEPVIINMVDAK 232
               E+ +               KGQTALH  V    + +E++  LV++        D  
Sbjct: 121 CDEREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKA 172

Query: 233 GNSALHIATRKGRVQIVQKLLNI----NGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
             + L  A      + +  +++     + +     NK   + L  A      ++ +   E
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 289 HG 290
            G
Sbjct: 233 MG 234

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  141 bits (358), Expect = 1e-37
 Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 25/194 (12%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
                 +  H+AA++G  + ++ L+E    P      +    TALH A   G V+  K+L
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPT---IQNRFGCTALHLACKFGCVDTAKYL 72

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210
              G      +  +G+  +H A      ++V AL+           ++GQ    +  +  
Sbjct: 73  ASVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNECD 122

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKG--RVQIVQKLLNINGVDKAVINKSRE 268
             E+ +       +  ++   KG +ALH     G   +++++ L+   G      +K+ E
Sbjct: 123 EREVNE-------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPTAKDKADE 174

Query: 269 TALDTAEKTGHSEI 282
           T L  A +  + E 
Sbjct: 175 TPLMRAMEFRNREA 188

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKT 277
           +     +     D +    +H+A RKG+   V++L+   GV   + N+   TAL  A K 
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHLACKF 63

Query: 278 GHSEIGVILKEHG 290
           G  +    L   G
Sbjct: 64  GCVDTAKYLASVG 76

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  155 bits (395), Expect = 1e-43
 Identities = 51/275 (18%), Positives = 95/275 (34%), Gaps = 29/275 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L   V       +  ++         E L   N  G+TAL++AA  G    V ++   
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 85  HDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILMEA-------------LPELLMTFDS 129
                AG+    R G+ A H+A +        +L++                    T D+
Sbjct: 68  G----AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
           S+  A   +      E      +    L      +G T LH A  +   E+V+ L     
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAKGNSALHIATRKGRVQ 247
            +       G+T LH+AV+ Q+  +++ L+K   +          G + L  A  +    
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPI 239

Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
           + + L   +G  +      + +   ++     S+ 
Sbjct: 240 LARLLRA-HGAPEPEDGGDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  145 bits (368), Expect = 7e-40
 Identities = 48/254 (18%), Positives = 85/254 (33%), Gaps = 25/254 (9%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEV 112
              + + G+TAL++A  + +   +  ++         +  +N  G  A H+AA  G    
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 113 LKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG------------STLA 158
           ++ L    A   +    +    TALH A           LL+              +   
Sbjct: 61  VEKLYAAGAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 159 TIARSNGKT-ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE 217
                     A   +  N   E           +    +  G T LH+AV  +  E+V  
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRL 176

Query: 218 LVKVEPVIINMVDAK-GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEK 276
           L       +N  +   G + LH+A       +++ LL   G D         T L +A  
Sbjct: 177 LRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALL 234

Query: 277 TGHSEIGVILKEHG 290
             +  +  +L+ HG
Sbjct: 235 RPNPILARLLRAHG 248

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  132 bits (335), Expect = 3e-35
 Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 19/210 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRY-----------HDTSLAGIKARNGYDAFHIAAKQ 107
            + G TAL++A           +++            + T          +    + ++ 
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

Query: 108 -GCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK 166
               E      +   +L    +    T LH A      E+V+ L + G+ L     + G+
Sbjct: 135 NPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR 193

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPV 224
           T LH A       +++ LL               G+T L  A+   +  L   L      
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADP---TARMYGGRTPLGSALLRPNPILARLLRAHG-A 249

Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLN 254
                     S    +          +   
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 98.4 bits (246), Expect = 4e-23
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 17/137 (12%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN---GYDAFHIAAKQGCLEVLKI 115
           N  G T L+VA  +   +MVR +        A +       G    H+A +     VL++
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAG----ADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 116 LME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHS 171
           L++  A P           T L +A  + +  + + L   G   A          +   S
Sbjct: 211 LLKAGADPTAR---MYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSS 264

Query: 172 AARNGHLEIVKALLSKE 188
           +  +   +        +
Sbjct: 265 SGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           +G TALH A  + H   +  LL    G    +  +  GQTALH+A        V++L   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLL------NINGVDKAVINK-------SRE 268
               + + +  G++ALH+A R         LL        +  D  +          S  
Sbjct: 68  G-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 269 TALDTAEKTGHSEIGVILKEHGV 291
            A   ++    +E     ++  +
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRL 149

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETALDTAEKTGHSE 281
           +   V   G++ALH+A        +  LL         ++      +TAL  A   G + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 282 IGVILKEHG 290
               L   G
Sbjct: 60  TVEKLYAAG 68

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  154 bits (393), Expect = 3e-43
 Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 27/273 (9%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
           D     +   +G  E VL ++    D+         N  G TAL+ A     VDMV+ ++
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYA------NVDGLTALHQACIDDNVDMVKFLV 93

Query: 83  RYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
                   G         G+   H AA  G L++ + L+     +    +S   T L  A
Sbjct: 94  EN------GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIA 146

Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
             +   E+++  + +          + + A     R    +  + L S     V R+ K 
Sbjct: 147 EEEAMEELLQNEVNRQG-------VDIEAARKEEERIMLRDARQWLNSGHINDV-RHAKS 198

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
           G TALH+A      E++  L++     +N+ D  G + LH A   G+ +  + L+  N  
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLC 256

Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
           D   +NK  +TA D A++     +  + K+  +
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  141 bits (358), Expect = 3e-38
 Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 28/277 (10%)

Query: 18  LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
           +   +     Q     GS   +   +            +K+          A   G  + 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKK-------TKVKFDDGAVFLAACSSGDTEE 55

Query: 78  VREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTT 133
           V  ++       A I   N  G  A H A     ++++K L+E  A        D+    
Sbjct: 56  VLRLLERG----ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP---DNEGWI 108

Query: 134 ALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVL 193
            LH A+S G++++ ++L+ +G+ +     S G T L  A      E+++  +++      
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNR------ 161

Query: 194 RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
                 + A     +    +    L     +        G +ALH+A  KG  ++++ L+
Sbjct: 162 -QGVDIEAARKEEERIMLRDARQWLNSGH-INDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 254 NINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
                D  + +    T L  A   G  E   IL E+ 
Sbjct: 220 Q-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  140 bits (355), Expect = 7e-38
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           +          +    G    L+  +    +  + FD         A S G  E V  LL
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG--AVFLAACSSGDTEEVLRLL 60

Query: 152 EKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAV 207
           E+G   A I  A  +G TALH A  + ++++VK L+     I   N  D +G   LH A 
Sbjct: 61  ERG---ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAA 114

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR 267
               +++ + L+      +  V+++G++ L IA  +   +++Q  +N  GVD        
Sbjct: 115 SCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI------- 166

Query: 268 ETALDTAEKTGHSEIGVILKEHGV 291
           E A    E+    +    L    +
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHI 190

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  133 bits (338), Expect = 1e-35
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 24/214 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           +  G   L+ AA  GY+D+   +I      +       G     IA ++   E+L+  + 
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLIS-QGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNG 176
                +         A          +  ++L           R    G TALH AA  G
Sbjct: 161 RQGVDIEA-------ARKEEERIMLRDARQWLNSGH---INDVRHAKSGGTALHVAAAKG 210

Query: 177 HLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
           + E++K L+     +   N  D  G T LH A      E    LV+     +  V+  G 
Sbjct: 211 YTEVLKLLIQARYDV---NIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQ 266

Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRE 268
           +A  +A       + +     N     + ++ RE
Sbjct: 267 TAFDVADEDILGYLEELQKKQN----LLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.5 bits (223), Expect = 6e-20
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 40  LDMISSYGDMELREML-SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARN 96
           LD+       EL +   ++     E A          D  + +   H          A++
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH----INDVRHAKS 198

Query: 97  GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
           G  A H+AA +G  EVLK+L++      +    D    T LH A+  G  E  + L+E  
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIK---DYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 155 STLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
                + A +  G+TA   A  +    + +    +      + +KK
Sbjct: 256 ---CDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
           + M DAK      +    G    ++  +        V        L      G +E  + 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKVKFDDGAVFLAACSS-GDTEEVLR 58

Query: 286 LKEHGV 291
           L E G 
Sbjct: 59  LLERGA 64

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  154 bits (392), Expect = 1e-42
 Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 48/303 (15%)

Query: 19  TAKRDDTPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDM 77
           T +     L    R+G+ E ++ +++    +          +    T L++AA Y  V +
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS------DGRKSTPLHLAAGYNRVRI 73

Query: 78  VREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSN 131
           V+ ++++      G     K + G    H A   G  EV ++L++  A        D   
Sbjct: 74  VQLLLQH------GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN---AMDLWQ 124

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP-- 189
            T LH A+S+  VEV   LL  G+   T+   +GK+A+  A      E +          
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183

Query: 190 ------------------GIVLRNDKKGQTALHMAVK---GQSIELVDELVKVEPVIINM 228
                              I  +  +  +TALH AV     +  ++ + L++     +N 
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNE 242

Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
            +    + LH+A  +    +++ L   +G     ++   +TAL  A   GH +   +L  
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 289 HGV 291
           +G 
Sbjct: 302 YGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  153 bits (390), Expect = 3e-42
 Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 48/266 (18%)

Query: 44  SSYGDMELREML-------SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----I 92
            SYG  E+ E+L       + M+    T L+ AA    V++   ++ +      G    +
Sbjct: 99  CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH------GADPTL 152

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
              +G  A  +A      E L                   + L  A+ +  +  VK  L 
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEF------------KGHSLLQ-AAREADLAKVKKTLA 199

Query: 153 KGSTLATIARSN-GKTALHSAARNGH---LEIVKALLSKEPGIVLRN--DKKGQTALHMA 206
                    +    +TALH A  + H    ++ + LL K   +   N  +K   T LH+A
Sbjct: 200 LEI--INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV---NEKNKDFMTPLHVA 254

Query: 207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKS 266
            +    ++++ L K     +N +D+ G +ALH A   G +Q  + LL+  G D ++I+  
Sbjct: 255 AERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQ 312

Query: 267 RETALDTAEKTGHSEIGVILKEHGVP 292
             TA         +E    +     P
Sbjct: 313 GFTAAQMG-----NEAVQQILSESTP 333

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 5e-33
 Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 42/237 (17%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG-CLEVLKILME-- 118
           G++AL +A                      +      D    AA+ G   +++ +L    
Sbjct: 4   GKSALDLADPSAKAV---------------LTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNG 176
                    D   +T LH A+    V +V+ LL+ G   A +      G   LH+A   G
Sbjct: 49  VNCH---ASDGRKSTPLHLAAGYNRVRIVQLLLQHG---ADVHAKDKGGLVPLHNACSYG 102

Query: 177 HLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNS 235
           H E+ + LL    G  V   D    T LH A     +E+   L+        +V+  G S
Sbjct: 103 HYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGKS 159

Query: 236 ALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292
           A+ +A      + +                   + L  A +   +++   L    + 
Sbjct: 160 AVDMAPTPELRERLTYEFK------------GHSLLQAAREADLAKVKKTLALEIIN 204

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (296), Expect = 2e-29
 Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 47/250 (18%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
               TPL        VE+   ++S   D  L       N  G++A+ +A      + +  
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLV------NCHGKSAVDMAPTPELRERLTY 175

Query: 81  MIRY----HDTSLAGIKA---------------RNGYDAFHIAAKQG---CLEVLKILME 118
             +          A +                 ++   A H A         +V ++L+ 
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235

Query: 119 --ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAAR 174
             A        +    T LH A+ + H +V++ L + G   A + A  + G+TALH AA 
Sbjct: 236 KGANVNEK---NKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQTALHRAAL 289

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GHL+  + LLS      +    +G TA  M       E V +++  E   +   D    
Sbjct: 290 AGHLQTCRLLLSYGSDPSII-SLQGFTAAQMGN-----EAVQQIL-SESTPMRTSDVDY- 341

Query: 235 SALHIATRKG 244
             L  A++ G
Sbjct: 342 -RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 24/148 (16%)

Query: 164 NGKTALH---------------------SAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
            GK+AL                      +A      +++  L           D +  T 
Sbjct: 3   FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTP 61

Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV 262
           LH+A     + +V  L++     ++  D  G   LH A   G  ++ + LL  +G     
Sbjct: 62  LHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNA 119

Query: 263 INKSRETALDTAEKTGHSEIGVILKEHG 290
           ++  + T L  A      E+  +L  HG
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHG 147

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 7e-06
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256
           + G++AL +A                     +        L  A R G  + +  LL   
Sbjct: 2   EFGKSALDLADPS--------------AKAVLTGEYKKDELLEAARSGNEEKLMALLTPL 47

Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            V+    +  + T L  A       I  +L +HG
Sbjct: 48  NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  126 bits (319), Expect = 1e-33
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 50/228 (21%)

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTF-------DSSNTTALHTASSQGHVEVVKFLLE 152
              +AAK+  ++ L        +LL           +   TALH A+   ++E    L+E
Sbjct: 6   PLLLAAKENDVQALS-------KLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 153 KGSTLATIAR----SNGKTALHSAARNGHLEIVKALLSK------------EPGIVLRND 196
               L           G+TALH A  N ++ +V+ALL++                     
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVI-----INMVDAKGNSALHIATRKGRVQIVQ- 250
             G+  L  A    S E+V  L      I     I   D+ GN+ LHI   +        
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLL------IEHGADIRAQDSLGNTVLHILILQPNKTFACQ 172

Query: 251 --KLL-----NIN-GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
              LL       +    + V N    T    A   G+  +   L +  
Sbjct: 173 MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 87.7 bits (218), Expect = 8e-20
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK---- 220
            ++ L  AA+   ++ +  LL  E   V +    G+TALH+A    ++E    L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLL----NINGVDK--------AVINKSRE 268
           +    +     +G +ALHIA     V +V+ LL    +++              +    E
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 269 TALDTAEKTGHSEIGVILKEHG 290
             L  A   G  EI  +L EHG
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHG 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  147 bits (373), Expect = 1e-41
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 16/207 (7%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           +K          A ++   +V +IL +     +     D+   T L+ A     +E+ K 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 150 LLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           L+++G   A I    S   +    A   G  EI+  +L      + ++++ G  AL  A 
Sbjct: 58  LIDRG---ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA 114

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIA-----TRKGRVQIVQKLLNINGVDKAV 262
           +   I+ V  L++     I+  +  G +AL  A       +    IV+ L+  NG D+++
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSI 173

Query: 263 INKSRETALDTAEKTGHSEIGVILKEH 289
            + S  TA+D A + G++EI  IL ++
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  137 bits (348), Expect = 6e-38
 Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 21/206 (10%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
                  L  A +     +   +          +   +  G    +IA     +E+ K L
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD-TT---YQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ++  A   L    +S + +    A +QG  E++ ++L+  +         G  AL  AA 
Sbjct: 59  IDRGADINLQ---NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 175 NGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQS-----IELVDELVKVEPVIIN 227
            GH++ VK LL    G    +  +  G TAL  AV  +       ++V  L++      +
Sbjct: 116 KGHIDNVKLLLED--GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQS 172

Query: 228 MVDAKGNSALHIATRKGRVQIVQKLL 253
           + D  G +A+  A +KG  +I + L 
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  127 bits (321), Expect = 4e-34
 Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALL 185
                  L  A+ +   +V + L +       +    + G T L+ A  N  +EI KAL+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTT---YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 186 SKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
            +   I   N  +    +    A      E++  ++K     +N  +  G +AL  A  K
Sbjct: 60  DRGADI---NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 244 GRVQIVQKLLNINGVDKAVINKSRETALDTA-----EKTGHSEIGVILKEHG 290
           G +  V+ LL     D    N    TAL  A         + +I  +L E+G
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (254), Expect = 6e-25
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 17/169 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL   V    +E+   +I    D+ L+      N   ++    A   G  +++  M++ 
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGADINLQ------NSISDSPYLYAGAQGRTEILAYMLK- 93

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA-----S 139
           H T       R G +A   AA++G ++ +K+L+E   E +   +    TAL  A      
Sbjct: 94  HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153

Query: 140 SQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLS 186
           +Q + ++VK L+E G   A      ++G+TA+  A + G+ EI K L  
Sbjct: 154 NQLYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  147 bits (375), Expect = 2e-41
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 26/248 (10%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
                 +    + G  E   +++ +  D+       + ++   T L+ AA    +D+V+ 
Sbjct: 7   DYSTWDIVKATQYGIYERCRELVEAGYDVR------QPDKENVTLLHWAAINNRIDLVKY 60

Query: 81  MIRYHDTSLAGIKARN---GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTAL 135
            I       A +            H A +QG L ++  LM+  A P L+   D    + +
Sbjct: 61  YIS-KG---AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCI 113

Query: 136 HTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGH-LEIVKALLSKEPGIV 192
           H A+  GH  +V +L+ KG     +     NG T L  AA   H ++  + LL+    + 
Sbjct: 114 HLAAQFGHTSIVAYLIAKG---QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
           L +     TALH AV   +  ++  L++     ++  + KG SAL +A ++  V ++  L
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHL 229

Query: 253 LNINGVDK 260
                  K
Sbjct: 230 QE-ARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  144 bits (367), Expect = 3e-40
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 16/202 (7%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
                   A + G  E  + L+E           D  N T LH A+    +++VK+ + K
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYDVR---QPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 154 GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE 213
           G+ +  +      T LH A R GHL +V  L+       L  D +G + +H+A +     
Sbjct: 65  GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTS 123

Query: 214 LVDELVKVEPVIINMVDAKGNSALHIATRKG-RVQIVQKLL----NINGVDKAVINKSRE 268
           +V  L+      ++M+D  G + L  A  +   V   + LL    ++N  D       + 
Sbjct: 124 IVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD----KYHKN 178

Query: 269 TALDTAEKTGHSEIGVILKEHG 290
           TAL  A   G++ +  +L E G
Sbjct: 179 TALHWAVLAGNTTVISLLLEAG 200

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  130 bits (329), Expect = 8e-35
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALL 185
           D  +T  +  A+  G  E  + L+E G     +        T LH AA N  +++VK  +
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
           SK   +         T LH A +   + +V +L+K      +++D +G S +H+A + G 
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGH 121

Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS-EIGVILKEHG 290
             IV  L+   G D  +++++  T L  A    HS +   +L    
Sbjct: 122 TSIVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.1 bits (121), Expect = 5e-07
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
           +  +D      +  AT+ G  +  ++L+   G D    +K   T L  A      ++   
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 286 LKEHG 290
               G
Sbjct: 61  YISKG 65

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  146 bits (371), Expect = 5e-41
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 15/218 (6%)

Query: 80  EMIRY---HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
            +I        SL     R G  A H+AA+    +  K L+E  A        D+   T 
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTP 61

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           LH A S     V + L+   +T       +G T L  AAR     +++ L++    +   
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--- 118

Query: 195 N--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
           N  D  G++ALH A    +++    L+K      +M + +  + L +A R+G  +  + L
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVL 177

Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           L+ +  ++ + +       D A++  H +I  +L E+ 
Sbjct: 178 LD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  139 bits (354), Expect = 1e-38
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 35/220 (15%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
           +++GETAL++AA Y   D  + ++       A     I+   G    H A       V +
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLL------EASADANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSA 172
           IL+      L       TT L  A+      +++ L+      A +      GK+ALH A
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWA 132

Query: 173 ARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVI----- 225
           A   +++    LL         +  + + +T L +A +  S E    L      +     
Sbjct: 133 AAVNNVDAAVVLLKNGANK---DMQNNREETPLFLAAREGSYETAKVL------LDHFAN 183

Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINK 265
            ++ D        IA  +    IV +LL+       V + 
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIV-RLLDEYN---LVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (336), Expect = 5e-36
 Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 7/185 (3%)

Query: 108 GCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNG 165
               V+   +     L    D +  TALH A+     +  K LLE     A      + G
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMG 58

Query: 166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
           +T LH+A       + + L+      +      G T L +A +     ++++L+      
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-AD 117

Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
           +N VD  G SALH A     V     LL  NG +K + N   ET L  A + G  E   +
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 286 LKEHG 290
           L +H 
Sbjct: 177 LLDHF 181

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (318), Expect = 1e-33
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           +  G T L+ A       + + +IR +  +    +  +G     +AA+     +L+ L+ 
Sbjct: 55  DNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 119 --ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAAR 174
             A        D    +ALH A++  +V+    LL+ G   A    ++N  +T L  AAR
Sbjct: 114 SHADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLFLAAR 167

Query: 175 NGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232
            G  E  K LL         +  D   +    +A +    ++V  L +         +  
Sbjct: 168 EGSYETAKVLLDHFANR---DITDHMDRLPRDIAQERMHHDIVRLLDE--------YNLV 216

Query: 233 GNSALH 238
            +  LH
Sbjct: 217 RSPQLH 222

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  140 bits (356), Expect = 2e-39
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           ++ ++H  ++QG ++ +K  L KG  L       G T L  A+  G +E V+ LL     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
               +   K+ ++AL +A  G   ++V  L++ + V IN+ D  G + L  A R   V+ 
Sbjct: 62  P---HILAKERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKC 117

Query: 249 VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           V+ LL   G D      S  T +D A   G+ ++  +++ H 
Sbjct: 118 VEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  139 bits (353), Expect = 4e-39
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
           + H  A QG L+ LK  +     L+   D    T L  AS+ G +E V+FLLE G   A 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG---AD 61

Query: 160 I--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELV 215
                   ++AL  A+  G+ +IV  LL ++  I   N  D  G T L  AV+G  ++ V
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDI---NIYDWNGGTPLLYAVRGNHVKCV 118

Query: 216 DELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRET 269
           + L+      +      G + + +A   G  ++ Q + N + +     N     
Sbjct: 119 EALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIEN-HILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  119 bits (300), Expect = 1e-31
 Identities = 35/185 (18%), Positives = 78/185 (42%), Gaps = 22/185 (11%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
           D   +  L   G ++ + + +    ++      +K ++ G T L  A+ +G ++ VR ++
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLV-----NKPDERGFTPLIWASAFGEIETVRFLL 56

Query: 83  RYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALH 136
                   G    I A+    A  +A+  G  +++ +L+E          +D +  T L 
Sbjct: 57  E------WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN---IYDWNGGTPLL 107

Query: 137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196
            A    HV+ V+ LL +G+ L T    +G T +  A   G+ ++ + + +     + +++
Sbjct: 108 YAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSN 165

Query: 197 KKGQT 201
                
Sbjct: 166 LVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 78.2 bits (194), Expect = 3e-17
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 35/127 (27%)

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224
              ++H  A  G L+ +K  L K   +V + D++G T L                     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLI-------------------- 41

Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
                          A+  G ++ V+ LL   G D  ++ K RE+AL  A   G+++I  
Sbjct: 42  --------------WASAFGEIETVRFLLE-WGADPHILAKERESALSLASTGGYTDIVG 86

Query: 285 ILKEHGV 291
           +L E  V
Sbjct: 87  LLLERDV 93

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  142 bits (361), Expect = 2e-39
 Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
            G  +     +    +     +     +   F+      L  +S +G  ++V+ ++ +  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEV- 60

Query: 156 TLATIARSN--GKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSI 212
                +  N  G TALH+A   GH EIVK L+    G+ V   D  G T LH A    ++
Sbjct: 61  --DDPSLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNV 116

Query: 213 ELVDELVKVEPVI--INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETA 270
           ++   LV+    +  +   D +  +       +G  Q  Q L         ++NK    A
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG-VQEKMGIMNKGVIYA 175

Query: 271 LDTAEKTGHSEI 282
           L   E     E+
Sbjct: 176 LWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  125 bits (317), Expect = 3e-33
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSNGKTALHSAARNGHLEIVKALLS 186
           + +   +L         +     +  G     +         L  ++  G  ++V+ ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG---MRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 187 KEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244
           +       +  + +G TALH AV     E+V  LV+   V +N  D+ G + LH A    
Sbjct: 59  EVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCN 114

Query: 245 RVQIVQKLLNINGVDKAVINKS---RETALDTAEKTGHSEIGVILKEHG 290
            VQ+ + L+  +G     +  S            + G+++    L    
Sbjct: 115 NVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  116 bits (293), Expect = 6e-30
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 37/234 (15%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             L    RT   +   + I+    +       K N      L  ++  G  D+V+ +I  
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRV-------KFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL------MEALPELLMTFDSSNTTALH 136
                      N  G  A H A   G  E++K L      + A        DS   T LH
Sbjct: 60  V----DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-------DSDGWTPLH 108

Query: 137 TASSQGHVEVVKFLLEKGSTLATIARSN-----GKTALHSAARNGHLEIVKALLSKEPGI 191
            A+S  +V+V KFL+E G   A +                    G+ +  + L   +  +
Sbjct: 109 CAASCNNVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
            +  +K    AL         EL   + + + + I   + +       A    +
Sbjct: 166 GIM-NKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  140 bits (356), Expect = 3e-39
 Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
              +NG     I  ++   + L  L           DS N T L  A   G    +  L+
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLV 55

Query: 152 EKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAV 207
           E       +  +   G TAL  A +N  L I + LLSK   +   N  D  G+T L  ++
Sbjct: 56  ENF---DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKTPLMWSI 109

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR 267
                E+   L++     +N  + +G + L +A++ GR +IV+KLL   G D +  + + 
Sbjct: 110 IFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTG 167

Query: 268 ETALDTAEKTGHSEIGVILKEH 289
            TA  +A   G  E+  I  E 
Sbjct: 168 LTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  134 bits (339), Expect = 8e-37
 Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 24/202 (11%)

Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
           M+++GE    +  E      +  +           +         +A   G    +  L+
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR--------NYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 118 E--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAA 173
           E     E     D   +TAL  A     + + + LL KG   + +  +   GKT L  + 
Sbjct: 56  ENFDKLE---DKDIEGSTALIWAVKNNRLGIAEKLLSKG---SNVNTKDFSGKTPLMWSI 109

Query: 174 RNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
             G+ E+   LL     +   N  + +G+T L +A K    E+V +L+++    I+  D 
Sbjct: 110 IFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDL 165

Query: 232 KGNSALHIATRKGRVQIVQKLL 253
            G +A   A   GR ++++   
Sbjct: 166 TGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  118 bits (299), Expect = 3e-31
 Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 37  ELVLDMISSYGDMELREMLS-KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR 95
           E+V  +       +  + L    +    T L VA   G  + + +++  +      ++ +
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE-NF---DKLEDK 64

Query: 96  N--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           +  G  A   A K   L + + L+   +      T D S  T L  +   G+ E+  FLL
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---TKDFSGKTPLMWSIIFGYSEMSYFLL 121

Query: 152 EKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAV 207
           E G   A +  R+  G+T L  A++ G  EIVK LL     I   +  D  G TA   A 
Sbjct: 122 EHG---ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI---SARDLTGLTAEASAR 175

Query: 208 KGQSIELVDELVKV 221
                E++    +V
Sbjct: 176 IFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.4 bits (210), Expect = 4e-19
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 9/127 (7%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           NG+            + +  L +         D   +T L +A        +D+LV+   
Sbjct: 7   NGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENF- 58

Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG 283
             +   D +G++AL  A +  R+ I +KLL+  G +    + S +T L  +   G+SE+ 
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

Query: 284 VILKEHG 290
             L EHG
Sbjct: 118 YFLLEHG 124

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  138 bits (351), Expect = 6e-39
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK 187
           +N+ ++H  ++QG +  +   +E+      I      G T L  AA +G + +V+ LL  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQE---NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 188 EPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
                      K  ++AL +A      ++V  L+    V +N  D  G + L  A     
Sbjct: 59  GADP---QLLGKGRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNH 114

Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           V+ V+ LL  +G D  +   S   ++D A   G+  +  +++ H 
Sbjct: 115 VKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  137 bits (348), Expect = 2e-38
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
               + H  A QG +  L   +E   +       D    T L  A++ G + VV+FLL+ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A         ++AL  A   G+ +IVK LL     +   N  D  G T L  AV G
Sbjct: 59  G---ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV---NEYDWNGGTPLLYAVHG 112

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL----NINGVDK 260
             ++ V  L++       +    G +++ +A   G   + Q +      +    K
Sbjct: 113 NHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  114 bits (287), Expect = 8e-30
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 22/169 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             +  L   G +  +   I     +         ++ G T L  AA +G + +V  +++ 
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHT------DEEGFTPLMWAAAHGQIAVVEFLLQ- 57

Query: 85  HDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTA 138
                 G    +  +    A  +A  +G  +++K+L++          +D +  T L  A
Sbjct: 58  -----NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN---EYDWNGGTPLLYA 109

Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
               HV+ VK LLE G+   TI   +G  ++  A   G+  + + + S 
Sbjct: 110 VHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  136 bits (346), Expect = 6e-38
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             + T   +G+   V+  L+           +G + LH A R G   +V+ L+ +   I 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI- 65

Query: 193 LRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
             N  ++   T LH+A      ++V +L++ +   IN V+  GN  LH A   G+ Q+ +
Sbjct: 66  --NVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAE 122

Query: 251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            L+  NG   ++ NK  E  +D A+      +    ++ G
Sbjct: 123 DLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  133 bits (337), Expect = 9e-37
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 18/189 (9%)

Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
              D      ++G    +++ ++     L   D    + LH A  +G   VV+ L+ +G 
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG- 62

Query: 156 TLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQS 211
             A I        T LH AA +GH +IV+ LL  +  I   N  ++ G   LH A     
Sbjct: 63  --ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---NAVNEHGNVPLHYACFWGQ 117

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
            ++ ++LV     ++++ +  G   +  A    R  + ++     G +   +N       
Sbjct: 118 DQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEK-MGQN---LN---RIPY 169

Query: 272 DTAEKTGHS 280
                 G +
Sbjct: 170 KDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  125 bits (317), Expect = 6e-34
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 21/191 (10%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--A 119
               ++     G    VR  +   +  L      +G+   H A ++G   V+++L+   A
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGH 177
                   +  + T LH A+S GH ++V+ LL+     A I     +G   LH A   G 
Sbjct: 64  RIN---VMNRGDDTPLHLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQ 117

Query: 178 LEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA 236
            ++ + L++   G  V   +K G+  +  A       L +   K+    +N +       
Sbjct: 118 DQVAEDLVAN--GALVSICNKYGEMPVDKAKAPLRELLRERAEKMG-QNLNRIP------ 168

Query: 237 LHIATRKGRVQ 247
                 KG  +
Sbjct: 169 YKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (251), Expect = 9e-25
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 27/172 (15%)

Query: 25  TPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
             + +  R G+   V   + +   D+         +  G + L+ A   G   +V  +I 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQG------DDHGFSPLHWACREGRSAVVEMLIM 60

Query: 84  YHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHT 137
                  G    +  R      H+AA  G  ++++ L++  A        +      LH 
Sbjct: 61  R------GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHY 111

Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNGHLEIVKALLSK 187
           A   G  +V + L+  G   A ++  N  G+  +  A       + +     
Sbjct: 112 ACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
             +    +    +  +   V   +      +N  D  G S LH A R+GR  +V+ L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM- 60

Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            G    V+N+  +T L  A   GH +I   L ++ 
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 27/129 (20%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           + DDTPL      G  ++V  ++    D+        +N+ G   L+ A  +G   +  +
Sbjct: 70  RGDDTPLHLAASHGHRDIVQKLLQYKADIN------AVNEHGNVPLHYACFWGQDQVAED 123

Query: 81  MIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
           ++        G    I  + G      A       + +   +            + N   
Sbjct: 124 LVAN------GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ---------NLNRIP 168

Query: 135 LHTASSQGH 143
                 +G 
Sbjct: 169 YKDTFWKGT 177

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  138 bits (349), Expect = 1e-37
 Identities = 46/248 (18%), Positives = 78/248 (31%), Gaps = 38/248 (15%)

Query: 56  SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI 115
           S+    G     +  + G+               A + +      +  AA++   + L  
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVS-EYETPWWTAARKADEQALSQ 63

Query: 116 LME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           L+E    +     D +  TAL   +  G  + V+ L E G+ L       G TALH AA 
Sbjct: 64  LLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120

Query: 175 NGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVK------------ 220
               E+V+AL+     I      D++G TAL +A +          ++            
Sbjct: 121 YVRPEVVEALVELGADI---EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 177

Query: 221 ---------VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
                     E   I     KG    ++   K            +  +   + K  E  L
Sbjct: 178 VLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV-HVAE--DVAKDYEDGL 234

Query: 272 DTAEKTGH 279
           + A     
Sbjct: 235 EYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  132 bits (334), Expect = 1e-35
 Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 53/252 (21%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
           GE    + +               + ++           + I  K G             
Sbjct: 1   GEVNKIIGSRTA-----------GEGAME----------YLIEWKDGHSPSWVPSSYIAA 39

Query: 122 ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-AR-SNGKTALHSAARNGHLE 179
           ++     S   T   TA+ +   + +  LLE       + A   NG+TAL   A  G  +
Sbjct: 40  DV----VSEYETPWWTAARKADEQALSQLLED----RDVDAVDENGRTALLFVAGLGSDK 91

Query: 180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI 239
            V+ L      +  R+ + G TALHMA      E+V+ LV++    I + D +G +AL +
Sbjct: 92  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALEL 150

Query: 240 ATRKGRVQIVQKLL----NIN--------------GVDKAVINKSR---ETALDTAEKTG 278
           A    +       +     I                 +   I + R   +          
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210

Query: 279 HSEIGVILKEHG 290
             +   +   H 
Sbjct: 211 GGDCEWVKGVHV 222

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  124 bits (314), Expect = 9e-33
 Identities = 41/247 (16%), Positives = 68/247 (27%), Gaps = 45/247 (18%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
                  + G     +       D+             ET  + AA       + +++  
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADV---------VSEYETPWWTAARKADEQALSQLL-- 65

Query: 85  HDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
            D     + A   NG  A    A  G  + +++L EA  +L         TALH A+   
Sbjct: 66  ED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 143 HVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK------------- 187
             EVV+ L+E G   A I      G TAL  A            +               
Sbjct: 123 RPEVVEALVELG---ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 179

Query: 188 --------EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI 239
                   E   ++    KG+   ++       +           +   V       L  
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH---VAEDVAKDYEDGLEY 236

Query: 240 ATRKGRV 246
           A  +  +
Sbjct: 237 AVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 91.5 bits (228), Expect = 4e-21
 Identities = 36/214 (16%), Positives = 60/214 (28%), Gaps = 43/214 (20%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
              +TP  +  R    + +  ++    D++        +++G TAL   A  G    VR 
Sbjct: 43  SEYETPWWTAARKADEQALSQLLED-RDVDAV------DENGRTALLFVAGLGSDKCVRL 95

Query: 81  MIRYHDTSLAGIKARNGYD---AFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTAL 135
           +        A +  R+      A H+AA     EV++ L+E  A  E+    D    TAL
Sbjct: 96  LAEAG----ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---DERGLTAL 148

Query: 136 HTASSQGHVEVVKFLL-------EKGSTLATIA--------------RSNGKTALHSAAR 174
             A            +        +                      R  GK   +    
Sbjct: 149 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRW 208

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
               +                 K  +  L  AV 
Sbjct: 209 KDGGDCEWVKGVHVAED---VAKDYEDGLEYAVA 239

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  130 bits (330), Expect = 8e-36
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPG 190
             L  A+  G  + V+ L+  G   A +    ++G T LH AA NGHLEIV+ LL     
Sbjct: 16  KKLLEAARAGRDDEVRILMANG---ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
           +   N  D  G T L +A     +E+V+ L+K     +N  D +G++ LH+A   G ++I
Sbjct: 73  V---NAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEI 128

Query: 249 VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
           V+ LL  NG D    +K  +TA D +   G+ ++  IL++ 
Sbjct: 129 VEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  127 bits (322), Expect = 1e-34
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           +       AA+ G  + ++ILM   A        D+S  T LH A+  GH+E+V+ LL+ 
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A +      G T L  AA  GHLEIV+ LL     +   N  D +G T LH+A   
Sbjct: 70  G---ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV---NANDMEGHTPLHLAAMF 123

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256
             +E+V+ L+K     +N  D  G +A  I+   G   + + L  +N
Sbjct: 124 GHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  122 bits (308), Expect = 1e-32
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 21/168 (12%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME- 118
               L  AA  G  D VR ++       A +  +  +G+   H+AA  G LE++++L++ 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANG----ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 119 -ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARN 175
            A        D +  T L  A+  GH+E+V+ LL+ G   A + A    G T LH AA  
Sbjct: 70  GADVN---AVDHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGHTPLHLAAMF 123

Query: 176 GHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           GHLEIV+ LL     +   N  DK G+TA  +++   + +L + L K+
Sbjct: 124 GHLEIVEVLLKNGADV---NAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  107 bits (269), Expect = 3e-27
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 22/169 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             L    R G  + V  ++++  D+         + SG T L++AA  G++++V  +++ 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAE------DASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A + A +  G     +AA  G LE++++L++  A        D    T LH A+ 
Sbjct: 70  G----ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAM 122

Query: 141 QGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSK 187
            GH+E+V+ LL+ G   A + A+   GKTA   +  NG+ ++ + L   
Sbjct: 123 FGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (253), Expect = 4e-25
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQ 210
           +GS       S+    L  AAR G  + V+ L++    +   N  D  G T LH+A    
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNG 58

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETA 270
            +E+V+ L+K     +N VD  G + L +A   G ++IV+ LL  NG D    +    T 
Sbjct: 59  HLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTP 116

Query: 271 LDTAEKTGHSEIGVILKEHG 290
           L  A   GH EI  +L ++G
Sbjct: 117 LHLAAMFGHLEIVEVLLKNG 136

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  129 bits (327), Expect = 1e-35
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIAR-SNGKTALHSAARNGHLEIVKALLSKEPGI 191
             L  A+  G  + V+ L+  G   A       G + LH AA+ GH    + LL      
Sbjct: 4   KKLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 192 VLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV 249
              +   K  +T LHMA       +V+ L+K     +N  D    +ALH AT     ++V
Sbjct: 61  ---DARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 250 QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
           + L+   G D    +K  +TA D +   G+ ++  IL+
Sbjct: 117 ELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  122 bits (308), Expect = 6e-33
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME------ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           +       AA+ G  + ++ILM                D   T+ LH A+  GH    + 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT--------DWLGTSPLHLAAQYGHFSTTEV 52

Query: 150 LLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHM 205
           LL  G    +  AR+   +T LH AA  GH  IV+ LL     +   N  D    TALH 
Sbjct: 53  LLRAG---VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHW 106

Query: 206 AVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
           A +    E+V+ L+K     ++       +A  I+   G   +  ++L
Sbjct: 107 ATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA-EIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  116 bits (293), Expect = 6e-31
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 30/169 (17%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI-KARNGYDAFHIAAKQGCLEVLKILM--- 117
               L  AA  G  D VR ++  +    A       G    H+AA+ G     ++L+   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMA-NG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 118 ----EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHS 171
                            + T LH A+S+GH  +V+ LL+ G   A + A+     TALH 
Sbjct: 58  VSRDAR--------TKVDRTPLHMAASEGHANIVEVLLKHG---ADVNAKDMLKMTALHW 106

Query: 172 AARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDEL 218
           A  + H E+V+ L+     +   +   K  +TA  +++   + +L + L
Sbjct: 107 ATEHNHQEVVELLIKYGADV---HTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 98.2 bits (246), Expect = 2e-24
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           +    L  AAR G  + V+ L++   G     D  G + LH+A +       + L++   
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG- 57

Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG 283
           V  +       + LH+A  +G   IV+ LL  +G D    +  + TAL  A +  H E+ 
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 284 VILKEHG 290
            +L ++G
Sbjct: 117 ELLIKYG 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 97.5 bits (244), Expect = 4e-24
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 16/132 (12%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           +  G + L++AA+YG+      ++R          AR        H+AA +G   ++++L
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAG----VSRDARTKVDRTPLHMAASEGHANIVEVL 86

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSA 172
           ++  A        D    TALH A+   H EVV+ L++ G   A +  +S   KTA   +
Sbjct: 87  LKHGADVNAK---DMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDIS 140

Query: 173 ARNGHLEIVKAL 184
             NG+ ++ + L
Sbjct: 141 IDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           K D TPL      G   +V  ++    D+         +    TAL+ A E+ + ++V  
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVN------AKDMLKMTALHWATEHNHQEVVEL 118

Query: 81  MIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           +I+Y     A +  ++     AF I+   G  ++ +IL
Sbjct: 119 LIKYG----ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  132 bits (333), Expect = 2e-35
 Identities = 46/262 (17%), Positives = 77/262 (29%), Gaps = 52/262 (19%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI------KARNGYDAFHIAA---KQGCLEV 112
               L+     G  + +  ++ Y   +   +      +   G      A    + G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 113 LKILMEALPELLMTFDSSNT----------TALHTASSQGHVEVVKFLLEKG-------- 154
           +  L++   +        N           +ALH A  +  ++ VK L+E G        
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 155 ----STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVK 208
                         G+  L  AA     ++V  LL            D  G T LH  V 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV- 180

Query: 209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRE 268
                            +   ++  NSAL I    G +Q+  +L       + + N    
Sbjct: 181 -----------------MIADNSPENSALVIHMYDGLLQMGARLCP-TVQLEEISNHQGL 222

Query: 269 TALDTAEKTGHSEIGVILKEHG 290
           T L  A K G  EI   + +  
Sbjct: 223 TPLKLAAKEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (252), Expect = 3e-24
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 46/217 (21%)

Query: 25  TPL---QSLVRTGSVELVLDMISSYGDMELREML-----SKMNQSGETALYVAAEYGYVD 76
           T L      ++ G    ++ ++    D    + L     +     G +AL++A E   + 
Sbjct: 45  TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQ 104

Query: 77  MVREMIRY-----------HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE--- 122
            V+ ++                   G     G     +AA     +V+  L+E   +   
Sbjct: 105 CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164

Query: 123 ---------------LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT 167
                          +++  +S   +AL      G +++   L      L  I+   G T
Sbjct: 165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ-LEEISNHQGLT 223

Query: 168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALH 204
            L  AA+ G +EI + +L +E          G  A H
Sbjct: 224 PLKLAAKEGKIEIFRHILQRE--------FSGAAAHH 252

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  126 bits (320), Expect = 2e-34
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
              +    AA +G LE L  L++           +    TAL      G+ E+ + LL +
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 154 GSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A    +   G   +H AAR G L+ ++ LL  +  +   N  D +G   LH+A K 
Sbjct: 60  G---ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV---NIEDNEGNLPLHLAAKE 113

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
             + +V+ LVK     +   + KG++A  +A   GR ++V  +  
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  124 bits (315), Expect = 7e-34
 Identities = 39/162 (24%), Positives = 83/162 (51%), Gaps = 12/162 (7%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPG 190
             L +A+++G +E +  LL+       + A++  G+TAL    + G+ EI + LL +   
Sbjct: 7   NELASAAARGDLEQLTSLLQNN---VNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGAN 62

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
               +  D+ G   +H A +   ++ +  L++ +   +N+ D +GN  LH+A ++G +++
Sbjct: 63  P---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 249 VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           V+ L+     +    N   +TA D A   G +E+  +++ +G
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  121 bits (307), Expect = 1e-32
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 17/169 (10%)

Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKI 115
           M +     L  AA  G ++ +  +++ ++     + A+N  G  A  +    G  E+ + 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQ-NN---VNVNAQNGFGRTALQVMK-LGNPEIARR 55

Query: 116 LME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHS 171
           L+   A P+     D +    +H A+  G ++ ++ LLE     A +    N G   LH 
Sbjct: 56  LLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGNLPLHL 109

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           AA+ GHL +V+ L+      V   + KG TA  +A      E+V  +  
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  125 bits (318), Expect = 3e-34
 Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +S     L  A+  G VE VK L    S           T LH AA    + +V+ LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 188 EPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
             G  V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+ 
Sbjct: 65  --GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKY 121

Query: 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           +I + LL  +G D    N+   T LD  +  G ++I  +L+   
Sbjct: 122 EICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (314), Expect = 1e-33
 Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKIL 116
           N   +  L  AA+ G V+ V+++           +   G      H AA    + V++ L
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQS---VNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSA 172
           ++  A        D      LH A S GH EV + L++ G   A +        T LH A
Sbjct: 62  LQHGADVH---AKDKGGLVPLHNACSYGHYEVAELLVKHG---AVVNVADLWKFTPLHEA 115

Query: 173 ARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVK 220
           A  G  EI K LL    G    + ++ G T L +   G   ++ D L  
Sbjct: 116 AAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKDG-DTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 228 MVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
           M +++ +  L  A + G V+ V+KL  +  V+   I   + T L  A       +   L 
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 288 EHG 290
           +HG
Sbjct: 63  QHG 65

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  127 bits (322), Expect = 5e-34
 Identities = 47/222 (21%), Positives = 73/222 (32%), Gaps = 28/222 (12%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           N       AA  G LEV++  ++    P      +    TALH A    +  +V FL+  
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLITA 76

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           G   A +    S+G T LH AA      I  AL+     I       G TA       + 
Sbjct: 77  G---ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 212 --IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRET 269
              +    L  VE   + ++++    AL   + +   ++         V     +   ET
Sbjct: 134 GYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDEL--SFREGESVTVLRRDGPEET 190

Query: 270 ALDTAEKTGHSEIGVILKEHGVP-----CGKSIKPQANSARE 306
               A   G            VP         +KPQ +  + 
Sbjct: 191 DWWWAALHGQEGY--------VPRNYFGLFPRVKPQRSKVKH 224

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  121 bits (307), Expect = 6e-32
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 16/203 (7%)

Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLK 114
           +   +    L  AA  G +++V++ ++     +      N  G  A H A       ++ 
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVD 71

Query: 115 ILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
            L+   A      + DS   T LH A+S     +   L++ G+ +     S+G TA    
Sbjct: 72  FLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128

Query: 173 A--RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
              R G+ +    L   E   +   +     AL         EL     + E V +   D
Sbjct: 129 DPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDEL--SFREGESVTVLRRD 185

Query: 231 AKGNSALHIATRKGRVQIVQKLL 253
               +    A   G+   V +  
Sbjct: 186 GPEETDWWWAALHGQEGYVPRNY 208

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.9 bits (247), Expect = 9e-24
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 20/184 (10%)

Query: 44  SSYGDMELREML-------SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KA 94
           +  G++E+ +         S+ N+ G TAL+ A       +V  +I       A +    
Sbjct: 29  ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG----ANVNSPD 84

Query: 95  RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS--QGHVEVVKFLLE 152
            +G+   H AA      +   L++    +  T  S   TA        +G+ +   +L +
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQS 211
              ++  +  S    AL   +     E+      +   + VLR D   +T    A     
Sbjct: 145 VEQSM-GLMNSGAVYALWDYSAEFGDEL---SFREGESVTVLRRDGPEETDWWWAALHGQ 200

Query: 212 IELV 215
              V
Sbjct: 201 EGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 29/182 (15%), Positives = 49/182 (26%), Gaps = 46/182 (25%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L + +   +  +V  +I++  ++         +  G T L+ AA      +   ++++
Sbjct: 56  TALHNAICGANYSIVDFLITAGANVN------SPDSHGWTPLHCAASCNDTVICMALVQH 109

Query: 85  HDTSLAGIKARNGYD---AFHIAA--KQGCLEVLKILM---------------------- 117
                A I A    D   AF      ++G  +    L                       
Sbjct: 110 G----AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165

Query: 118 EALPELLMTF---------DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA 168
           E   EL             D    T    A+  G    V              RS  K  
Sbjct: 166 EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHH 225

Query: 169 LH 170
            H
Sbjct: 226 HH 227

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  125 bits (317), Expect = 6e-34
 Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 17/178 (9%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
            A  G   + I  K G             ++     S   T   TA+ +   + +  LLE
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE 65

Query: 153 KGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210
                  +     NG+TAL   A  G  + V+ L      +  R+ + G TALHMA    
Sbjct: 66  D----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL----NINGVDKAVIN 264
             E+V+ LV++    I + D +G +AL +A    +       +     I    + VIN
Sbjct: 122 RPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG--LEKVIN 176

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (297), Expect = 4e-31
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI- 191
                    GH              A +  S  +T   +AAR    + +  LL       
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIA---ADVV-SEYETPWWTAARKADEQALSQLLE---DRD 68

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK-GNSALHIATRKGRVQIVQ 250
           V   D+ G+TAL       S + V  L +     ++  D + G +ALH+A    R ++V+
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            L+   G D  V ++   TAL+ A +   +       + G
Sbjct: 128 ALVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  116 bits (294), Expect = 1e-30
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 10/166 (6%)

Query: 56  SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI 115
           S+    G     +  + G+               A + +      +  AA++   + L  
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVS-EYETPWWTAARKADEQALSQ 62

Query: 116 LME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           L+E    + +   D +  TAL   +  G  + V+ L E G+ L       G TALH AA 
Sbjct: 63  LLEDRDVDAV---DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
               E+V+AL+     I +  D++G TAL +A +          ++
Sbjct: 120 YVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (263), Expect = 2e-26
 Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 21/167 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
                  + G     +       D+             ET  + AA       + +++  
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADV---------VSEYETPWWTAARKADEQALSQLL-- 64

Query: 85  HDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
            D     + A   NG  A    A  G  + +++L EA  +L         TALH A+   
Sbjct: 65  ED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 143 HVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK 187
             EVV+ L+E G   A I      G TAL  A            +  
Sbjct: 122 RPEVVEALVELG---ADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.6 bits (231), Expect = 5e-22
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 14/143 (9%)

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           E    + +     G        ++GH             +      + +T    A +   
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKAD 56

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL----NINGVDKAVINKSR 267
            + + +L  +E   ++ VD  G +AL      G  + V+ L     +++  D     +  
Sbjct: 57  EQALSQL--LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD----MRGG 110

Query: 268 ETALDTAEKTGHSEIGVILKEHG 290
            TAL  A      E+   L E G
Sbjct: 111 LTALHMAAGYVRPEVVEALVELG 133

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  127 bits (320), Expect = 2e-33
 Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 57/270 (21%)

Query: 59  NQSGETALYVAAEYGYVDMVR---EMIRYHDTSLAGIKAR---NGYDAFHIA---AKQGC 109
                 +++ A        +      ++     L   + +    G      A      G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 110 LEVLKILME------ALPELLMTFDSSNT----TALHTASSQGHVEVVKFLLEKG----- 154
            + + +L++      +L + +    + +     TALH A  + ++ +V  L+E G     
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 155 --------STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALH 204
                    T        G+  L  AA    L IVK LL         +  D  G T LH
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189

Query: 205 MAVKGQ---------SIELVDELVKV------EPVIINMVDAKGNSALHIATRKGRVQIV 249
             V+              + +E++ +         +  + + KG + L +A   G++ ++
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249

Query: 250 QKLLNINGVDKAVINKSRETALDTAEKTGH 279
             +L    + +             A    H
Sbjct: 250 AYILQ-REIHE-------PECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (299), Expect = 2e-30
 Identities = 42/254 (16%), Positives = 79/254 (31%), Gaps = 52/254 (20%)

Query: 90  AGIKARNGYD--AFHIAAKQGCLEVLKILMEALPELL-------MTFDSSNTTALHTAS- 139
           AG K    YD  +   A  Q   + L+ L+  L                +  T L  A  
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 140 --SQGHVEVVKFLLEKGSTLATIAR----------SNGKTALHSAARNGHLEIVKALLSK 187
               G  + +  LL+      ++ +            G+TALH A    ++ +V  L+  
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 188 -------------EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAK 232
                        +          G+  L +A     + +V  L++   +P  I+  D+ 
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 233 GNSALHIATRKGRVQIVQ---------------KLLNINGVDKAVINKSRETALDTAEKT 277
           GN+ LH         +                   L+     + + N+   T L  A  +
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

Query: 278 GHSEIGVILKEHGV 291
           G   +   + +  +
Sbjct: 244 GKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  112 bits (281), Expect = 5e-28
 Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 58/253 (22%)

Query: 20  AKRDD---TPLQSLV---RTGSVELVLDMISSYGDMELREMLSKMN-----QSGETALYV 68
            K  +   T L   +     G  + +  ++      +  +     +       G+TAL++
Sbjct: 48  FKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

Query: 69  AAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFD 128
           A E   + +V  ++       A ++A    D F     +                     
Sbjct: 108 AIERRNMTLVTLLVENG----ADVQAAANGDFFKKTKGRPG------------------F 145

Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR--SNGKTALHSAARNGHLEIVK---- 182
                 L  A+    + +VKFLL+     A I+   S G T LH+        +      
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 183 -----------ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
                      A L     +    ++KG T L +A     I ++  +++         + 
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REI 257

Query: 232 KGNSALHIATRKG 244
                 H A    
Sbjct: 258 HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 31/136 (22%)

Query: 25  TPLQSLVRTGS---VELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG-------- 73
            PL     T     V+ +L       D+         +  G T L+   E          
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADIS------ARDSVGNTVLHALVEVADNTVDNTK 203

Query: 74  -YVDMVREMIRY-----HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTF 127
               M  E++           L  I  R G     +AA  G + VL  +++         
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-------- 255

Query: 128 DSSNTTALHTASSQGH 143
           +       H A+   H
Sbjct: 256 EIHEPECRHAAAHHHH 271

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  119 bits (302), Expect = 4e-32
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 15/163 (9%)

Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
             D    AA +G ++ ++ L+          +    TAL      G   +   LL++G  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQG-- 58

Query: 157 LATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSI 212
            A+     ++G + +H AAR G L+ +K L+     +   N  D  G   +H+AV+    
Sbjct: 59  -ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHT 114

Query: 213 ELVDELVK-VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
            +V  L    +   ++  DA+G + L +A ++G   +V  L  
Sbjct: 115 AVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  119 bits (301), Expect = 6e-32
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 9/159 (5%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L  A+++G V+ V+ LL +           GKTAL      G   I   LL +     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP- 61

Query: 193 LRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
             N  D  G + +H A +   ++ +  LV+     +N+ D  G   +H+A ++G   +V 
Sbjct: 62  --NVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVV- 117

Query: 251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
             L     D    +    T L+ A + G  ++  IL+ H
Sbjct: 118 SFL-AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  103 bits (260), Expect = 3e-26
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 29/174 (16%)

Query: 22  RDDTPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           R    L      G V+ V  ++       +       +N+ G+TAL V   +G   +  E
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPD------ALNRFGKTALQVMM-FGSTAIALE 53

Query: 81  MIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
           +++       G    ++  +G    H AA+ G L+ LK+L+E  A        D +    
Sbjct: 54  LLKQ------GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALP 104

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLS 186
           +H A  +GH  VV FL  +    + +    + G T L  A + G  ++V  L  
Sbjct: 105 IHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
           +    L  A     ++ V  L+  E V  + ++  G +AL +    G   I  +LL   G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK-QG 58

Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
               V + S  + +  A +TG  +   +L EHG
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  119 bits (300), Expect = 4e-31
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 13/200 (6%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           +     ++A      E+ + ++   +L       D  + TALH A S GH E+V+FLL+ 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLAT---RTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           G     +      G + LH AA  G  EIVKALL K   +    ++ G T LH A     
Sbjct: 63  G---VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNR 118

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
            E+   L++      +  D    +A+H A  KG +++V  LL        + +    T L
Sbjct: 119 HEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPL 176

Query: 272 DTAEKTGHSEIGVILKEHGV 291
             A      E    L   G 
Sbjct: 177 HLACDEERVEEAKFLVTQGA 196

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (279), Expect = 3e-28
 Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 21/238 (8%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
             S      +A      ++   ++                ++   A H A   G  E+++
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILAD------KSLATRTDQDSRTALHWACSAGHTEIVE 57

Query: 115 ILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
            L++           D +  + LH A+S G  E+VK LL KG+ +      NG T LH A
Sbjct: 58  FLLQLGVPVNDK---DDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYA 113

Query: 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232
           A     EI   LL        + D    TA+H A    ++++V  L+       N+ D +
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTE 171

Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           GN+ LH+A  + RV+  + L+   G    + NK  +T L  A   G   + +     G
Sbjct: 172 GNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVA--KGGLGLILKRLAEG 226

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  109 bits (274), Expect = 2e-27
 Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 23/230 (10%)

Query: 40  LDMISSYGDMELREML-------SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI 92
            ++  S    EL+E +       ++ +Q   TAL+ A   G+ ++V  +++        +
Sbjct: 11  CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LG---VPV 66

Query: 93  --KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
             K   G+   HIAA  G  E++K L+     +    + +  T LH A+S+   E+   L
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVML 125

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210
           LE G+           TA+H AA  G+L++V  LL  +    ++ D +G T LH+A   +
Sbjct: 126 LEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEE 183

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL----NIN 256
            +E    LV  +   I + + +  + L +A  KG + ++ K L      +
Sbjct: 184 RVEEAKFLVT-QGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEAS 230

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  116 bits (293), Expect = 1e-30
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 22/178 (12%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK-----TALHSAARNGHLEIVKAL 184
           S    +  A+  G  E    L EKG        S  K       L +       +I   L
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 185 LSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI-----INMVDAKGNSALH 238
           ++K  G  +    K+G T      +G   ++       +  +     I  +       + 
Sbjct: 62  INK--GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 239 IATRKG------RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
                        + + + + + +G+   + +K   TAL+  ++        +++++ 
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  114 bits (288), Expect = 6e-30
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 26/189 (13%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT--TALHTASSQGHVEVVKFL 150
            A + Y     AA  G  E    L E   E   +   SN     L   + +   ++  FL
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 151 LEKGSTLATI-AR-SNGKTALHSAARNGH------LEIVKALLSKEPGI-VLRNDKKGQT 201
           + KG   A I +R   G T      + G        E+ K  L K  G  +    K  + 
Sbjct: 62  INKG---ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK--GADITALYKPYKI 116

Query: 202 ALHMAVKGQSIELVDELVKVEPVI------INMVDAKGNSALHIATRKGRVQIVQKLL-- 253
            +   +    ++  + +   + +       + + D  G +AL    R  +   ++ +   
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 254 --NINGVDK 260
               N  + 
Sbjct: 177 IKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.8 bits (192), Expect = 7e-17
 Identities = 23/183 (12%), Positives = 49/183 (26%), Gaps = 24/183 (13%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  +   + +    G+ E  L++     + +        +      L    +     +  
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESV---LKSNILYDVLRNNNDEARYKISM 59

Query: 80  EMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPELLM-------TFDSS 130
            +I       A IK+R   G   F    + G  ++       L ++ +            
Sbjct: 60  FLINKG----ADIKSRTKEGTTLFFPLFQGGGNDITG--TTELCKIFLEKGADITALYKP 113

Query: 131 NTTALHTASSQGHVE------VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
               +        V+      + K +  +      I    G TAL    R      +K +
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

Query: 185 LSK 187
              
Sbjct: 174 EDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 22/112 (19%)

Query: 59  NQSGETALYVAAEYGYVDMVR--EMIRYHDTSL----AGIKARN--GYDAFHIAAKQGCL 110
            + G T  +   + G  D+    E+ +          A I A                 +
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKI----FLEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 111 EVLKILMEALPELLMTF--------DSSNTTALHTASSQGHVEVVKFLLEKG 154
           +  +  M  L +L+ +         D    TAL           +K + +  
Sbjct: 128 DENE--MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  114 bits (288), Expect = 4e-30
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 19/165 (11%)

Query: 90  AGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVV 147
           AG       D    AA +G +E ++ L+E  A P      +S     +      G   V 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVM-MMGSARVA 60

Query: 148 KFLLEKGSTLATI--ARSNGKT-ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALH 204
           + LL  G   A    A     T  +H AAR G L+ +  L      + +R D  G+  + 
Sbjct: 61  ELLLLHG---AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVD 116

Query: 205 MAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV 249
           +A +    ++   L             +G++   I   +G   I 
Sbjct: 117 LAEELGHRDVARYLRA------AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  109 bits (276), Expect = 2e-28
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKIL 116
                L  AA  G V+ VR ++       AG         G     +    G   V ++L
Sbjct: 11  PSADWLATAAARGRVEEVRALLE------AGANPNAPNSYGRRPIQVMM-MGSARVAELL 63

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           +   A P       ++ T  +H A+ +G ++ +  L   G+ L  +  + G+  +  A  
Sbjct: 64  LLHGAEPN--CADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEE 120

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
            GH ++ + L +           +G     +       ++ D
Sbjct: 121 LGHRDVARYLRAAAG------GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 98.7 bits (247), Expect = 2e-24
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 25/167 (14%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
            +     L +    G VE V  ++ +  +          N  G   + V    G   +  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAP------NSYGRRPIQVMM-MGSARVAE 61

Query: 80  EMIRYHDTSLAGIKARNGY---DAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
            ++ +     A     +        H AA++G L+ L +L    A  ++    D+     
Sbjct: 62  LLLLHG----AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR---DAWGRLP 114

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV 181
           +  A   GH +V ++L            + G       A  G  +I 
Sbjct: 115 VDLAEELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 97.9 bits (245), Expect = 3e-24
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKG 209
           +E     A  +       L +AA  G +E V+ALL    G      +  G+  + + + G
Sbjct: 1   MEPA---AGSSMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMMMG 55

Query: 210 QSIELVDELVKVEPVIINMVDAKGN-SALHIATRKGRVQIVQKLLNINGVDKAVINKSRE 268
            S  + + L+       N  D       +H A R+G +  +  L    G    V +    
Sbjct: 56  -SARVAELLLLHG-AEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGR 112

Query: 269 TALDTAEKTGHSEIGVILKEHG 290
             +D AE+ GH ++   L+   
Sbjct: 113 LPVDLAEELGHRDVARYLRAAA 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  112 bits (284), Expect = 8e-30
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALL 185
           +    T LH AS +G +  V++LL+ G   +    + + G T LH A  +GHL++V+ LL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNG---SDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

Query: 186 SKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
             +  +   N    +  + LH A K   +++V  L+       N V+  G   +     +
Sbjct: 64  QHKALV---NTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDE 119

Query: 244 GRVQIVQKLLNINGVDKA 261
               ++  L   N    A
Sbjct: 120 SMKSLL-LLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  107 bits (270), Expect = 7e-28
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           N  GET L++A+  G +  V  +++      +    ++  G+   H A   G L+V+++L
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNG----SDPNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSA 172
           ++  AL     T    N + LH A+  GHV++VK LL  G   A+    N  G   +   
Sbjct: 63  LQHKALVN---TTGYQNDSPLHDAAKNGHVDIVKLLLSYG---ASRNAVNIFGLRPVDYT 116

Query: 173 ARNGHLEIVKALLS 186
                  ++     
Sbjct: 117 DDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  106 bits (267), Expect = 2e-27
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 11/132 (8%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
               G    HIA+ +G +  ++ L++  + P      D +  T LH A + GH++VV+ L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELL 62

Query: 151 LEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
           L+     A +        + LH AA+NGH++IVK LLS         +  G   +     
Sbjct: 63  LQHK---ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDD 118

Query: 209 GQSIELVDELVK 220
                L+    K
Sbjct: 119 ESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.8 bits (180), Expect = 1e-15
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 36/127 (28%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G+T LH A+  G +  V+ LL                       G              
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQN---------------------GSDP----------- 36

Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG 283
              N+ D  G + LH A   G +++V+ LL  +           ++ L  A K GH +I 
Sbjct: 37  ---NVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIV 92

Query: 284 VILKEHG 290
            +L  +G
Sbjct: 93  KLLLSYG 99

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L      G +  V  ++ +  D  ++      + +G T L+ A  +G++ +V  ++++
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVK------DHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A +           H AAK G ++++K+L+   A    +   +      +     
Sbjct: 66  K----ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---NIFGLRPVDYTDD 118

Query: 141 QGHVEVVKFLLEKGSTLAT 159
           +    ++    +  S+ A+
Sbjct: 119 ESMKSLLLLPEKNESSSAS 137

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (279), Expect = 3e-29
 Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 15/132 (11%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           NG    H+AA+ G LEV+K+L+E  A        D +  T LH A+  GH+EVVK LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A +     NG+T LH AARNGHLE+VK LL     +   N  DK G+T LH+A + 
Sbjct: 58  G---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARN 111

Query: 210 QSIELVDELVKV 221
             +E+V  L++ 
Sbjct: 112 GHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (274), Expect = 2e-28
 Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 20/135 (14%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKIL 116
           +G T L++AA  G++++V+ ++       AG     K +NG    H+AA+ G LEV+K+L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSA 172
           +E  A        D +  T LH A+  GH+EVVK LLE G   A +     NG+T LH A
Sbjct: 55  LEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLA 108

Query: 173 ARNGHLEIVKALLSK 187
           ARNGHLE+VK LL  
Sbjct: 109 ARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  101 bits (254), Expect = 8e-26
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 7/129 (5%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           NG+T LH AARNGHLE+VK LL     +   N  DK G+T LH+A +   +E+V  L++ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281
               +N  D  G + LH+A R G +++V+ LL   G D    +K+  T L  A + GH E
Sbjct: 58  G-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLE 115

Query: 282 IGVILKEHG 290
           +  +L E G
Sbjct: 116 VVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.9 bits (183), Expect = 3e-16
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 17/134 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL    R G +E+V  ++ +  D+         +++G T L++AA  G++++V+ ++  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A + A++  G    H+AA+ G LEV+K+L+E  A        D +  T LH A+ 
Sbjct: 58  G----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAAR 110

Query: 141 QGHVEVVKFLLEKG 154
            GH+EVVK LLE G
Sbjct: 111 NGHLEVVKLLLEAG 124

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  113 bits (285), Expect = 9e-29
 Identities = 44/242 (18%), Positives = 77/242 (31%), Gaps = 49/242 (20%)

Query: 62  GETALYVAAEYGYVDMVREMIRY---HD---TSLAGIKARNGYDAFHIAA---KQGCLEV 112
               L+     G  D +  ++ +   H    T     +   G      A      G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 113 LKILMEALPELLMTFDSSNT----------TALHTASSQGHVEVVKFLLEKG-------- 154
           + IL++   +     +  N+          TALH A  +     V+ L+EKG        
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 155 -----STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI--VLRNDKKGQTALHMAV 207
                          G+  L  AA      IV  L         + R D +G T LH  V
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 208 KGQS---------IELVDELVKV------EPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
                         ++ D L+        +  +  +++  G S L +A + G++ I Q +
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

Query: 253 LN 254
           + 
Sbjct: 245 IR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  105 bits (264), Expect = 7e-26
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 50/243 (20%)

Query: 99  DAFHIAAKQGCLEVLKILMEAL-------PELLMTFDSSNTTALHTA---SSQGHVEVVK 148
                   +G  + L+ L+  L        +      S+  T L  A    S G  + + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 149 FLLEKGSTLATIAR----------SNGKTALHSAARNGHLEIVKALLSK----------- 187
            LL+       +              G+TALH A        V+ L+ K           
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 188 --EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAKGNSALHIA--- 240
             +P         G+  L +A       +V  L +   +   +   D++GN+ LH     
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 241 ------TRKGRVQIVQKLL------NINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
                   K   ++   LL        +   +A++N    + L  A KTG   I   +  
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

Query: 289 HGV 291
             +
Sbjct: 247 REI 249

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 88.7 bits (220), Expect = 6e-20
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 34/175 (19%)

Query: 59  NQSGETALYVAAEYGYVDMVREMI------------RYHDTSLAGIKARNGYDAFHIAAK 106
              G+TAL++A E      V  ++            R+      G     G     +AA 
Sbjct: 90  YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 107 QGCLEVLKILMEALPEL--LMTFDSSNTTALHTASSQGH---------VEVVKFLLEKG- 154
                ++  L E   +   L   DS   T LH   +             ++   LL K  
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209

Query: 155 -----STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALH 204
                + L  +  ++G + L  AA+ G + I + ++ +E       D       H
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE-----IADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.5 bits (204), Expect = 7e-18
 Identities = 37/183 (20%), Positives = 56/183 (30%), Gaps = 47/183 (25%)

Query: 131 NTTALHTASSQG----HVEVVKFLLEKGSTL---ATIARSNGKTALHSAARN---GHLEI 180
           N   L    S+G       ++ FLL     L        S GKT L  A  N   G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           +  LL                       G   E ++            V  +G +ALHIA
Sbjct: 65  IPILLD-----------------IAEKTGNMREFINS-------PFRDVYYRGQTALHIA 100

Query: 241 TRKGRVQIVQKLL----NINGVDKAVINKSR---------ETALDTAEKTGHSEIGVILK 287
             +     V+ L+    +++   +    + +         E  L  A  T    I   L 
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160

Query: 288 EHG 290
           E+G
Sbjct: 161 ENG 163

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  109 bits (276), Expect = 1e-28
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
             S +  L  AA  G V+ VR+++       AG       R G     +    G  +V +
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLE------AGADPNALNRFGRRPIQVMM-MGSAQVAE 61

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           +L+    E      ++ T  +H A+ +G ++ +  L   G+ L  +  + G+  +  A  
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEE 120

Query: 175 NGHLEIVKALLSK 187
            GH +I + L + 
Sbjct: 121 QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  106 bits (268), Expect = 1e-27
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALL 185
             S+   L TA+++G VE V+ LLE G   A        G+  +      G  ++ + LL
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAG---ADPNALNRFGRRPIQVMM-MGSAQVAELLL 64

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
                    +       +H A +   ++ +  L +     +++ DA G   + +A  +G 
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGH 123

Query: 246 VQIVQKLLNINGVD 259
             I + L      D
Sbjct: 124 RDIARYLHA-ATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  104 bits (262), Expect = 8e-27
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           +   +       AA +G +E ++ L+E  A P      +      +      G  +V + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVM-MMGSAQVAEL 62

Query: 150 LLEKGSTLATI--ARSNGKT-ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 206
           LL  G   A    A     T  +H AAR G L+ +  L      + +  D  G+  + +A
Sbjct: 63  LLLHG---AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLA 118

Query: 207 VKGQSIELVDELVK 220
            +    ++   L  
Sbjct: 119 EEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 98.3 bits (246), Expect = 1e-24
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            +    L +AA  G +E V+ LL    G      ++ G+  + + + G S ++ + L+  
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMMG-SAQVAELLLLH 66

Query: 222 EPVIINMVDAKGN-SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280
                N  D       +H A R+G +  +  L    G    V +      +D AE+ GH 
Sbjct: 67  G-AEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHR 124

Query: 281 EIGVILKEHG 290
           +I   L    
Sbjct: 125 DIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.7 bits (125), Expect = 3e-08
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
           I+M+    ++ L  A  +G+V+ V++LL   G D   +N+     +      G +++  +
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 286 LKEHG 290
           L  HG
Sbjct: 63  LLLHG 67

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 37/97 (38%)

Query: 59  NQSGET-ALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
           + +  T  ++ AA  G++D +  + R      A +   +           G         
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAG----ARLDVCD---------AWGR-------- 112

Query: 118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
                            +  A  QGH ++ ++L    
Sbjct: 113 ---------------LPVDLAEEQGHRDIARYLHAAT 134

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  108 bits (272), Expect = 2e-28
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPG 190
                A   G ++ VK  + KG     +      G+  LH AA  G LEI++ LL K   
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKG---EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
           I   N  DK   T L  AV    +  V  L+        +    G +A      +    +
Sbjct: 66  I---NAPDKHHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAIKAL 121

Query: 249 VQ 250
           +Q
Sbjct: 122 LQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  105 bits (265), Expect = 2e-27
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEV 112
            +    +     A + G +D V++ +        G         G    H AA  G LE+
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVA------KGEDVNRTLEGGRKPLHYAADCGQLEI 55

Query: 113 LKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA--TIARSNGKTA 168
           L+ L+   A        D  + T L +A  +GHV  VK LL KG   A  T+   +G TA
Sbjct: 56  LEFLLLKGADIN---APDKHHITPLLSAVYEGHVSCVKLLLSKG---ADKTVKGPDGLTA 109

Query: 169 LHSAARNGHLEIVK 182
             +        +++
Sbjct: 110 FEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  100 bits (251), Expect = 2e-25
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE 222
           S        A +NG L+ VK  ++K   +     + G+  LH A     +E+++ L+   
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 223 PVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
              IN  D    + L  A  +G V  V+ LL+  G DK V      TA +  +      +
Sbjct: 64  -ADINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.3 bits (145), Expect = 4e-11
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
                     A+K   ++ V + V      +N     G   LH A   G+++I++ LL  
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLL- 61

Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
            G D    +K   T L +A   GH     +L   G
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
           + +  +     A + G +  V+  +   G D     +     L  A   G  EI   L  
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 289 HG 290
            G
Sbjct: 62  KG 63

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  108 bits (273), Expect = 3e-28
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 11/128 (8%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPG 190
             L  A+  G  + V+ L+  G   A + A+   G T L+ A  +GHLEIV+ LL     
Sbjct: 16  KKLLEAARAGQDDEVRILMANG---ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
           +   N  D  G T LH+A     +E+ + L+K     +N  D  G +A  I+   G   +
Sbjct: 73  V---NAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDL 128

Query: 249 VQKLLNIN 256
            + L  +N
Sbjct: 129 AEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  101 bits (254), Expect = 1e-25
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 25/136 (18%)

Query: 96  NGYDAFHIAAKQGCLEVLKILM-------EALPELLMTFDSSNTTALHTASSQGHVEVVK 148
           +       AA+ G  + ++ILM                 D    T L+ A++ GH+E+V+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAK--------DEYGLTPLYLATAHGHLEIVE 64

Query: 149 FLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALH 204
            LL+ G   A + A    G T LH AA  GHLEI + LL     +   N  DK G+TA  
Sbjct: 65  VLLKNG---ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV---NAQDKFGKTAFD 118

Query: 205 MAVKGQSIELVDELVK 220
           +++   + +L + L K
Sbjct: 119 ISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 96.3 bits (241), Expect = 7e-24
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 26/136 (19%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILM-- 117
               L  AA  G  D VR ++       A + A++  G    ++A   G LE++++L+  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANG----ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 118 -----EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALH 170
                          D+   T LH A+  GH+E+ + LL+ G   A + A+   GKTA  
Sbjct: 70  GADVNAV--------DAIGFTPLHLAAFIGHLEIAEVLLKHG---ADVNAQDKFGKTAFD 118

Query: 171 SAARNGHLEIVKALLS 186
            +  NG+ ++ + L  
Sbjct: 119 ISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.9 bits (240), Expect = 9e-24
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 5/128 (3%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           S+    L  AAR G  + V+ L++   G  V   D+ G T L++A     +E+V+ L+K 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281
               +N VDA G + LH+A   G ++I + LL  +G D    +K  +TA D +   G+ +
Sbjct: 70  G-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNED 127

Query: 282 IGVILKEH 289
           +  IL++ 
Sbjct: 128 LAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
           +  G T L++AA  G++++   ++++     A +  + + G  AF I+   G  ++ +IL
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHG----ADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

Query: 117 ME 118
            +
Sbjct: 133 QK 134

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  105 bits (265), Expect = 2e-27
 Identities = 42/121 (34%), Positives = 53/121 (43%), Gaps = 15/121 (12%)

Query: 90  AGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVV 147
               +++G    H AAK G  E +K L+   A             T LH A+  GH E+V
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIV 58

Query: 148 KFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTAL 203
           K LL KG   A + ARS  G T  H A +NGH EIVK L +K   +   N          
Sbjct: 59  KLLLAKG---ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV---NARSWGSSHHH 112

Query: 204 H 204
           H
Sbjct: 113 H 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 95.5 bits (239), Expect = 7e-24
 Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 158 ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELV 215
                 +G T LH+AA+NGH E VK LLSK   +   N   K G T LH+A K    E+V
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIV 58

Query: 216 DELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
             L+      +N     GN+  H+A + G  +IV+ L    G D    +       
Sbjct: 59  KLLLAKG-ADVNARSKDGNTPEHLAKKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           GN+ LH A + G  + V+KLL+  G D    +K   T L  A K GH+EI  +L   G
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  103 bits (257), Expect = 2e-24
 Identities = 40/252 (15%), Positives = 87/252 (34%), Gaps = 25/252 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
               E  L     +  +  +   +    ++       +     H++      EV      
Sbjct: 60  KMKLEAFLQRLL-FPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNG 176
               L +  D    T LH  +S  ++E+VK L++ G   +     +  G++ L  A ++ 
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG---SNRLYGDNMGESCLVKAVKSV 175

Query: 177 H---LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE------------LVDELVKV 221
           +       +ALL      ++  D   +T LH  +    +             L+  +VK 
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETALDTAEKTG 278
           +   I         +        R   + + L++  +   ++N    + +T L+ A + G
Sbjct: 236 QNRPIQSGTN-EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

Query: 279 HSEIGVILKEHG 290
           +  I   L ++G
Sbjct: 295 NISIVDALLDYG 306

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 95.9 bits (238), Expect = 6e-22
 Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 36/226 (15%)

Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQG---CLE 111
            +++ G T L+       +++V+ ++++     +     +  G      A K        
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHG----SNRLYGDNMGESCLVKAVKSVNNYDSG 181

Query: 112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
             + L++ L   L+  DS N T LH                          ++G T   +
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHI----------------------IITSGMTGCSA 219

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI---INM 228
           AA+  +L+I+   + K+    +++    + +      G+  + + E + ++ +I   +N 
Sbjct: 220 AAK-YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA 274
            D+ G++ L+IA R G + IV  LL+  G D  + NKS    +D  
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.0 bits (202), Expect = 3e-17
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 26/188 (13%)

Query: 44  SSYGDMELREML-------SKMNQSGETALYVAAEYG---YVDMVREMIRYHDTSLAGIK 93
           +S  ++EL + L          +  GE+ L  A +            ++ Y    L  ++
Sbjct: 139 TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI-LE 197

Query: 94  ARNGYDAFHIAA----KQGCLEVLKILMEALPELLMTF--------DSSNTTALHTASSQ 141
                   H         GC    K  ++ L   ++           +   +  +  + +
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 142 GHVEVVKFLLEKGSTLATI-AR-SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199
               +++ L  K      + A+ SNG T L+ AAR G++ IV ALL       + N K G
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN-KSG 316

Query: 200 QTALHMAV 207
              +    
Sbjct: 317 LRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 16/247 (6%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
                  L         E+   L    S   +   S+ +   H +  +   E+  A  + 
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG--- 244
           +  + +  D+ G T LH      ++ELV  LVK         D  G S L  A +     
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNY 178

Query: 245 RVQIVQKLLNINGVDKAVINKSRETAL----DTAEKTGHSEIGVILKEHGVPCGKSIKPQ 300
                + LL+       + +    T L     T+  TG S       +  +  G  +K Q
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILM--GWIVKKQ 236

Query: 301 ANSARELKQAVSDIKHEVHDQ-LEHTRETRKHVHGIAKRINKMHTEG---LNNAI--NST 354
               +          ++ + +  +   E       IA  +N   + G   LN A    + 
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296

Query: 355 TVVAVLI 361
           ++V  L+
Sbjct: 297 SIVDALL 303

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 95.7 bits (239), Expect = 5e-24
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--A 161
            +          L+     +     S     L  A+  G  + V+ L+  G   A +   
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANG---ADVAAK 53

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
             NG T LH AARNGHLE+VK LL     +  + DK G+TA  +++   + +L + L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.5 bits (228), Expect = 2e-22
 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 40/150 (26%)

Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
            SS  H      L+ +G   + +  S+    L  AAR G  + V+ L++           
Sbjct: 1   GSSHHHHHHSSGLVPRG---SHM-GSDLGKKLLEAARAGQDDEVRILMANG--------- 47

Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
                             D         +   D  G++ LH+A R G +++V+ LL   G
Sbjct: 48  -----------------AD---------VAAKDKNGSTPLHLAARNGHLEVVKLLLE-AG 80

Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
            D    +K  +TA D +   G+ ++  IL+
Sbjct: 81  ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 45/147 (30%)

Query: 44  SSYGDMELREML----SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD 99
           SS+        L    S M       L  AA  G  D VR ++             NG D
Sbjct: 2   SSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILM------------ANGAD 49

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
              +AAK                     D + +T LH A+  GH+EVVK LLE G   A 
Sbjct: 50  ---VAAK---------------------DKNGSTPLHLAARNGHLEVVKLLLEAG---AD 82

Query: 160 IARSN--GKTALHSAARNGHLEIVKAL 184
           +   +  GKTA   +  NG+ ++ + L
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 39/119 (32%)

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
            + + H      L+ +                     G  +                  +
Sbjct: 1   GSSHHHHHHSSGLVPR---------------------GSHM-----------------GS 22

Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
                L  A R G+   V+ L+  NG D A  +K+  T L  A + GH E+  +L E G
Sbjct: 23  DLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.7 bits (237), Expect = 8e-24
 Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 10/96 (10%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           NG    H+AA+ G LEV+K+L+E  A        D +  T LH A+  GH+EVVK LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK 187
           G   A +     NG+T LH AARNGHLE+VK LL  
Sbjct: 58  G---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.3 bits (236), Expect = 1e-23
 Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 10/93 (10%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           T LH A+  GH+EVVK LLE G   A +     NG+T LH AARNGHLE+VK LL     
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           +   N  DK G+T LH+A +   +E+V  L++ 
Sbjct: 61  V---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.2 bits (207), Expect = 8e-20
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 6/92 (6%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           NG+T LH AARNGHLE+VK LL     +   N  DK G+T LH+A +   +E+V  L++ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
               +N  D  G + LH+A R G +++V+ LL
Sbjct: 58  G-ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.2 bits (181), Expect = 3e-16
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 15/100 (15%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKIL 116
           +G T L++AA  G++++V+ ++       AG     K +NG    H+AA+ G LEV+K+L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
           +E  A        D +  T LH A+  GH+EVVK LLE G
Sbjct: 55  LEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 66.6 bits (162), Expect = 3e-12
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 198 KGQTALHMAV---KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
             +  LH+AV      S+ LVD ++      ++   A GN+ALH A    +   + KLL 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCL-KLLL 246

Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
                   +N++ ETALD A K  H E   +L++
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 121 PELLMTFDSSNTTALHTASSQGH---VEVVKFLLEKGSTLATIARSNGKTALHSAARNGH 177
           P       +     LH A    +   + +V F+++ G  L     ++G TALH AA    
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQ 238

Query: 178 LEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
            + +K LL      G V   ++ G+TAL +A K    E  + L +
Sbjct: 239 PDCLKLLLKGRALVGTV---NEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 22/116 (18%)

Query: 100 AFHIAAKQGCLEVLKILMEALPELLM-------TFDSSNTTALHTASSQGHVEVVKFLLE 152
             H+A K      L ++     + ++          +   TALH A+     + +K LL+
Sbjct: 193 VLHLAVKVANQASLPLV-----DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
             + +       G+TAL  A +  H E            +L   + G  A  + V 
Sbjct: 248 GRALV-GTVNEAGETALDIARKKHHKECE---------ELLEQAQAGTFAFPLHVD 293

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 195 NDKKGQTALHMAVKG--QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
             +  +TALH+AV+   ++   + + +      ++    KG++ALH        + + KL
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KL 223

Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
           L        + N+S ET LD A++  H     +L +
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 128 DSSNTTALHTASSQG---HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
              + TALH A        + +V FL++    L       G TALH      + E +K L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 185 LSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           L       I    ++ G+T L +A + +     + L +
Sbjct: 225 LRGKASIEIA---NESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 161 ARSNGKTALHSAARNGHLEIVKA--LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
                +TALH A R+     +     L +  G + +   KG TALH      + E +  L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 219 VKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
           ++     I + +  G + L IA R       + L  
Sbjct: 225 LR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 31  VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG--YVDMVREMIRYHDTS 88
           V+T  +  +L   +   D+  +  L+  ++  ETAL++A          + + +  +  +
Sbjct: 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN 197

Query: 89  LAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEV 146
           L   +   G  A H        E LK+L+   A  E+    + S  T L  A    H   
Sbjct: 198 L-DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA---NESGETPLDIAKRLKHEHC 253

Query: 147 VKFLLE 152
            + L +
Sbjct: 254 EELLTQ 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 9/173 (5%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRN-DKKGQTALHMAVKGQSIELVDELVKV 221
             G     ++     L  +   L+    +   N  +   T L  A    S+   + L+  
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-Q 256

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281
               +N  D+ G   LH AT  G   +    L   G D    +      L  A +T +++
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANAD 315

Query: 282 IGVILKEHGVPCGKSIKPQANSARELKQAV----SDIKHEVHDQLEHTRETRK 330
           I  +L+       ++   Q  +  E    +    S +  +  ++L        
Sbjct: 316 IVTLLRL--AKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLH 366

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
              N T L  A++   +   +FLL+ G+ +   A S G+  LH A   GH  +    L +
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
              +  R D +G+  L +A++  + ++V  L 
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
             A     L   + L++    +    DS+    LH A+  GH  +    L++G+ L    
Sbjct: 240 IQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKRGADL-GAR 297

Query: 162 RSNGKTALHSAARNGHLEIVKALL 185
            S G+  L  A    + +IV  L 
Sbjct: 298 DSEGRDPLTIAMETANADIVTLLR 321

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 169 LHSAARNGHLEIVKALL-----SKEPGIVLRNDKKGQTALHMAVK---GQSIELVDELVK 220
           L +A  N  L  V           +P          +  LH+AVK     S+ LVD +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280
                ++   A GN+ALH A    +   + KLL         +N++ ETALD A K  H 
Sbjct: 196 -NGGHLDAKAADGNTALHYAALYNQPDCL-KLLLKGRALVGTVNEAGETALDIARKKHHK 253

Query: 281 EIGVILK 287
           E   +L+
Sbjct: 254 ECEELLE 260

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 116 LMEALPELLMTFDSSNTTALHTA---SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
             + LP       +     LH A   ++Q  + +V F+++ G  L   A ++G TALH A
Sbjct: 158 FGQPLPG--PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYA 214

Query: 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           A     + +K LL     +   N + G+TAL +A K    E  + L + + 
Sbjct: 215 ALYNQPDCLKLLLKGRALVGTVN-EAGETALDIARKKHHKECEELLEQAQA 264

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 12  KKMKKQLTAKRDDTP--LQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVA 69
           K ++ +   +    P  L + +    +  VL+  ++  D              E  L++A
Sbjct: 119 KYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA 178

Query: 70  ---AEYGYVDMVREMIRYHDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILME--ALPE 122
              A    + +V  +I+        + A+  +G  A H AA     + LK+L++  AL  
Sbjct: 179 VKVANQASLPLVDFIIQNG----GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234

Query: 123 LLMTFDSSNTTALHTASSQGHVEVVKFL 150
            +   + +  TAL  A  + H E  + L
Sbjct: 235 TV---NEAGETALDIARKKHHKECEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 61/395 (15%), Positives = 114/395 (28%), Gaps = 129/395 (32%)

Query: 11  WKKMKKQLTAKRDDTPLQSLVRTGSVELV--LDMISSY------GDMELREMLSKMNQSG 62
           W  +K   + +     LQ L+           D  S+          ELR +L   ++  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPY 243

Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
           E  L V      +  V+      +            +AF++     C    KIL      
Sbjct: 244 ENCLLV------LLNVQ------NAKAW--------NAFNL----SC----KIL------ 269

Query: 123 LLMTFDSSNTTALHTASSQGHVEVVKFL--LEKGSTLATIARSNGKTALHSAARNGHLEI 180
            L T     T  L +A++  H+ +      L      +                      
Sbjct: 270 -LTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKS---------------------- 305

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
              LL K               L    +    +L  E++   P  ++++           
Sbjct: 306 ---LLLK--------------YLDCRPQ----DLPREVLTTNPRRLSIIAES-------- 336

Query: 241 TRKGRVQIVQKLLNINGVDK--AVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 298
            R G         ++N  DK   +I  S    L+ AE     +   +           I 
Sbjct: 337 IRDGLATW-DNWKHVN-CDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPS-AH----IP 388

Query: 299 PQANS---ARELKQAVSDIKHEVHDQL---EHTRETRKHVHGIAKRINKMHTEGLNNAIN 352
               S      +K  V  + +++H      +  +E+   +  I   + K+  E      N
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLE------N 441

Query: 353 STTVVAVLIATVAFAAIFSVPGQFADKPDELPPKV 387
              +   ++        +++P  F D  D +PP +
Sbjct: 442 EYALHRSIVDH------YNIPKTF-DSDDLIPPYL 469

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	537
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.61
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.59

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-41  Score=330.60  Aligned_cols=262  Identities=26%  Similarity=0.352  Sum_probs=238.3

Q ss_pred             CCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcc-cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChH
Q 009331           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKM-NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA  100 (537)
Q Consensus        22 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~-~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~  100 (537)
                      +|.||||.|++.|+.+++++|++.+.+.      +.. +..|.||||+|+..|+.+++++|++.+.  +.+..+..|.||
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~   75 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANV------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA--DPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCH
Confidence            5789999999999999999999998764      333 7789999999999999999999999874  456678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccccc---------ccCCCcHHHH
Q 009331          101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA---------RSNGKTALHS  171 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~---------~~~g~tpL~~  171 (537)
                      ||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+++|+++....         +..|.||||.
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHH
Confidence            99999999999999999999887644 8899999999999999999999999998874321         6789999999


Q ss_pred             HHHCCcHHHHHHHHhc-CCCCcccCCCCCChHHHHHHhcCC----HHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcH
Q 009331          172 AARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQS----IELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (537)
Q Consensus       172 A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~  246 (537)
                      |+..|+.+++++|++. +.+ ....|..|.||||.|+..++    .+++++|++ .+.+++.+|..|+||||+|+..|+.
T Consensus       155 A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~  232 (285)
T 1wdy_A          155 AAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            9999999999999998 555 45568999999999999999    999999999 5677899999999999999999999


Q ss_pred             HHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331          247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG  294 (537)
Q Consensus       247 ~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~  294 (537)
                      +++++|++..|++++.+|..|.|||++|+..++.+++++|+++|+++.
T Consensus       233 ~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            999999997899999999999999999999999999999999999864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-40  Score=335.61  Aligned_cols=264  Identities=25%  Similarity=0.329  Sum_probs=195.5

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHccc-CCCCcHHHHHHHcCCHHHHHHHHHhCCcc-------
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMIRYHDTS-------   88 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~-~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~-------   88 (537)
                      ...+.+|.|+||.||+.|++++|+.||++|.++      +.++ ..|.||||+|+..|+.++|++|++++...       
T Consensus        19 ~~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadv------n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~   92 (337)
T 4g8k_A           19 RRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANV------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG   92 (337)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCC------CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC
Confidence            344556889999999999999999999999875      3334 45999999999999999999999987532       


Q ss_pred             ------------------------cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhh---------cCCCCCChHH
Q 009331           89 ------------------------LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM---------TFDSSNTTAL  135 (537)
Q Consensus        89 ------------------------~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~---------~~d~~g~tpL  135 (537)
                                              +.+..+..|.||||.|+..|+.+++++|++.+.++..         ..+..|.|||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L  172 (337)
T 4g8k_A           93 ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  172 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred             CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence                                    2334566677788888888888888887777665421         2245577788


Q ss_pred             HHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHCCc----HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          136 HTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGH----LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       136 h~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      |+|+..|+.+++++|+++ |+++ +..|..|.||++.++..+.    .+++++|++++.++.. .|..|+||||+|+..|
T Consensus       173 ~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-~d~~g~t~L~~a~~~~  250 (337)
T 4g8k_A          173 MDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKK  250 (337)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC-CCGGGCCHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhh
Confidence            888888888888877754 6665 5567777777776664332    3567777777777543 4677778888888888


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      +.++++.|++..+.++|.+|.+|+||||+|+..|+.+++++|++ .|++++..     +||++|+..|+.+++++|+++|
T Consensus       251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          251 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCc
Confidence            88888877776677777778888888888888888888888877 57776543     4788888888888888888888


Q ss_pred             CCCC
Q 009331          291 VPCG  294 (537)
Q Consensus       291 a~~~  294 (537)
                      |++.
T Consensus       325 A~~d  328 (337)
T 4g8k_A          325 AKED  328 (337)
T ss_dssp             CCC-
T ss_pred             CCCC
Confidence            7764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-39  Score=339.90  Aligned_cols=264  Identities=26%  Similarity=0.387  Sum_probs=146.5

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      +..+.+|.||||+|++.|+.+++++|++.+.++      +..+..|.||||+|+..|+.++|++|++.+.  .....+..
T Consensus        74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~  145 (437)
T 1n11_A           74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP------NLATTAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKK  145 (437)
T ss_dssp             SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTT
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--CCcCCCCC
Confidence            446678889999999999999999999888653      3345566666666666666666666666542  22334555


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      |.||||.|+..|+.+++++|++.+.+.... +..|.||||+|+..|+.+++++|++++.++ ...+.+|.||||+|+..|
T Consensus       146 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  223 (437)
T 1n11_A          146 GFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQN  223 (437)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            666666666666666666666665544332 455555555555555555555555555544 333444555555555555


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN  256 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  256 (537)
                      +.+++++|++.+.+.. ..+..|.||||.|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|++ .
T Consensus       224 ~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~  300 (437)
T 1n11_A          224 QVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-H  300 (437)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred             CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-C
Confidence            5555555555544432 223444555555555555555555544 233344444444444444444444444444444 3


Q ss_pred             CCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       257 g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      |++++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus       301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~  337 (437)
T 1n11_A          301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  337 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence            4444444444444444444444444444444444443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-39  Score=337.83  Aligned_cols=270  Identities=26%  Similarity=0.334  Sum_probs=238.6

Q ss_pred             hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR   95 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   95 (537)
                      .+..+..|.||||+|+..|+.++|++|++++.++      +..+..|.||||+|+..|+.++|++|++.+.  +.+..+.
T Consensus         7 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~   78 (437)
T 1n11_A            7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP------NVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAK   78 (437)
T ss_dssp             --------CCHHHHHHHHTCHHHHHHHHHTTCCS------CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC--CSSCCCT
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCCCC
Confidence            3467889999999999999999999999998764      4568899999999999999999999999874  4566788


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  175 (537)
                      .|.||||+|+..|+.+++++|++.+++.... +..|.||||+|+..|+.+++++|++++.+. ...+..|.||||.|+..
T Consensus        79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~  156 (437)
T 1n11_A           79 DDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKY  156 (437)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHc
Confidence            9999999999999999999999999886644 889999999999999999999999999886 55678899999999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331          176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI  255 (537)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  255 (537)
                      |+.+++++|++++.++.. .+..|.||||.|+..|+.+++++|++. +..++..+.+|.||||+|+..|+.+++++|++ 
T Consensus       157 g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-  233 (437)
T 1n11_A          157 GKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-  233 (437)
T ss_dssp             TCHHHHHHHHHTTCCTTC-CCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             CCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence            999999999999988654 478999999999999999999999994 55678889999999999999999999999998 


Q ss_pred             cCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCC
Q 009331          256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK  298 (537)
Q Consensus       256 ~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~  298 (537)
                      .|++++..+..|.|||++|+..|+.+++++|+++|++......
T Consensus       234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  276 (437)
T 1n11_A          234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK  276 (437)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC
Confidence            7899999999999999999999999999999999988755433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=322.73  Aligned_cols=265  Identities=20%  Similarity=0.189  Sum_probs=205.0

Q ss_pred             ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchh-----HHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 009331           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDME-----LREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI   92 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   92 (537)
                      .-...|.|+||+|+..|+.+.+..++..++...     +...+...+..|.||||+|+..|+.++|++|++.+  .+.+.
T Consensus        10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~   87 (285)
T 3d9h_A           10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNI   87 (285)
T ss_dssp             --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCE
T ss_pred             ccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCC
Confidence            344678999999999999888888766543200     01224667899999999999999999999999987  44667


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  172 (537)
                      .+.+|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.|+++.  .+.+|.||||+|
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A  164 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEA  164 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHH
Confidence            8899999999999999999999999998876644 8899999999999999999999999999874  345699999999


Q ss_pred             HHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL  252 (537)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  252 (537)
                      +..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++. +.+++ .|..|+||||+|+..++.+++++|
T Consensus       165 ~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          165 ARRGHVECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTASEELACLL  241 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC-CBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999988654 478999999999999999999999995 56667 489999999999999999999999


Q ss_pred             hhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc-CCCC
Q 009331          253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH-GVPC  293 (537)
Q Consensus       253 l~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~-ga~~  293 (537)
                      ++ .|++++.+|..|.|||++|+  ++.+++++|+++ |++.
T Consensus       242 l~-~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          242 MD-FGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             HH-TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             HH-CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence            99 79999999999999999999  557899999998 6554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-40  Score=335.66  Aligned_cols=263  Identities=19%  Similarity=0.238  Sum_probs=228.2

Q ss_pred             hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHccc-CCCCcHHHHHHHcCCHHHHHHHH--------HhCC
Q 009331           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMI--------RYHD   86 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~-~~g~t~L~~Aa~~g~~~iv~~Ll--------~~~~   86 (537)
                      ....+..|.||||.|+..|+ ++++.|+...        ++..+ ..|.||||+|+..|+.+++++|+        +.+ 
T Consensus        87 ~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g-  156 (373)
T 2fo1_E           87 PTEPEPESPIKLHTEAAGSY-AITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG-  156 (373)
T ss_dssp             -------CCCHHHHHHHSSS-CCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC-
T ss_pred             ccCCCCCCccHHHHHhcCCc-hHHHHhcccc--------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-
Confidence            34567889999999999665 7777775532        34456 78999999999999998888877        554 


Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcC---CCccccccc
Q 009331           87 TSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG---STLATIARS  163 (537)
Q Consensus        87 ~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~---~~~~~~~~~  163 (537)
                       .+.+..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++++   .++ ...|.
T Consensus       157 -a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~  233 (373)
T 2fo1_E          157 -ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDR  233 (373)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCT
T ss_pred             -CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCC
Confidence             456678899999999999999999999999999887644 889999999999999999999999987   454 56788


Q ss_pred             CCCcHHHHHHHCC---cHHHHHHHHhcCCCCcc-------cCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCC
Q 009331          164 NGKTALHSAARNG---HLEIVKALLSKEPGIVL-------RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG  233 (537)
Q Consensus       164 ~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G  233 (537)
                      +|.||||+|+..|   +.+++++|++.+.++..       ..|..|.||||+|+..|+.+++++|++.++.+++.+|.+|
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            9999999999998   89999999999988754       2467899999999999999999999998878999999999


Q ss_pred             CcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          234 NSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       234 ~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      +||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999999999999 7999999999999999999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.9e-38  Score=315.95  Aligned_cols=273  Identities=24%  Similarity=0.297  Sum_probs=237.8

Q ss_pred             hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR   95 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   95 (537)
                      ...++..+.++||.|++.|+.+.++.++...+.     .++..|..|.||||+|+..|+.++|++|++.+  .+.+..+.
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~   89 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNV-----NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDK   89 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTT-----TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCT
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCC-----CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCC
Confidence            456677888999999999999999999987432     14567889999999999999999999999987  44666889


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHH----
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS----  171 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~----  171 (537)
                      .|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+++|+++ ...+..|.+|++.    
T Consensus        90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~  167 (351)
T 3utm_A           90 GGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTP  167 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhh
Confidence            9999999999999999999999999887654 889999999999999999999999999987 5678888888765    


Q ss_pred             -----------------HHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhc---CCHHHHHHHHhcCCcccccccC
Q 009331          172 -----------------AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVDA  231 (537)
Q Consensus       172 -----------------A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~n~~d~  231 (537)
                                       ++..++.+.+..++...... ...+..|.||||.|+..   +..+++++|++ .+.+++.+|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~  245 (351)
T 3utm_A          168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNK  245 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCT
T ss_pred             hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCC
Confidence                             45677777787777765543 33468899999999998   56899999999 5677899999


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCCc
Q 009331          232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ  300 (537)
Q Consensus       232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~  300 (537)
                      +|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++.......
T Consensus       246 ~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g  313 (351)
T 3utm_A          246 DFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG  313 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence            99999999999999999999998 799999999999999999999999999999999999876554433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.6e-39  Score=329.17  Aligned_cols=268  Identities=19%  Similarity=0.203  Sum_probs=224.4

Q ss_pred             HHHHhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc
Q 009331           11 WKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLA   90 (537)
Q Consensus        11 ~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~   90 (537)
                      ..++.....|.+|.||||+|+..|+.++|++|++.+.+.      +..|..|.||||+|+..|+.++|++|++.+.    
T Consensus         8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----   77 (364)
T 3ljn_A            8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP------TIQNRFGCTALHLACKFGCVDTAKYLASVGE----   77 (364)
T ss_dssp             --------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----
T ss_pred             ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----
Confidence            344556778889999999999999999999999998763      5678899999999999999999999999875    


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHh----CChhhh----------------cCCCCCChHHHHHHhCC--CHHHHH
Q 009331           91 GIKARNGYDAFHIAAKQGCLEVLKILMEA----LPELLM----------------TFDSSNTTALHTASSQG--HVEVVK  148 (537)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~----~~~~~~----------------~~d~~g~tpLh~A~~~g--~~~iv~  148 (537)
                      ...+.+|.||||+|+..|+.+++++|++.    +.....                ..|..|.||||+|+..|  +.++++
T Consensus        78 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~  157 (364)
T 3ljn_A           78 VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK  157 (364)
T ss_dssp             CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred             CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence            23345899999999999999999999998    544433                14678999999999999  999999


Q ss_pred             HHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCC----cccCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 009331          149 FLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI----VLRNDKKGQTALHMAVKGQSIELVDELVKVEPV  224 (537)
Q Consensus       149 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  224 (537)
                      +|++.|+++ ...|..|.||||+|+..|+.+++++|++.+++.    .+..|..|.||||+|+..|+.+++++|++ .+.
T Consensus       158 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga  235 (364)
T 3ljn_A          158 ILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGI  235 (364)
T ss_dssp             HHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTC
T ss_pred             HHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCC
Confidence            999999987 667889999999999999999999999998872    34558899999999999999999999999 577


Q ss_pred             ccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCccc------------ccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331          225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV------------INKSRETALDTAEKTGHSEIGVILKEHGV  291 (537)
Q Consensus       225 ~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~------------~~~~g~t~L~~A~~~~~~~i~~~L~~~ga  291 (537)
                      +++.+|.+|+||||+|+..|+.+++++|++. |.+++.            .+..+.||++.|+..++.+.+..|++.++
T Consensus       236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~  313 (364)
T 3ljn_A          236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL  313 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence            7899999999999999999999999999984 555432            56678889998988887776666665543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.4e-38  Score=301.18  Aligned_cols=214  Identities=22%  Similarity=0.276  Sum_probs=163.5

Q ss_pred             cCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHH
Q 009331           72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL  151 (537)
Q Consensus        72 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  151 (537)
                      .++.+++++|++.+... ....+..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+
T Consensus        33 ~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll  110 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILI  110 (253)
T ss_dssp             --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCChHHHHHHHHccCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34788888888876432 2335778888888888888888888888888776544 778888888888888888888888


Q ss_pred             HcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccC
Q 009331          152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA  231 (537)
Q Consensus       152 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~  231 (537)
                      +.+.......+.+|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|.
T Consensus       111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~  188 (253)
T 1yyh_A          111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNN  188 (253)
T ss_dssp             HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC
Confidence            888744466778888888888888888888888888877554 47888899999999999999999998 4667888899


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      .|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..|+.+++++|....
T Consensus       189 ~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          189 REETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            99999999999999999999998 68899999999999999999999999999888754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1e-37  Score=297.87  Aligned_cols=233  Identities=24%  Similarity=0.295  Sum_probs=193.4

Q ss_pred             HHcccCCCCcHHHHHHHcCCHHHHHHHHHh--CCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCC
Q 009331           55 LSKMNQSGETALYVAAEYGYVDMVREMIRY--HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT  132 (537)
Q Consensus        55 l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~  132 (537)
                      ++.+|.+|.||||+|+..|+.+++++|++.  ....+.+..+..|.||||+|+..|+.+++++|++.+.++... |..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCC
Confidence            356788899999999999999999988872  112455667888999999999999999999999988776544 78899


Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCC----CcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh
Q 009331          133 TALHTASSQGHVEVVKFLLEKGS----TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK  208 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  208 (537)
                      ||||+|+..|+.+++++|++.++    ++ ...+..|.||||.|+..|+.+++++|++.+++.....+..|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            99999999999999999999887    43 55678899999999999999999999999988766544789999999999


Q ss_pred             cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       209 ~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      .|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..++.++++.|.+
T Consensus       160 ~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          160 NNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            999999999998 467789999999999999999999999999998 799999999999999999999999999998887


Q ss_pred             cCC
Q 009331          289 HGV  291 (537)
Q Consensus       289 ~ga  291 (537)
                      .++
T Consensus       238 ~~a  240 (241)
T 1k1a_A          238 RPA  240 (241)
T ss_dssp             ---
T ss_pred             CCC
Confidence            654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2e-37  Score=298.87  Aligned_cols=231  Identities=22%  Similarity=0.240  Sum_probs=179.2

Q ss_pred             hhccCCCCCChHHHHHHcC-------------CHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009331           16 KQLTAKRDDTPLQSLVRTG-------------SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI   82 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll   82 (537)
                      .+.+|.+|.||||+|+..|             +.++++.|++.+.+.     ....|..|.||||+|+..|+.++|++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   77 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRLL   77 (253)
T ss_dssp             ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-----ccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            4567899999999999987             899999999998643     3456889999999999999999999999


Q ss_pred             HhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccc
Q 009331           83 RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR  162 (537)
Q Consensus        83 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (537)
                      +.+  .+.+..+..|.||||+|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.|+++ ...|
T Consensus        78 ~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d  154 (253)
T 1yyh_A           78 EAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVD  154 (253)
T ss_dssp             HTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBC
T ss_pred             HcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcC
Confidence            987  4456678999999999999999999999999998666667899999999999999999999999999987 6678


Q ss_pred             cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH
Q 009331          163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (537)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~  242 (537)
                      .+|.||||+|+..|+.+++++|++++.++.. .|..|.||||+|+.+|+.+++++|++ .+.+++.+|..|+||||+|+.
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~  232 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQE  232 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHH
Confidence            8999999999999999999999999998654 48899999999999999999999999 567789999999999999999


Q ss_pred             hCcHHHHHHHhhhc
Q 009331          243 KGRVQIVQKLLNIN  256 (537)
Q Consensus       243 ~~~~~iv~~Ll~~~  256 (537)
                      +|+.+++++|....
T Consensus       233 ~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          233 RMHHDIVRLLDLEH  246 (253)
T ss_dssp             TTCHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998743

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.8e-36  Score=293.82  Aligned_cols=235  Identities=26%  Similarity=0.328  Sum_probs=214.3

Q ss_pred             CCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCCh
Q 009331           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (537)
Q Consensus        20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (537)
                      +..|.||||+|+..|+.+++++|++.+.++      +..+..|.||||+|+..|+.+++++|++.+  .+.+..+..|.|
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t  107 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADP------VLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFT  107 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTCCB
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCcccCC
Confidence            677899999999999999999999998764      456889999999999999999999999987  445667889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCChhhhcC---------CCCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHH
Q 009331          100 AFHIAAKQGCLEVLKILMEALPELLMTF---------DSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTAL  169 (537)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL  169 (537)
                      |||.|+..|+.+++++|++.+.+.....         +..|.||||+|+..|+.+++++|++. +.++ ...+..|.|||
T Consensus       108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l  186 (285)
T 1wdy_A          108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNAL  186 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHH
Confidence            9999999999999999999988765432         67899999999999999999999998 7776 66788999999


Q ss_pred             HHHHHCCc----HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCc
Q 009331          170 HSAARNGH----LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (537)
Q Consensus       170 ~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~  245 (537)
                      |.|+..++    .+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+..|+
T Consensus       187 ~~a~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~  265 (285)
T 1wdy_A          187 IHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             HHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHccccchHHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc
Confidence            99999999    999999999998865 4488999999999999999999999997888899999999999999999999


Q ss_pred             HHHHHHHhhhcCCCcccccC
Q 009331          246 VQIVQKLLNINGVDKAVINK  265 (537)
Q Consensus       246 ~~iv~~Ll~~~g~~~~~~~~  265 (537)
                      .+++++|++ .|++++.+|.
T Consensus       266 ~~i~~~Ll~-~Ga~~~~~d~  284 (285)
T 1wdy_A          266 KKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHHH-HSSCSCCSSC
T ss_pred             HHHHHHHHH-cCCCCCcccc
Confidence            999999999 7999998873

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.2e-37  Score=301.55  Aligned_cols=254  Identities=18%  Similarity=0.159  Sum_probs=190.0

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      ...|.+|.||||+|++.|+.+++++|++.+.+.   ..++.++..|.||||+|+..|+.++|++|++.+.  +.+..+..
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~   77 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA--GVLVAERG   77 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSSCCCTT
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCC
Confidence            457899999999999999999999999988653   2256788999999999999999999999999874  45667889


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhh------------cCCCCCChHHHHHHhCCCHHHHH-HHHHcCCCccccccc
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLM------------TFDSSNTTALHTASSQGHVEVVK-FLLEKGSTLATIARS  163 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~------------~~d~~g~tpLh~A~~~g~~~iv~-~Ll~~~~~~~~~~~~  163 (537)
                      |.||||+|+..|+.+++++|++.++....            .....+.++++.++..+...... .+...+.++ ...+.
T Consensus        78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (282)
T 1oy3_D           78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENY  156 (282)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCCT
T ss_pred             CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcCC
Confidence            99999999999999999999998765321            11234567777777665544333 333334444 56788


Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh
Q 009331          164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (537)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~  243 (537)
                      .|.||||+|+..|+.+++++|+++++++....+..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTS
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHc
Confidence            999999999999999999999999999876644569999999999999999999999 4778999999999999999999


Q ss_pred             CcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC
Q 009331          244 GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTG  278 (537)
Q Consensus       244 ~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~  278 (537)
                      |+.+++++|++ .|++++.+|..|.||+++|....
T Consensus       236 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          236 PNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             SCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred             CCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            99999999998 79999999999999999998654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-36  Score=288.89  Aligned_cols=227  Identities=27%  Similarity=0.297  Sum_probs=159.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331           60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (537)
Q Consensus        60 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (537)
                      ..+++|||.|+..|+.+.++.|++.+. ...+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~   81 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAA   81 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHHH
Confidence            345566666666666666666666542 22344556666666666666666666666666655443 3666677777777


Q ss_pred             hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHH
Q 009331          140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (537)
Q Consensus       140 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  219 (537)
                      ..|+.+++++|+++|.++ ...+..|.||||.|+..|+.+++++|++.+.++.. .|..|.||||.|+..|+.+++++|+
T Consensus        82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            777777777777776665 44566677777777777777777777777666433 3667777777777777777777777


Q ss_pred             hcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       220 ~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      + .+.+++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.||+++|...++.+++++|.++|++
T Consensus       160 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          160 F-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             H-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             h-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            7 455677778888888888888888888888887 5788888888888888888877778888888777654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-35  Score=299.77  Aligned_cols=259  Identities=22%  Similarity=0.269  Sum_probs=226.0

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      +..|..|.||||+|+..|+.+++++|++.+.+.      +..|..|.||||+|+..|+.+++++|++.+  .+.+..+..
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~~~~~  123 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV------HAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNAMDLW  123 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTT
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCC
Confidence            356788999999999999999999999998763      567899999999999999999999999987  445667889


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH---------------------HhCCCHHHHHHHHHcCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA---------------------SSQGHVEVVKFLLEKGS  155 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A---------------------~~~g~~~iv~~Ll~~~~  155 (537)
                      |.||||+|+..|+.+++++|++.+.+.... +..|.||+++|                     +..++.+.++.++..+.
T Consensus       124 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (351)
T 3utm_A          124 QFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI  202 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc
Confidence            999999999999999999999999886654 88899987765                     55667777777777654


Q ss_pred             CcccccccCCCcHHHHHHHC---CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCC
Q 009331          156 TLATIARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK  232 (537)
Q Consensus       156 ~~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~  232 (537)
                      .. ...+..|.||||.|+..   +..+++++|++.+.++.. .|..|.||||+|+.+|+.+++++|++ .+.++|.+|..
T Consensus       203 ~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~  279 (351)
T 3utm_A          203 IN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSL  279 (351)
T ss_dssp             TT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             cc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC
Confidence            43 44677899999999999   668999999999988654 48899999999999999999999999 57789999999


Q ss_pred             CCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       233 G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      |+||||+|+..|+.+++++|++ .|++++..|..|.||+++|    ..++.++|.+.+..
T Consensus       280 g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          280 GQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             CCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            9999999999999999999999 7999999999999999998    67888888887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.6e-36  Score=287.62  Aligned_cols=224  Identities=28%  Similarity=0.345  Sum_probs=187.8

Q ss_pred             HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHH
Q 009331           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL  135 (537)
Q Consensus        56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (537)
                      +..+..|.||||+|+..|+.+++++|++.+.  +.+..+..|.||||.|+..|+.+++++|++.+.++.. .+..|.|||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L   81 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGA--NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEGSTCL   81 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC-CCTTSCCHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCC--CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcHH
Confidence            4567788899999999999999999988763  4555677888999999999999999999988876554 377888999


Q ss_pred             HHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHH
Q 009331          136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV  215 (537)
Q Consensus       136 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  215 (537)
                      |+|+..|+.+++++|++.+.......+..|.||||.|+..|+.+++++|++.++++.. .|..|.||||.|+..|+.+++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999988444466788889999999999999999999998887643 478899999999999999999


Q ss_pred             HHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHH
Q 009331          216 DELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI  285 (537)
Q Consensus       216 ~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~  285 (537)
                      ++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.|||++|+..++.+.+..
T Consensus       161 ~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~  228 (237)
T 3b7b_A          161 EILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQ  228 (237)
T ss_dssp             HHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred             HHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence            99998 466788889999999999999999999999998 688999999999999999998887754433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.2e-36  Score=286.21  Aligned_cols=228  Identities=23%  Similarity=0.340  Sum_probs=207.1

Q ss_pred             hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR   95 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   95 (537)
                      .+.++.+|.||||+|+..|+.+++++|++.+.+.      +..+..|.||||+|+..|+.+++++|++.+.  +.+..+.
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~   75 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI------DTCSEDQRTPLMEAAENNHLEAVKYLIKAGA--LVDPKDA   75 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--CCCCCCT
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc------CccCCCCCCHHHHHHHhCCHHHHHHHHhCCC--CCCCCCC
Confidence            4578899999999999999999999999998763      5668899999999999999999999999874  4556788


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  175 (537)
                      .|.||||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..
T Consensus        76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  154 (237)
T 3b7b_A           76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFS  154 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHC
Confidence            99999999999999999999999996666667899999999999999999999999999987 66788999999999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      |+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+.+++...+..+++
T Consensus       155 ~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          155 GCVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             CCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988654 48899999999999999999999999 577789999999999999999999876666654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.6e-36  Score=282.96  Aligned_cols=221  Identities=23%  Similarity=0.259  Sum_probs=167.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhC--ChhhhcCCCCCChHHHHHH
Q 009331           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTAS  139 (537)
Q Consensus        62 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~  139 (537)
                      |+||||.|+..|+.++|+.|++.+.. .....+..|.||||+|+..|+.+++++|++.+  ++.....|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcc-ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            56777777777777777777776532 22335667777777777777777777777777  4444435677788888888


Q ss_pred             hCCCHHHHHHHHHcC--CCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHH
Q 009331          140 SQGHVEVVKFLLEKG--STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE  217 (537)
Q Consensus       140 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  217 (537)
                      ..|+.+++++|+++|  .++ ...+..|.||||.|+..|+.+++++|++++.++. ..|..|.||||+|+..|+.+++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHH
Confidence            888888888888877  554 4556778888888888888888888888877754 346788888888888888888888


Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       218 Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      |++.++.+++.+|..|+||||+|+..|+.+++++|++..|++++.+|..|.||+++|...   ++.++|++
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            888665778888889999999999999999999998447889999999999999988643   56666654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-36  Score=307.94  Aligned_cols=231  Identities=23%  Similarity=0.286  Sum_probs=207.9

Q ss_pred             HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHH
Q 009331           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL  135 (537)
Q Consensus        56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (537)
                      +..|..|.||||+||..|+.++|++|++.+  .+.+..+..|.||||+|+..|+.+++++|++.++...   +..|.|||
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L   88 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI   88 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence            445778999999999999999999999987  4567789999999999999999999999999998432   45899999


Q ss_pred             HHHHhCCCHHHHHHHHHc----CCCccc----------------ccccCCCcHHHHHHHCC--cHHHHHHHHhcCCCCcc
Q 009331          136 HTASSQGHVEVVKFLLEK----GSTLAT----------------IARSNGKTALHSAARNG--HLEIVKALLSKEPGIVL  193 (537)
Q Consensus       136 h~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~  193 (537)
                      |+|+..|+.+++++|++.    +.++..                ..+..|.||||+|+..|  +.+++++|++.+.++. 
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-
Confidence            999999999999999998    766532                16788999999999999  9999999999998865 


Q ss_pred             cCCCCCChHHHHHHhcCCHHHHHHHHhcCCc----ccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCC
Q 009331          194 RNDKKGQTALHMAVKGQSIELVDELVKVEPV----IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRET  269 (537)
Q Consensus       194 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~----~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t  269 (537)
                      ..|..|.||||+|+..|+.+++++|++.+..    .+|..|..|+||||+|+..|+.+++++|++ .|++++..|..|.|
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~t  246 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTV  246 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence            4488999999999999999999999995432    289999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHhcCCCC
Q 009331          270 ALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       270 ~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      ||++|+..|+.+++++|+++|++.
T Consensus       247 pL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          247 PLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHhChHHHHHHHHHcCCch
Confidence            999999999999999999998753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4e-36  Score=285.19  Aligned_cols=228  Identities=23%  Similarity=0.304  Sum_probs=206.7

Q ss_pred             cCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCC
Q 009331           19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY   98 (537)
Q Consensus        19 ~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   98 (537)
                      .+..+.+|||.|++.|+.+.++++++.++.     .++..+..|.||||+|+..|+.+++++|++.+  .+.+..+..|.
T Consensus         2 e~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~   74 (231)
T 3aji_A            2 EGCVSNIMICNLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGW   74 (231)
T ss_dssp             -CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSC
T ss_pred             CCccccchHHHHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCC
Confidence            356789999999999999999999998753     25677899999999999999999999999986  44566788999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      ||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+++|.++ ...+..|.||||.|+..|+.
T Consensus        75 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~  152 (231)
T 3aji_A           75 SPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNL  152 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             CHHHHHHHcCHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCH
Confidence            9999999999999999999999887644 889999999999999999999999999987 56788999999999999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331          179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV  258 (537)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~  258 (537)
                      +++++|++.+.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|.+ .|+
T Consensus       153 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~-~~a  229 (231)
T 3aji_A          153 KMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEG-EEA  229 (231)
T ss_dssp             HHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHhcCCCccc-cCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc-ccc
Confidence            999999999988654 48899999999999999999999999 577789999999999999999999999999987 443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.6e-36  Score=288.19  Aligned_cols=229  Identities=23%  Similarity=0.301  Sum_probs=199.6

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHh----hCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI   92 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   92 (537)
                      ..+|.+|.||||+||+.|+.+++++|++    .+.+      ++..|..|.||||+|+..|+.+++++|++.+.  +.+.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~   74 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA--SPMA   74 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCcccccCCCHHHHHHHcCCHHHHHHHHHcCC--Cccc
Confidence            4678999999999999999999999998    3333      45678899999999999999999999999874  4556


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHhCCh---hhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHH
Q 009331           93 KARNGYDAFHIAAKQGCLEVLKILMEALPE---LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL  169 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  169 (537)
                      .+..|.||||+|+..|+.+++++|++.++.   .....|..|.||||+|+..|+.+++++|++.|+++....+..|.|||
T Consensus        75 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L  154 (241)
T 1k1a_A           75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL  154 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH
Confidence            788999999999999999999999999873   23445889999999999999999999999999998544337899999


Q ss_pred             HHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHH
Q 009331          170 HSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV  249 (537)
Q Consensus       170 ~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv  249 (537)
                      |+|+..|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++
T Consensus       155 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          155 IHAVENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            999999999999999999988654 48899999999999999999999999 5777899999999999999999999999


Q ss_pred             HHHhhh
Q 009331          250 QKLLNI  255 (537)
Q Consensus       250 ~~Ll~~  255 (537)
                      +.|.+.
T Consensus       233 ~~l~~~  238 (241)
T 1k1a_A          233 RGKATR  238 (241)
T ss_dssp             TC----
T ss_pred             hhhccC
Confidence            999873

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=294.18  Aligned_cols=230  Identities=20%  Similarity=0.201  Sum_probs=204.7

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      ...+.+|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.++|++|++.+  .+.+..+..
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~  124 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTAD  124 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCTT
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCC
Confidence            34678899999999999999999999999876      4567899999999999999999999999986  456678899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      |.||||+|+..|+.+++++|++.+++...  +..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+..|
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~  201 (285)
T 3d9h_A          125 WHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQ  201 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999999987653  456999999999999999999999999987 667899999999999999


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN  256 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  256 (537)
                      +.+++++|++.++++.  .|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+  ++.+++++|++..
T Consensus       202 ~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~  276 (285)
T 3d9h_A          202 QRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVP--PESPLAQLFLERE  276 (285)
T ss_dssp             CHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred             cHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence            9999999999998876  37899999999999999999999999 57789999999999999999  4578999999976


Q ss_pred             CCCccc
Q 009331          257 GVDKAV  262 (537)
Q Consensus       257 g~~~~~  262 (537)
                      |+++..
T Consensus       277 ~a~l~~  282 (285)
T 3d9h_A          277 GASLPK  282 (285)
T ss_dssp             ------
T ss_pred             ccCCCC
Confidence            776543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.3e-36  Score=281.92  Aligned_cols=222  Identities=26%  Similarity=0.341  Sum_probs=197.4

Q ss_pred             CCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-cCCCCChHH
Q 009331           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI-KARNGYDAF  101 (537)
Q Consensus        23 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~L  101 (537)
                      |.||||.|++.|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++|++.+...+... .+..|.|||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L   76 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   76 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc-----cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence            789999999999999999999998643     34578999999999999999999999999986555555 788999999


Q ss_pred             HHHHHcCCHHHHHHHHHhC--ChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHH
Q 009331          102 HIAAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (537)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  179 (537)
                      |+|+..|+.+++++|++.+  +++. ..|..|.||||+|+..|+.+++++|+++|.++ ...|..|.||||+|+..|+.+
T Consensus        77 ~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           77 HIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHHHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999998  5544 44889999999999999999999999999987 677889999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      ++++|++.++......|..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+..   ++.++|++
T Consensus       155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            9999999995545666899999999999999999999999557888999999999999999765   45556655

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=280.47  Aligned_cols=231  Identities=24%  Similarity=0.289  Sum_probs=203.4

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHH
Q 009331           57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALH  136 (537)
Q Consensus        57 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  136 (537)
                      ..|..|.|||+.|+..|+.+++++|++.+  .+.+..+..|.||||.|+..|+.+++++|++.++......+..|.||||
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            45778899999999999999999999977  4456678889999999999999999999999999887776777999999


Q ss_pred             HHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCC-HHHH
Q 009331          137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-IELV  215 (537)
Q Consensus       137 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v  215 (537)
                      +|+..|+.+++++|++.|+++ ...+..|.||||.|+..|+.+++++|++++.+.. ..+..|.||||.|+..++ .+++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHH
Confidence            999999999999999999887 5678889999999999999999999999988765 447889999999996665 7888


Q ss_pred             HHHHhcCCcccccccC-CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          216 DELVKVEPVIINMVDA-KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       216 ~~Ll~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      ++|++ .+.+++..+. .|+||||+|+..|+.+++++|++ .|++++..|..|.||+++|+..++.+++++|+++|+..
T Consensus       160 ~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          160 RLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            88888 5666788886 89999999999999999999998 68999999999999999999999999999999988764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.3e-35  Score=294.77  Aligned_cols=232  Identities=23%  Similarity=0.336  Sum_probs=200.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccC-CCCChHHHHHHHcCCHHHHHHHHHhCChhh-------------
Q 009331           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-RNGYDAFHIAAKQGCLEVLKILMEALPELL-------------  124 (537)
Q Consensus        59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~-------------  124 (537)
                      +.+|+||||.|++.|+.++|++||+.|.+  ++.++ ..|.||||+|+..|+.+++++|++++++..             
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            34578999999999999999999999844  44454 459999999999999999999999876532             


Q ss_pred             -------------------hcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccc---------ccccCCCcHHHHHHHCC
Q 009331          125 -------------------MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT---------IARSNGKTALHSAARNG  176 (537)
Q Consensus       125 -------------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpL~~A~~~g  176 (537)
                                         ...|..|.||||+|+..|+.+++++|+++|+++..         ..+..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                               23478899999999999999999999999987632         23456899999999999


Q ss_pred             cHHHHHHHHhc-CCCCcccCCCCCChHHHHHHhcCC----HHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHH
Q 009331          177 HLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQS----IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK  251 (537)
Q Consensus       177 ~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~  251 (537)
                      +.+++++|+++ +.++ +..|..|.|++|.++..+.    .+++++|++ .+.++|.+|.+|+||||+|+..|+.++++.
T Consensus       180 ~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          180 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             CHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence            99999999975 5554 4558899999998775433    357788888 677899999999999999999999999999


Q ss_pred             HhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331          252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG  294 (537)
Q Consensus       252 Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~  294 (537)
                      |++..|++++.+|.+|.||||+|+..|+.+++++|+++|+++.
T Consensus       258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9997899999999999999999999999999999999999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.3e-35  Score=289.73  Aligned_cols=243  Identities=20%  Similarity=0.204  Sum_probs=212.3

Q ss_pred             HHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCC
Q 009331           30 LVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGC  109 (537)
Q Consensus        30 A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~  109 (537)
                      +++..+.+.+..++..+.       ++.+|..|.||||+|+..|+.++|++|++.+.+  .+..  +|.||||+|+..|+
T Consensus         6 ~i~~~~~~~v~~lL~~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~--~g~t~L~~A~~~g~   74 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSKD-------TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL--KNLL--ENEFPLHQAATLED   74 (285)
T ss_dssp             TGGGCCHHHHHHHHHSTT-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG--GSCC--TTCCHHHHHTTSSS
T ss_pred             HHHhcCHHHHHHHHHhCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCC--CCCCHHHHHHHcCC
Confidence            345666677777776552       467899999999999999999999999998743  3333  59999999999999


Q ss_pred             HHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCC-CcHHHHHHHCCcHHHHHHHHhcC
Q 009331          110 LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG-KTALHSAARNGHLEIVKALLSKE  188 (537)
Q Consensus       110 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~  188 (537)
                      .+++++|++.++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..| .||||+|+..|+.+++++|++++
T Consensus        75 ~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           75 TKIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             CHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            9999999999988765 4889999999999999999999999999997 5677788 89999999999999999999999


Q ss_pred             CCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcH-HHHHHHhCcHHHHHHHhhhcCCCcccccCCC
Q 009331          189 PGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA-LHIATRKGRVQIVQKLLNINGVDKAVINKSR  267 (537)
Q Consensus       189 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g  267 (537)
                      ++....  ..|.||||+|+..|+.+++++|++. +.+++.+|..|+|| ||+|+..++.+++++|++ .|++++..|.  
T Consensus       153 ~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~--  226 (285)
T 3kea_A          153 PSTFDL--AILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL--  226 (285)
T ss_dssp             CTTCCC--STHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG--
T ss_pred             Cccccc--cCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh--
Confidence            876322  3899999999999999999999994 77789999999998 999999999999999999 7999999884  


Q ss_pred             CCHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 009331          268 ETALDTAEKTGHSEIGVILKEHGVPCGKS  296 (537)
Q Consensus       268 ~t~L~~A~~~~~~~i~~~L~~~ga~~~~~  296 (537)
                           .|+..|+.+++++|+++|++....
T Consensus       227 -----~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          227 -----ENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             -----GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             -----hhhhcCCHHHHHHHHHcCCCCCCc
Confidence                 456789999999999999875433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=291.62  Aligned_cols=217  Identities=26%  Similarity=0.342  Sum_probs=145.4

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc------cccccCCCCChHHHHHHHcCCHH-HHHHHHHhCChhhhcCCCC
Q 009331           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTS------LAGIKARNGYDAFHIAAKQGCLE-VLKILMEALPELLMTFDSS  130 (537)
Q Consensus        58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~------~~~~~~~~g~t~Lh~Aa~~g~~~-iv~~Ll~~~~~~~~~~d~~  130 (537)
                      +|..+.+||+.||..|+.++|++|++.+...      ..+..+..|.||||.|+..++.+ ++++|++.+.+++. .|.+
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTC-CCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCCC
Confidence            3445566777777777777777777655322      12334566778888887766653 67777777776554 3778


Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      |+||||+|+..|+.+++++|++.++++ ...+.+|.||+|.|+..++.+++++|++.++++.. .|..|.||||+|+.+|
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~-~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYACSGG  163 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCC
Confidence            888888888888888888888888776 55677788888888888888888888888877543 4778888888888888


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCC
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGH  279 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~  279 (537)
                      +.+++++|++ .+.++|.+|..|+||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+++++
T Consensus       164 ~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          164 HHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCc
Confidence            8888888888 566788888888899999998888888888888 688888888888999988876654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-35  Score=298.74  Aligned_cols=232  Identities=23%  Similarity=0.291  Sum_probs=203.3

Q ss_pred             hccC-CCCCChHHHHHHcCCHHHHHHHH--------hhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCc
Q 009331           17 QLTA-KRDDTPLQSLVRTGSVELVLDMI--------SSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT   87 (537)
Q Consensus        17 ~~~~-~~~~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~   87 (537)
                      +..| ..|.||||+|+..|+.+++++|+        +.+.+      ++..|..|.||||+|+..|+.++|++|++.+. 
T Consensus       118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-  190 (373)
T 2fo1_E          118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-  190 (373)
T ss_dssp             TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred             cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC-
Confidence            3445 78999999999999998888877        55554      45678999999999999999999999999874 


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHHhCC--hhhhcCCCCCChHHHHHHhCC---CHHHHHHHHHcCCCccc---
Q 009331           88 SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP--ELLMTFDSSNTTALHTASSQG---HVEVVKFLLEKGSTLAT---  159 (537)
Q Consensus        88 ~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~---  159 (537)
                       +.+..+..|.||||+|+..|+.+++++|++.+.  ......|..|.||||+|+..+   +.+++++|+++|+++..   
T Consensus       191 -~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~  269 (373)
T 2fo1_E          191 -DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  269 (373)
T ss_dssp             -CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             -CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence             456688899999999999999999999999873  233445899999999999998   89999999999998743   


Q ss_pred             ----ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCc
Q 009331          160 ----IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNS  235 (537)
Q Consensus       160 ----~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T  235 (537)
                          ..|..|.||||+|+..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+|
T Consensus       270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t  348 (373)
T 2fo1_E          270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHT  348 (373)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCC
T ss_pred             cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCC
Confidence                2466899999999999999999999998744456678999999999999999999999999 57789999999999


Q ss_pred             HHHHHHHhCcHHHHHHHhhhcCC
Q 009331          236 ALHIATRKGRVQIVQKLLNINGV  258 (537)
Q Consensus       236 ~Lh~A~~~~~~~iv~~Ll~~~g~  258 (537)
                      |||+|+.+|+.+++++|++ .++
T Consensus       349 ~l~~A~~~g~~~iv~~Ll~-~~a  370 (373)
T 2fo1_E          349 ARQLAQANNHHNIVDIFDR-CRP  370 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHT-TC-
T ss_pred             HHHHHHHcCCHHHHHHHHh-cCc
Confidence            9999999999999999998 454

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.8e-35  Score=284.55  Aligned_cols=240  Identities=19%  Similarity=0.205  Sum_probs=188.4

Q ss_pred             HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChH
Q 009331           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA  134 (537)
Q Consensus        56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  134 (537)
                      +.+|..|.||||+|+..|+.++|++|++.+... ..+..+..|.||||+|+..|+.+++++|+++++++... |..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCH
Confidence            457899999999999999999999999987543 26678899999999999999999999999999887644 8899999


Q ss_pred             HHHHHhCCCHHHHHHHHHcCCCccc------------ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChH
Q 009331          135 LHTASSQGHVEVVKFLLEKGSTLAT------------IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA  202 (537)
Q Consensus       135 Lh~A~~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  202 (537)
                      ||+|+..|+.+++++|++++++...            .....+.++++.++..+.......++..........+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            9999999999999999998876421            1223456677777666554444333333222334568899999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcccccccC-CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChh
Q 009331          203 LHMAVKGQSIELVDELVKVEPVIINMVDA-KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE  281 (537)
Q Consensus       203 Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~  281 (537)
                      ||+|+..|+.+++++|++ .+..++..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+
T Consensus       162 L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcH
Confidence            999999999999999999 4566788875 49999999999999999999999 69999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCC
Q 009331          282 IGVILKEHGVPCGKSIK  298 (537)
Q Consensus       282 i~~~L~~~ga~~~~~~~  298 (537)
                      ++++|+++|+++.....
T Consensus       240 ~v~~Ll~~ga~~~~~~~  256 (282)
T 1oy3_D          240 LARLLRAHGAPEPEDGG  256 (282)
T ss_dssp             HHHHHHHTTCCCCCCC-
T ss_pred             HHHHHHHcCCCcCcCCC
Confidence            99999999999765443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-35  Score=291.27  Aligned_cols=248  Identities=24%  Similarity=0.286  Sum_probs=207.9

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChH
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA  100 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~  100 (537)
                      ..|.||||.||..|+.+++++|++.+.+      ++..|..|.||||+|+..|+.++|++|++.+  .+.+..+..|.||
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tp  109 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIP  109 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcH
Confidence            4567899999999999999999999876      3567889999999999999999999999987  4456678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHCCcHH
Q 009331          101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLE  179 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~  179 (537)
                      ||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++++.. +.++ ...+..+.++++        .
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~~--------~  179 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDI-EAARKEEERIML--------R  179 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHH--------H
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCc-hhhhhhhhhHHH--------H
Confidence            99999999999999999999886654 88999999999999999999998876 4333 222333333333        3


Q ss_pred             HHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC
Q 009331          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD  259 (537)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~  259 (537)
                      .+..++..+.......+..|.||||+|+..|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|++ .|++
T Consensus       180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad  257 (299)
T 1s70_B          180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCD  257 (299)
T ss_dssp             HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCC
T ss_pred             HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCC
Confidence            34556666666666678899999999999999999999998 567789999999999999999999999999999 7999


Q ss_pred             cccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          260 KAVINKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       260 ~~~~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      ++.+|..|.||+++|.......+.+++.+
T Consensus       258 ~~~~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          258 MEAVNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             TTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999976544444444433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=288.41  Aligned_cols=222  Identities=22%  Similarity=0.292  Sum_probs=169.4

Q ss_pred             ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchh--HHHHHHcccCCCCcHHHHHHHcCCHH-HHHHHHHhCCcccccccC
Q 009331           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDME--LREMLSKMNQSGETALYVAAEYGYVD-MVREMIRYHDTSLAGIKA   94 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~l~~~~~~g~t~L~~Aa~~g~~~-iv~~Ll~~~~~~~~~~~~   94 (537)
                      ..|.++.++|+.||+.|+.++|++|++.+.+..  ....++..+..|.||||.|+..++.+ +++.|++.|  .+++..|
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d   83 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTS   83 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC--CCTTCCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcC
Confidence            456677899999999999999999999886431  22335667888999999999988764 888999877  4567789


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      .+|.||||+|+..|+.+++++|++.+++.... +..|.||+|+|+..++.+++++|++.|+++ +..|.+|.||||+|+.
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACS  161 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999887654 889999999999999999999999999998 6679999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCc
Q 009331          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~  245 (537)
                      .|+.+++++|+++++++.. .+..|.||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|+++++
T Consensus       162 ~g~~~~v~~Ll~~gadvn~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          162 GGHHELVALLLQHGASINA-SNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TTCGGGHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCCHHHHHHHHHCCCCCCc-cccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999998654 58999999999999999999999999 577899999999999999998775

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=273.03  Aligned_cols=231  Identities=22%  Similarity=0.286  Sum_probs=204.8

Q ss_pred             ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCC
Q 009331           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (537)
                      ..|..+.|+||.|++.|+.+++++|++.+.+.      +..+..|.||||+|+..|+.+++++|++.+... ....+..|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~   76 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDV------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIV-DQLGGDLN   76 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTT
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCc------CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc-hhhcCCcC
Confidence            35778999999999999999999999998763      566889999999999999999999999987433 23345669


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCc
Q 009331           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (537)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  177 (537)
                      .||||.|+..|+.+++++|++.+.+.... |..|.||||+|+..|+.+++++|+++|+++ ...+.+|.||||.|+..++
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCC
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCC
Confidence            99999999999999999999998877654 889999999999999999999999999987 6678899999999996665


Q ss_pred             -HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331          178 -LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN  256 (537)
Q Consensus       178 -~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  256 (537)
                       .+++++|++.+.+.....+..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|++ .
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-~  232 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQE-A  232 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-H
T ss_pred             hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-h
Confidence             89999999999998766445899999999999999999999995 67789999999999999999999999999998 4


Q ss_pred             CCC
Q 009331          257 GVD  259 (537)
Q Consensus       257 g~~  259 (537)
                      +.+
T Consensus       233 ~~~  235 (240)
T 3eu9_A          233 RQA  235 (240)
T ss_dssp             C--
T ss_pred             hhc
Confidence            444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.2e-34  Score=270.48  Aligned_cols=217  Identities=22%  Similarity=0.273  Sum_probs=157.8

Q ss_pred             CCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHH
Q 009331           73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE  152 (537)
Q Consensus        73 g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  152 (537)
                      |+.+++++|++.+.+. ....+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCc-ccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4556666666655322 222356677777777777777777777777665543 36677777777777777777777777


Q ss_pred             cCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCC
Q 009331          153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK  232 (537)
Q Consensus       153 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~  232 (537)
                      .++......+..|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++. +.+++.+|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC
Confidence            76644455667777777777777777777777777766543 367778888888888888888888874 5667888888


Q ss_pred             CCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331          233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG  294 (537)
Q Consensus       233 G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~  294 (537)
                      |+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..++.+++++|+++|+...
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            8888888888888888888888 688888888888888888888888888888888887643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9.8e-34  Score=267.17  Aligned_cols=215  Identities=21%  Similarity=0.246  Sum_probs=191.4

Q ss_pred             CCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHH
Q 009331           34 GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVL  113 (537)
Q Consensus        34 g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv  113 (537)
                      |+.+++++|++.+.+.     ....|..|.||||+|+..|+.+++++|++.+  .+.+..+..|.||||+|+..|+.+++
T Consensus         2 g~~~~i~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETTCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcCCCc-----ccccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            6788889999988753     2345789999999999999999999999987  44566788999999999999999999


Q ss_pred             HHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcc
Q 009331          114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVL  193 (537)
Q Consensus       114 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~  193 (537)
                      ++|++.++......+..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+..|+.+++++|++++.+...
T Consensus        75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999988666667899999999999999999999999999987 56788999999999999999999999999988654


Q ss_pred             cCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC
Q 009331          194 RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD  259 (537)
Q Consensus       194 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~  259 (537)
                       .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|+.
T Consensus       154 -~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~  216 (223)
T 2f8y_A          154 -QNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLV  216 (223)
T ss_dssp             -CCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCS
T ss_pred             -cCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHH-cCCC
Confidence             48899999999999999999999999 566789999999999999999999999999998 5654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.8e-33  Score=274.74  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=197.6

Q ss_pred             hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR   95 (537)
Q Consensus        16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   95 (537)
                      ....|.+|.||||+|+..|+.+++++|++.+.+.+      .  .+|.||||+|+..|+.++|++|++.+.  +.+..+.
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~d~   93 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN------L--LENEFPLHQAATLEDTKIVKILLFSGL--DDSQFDD   93 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS------C--CTTCCHHHHHTTSSSCHHHHHHHHTTC--CTTCCCT
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------C--CCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCC
Confidence            45678899999999999999999999999986542      2  259999999999999999999999874  4566888


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCC-ChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN-TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      .|.||||+|+..|+.+++++|++.++++... |..| .||||+|+..|+.+++++|+++|++...  ...|.||||+|+.
T Consensus        94 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~  170 (285)
T 3kea_A           94 KGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIK  170 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHH
Confidence            9999999999999999999999999887655 7788 8999999999999999999999987622  2278999999999


Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCCChH-HHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331          175 NGHLEIVKALLSKEPGIVLRNDKKGQTA-LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL  253 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  253 (537)
                      .|+.+++++|+++++++.. .|..|.|| ||+|+.+|+.+++++|++ .+.+++..|       +.|+..|+.+++++|+
T Consensus       171 ~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~-------~~a~~~~~~~iv~~Ll  241 (285)
T 3kea_A          171 NGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSAN-------LENVLLDDAEIAKMII  241 (285)
T ss_dssp             TTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTT-------GGGGTTTCHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------hhhhhcCCHHHHHHHH
Confidence            9999999999999888654 57889997 999999999999999999 577778777       3567899999999999


Q ss_pred             hhcCCCccccc
Q 009331          254 NINGVDKAVIN  264 (537)
Q Consensus       254 ~~~g~~~~~~~  264 (537)
                      + .|++++..+
T Consensus       242 ~-~g~~~~~~~  251 (285)
T 3kea_A          242 E-KHVEYKSDS  251 (285)
T ss_dssp             H-HHHHHTTCT
T ss_pred             H-cCCCCCCcc
Confidence            9 677665443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.4e-32  Score=251.53  Aligned_cols=193  Identities=24%  Similarity=0.299  Sum_probs=136.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  175 (537)
                      .+.||||.|+..|+.+.++.|++.++......|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            45666666666666666666666665344444666777777777777777777777776665 44566677777777777


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCc-----HHHHH
Q 009331          176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR-----VQIVQ  250 (537)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~-----~~iv~  250 (537)
                      |+.+++++|++.+.......|..|.||||.|+..|+.+++++|++.++.+++.+|..|+||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            7777777777554444445566777777777777777777777776556677777777777777777776     77777


Q ss_pred             HHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       251 ~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      +|++ .|++++.+|..|.|||++|+..|+.+++++|+++|
T Consensus       163 ~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            7777 57777777777777777777777777777777765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5e-34  Score=271.88  Aligned_cols=215  Identities=26%  Similarity=0.276  Sum_probs=138.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc--cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHH
Q 009331           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTS--LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL  135 (537)
Q Consensus        58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (537)
                      +|.+|.||||+|+..|+.++++.|++.+...  +.+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHH
Confidence            4566777777777777777777776654321  3455666677777777777777777777776665543 366777777


Q ss_pred             HHHHhCCCHHHHHHHHHcCCCc-----ccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          136 HTASSQGHVEVVKFLLEKGSTL-----ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       136 h~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      |+|+..|+.+++++|++.+.+.     ....+..|.||||+|+..|+.+++++|+++++++....+..|.||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            7777777777777777776532     23445566777777777777777777777766654442226777777777777


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcc--cccCCCCCHHHHHH
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKA--VINKSRETALDTAE  275 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~--~~~~~g~t~L~~A~  275 (537)
                      +.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|++..  ..+..|.||.+.+.
T Consensus       163 ~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          163 NPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             CHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC-
T ss_pred             CHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhhc
Confidence            7777777776 355567777777777777777777777777776 566554  56666666665543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-33  Score=277.20  Aligned_cols=256  Identities=19%  Similarity=0.226  Sum_probs=208.0

Q ss_pred             HHHHcCCHHHHHHHHhhCCchhH---HHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHH
Q 009331           29 SLVRTGSVELVLDMISSYGDMEL---REMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAA  105 (537)
Q Consensus        29 ~A~~~g~~~~v~~Ll~~~~~~~~---~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  105 (537)
                      .+++.|+.+.++.++......+.   .......+..|.||||.||..|+.++|++|++.+.  +.+..+..|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC--CTTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHH
Confidence            46777888888888877643211   00012234567899999999999999999999874  45667889999999999


Q ss_pred             HcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHH
Q 009331          106 KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL  185 (537)
Q Consensus       106 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  185 (537)
                      ..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|+++|+++ ...+.+|.||||+|+..|+.++++.++
T Consensus        82 ~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           82 IDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            999999999999999887644 889999999999999999999999999987 567889999999999999999999988


Q ss_pred             hcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccC
Q 009331          186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINK  265 (537)
Q Consensus       186 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~  265 (537)
                      ..........+..+.++++        ..+..++..........+..|.||||+|+..|+.+++++|++ .|++++..|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~  230 (299)
T 1s70_B          160 NRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDY  230 (299)
T ss_dssp             HHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCT
T ss_pred             hhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCC
Confidence            7644322222222233332        234455555666666778899999999999999999999998 7999999999


Q ss_pred             CCCCHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 009331          266 SRETALDTAEKTGHSEIGVILKEHGVPCGKSI  297 (537)
Q Consensus       266 ~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~  297 (537)
                      .|.||||+|+..|+.+++++|+++|+++....
T Consensus       231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d  262 (299)
T 1s70_B          231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVN  262 (299)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999999999999876543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-31  Score=254.85  Aligned_cols=208  Identities=25%  Similarity=0.256  Sum_probs=144.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhh----hcCCCCCChHHH
Q 009331           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL----MTFDSSNTTALH  136 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~----~~~d~~g~tpLh  136 (537)
                      .|+||||.|+..|+.++|+.|++.. ..+.+..+..|.||||+|+..|+.+++++|++.+++..    ...|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            4778888888888888888888762 24456677888888888888888888888888887653    234567888888


Q ss_pred             HHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHH
Q 009331          137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD  216 (537)
Q Consensus       137 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  216 (537)
                      +|+..|+.+++++|+++|+++.. .+..  +.+..                   .....|..|.||||+|+..|+.++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~-~~~~--~~~~~-------------------~~~~~~~~g~t~L~~A~~~~~~~~v~  138 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSA-RATG--SVFHY-------------------RPHNLIYYGEHPLSFAACVGSEEIVR  138 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CCCS--GGGSC-------------------CTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCc-ccCC--cceee-------------------cccccccCCCCHHHHHHHcCCHHHHH
Confidence            88888888888888888877632 2221  11100                   01223456777777777777777777


Q ss_pred             HHHhcCCcccccccCCCCcHHHHHHHhCcHHHH----HHHhhhcCCCc------ccccCCCCCHHHHHHHcCChhHHHHH
Q 009331          217 ELVKVEPVIINMVDAKGNSALHIATRKGRVQIV----QKLLNINGVDK------AVINKSRETALDTAEKTGHSEIGVIL  286 (537)
Q Consensus       217 ~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv----~~Ll~~~g~~~------~~~~~~g~t~L~~A~~~~~~~i~~~L  286 (537)
                      +|++ .+.+++.+|.+|+||||+|+..++.+++    ++|++ .|+++      +.+|..|.|||++|+..|+.+++++|
T Consensus       139 ~Ll~-~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~L  216 (232)
T 2rfa_A          139 LLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL  216 (232)
T ss_dssp             HHHH-TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHH-CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7776 3555677777777777777777776666    66666 45555      46677777777777777777777777


Q ss_pred             HhcCCCC
Q 009331          287 KEHGVPC  293 (537)
Q Consensus       287 ~~~ga~~  293 (537)
                      +++|...
T Consensus       217 l~~g~~~  223 (232)
T 2rfa_A          217 MQKRKHI  223 (232)
T ss_dssp             HHHHHHC
T ss_pred             HhcCccc
Confidence            7776554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=1.1e-31  Score=254.76  Aligned_cols=175  Identities=23%  Similarity=0.221  Sum_probs=141.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHh-CChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcc----cccccCCCcHHH
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA----TIARSNGKTALH  170 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~  170 (537)
                      .|.||||.|+..|+.+++++|++. +.++ ...|..|+||||+|+..|+.+++++|++.++++.    ...|.+|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            478888888888888888888887 4444 4458888888888888888888888888887653    234567888888


Q ss_pred             HHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHH
Q 009331          171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ  250 (537)
Q Consensus       171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~  250 (537)
                      +|+..|+.+++++|++++++.... +..  +.+                   ....+..|.+|+||||+|+..|+.++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~  138 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSAR-ATG--SVF-------------------HYRPHNLIYYGEHPLSFAACVGSEEIVR  138 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCC-CCS--GGG-------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcc-cCC--cce-------------------eecccccccCCCCHHHHHHHcCCHHHHH
Confidence            888888888888888887775432 111  111                   1124567789999999999999999999


Q ss_pred             HHhhhcCCCcccccCCCCCHHHHHHHcCChhHH----HHHHhcCCCCC
Q 009331          251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIG----VILKEHGVPCG  294 (537)
Q Consensus       251 ~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~----~~L~~~ga~~~  294 (537)
                      +|++ .|++++.+|..|.||||+|+..++.+++    ++|+++|++..
T Consensus       139 ~Ll~-~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          139 LLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             HHHH-TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHH-CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            9999 6999999999999999999999999888    99999999763

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=6.8e-33  Score=264.03  Aligned_cols=202  Identities=21%  Similarity=0.218  Sum_probs=178.8

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHhCCh---hhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcH
Q 009331           92 IKARNGYDAFHIAAKQGCLEVLKILMEALPE---LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA  168 (537)
Q Consensus        92 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  168 (537)
                      ..|.+|.||||+|+..|+.+++++|++.++.   .....|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence            3578899999999999999999999998764   34556889999999999999999999999999987 6678899999


Q ss_pred             HHHHHHCCcHHHHHHHHhcCCCC-----cccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccC-CCCcHHHHHHH
Q 009331          169 LHSAARNGHLEIVKALLSKEPGI-----VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA-KGNSALHIATR  242 (537)
Q Consensus       169 L~~A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~-~G~T~Lh~A~~  242 (537)
                      ||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++|++ .+.+++.+|. .|+||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999998642     45567889999999999999999999999 4667889997 99999999999


Q ss_pred             hCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 009331          243 KGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS  296 (537)
Q Consensus       243 ~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~  296 (537)
                      .|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|++....
T Consensus       161 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~  213 (236)
T 1ikn_D          161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM  213 (236)
T ss_dssp             TTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSS
T ss_pred             cCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhc
Confidence            999999999999 69999999999999999999999999999999999976533

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=8.1e-33  Score=277.00  Aligned_cols=243  Identities=18%  Similarity=0.157  Sum_probs=185.7

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHc-----------ccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSK-----------MNQSGETALYVAAEYGYVDMVREMIRYH   85 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~-----------~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~   85 (537)
                      ...+..|.++++     |+.++++.|++++.+++...+...           ......+.+|+|+..+..++++.|++.+
T Consensus        46 ~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g  120 (327)
T 1sw6_A           46 MKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ  120 (327)
T ss_dssp             EECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSC
T ss_pred             ccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcC
Confidence            345677888887     999999999999865443222111           1111233468888888889999998876


Q ss_pred             Ccccccc-cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC---HHHHHHHHHcCCCccccc
Q 009331           86 DTSLAGI-KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH---VEVVKFLLEKGSTLATIA  161 (537)
Q Consensus        86 ~~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~  161 (537)
                        .+++. .+..|.||||+|+..|+.+++++|+++++++.. .|..|+||||+|+..|+   .++++.|++.+.......
T Consensus       121 --~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~-~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~  197 (327)
T 1sw6_A          121 --LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  197 (327)
T ss_dssp             --CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             --CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence              45566 789999999999999999999999999988764 48999999999999998   688888888864334778


Q ss_pred             ccCCCcHHHHHHH----CCcHHHHHHHHhc--------------------CCCCcccCCCCCChHHHHHHhcCCHHHHHH
Q 009331          162 RSNGKTALHSAAR----NGHLEIVKALLSK--------------------EPGIVLRNDKKGQTALHMAVKGQSIELVDE  217 (537)
Q Consensus       162 ~~~g~tpL~~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  217 (537)
                      |..|.||||+|+.    .|+.+++++|++.                    +.++. ..+..|.||||.|+.      +++
T Consensus       198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~g~t~L~~a~~------~~~  270 (327)
T 1sw6_A          198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN-DKNGERKDSILENLD------LKW  270 (327)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHH
T ss_pred             CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc-cccccCCChhHHHHH------HHH
Confidence            9999999999999    9999999999987                    44443 457899999999996      888


Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC
Q 009331          218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTG  278 (537)
Q Consensus       218 Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~  278 (537)
                      |++.   .+|.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|
T Consensus       271 Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          271 IIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence            8886   489999999999999999999999999998 79999999999999999998654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=9.6e-31  Score=242.44  Aligned_cols=192  Identities=23%  Similarity=0.276  Sum_probs=148.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331           60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (537)
Q Consensus        60 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (537)
                      ..+.||||.|+..|+.+.++.|+..+. .+.+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~   80 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAG   80 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH
Confidence            456778888888888888888887642 24555677788888888888888888888888776554 3777888888888


Q ss_pred             hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCC-----HHH
Q 009331          140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-----IEL  214 (537)
Q Consensus       140 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~  214 (537)
                      ..|+.+++++|++.+.......+..|.||||.|+..|+.+++++|++.++......|..|.||||+|+..++     .++
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            888888888888554433366677788888888888888888888888744455567788888888888777     888


Q ss_pred             HHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       215 v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++
T Consensus       161 v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          161 VKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            888888 466678888888888888888888888888887

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.4e-31  Score=260.90  Aligned_cols=214  Identities=16%  Similarity=0.200  Sum_probs=142.4

Q ss_pred             HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc--ccc----ccCCCCChHHHHHHHc---CCHHHHHHHHHhCChhh--
Q 009331           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTS--LAG----IKARNGYDAFHIAAKQ---GCLEVLKILMEALPELL--  124 (537)
Q Consensus        56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~--~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~--  124 (537)
                      +..|..|.||||.|++.|+.++|+.|++.+...  ...    ..+..|.||||+|+..   |+.+++++|++.+++..  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            446788888999999999888888888753111  111    2467888888888876   88888888888865421  


Q ss_pred             ----h----cCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCC
Q 009331          125 ----M----TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND  196 (537)
Q Consensus       125 ----~----~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d  196 (537)
                          +    ..|..|.||||+|+..|+.+++++|+++|+++ ...+..+.                  ..  .......+
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~------------------~~--~~~~~~~~  145 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDF------------------FK--KTKGRPGF  145 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGG------------------GS--SCSSSCCC
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccccccc------------------cc--cccccccc
Confidence                1    13457777888888777888888887777776 33333210                  00  00011223


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhc--CCcccccccCCCCcHHHHHHHhCc---------HHHHHHHhhhcCCCcc----
Q 009331          197 KKGQTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGR---------VQIVQKLLNINGVDKA----  261 (537)
Q Consensus       197 ~~g~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~n~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~~g~~~~----  261 (537)
                      ..|.||||+|+..|+.+++++|++.  .+.+++.+|.+|+||||+|+..++         .+++++|++ .|++++    
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~  224 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLK  224 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccc
Confidence            4677777777777777777777774  455667777777777777777766         677777776 566665    


Q ss_pred             ---cccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331          262 ---VINKSRETALDTAEKTGHSEIGVILKEHGV  291 (537)
Q Consensus       262 ---~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga  291 (537)
                         .+|..|.|||++|+..|+.+++++|+++|+
T Consensus       225 ~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          225 LEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence               467777777777777777777777777777

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.3e-31  Score=255.57  Aligned_cols=207  Identities=18%  Similarity=0.178  Sum_probs=144.1

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHhCCcccccc----cCCCCChHHHHHHHc---CCHHHHHHHHHhCChhhhc---
Q 009331           61 SGETALYVAAEYGYVD----MVREMIRYHDTSLAGI----KARNGYDAFHIAAKQ---GCLEVLKILMEALPELLMT---  126 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~----iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~---  126 (537)
                      .|+||||.|+..|+.+    ++++|++.+.  +.+.    .+..|.||||+|+..   |+.+++++|++.+++....   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK--YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCC--CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            3677777777777776    4455555542  3333    566777777777777   7777777777776654321   


Q ss_pred             -------CCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCC
Q 009331          127 -------FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG  199 (537)
Q Consensus       127 -------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  199 (537)
                             .|..|.||||+|+..|+.+++++|+++|+++ ...+..+.++                    .+ ....|..|
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~--------------------~~-~~~~~~~g  136 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQ--------------------KH-QGTCFYFG  136 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGS--------------------CC-SSSCCCSC
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccccc--------------------cc-ccccccCC
Confidence                   1345666666666666666666666666665 2233322110                    00 11123348


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhc--CCcccccccCCCCcHHHHHHH--hCcHH-------HHHHHhhhcCCCc-------c
Q 009331          200 QTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATR--KGRVQ-------IVQKLLNINGVDK-------A  261 (537)
Q Consensus       200 ~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~n~~d~~G~T~Lh~A~~--~~~~~-------iv~~Ll~~~g~~~-------~  261 (537)
                      .||||+|+..|+.+++++|++.  .+.++|.+|.+|+||||+|+.  .++.+       ++++|++ .|+++       +
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  215 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEE  215 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGG
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCccccccccc
Confidence            8888888888888888888885  566788888888999999888  67777       8888888 68888       8


Q ss_pred             cccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          262 VINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       262 ~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      .+|..|.||||+|+..|+.+++++|+++|.+
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          216 ISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            8888999999999999999999999888754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.1e-31  Score=258.36  Aligned_cols=183  Identities=17%  Similarity=0.127  Sum_probs=125.0

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHhCC----hhh---hcCCCCCChHHHHHHhC---CCHHHHHHHHHcCCCccc-
Q 009331           91 GIKARNGYDAFHIAAKQGCLEVLKILMEALP----ELL---MTFDSSNTTALHTASSQ---GHVEVVKFLLEKGSTLAT-  159 (537)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~----~~~---~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~-  159 (537)
                      ...+..|.||||.|+..|+.++++.|++.+.    .+.   ...|..|.||||+|+..   |+.+++++|++.|++... 
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            3457778888888888888888888887432    221   13467888888888876   888888888888754311 


Q ss_pred             ---------ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 009331          160 ---------IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD  230 (537)
Q Consensus       160 ---------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d  230 (537)
                               ..|..|.||||+|+..|+.+++++|+++++++... +..+.                  .  .....+..|
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~------------------~--~~~~~~~~~  145 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDF------------------F--KKTKGRPGF  145 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGG------------------G--SSCSSSCCC
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccc------------------c--ccccccccc
Confidence                     02234445555555555555555554444443222 11110                  0  011123334


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHhhh--cCCCcccccCCCCCHHHHHHHcCC---------hhHHHHHHhcCCCCC
Q 009331          231 AKGNSALHIATRKGRVQIVQKLLNI--NGVDKAVINKSRETALDTAEKTGH---------SEIGVILKEHGVPCG  294 (537)
Q Consensus       231 ~~G~T~Lh~A~~~~~~~iv~~Ll~~--~g~~~~~~~~~g~t~L~~A~~~~~---------~~i~~~L~~~ga~~~  294 (537)
                      ..|+||||+|+..|+.+++++|++.  .|++++.+|..|.||||+|+..++         .+++++|+++|++..
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            4899999999999999999999985  699999999999999999999988         789999999998875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.6e-30  Score=249.29  Aligned_cols=204  Identities=22%  Similarity=0.309  Sum_probs=136.7

Q ss_pred             CCCChHHHHHHcCCHHHHHHHHh----hCCchhHHHHHHc----ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccc
Q 009331           22 RDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSK----MNQSGETALYVAAEY---GYVDMVREMIRYHDTSLA   90 (537)
Q Consensus        22 ~~~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~----~~~~g~t~L~~Aa~~---g~~~iv~~Ll~~~~~~~~   90 (537)
                      .|.||||.|++.|+.+.++.+++    .+      ..++.    .|..|.||||+|+..   |+.++|++|++.+.....
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g------~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~   74 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS------KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN   74 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcC------CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence            37899999999999986655544    43      23455    788999999999999   999999999998744321


Q ss_pred             ---------cccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccccc
Q 009331           91 ---------GIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA  161 (537)
Q Consensus        91 ---------~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (537)
                               ...|..|.||||+|+..|+.+++++|++.++++... |..+.++                    .+. ...
T Consensus        75 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~--------------------~~~-~~~  132 (256)
T 2etb_A           75 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQ--------------------KHQ-GTC  132 (256)
T ss_dssp             SSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGS--------------------CCS-SSC
T ss_pred             hhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-ccccccc--------------------ccc-ccc
Confidence                     113467999999999999999999999999887654 4431110                    000 112


Q ss_pred             ccCCCcHHHHHHHCCcHHHHHHHHh---cCCCCcccCCCCCChHHHHHHh--cCCHH-------HHHHHHhcCCccc---
Q 009331          162 RSNGKTALHSAARNGHLEIVKALLS---KEPGIVLRNDKKGQTALHMAVK--GQSIE-------LVDELVKVEPVII---  226 (537)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~---  226 (537)
                      +..|.||||+|+..|+.+++++|++   .+.++. ..|..|+||||+|+.  +++.+       ++++|++. +.++   
T Consensus       133 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~  210 (256)
T 2etb_A          133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPT  210 (256)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccc
Confidence            2234444444444444444444444   343332 224455555555554  44444       66666663 3334   


Q ss_pred             ----ccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331          227 ----NMVDAKGNSALHIATRKGRVQIVQKLLNI  255 (537)
Q Consensus       227 ----n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  255 (537)
                          +.+|..|+||||+|+..|+.+++++|+++
T Consensus       211 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence                77888888888888888888888888873

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.8e-29  Score=227.23  Aligned_cols=157  Identities=33%  Similarity=0.500  Sum_probs=115.2

Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      ++|+.||..|+.++|++|+++|+++ +..|.+|.||||+|+..++.++++.|++.+.++.. .|..|+||||+|+.+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~-~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh-hccCCCCHHHHHHHcCCH
Confidence            3577777777777777777777776 45677777777777777777777777777776543 367777777777777777


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      +++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|++ .|++++.+|.+|.|||++|+..|+.+++++|+++||+
T Consensus        84 ~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           84 EVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            77777777 455677777788888888888888888888877 6778888888888888888888888888888888776


Q ss_pred             C
Q 009331          293 C  293 (537)
Q Consensus       293 ~  293 (537)
                      .
T Consensus       162 i  162 (169)
T 4gpm_A          162 L  162 (169)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=4.9e-31  Score=264.05  Aligned_cols=252  Identities=17%  Similarity=0.105  Sum_probs=192.6

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc--------
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--------   92 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~--------   92 (537)
                      ....+|+|    ....+++++|++++.+      ++..+..|.|+++     |+.++|+.|++.+.......        
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~ga~------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~   85 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSSPLK------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND   85 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTSSCC------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------
T ss_pred             cccccchh----hhcCchHHHHhhCCcc------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcc
Confidence            44556666    3556789999999976      4667889999988     99999999999873321100        


Q ss_pred             -------cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCC
Q 009331           93 -------KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG  165 (537)
Q Consensus        93 -------~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g  165 (537)
                             ......+.+|.|+..+..+++++|++.+.++....|..|+||||+|+..|+.++|++|+++|+++ ...|.+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g  164 (327)
T 1sw6_A           86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMG  164 (327)
T ss_dssp             ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTC
T ss_pred             cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence                   11112234588888888899999999988877646999999999999999999999999999998 6789999


Q ss_pred             CcHHHHHHHCCc---HHHHHHHHhcCCCCcccCCCCCChHHHHHHh----cCCHHHHHHHHhcC----------------
Q 009331          166 KTALHSAARNGH---LEIVKALLSKEPGIVLRNDKKGQTALHMAVK----GQSIELVDELVKVE----------------  222 (537)
Q Consensus       166 ~tpL~~A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~~----------------  222 (537)
                      .||||+|+..|+   .++++.|++.+.......|..|+||||+|+.    .|+.+++++|++..                
T Consensus       165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~  244 (327)
T 1sw6_A          165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  244 (327)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence            999999999998   6777788777644456678999999999999    99999999999853                


Q ss_pred             ---CcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 009331          223 ---PVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI  297 (537)
Q Consensus       223 ---~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~  297 (537)
                         +.+++.+|..|+||||.|+.      +++|++.   +++.+|..|.||||+|+..|+.+++++|+++|+++....
T Consensus       245 ~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d  313 (327)
T 1sw6_A          245 NEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN  313 (327)
T ss_dssp             ---------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             hcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence               67889999999999999986      8899885   689999999999999999999999999999999876543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=5.8e-29  Score=223.90  Aligned_cols=159  Identities=35%  Similarity=0.477  Sum_probs=114.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      ++|+.||..|+.++|+.|++.+++++. .|..|+||||+|+..++.+++++|++.|+++ ...|.+|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~-~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            357777777777777777777766543 3677777777777777777777777777776 45677777777777777777


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331          179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV  258 (537)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~  258 (537)
                      +++++|+++++++.. .|..|+||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|+
T Consensus        84 ~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA  160 (169)
T 4gpm_A           84 EVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGG  160 (169)
T ss_dssp             HHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C--
T ss_pred             HHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence            777777777776543 46777888888888888888888887 456677888888888888888888888888887 677


Q ss_pred             Cccc
Q 009331          259 DKAV  262 (537)
Q Consensus       259 ~~~~  262 (537)
                      +++.
T Consensus       161 ~ie~  164 (169)
T 4gpm_A          161 WLEH  164 (169)
T ss_dssp             ----
T ss_pred             CcCC
Confidence            7653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2.2e-30  Score=250.33  Aligned_cols=213  Identities=18%  Similarity=0.157  Sum_probs=135.4

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHH----hCCcccccc--cCCCCChHHHHHH---HcCCHHHHHHHHHhCChhh-----
Q 009331           59 NQSGETALYVAAEYGYVDMVREMIR----YHDTSLAGI--KARNGYDAFHIAA---KQGCLEVLKILMEALPELL-----  124 (537)
Q Consensus        59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~----~~~~~~~~~--~~~~g~t~Lh~Aa---~~g~~~iv~~Ll~~~~~~~-----  124 (537)
                      +..|.|+||.|++.|+.+.|+.|++    .+.......  .+..|.||||+|+   ..|+.+++++|++.+.+..     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4567777777777777775444444    543322111  2255777777777   5577777777777654321     


Q ss_pred             -----hcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCC
Q 009331          125 -----MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG  199 (537)
Q Consensus       125 -----~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  199 (537)
                           ...|..|.||||+|+..|+.+++++|+++|+++. ..+..+..                    .+......+..|
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~--------------------~~~~~~~~~~~g  140 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFF--------------------QPKDEGGYFYFG  140 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCC--------------------SSSCCCCSCCSC
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-cccccccc--------------------CcccccccccCC
Confidence                 1112355555555555555555555555555542 22211000                    000001112567


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhc--CCcccccccCCCCcHHHHHHHhCc---------HHHHHHHhhhcCCCc-------c
Q 009331          200 QTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGR---------VQIVQKLLNINGVDK-------A  261 (537)
Q Consensus       200 ~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~n~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~~g~~~-------~  261 (537)
                      .||||+|+..|+.+++++|++.  .+.+++.+|.+|+||||+|+..++         .+++++|++ .|+++       +
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~  219 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEA  219 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGG
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhh
Confidence            8888888888888888888874  466678888888888888887776         688888887 57777       6


Q ss_pred             cccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          262 VINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       262 ~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      ..|..|.||||+|+..|+.+++++|+++|+..
T Consensus       220 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          220 LLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            78888888888888888888888888887653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=245.65  Aligned_cols=189  Identities=26%  Similarity=0.323  Sum_probs=104.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCh-hhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH----
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPE-LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA----  173 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~----  173 (537)
                      +++|.|+..|+.+.++.+++...+ ..+..|..|.||||+|+..|+.+++++|++.|+......+..|.||||.|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            445555555555555555544333 123335555555555555555555555555555222445555555555555    


Q ss_pred             -HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331          174 -RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL  252 (537)
Q Consensus       174 -~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  252 (537)
                       ..++.++++.|++.+... ...+..|+||||+|+.+|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             335555555555555433 2234555666666666666666666665 3444555666666666666666666666666


Q ss_pred             hhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331          253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  289 (537)
Q Consensus       253 l~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~  289 (537)
                      ++..|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus       236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            6545566666666666666666666666666666554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.2e-29  Score=242.11  Aligned_cols=204  Identities=22%  Similarity=0.258  Sum_probs=141.0

Q ss_pred             CCCCCChHHHHHHcCCHHHHHHHHh----hCCchhHHHHHHcccCCCCcHHHHHH---HcCCHHHHHHHHHhCCc-----
Q 009331           20 AKRDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSKMNQSGETALYVAA---EYGYVDMVREMIRYHDT-----   87 (537)
Q Consensus        20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~~~~~g~t~L~~Aa---~~g~~~iv~~Ll~~~~~-----   87 (537)
                      +..+.++||.||+.|+.+.++.|++    .+.+.+...  ...+..|.||||+|+   ..|+.++|++|++.+..     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE--FREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG--GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh--hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            5678999999999999999999999    565532211  122377999999999   77999999999998633     


Q ss_pred             ----ccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCC--------------CCCChHHHHHHhCCCHHHHHH
Q 009331           88 ----SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFD--------------SSNTTALHTASSQGHVEVVKF  149 (537)
Q Consensus        88 ----~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~  149 (537)
                          ......|..|.||||+|+..|+.+++++|++.++++... +              ..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                223334558999999999999999999999999887654 4              345566666666666666666


Q ss_pred             HHH---cCCCcccccccCCCcHHHHHHHCCc--HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 009331          150 LLE---KGSTLATIARSNGKTALHSAARNGH--LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV  224 (537)
Q Consensus       150 Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~--~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  224 (537)
                      |++   .|+++ +..|.+|.||||+|+..|+  .+..+.                           ..+++++|++. +.
T Consensus       159 Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~---------------------------~~~~v~~Ll~~-ga  209 (260)
T 3jxi_A          159 LTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKF---------------------------VTKMYDLLLIK-CA  209 (260)
T ss_dssp             HHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHH---------------------------HHHHHHHHHHH-HH
T ss_pred             HHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHH---------------------------HHHHHHHHHHh-Cc
Confidence            666   55554 3445555555555554443  000000                           03455555552 22


Q ss_pred             cc-------ccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331          225 II-------NMVDAKGNSALHIATRKGRVQIVQKLLNI  255 (537)
Q Consensus       225 ~~-------n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  255 (537)
                      ++       +.+|.+|+||||+|+..|+.+++++|+++
T Consensus       210 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            23       66778888888888888888888888873

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=239.26  Aligned_cols=197  Identities=23%  Similarity=0.271  Sum_probs=178.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331           60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (537)
Q Consensus        60 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (537)
                      ..+.+++|.|+..|+.+.++.+++.+.+...+..|.+|.||||+|+..|+.+++++|++.++......|..|.||||+|+
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            34578999999999999999998876555577889999999999999999999999999998555667999999999999


Q ss_pred             -----hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHH
Q 009331          140 -----SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL  214 (537)
Q Consensus       140 -----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  214 (537)
                           ..++.+++++|++.|... ...+..|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHCCCHHH
Confidence                 668899999999999776 56788899999999999999999999999998654 48999999999999999999


Q ss_pred             HHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331          215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV  258 (537)
Q Consensus       215 v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~  258 (537)
                      +++|++..+.+++.+|.+|+||||+|+..|+.+++++|+++.++
T Consensus       232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            99999977888999999999999999999999999999996553

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=7.5e-28  Score=217.35  Aligned_cols=170  Identities=27%  Similarity=0.289  Sum_probs=121.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      +.+|||.|+..|+.++++.|++.++......|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            3467777777777777777777777656666777777777777777777777777777776 455677777777777777


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN  256 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  256 (537)
                      +.+++++|++++.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .
T Consensus        81 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~  157 (172)
T 3v30_A           81 YTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIEN-H  157 (172)
T ss_dssp             CHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred             CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHH-H
Confidence            7777777777777654 336777788888888888888888877 456677777888888888888888888888877 5


Q ss_pred             CCCcccccCCCCCH
Q 009331          257 GVDKAVINKSRETA  270 (537)
Q Consensus       257 g~~~~~~~~~g~t~  270 (537)
                      +++....+..|.||
T Consensus       158 ~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHSCC-------
T ss_pred             HHHHhcccCCCCCC
Confidence            66777666666665

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.6e-27  Score=219.27  Aligned_cols=161  Identities=30%  Similarity=0.299  Sum_probs=105.1

Q ss_pred             cCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHH
Q 009331          126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM  205 (537)
Q Consensus       126 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  205 (537)
                      ..|..|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+..|+.+++++|++.++++. ..|..|.||||+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~  107 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMW  107 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHH
Confidence            34556666666666666666666666666554 3445556666666666666666666666665543 235666666666


Q ss_pred             HHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHH
Q 009331          206 AVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI  285 (537)
Q Consensus       206 A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~  285 (537)
                      |+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..|+.+++++
T Consensus       108 A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            666666666666666 345566667777777777777777777777776 466777777777777777777777777777


Q ss_pred             HHhcC
Q 009331          286 LKEHG  290 (537)
Q Consensus       286 L~~~g  290 (537)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            66643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=4e-30  Score=260.67  Aligned_cols=156  Identities=23%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             CCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCccc-ccccCCCCChH
Q 009331           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSL-AGIKARNGYDA  100 (537)
Q Consensus        22 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~  100 (537)
                      ++.||||+|++.|+.++|++|++.+.+...   ....+..|.||||+||..|+.++|++|++.+.+.. .+..+.+ .||
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSS---CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHH---HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            334555555555555555555555431100   00112234455555555555555555555542210 1111111 555


Q ss_pred             HHHHHHcCCHHHHHHHHHhCChhhh-cCCCCCChHHHHHH-hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331          101 FHIAAKQGCLEVLKILMEALPELLM-TFDSSNTTALHTAS-SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~-~~d~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      ||+|+..|+.+++++|++++++... ..|..|.||||+|+ ..|+.++|++|++.|+        .|.||||.|+..|+.
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence            5555555555555555555554332 12444555555555 5555555555555432        145555555555555


Q ss_pred             HHHHHHHhcCC
Q 009331          179 EIVKALLSKEP  189 (537)
Q Consensus       179 ~iv~~Ll~~~~  189 (537)
                      +++++|++.+.
T Consensus       239 evv~lL~~~ga  249 (376)
T 2aja_A          239 YVNPFIARHVN  249 (376)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHhcCc
Confidence            55555555443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.2e-26  Score=208.94  Aligned_cols=158  Identities=33%  Similarity=0.473  Sum_probs=102.3

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh
Q 009331          129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK  208 (537)
Q Consensus       129 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  208 (537)
                      ..+.+||+.|+..|+.+++++|+++|.++ +..|.+|.||||.|+..|+.+++++|++++.+.. ..|..|.||||.|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence            34456666666666666666666666555 3445566666666666666666666666655543 235566666666666


Q ss_pred             cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       209 ~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      .|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .|++++.+|..|.||+++|+..++.+++++|++
T Consensus        90 ~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           90 FGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            666666666666 345566667777777777777777777777776 567777777777777777777777777777766


Q ss_pred             cC
Q 009331          289 HG  290 (537)
Q Consensus       289 ~g  290 (537)
                      .|
T Consensus       168 ~G  169 (169)
T 2y1l_E          168 LN  169 (169)
T ss_dssp             C-
T ss_pred             cC
Confidence            54

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=6.1e-27  Score=210.28  Aligned_cols=158  Identities=24%  Similarity=0.324  Sum_probs=100.7

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      |.||||.|+..|+.+++++|++.+.++ ...|..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||.|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcC
Confidence            456666666666666666666665554 34455566666666666666666666666555432 3556666666666666


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      +.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|++ .|++++..|..|.||+++|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           81 YTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            66666666663 44566666777777777777777777777776 56677777777777777777777777777776655


Q ss_pred             CC
Q 009331          291 VP  292 (537)
Q Consensus       291 a~  292 (537)
                      ++
T Consensus       159 ~~  160 (167)
T 3v31_A          159 LK  160 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.4e-26  Score=213.00  Aligned_cols=157  Identities=24%  Similarity=0.239  Sum_probs=77.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Q 009331           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA  173 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  173 (537)
                      |..|.||||.|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhcccccc-ccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence            33444444444444444444444444333222 2444444444444444444444444444443 333444455555555


Q ss_pred             HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331          174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL  253 (537)
Q Consensus       174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  253 (537)
                      ..|+.+++++|++.++++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            5555555555555444432 224555555555555555555555555 24445555555666666666666666666555


Q ss_pred             h
Q 009331          254 N  254 (537)
Q Consensus       254 ~  254 (537)
                      +
T Consensus       188 ~  188 (192)
T 2rfm_A          188 E  188 (192)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=8e-27  Score=210.56  Aligned_cols=161  Identities=27%  Similarity=0.343  Sum_probs=149.4

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      +.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCC
Confidence            468999999999999999999999886678899999999999999999999999999988654 4789999999999999


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      +.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|
T Consensus        81 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            9999999999 567789999999999999999999999999999 79999999999999999999999999999999998


Q ss_pred             CCCC
Q 009331          291 VPCG  294 (537)
Q Consensus       291 a~~~  294 (537)
                      ++..
T Consensus       159 ~~~~  162 (172)
T 3v30_A          159 LKLF  162 (172)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            7643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=8.1e-27  Score=208.20  Aligned_cols=154  Identities=25%  Similarity=0.414  Sum_probs=69.9

Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      ||||.|+..|+.+++++|+++|.++ ...+..|.||||.|+. |+.+++++|++.+.++.. .|..|.||||.|+..|+.
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCH
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCH
Confidence            4444444444444444444444433 2333444444444444 444444444444433322 234444444444444444


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC-cccccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331          213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD-KAVINKSRETALDTAEKTGHSEIGVILKEHGV  291 (537)
Q Consensus       213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga  291 (537)
                      +++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++ ++..|..|.|||++|+..++.+++++|+++|+
T Consensus        84 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           84 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            44444444 233344444455555555555555555555554 2333 34444555555555555555555555555544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.4e-26  Score=206.70  Aligned_cols=159  Identities=27%  Similarity=0.384  Sum_probs=144.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  175 (537)
                      ...||||.|+..|+.+++++|++.+.++.. .|..|.||||+|+. |+.+++++|+++|+++ ...+..|.||||.|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccc-cCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            467999999999999999999999887754 48899999999999 9999999999999987 56788999999999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331          176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI  255 (537)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  255 (537)
                      |+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..|+.+++++|++ 
T Consensus        81 ~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-  158 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA-  158 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             CCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence            999999999999988654 588999999999999999999999997777789999999999999999999999999998 


Q ss_pred             cCCC
Q 009331          256 NGVD  259 (537)
Q Consensus       256 ~g~~  259 (537)
                      .|+|
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            5654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=4.1e-26  Score=204.84  Aligned_cols=154  Identities=25%  Similarity=0.297  Sum_probs=84.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      |.||||.|+..|+.+++++|++.+..+. ..|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||.|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence            4455555555555555555555544332 22445555555555555555555555555544 334455555555555555


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             CHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            5555555555555433 224555666666666666666666665 344455666666666666666666666666665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.1e-26  Score=208.05  Aligned_cols=160  Identities=29%  Similarity=0.369  Sum_probs=107.9

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (537)
                      |..|.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++. ..|..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHHH
Confidence            44455666666666666666666654443334445556666666666666666666666665543 33566777777777


Q ss_pred             hcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331          208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK  287 (537)
Q Consensus       208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~  287 (537)
                      ..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|.. ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            7777777777776 455567777788888888888888888888887 578888888888888888666 7778888888


Q ss_pred             hcCC
Q 009331          288 EHGV  291 (537)
Q Consensus       288 ~~ga  291 (537)
                      ++|+
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            7765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=7e-26  Score=203.93  Aligned_cols=154  Identities=32%  Similarity=0.428  Sum_probs=86.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      +.++||.|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|+++|+++ ...|..|.||||.|+..|
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence            34555555555555555555555544332 2455555555555555555555555555554 334555555555555555


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +.+++++|++++++.. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        92 ~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            5555555555555533 234556666666666666666666665 344456666666666666666666666666665

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2.8e-26  Score=208.53  Aligned_cols=162  Identities=23%  Similarity=0.324  Sum_probs=91.4

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      +.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcC
Confidence            444555555555555555555553333344445555555555555555555555555544332 2455555555555555


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      +.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .|++++..|..|.||+++|...++.+++++|+++|
T Consensus        84 ~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           84 HRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            5555555555 344456666666666666666666666666666 46666666666666666666666666666666666


Q ss_pred             CCCCC
Q 009331          291 VPCGK  295 (537)
Q Consensus       291 a~~~~  295 (537)
                      ++...
T Consensus       162 ~~~~~  166 (179)
T 3f6q_A          162 QNLNR  166 (179)
T ss_dssp             CCCSC
T ss_pred             cCccc
Confidence            66543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.5e-28  Score=249.18  Aligned_cols=223  Identities=22%  Similarity=0.223  Sum_probs=164.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhh--hcCCCCCChH
Q 009331           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL--MTFDSSNTTA  134 (537)
Q Consensus        58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tp  134 (537)
                      .+.++.||||+|++.|+.++|++|++.+.+. .....+..|.||||+|+..|+.+++++|++.+++..  ...+.+ .||
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            3455679999999999999999999987532 112345568899999999999999999999996411  111122 899


Q ss_pred             HHHHHhCCCHHHHHHHHHcCCCccc-ccccCCCcHHHHHH-HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          135 LHTASSQGHVEVVKFLLEKGSTLAT-IARSNGKTALHSAA-RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       135 Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      ||+|+..|+.+++++|+++|+++.. ..|.+|.||||+|+ ..|+.+++++|++.+.        .|.||||.|+.+|+.
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence            9999999999999999999998643 26788999999999 9999999999998652        378999999999999


Q ss_pred             HHHHHHHhcCCcccccccC-------CCCc-------------HHHHHHHh---CcHHHHHHHhhhcCCCc----ccccC
Q 009331          213 ELVDELVKVEPVIINMVDA-------KGNS-------------ALHIATRK---GRVQIVQKLLNINGVDK----AVINK  265 (537)
Q Consensus       213 ~~v~~Ll~~~~~~~n~~d~-------~G~T-------------~Lh~A~~~---~~~~iv~~Ll~~~g~~~----~~~~~  265 (537)
                      +++++|++. +..++..|.       +|..             .+......   +..+.+++|++..+++.    ....+
T Consensus       239 evv~lL~~~-ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n  317 (376)
T 2aja_A          239 YVNPFIARH-VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG  317 (376)
T ss_dssp             THHHHHHHH-HHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTT
T ss_pred             HHHHHHHhc-CcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCC
Confidence            999999984 333333332       2211             11111122   23556667766332221    12234


Q ss_pred             CCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          266 SRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       266 ~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      .+.|||++|+..|+.+++++|++.|
T Consensus       318 ~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          318 DANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             CCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             CccHHHHHHHHcCcHHHHHHHHcCh
Confidence            5678999999999999999999865

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=3.8e-26  Score=207.69  Aligned_cols=169  Identities=21%  Similarity=0.299  Sum_probs=153.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      .++.++||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            467899999999999999999999987767777999999999999999999999999999987 5678899999999999


Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      .|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988654 48999999999999999999999999 567789999999999999999999999999998


Q ss_pred             hcCCCcccccCCC
Q 009331          255 INGVDKAVINKSR  267 (537)
Q Consensus       255 ~~g~~~~~~~~~g  267 (537)
                       .|++++..+..+
T Consensus       160 -~g~~~~~~~~~~  171 (179)
T 3f6q_A          160 -MGQNLNRIPYKD  171 (179)
T ss_dssp             -TTCCCSCBCCCC
T ss_pred             -hhcCcccCCccc
Confidence             799998876654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=7.2e-26  Score=200.24  Aligned_cols=149  Identities=28%  Similarity=0.382  Sum_probs=88.0

Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      ||||.|+..|+.+++++|++.|.+..  .+..|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcChH
Confidence            45555555555555555555555432  34455555555555555555555555555433 2345566666666666666


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHH
Q 009331          213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL  286 (537)
Q Consensus       213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L  286 (537)
                      +++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..|+.+++++|
T Consensus        81 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            66666665 344456666666666666666666666666666 4666666666666666666666666666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.5e-29  Score=239.73  Aligned_cols=201  Identities=20%  Similarity=0.158  Sum_probs=132.0

Q ss_pred             HHHHHhCCccc-ccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCc
Q 009331           79 REMIRYHDTSL-AGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL  157 (537)
Q Consensus        79 ~~Ll~~~~~~~-~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  157 (537)
                      +.|++.+.... .+..+.+|.||||.|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++.|+++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            44555543322 223445566677777777777777777777665543 3667777777777777777777777777766


Q ss_pred             ccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHH--HhcCCHHHHHHHHhcCCcccccccCCCCc
Q 009331          158 ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDELVKVEPVIINMVDAKGNS  235 (537)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T  235 (537)
                       +..|..|.||||+|+..|+.+++++|++.++++....+..|.||||+|  +..|+.+++++|++ .+.+++.+|..|.|
T Consensus        81 -n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~  158 (229)
T 2vge_A           81 -NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMNSGAVY  158 (229)
T ss_dssp             -TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGEEE
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCcccccCCchH
Confidence             455667777777777777777777777777776555445777777777  77777777777777 34556777777777


Q ss_pred             HHHHHHHhCcHHHHHHHhhhcCCC--cccccCCCCCHHHHHHHcCChhHHHHH
Q 009331          236 ALHIATRKGRVQIVQKLLNINGVD--KAVINKSRETALDTAEKTGHSEIGVIL  286 (537)
Q Consensus       236 ~Lh~A~~~~~~~iv~~Ll~~~g~~--~~~~~~~g~t~L~~A~~~~~~~i~~~L  286 (537)
                      |+|.++..+..   ++|++ .|++  ++.+|..|.|||++|+..|+.++++.+
T Consensus       159 ~l~~~~~~~~~---~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          159 ALWDYSAEFGD---ELSFR-EGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             ESSCBCCSSTT---BCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHHHHhhcccc---ccCcc-ccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            77755544332   35555 4666  566777788888888888877776543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1e-28  Score=234.11  Aligned_cols=204  Identities=18%  Similarity=0.152  Sum_probs=166.0

Q ss_pred             HHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHH
Q 009331           39 VLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME  118 (537)
Q Consensus        39 v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~  118 (537)
                      ++.|++++.+++.   .+..+..|.||||.|+..|+.++|++|++.+.  +.+..|..|.||||+|+..|+.+++++|++
T Consensus         1 v~~ll~~~~~~~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            1 MRSVLRKAGSPRK---ARRARLNPLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             ---------CCCC---CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CeehhccCCCCcc---ccccccchhHHHHHHHHcCCHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4677888776532   24556677899999999999999999999874  556789999999999999999999999999


Q ss_pred             hCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHH--HHCCcHHHHHHHHhcCCCCcccCC
Q 009331          119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA--ARNGHLEIVKALLSKEPGIVLRND  196 (537)
Q Consensus       119 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~~~~~~~~d  196 (537)
                      .+.++... |..|.||||+|+..|+.+++++|++.|+++....+.+|.||||+|  +..|+.+++++|++.+++.... |
T Consensus        76 ~ga~~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~  153 (229)
T 2vge_A           76 AGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-N  153 (229)
T ss_dssp             TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-G
T ss_pred             CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-c
Confidence            99887654 889999999999999999999999999998554457999999999  9999999999999999886544 7


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhcCCcc--cccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331          197 KKGQTALHMAVKGQSIELVDELVKVEPVI--INMVDAKGNSALHIATRKGRVQIVQKLL  253 (537)
Q Consensus       197 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  253 (537)
                      ..|.++++.++..+..   +.|++. +..  ++.+|.+|+||||+|+..|+.++++.++
T Consensus       154 ~~~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          154 SGAVYALWDYSAEFGD---ELSFRE-GESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             GGEEEESSCBCCSSTT---BCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             CCchHHHHHHhhcccc---ccCccc-cccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            8889999976665543   455653 444  7889999999999999999999987654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=9e-26  Score=199.62  Aligned_cols=149  Identities=28%  Similarity=0.337  Sum_probs=87.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      ++||.|+..|+.+++++|++.+++..  .|..|.||||+|+..|+.+++++|++.|.++ ...+..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChH
Confidence            45555555555555555555554432  2455555555555555555666655555554 34455556666666666666


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331          179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL  252 (537)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  252 (537)
                      +++++|+++++++.. .|..|.||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            666666665555432 35556666666666666666666666 3445566666666666666666666666654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.1e-25  Score=199.49  Aligned_cols=151  Identities=24%  Similarity=0.351  Sum_probs=82.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      ||||.|+..|+.+++++|++..+......|..|.||||+ +..|+.+++++|+++|+++ ...|..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence            455555555555555555555222223335555555555 5555555555555555554 33455555555555555555


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +++++|++++.++.. .|..|.||||+|+..|+.+++++|++.  .+++.+|.+|+||||+|+..|+.+++++|++
T Consensus        82 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           82 DTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            555555555544332 245555666666666666666665553  4455556666666666666666666666554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=3.4e-26  Score=204.95  Aligned_cols=157  Identities=24%  Similarity=0.307  Sum_probs=96.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Q 009331           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA  173 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  173 (537)
                      +.+|.|+||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|.++ ...|.+|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            3445566666666666666666665544444444555666666666666666666666666655 445556666666666


Q ss_pred             HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331          174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL  253 (537)
Q Consensus       174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  253 (537)
                      ..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+. ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            66666666666666655433 35666666666666666666666666 345566667777777777555 6667777666


Q ss_pred             h
Q 009331          254 N  254 (537)
Q Consensus       254 ~  254 (537)
                      +
T Consensus       161 ~  161 (165)
T 3twr_A          161 G  161 (165)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=3.4e-25  Score=196.41  Aligned_cols=154  Identities=25%  Similarity=0.302  Sum_probs=141.3

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      +.||||.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|++.+.++. ..|..|.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence            46899999999999999999999332336778899999999 99999999999999998865 45889999999999999


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  289 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~  289 (537)
                      +.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++.  ++++..|..|.|||++|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999 5677899999999999999999999999999994  89999999999999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=9.4e-26  Score=215.17  Aligned_cols=179  Identities=20%  Similarity=0.218  Sum_probs=78.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHh
Q 009331           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (537)
                      .|.||||.|++.|+.+.++.|++.+.+...   +..|.||||.|+..|+.+++++|++.++++.. .|..|.||||+|+.
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHH
Confidence            355555555555555555555555432221   23455555555555555555555555554332 25555555555555


Q ss_pred             CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHH--HhcCCHHHHHHH
Q 009331          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDEL  218 (537)
Q Consensus       141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~L  218 (537)
                      .|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|+++++++....+..+.||||+|  +..|+.+++++|
T Consensus        80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            55555555555555554 344555555555555555555555555555554433222223555555  455555555555


Q ss_pred             HhcCCcccc---------cccCCCCcHHHHHHHhCc
Q 009331          219 VKVEPVIIN---------MVDAKGNSALHIATRKGR  245 (537)
Q Consensus       219 l~~~~~~~n---------~~d~~G~T~Lh~A~~~~~  245 (537)
                      ++. +..++         ..|..+.++++++...|.
T Consensus       159 l~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          159 YGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            552 22122         235567777777766665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=1.1e-25  Score=214.73  Aligned_cols=179  Identities=18%  Similarity=0.191  Sum_probs=117.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (537)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (537)
                      ..|.||||.|+..|+.++++.|++++.++..  +..|.||||.|+..|+.+++++|++.|+++ +..|.+|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            4588999999999999999999988877653  467889999999999999999999888876 5678888999999999


Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC-cHHHHH--HHhCcHHHHHH
Q 009331          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN-SALHIA--TRKGRVQIVQK  251 (537)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~-T~Lh~A--~~~~~~~iv~~  251 (537)
                      .|+.+++++|++++.++. ..|..|+||||+|+..|+.+++++|++ .+.+++.+|..|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            999999999998888764 447888999999999999999999998 4666788887776 999988  77788899998


Q ss_pred             HhhhcCCCcccc---------cCCCCCHHHHHHHcCC
Q 009331          252 LLNINGVDKAVI---------NKSRETALDTAEKTGH  279 (537)
Q Consensus       252 Ll~~~g~~~~~~---------~~~g~t~L~~A~~~~~  279 (537)
                      |++ .|++++..         +..+.++++++...|.
T Consensus       158 Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          158 LYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            887 56676655         4456677776665554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=2.3e-23  Score=184.76  Aligned_cols=142  Identities=21%  Similarity=0.237  Sum_probs=102.6

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCCh-HHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT-ALHMA  206 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh~A  206 (537)
                      +..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+ .|+.+++++|++.+.++.. .|..|.| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHH
Confidence            567788888888888888888888888776 556778888888874 7888888888888777543 4778888 99999


Q ss_pred             HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHH
Q 009331          207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA  274 (537)
Q Consensus       207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A  274 (537)
                      +..|+.+++++|++. +.+++.+|.+|+||||+|+..|+.+++++|++ .|++++..|..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            998999999988884 66788889999999999999999999999998 7899999999998887643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=1e-23  Score=192.66  Aligned_cols=40  Identities=13%  Similarity=0.176  Sum_probs=16.0

Q ss_pred             HHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331          248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK  287 (537)
Q Consensus       248 iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~  287 (537)
                      ++++|++..|++++.+|..|.||||+|...++.+++++|.
T Consensus       135 iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~  174 (186)
T 3t8k_A          135 LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME  174 (186)
T ss_dssp             HHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3333333233444444444444444444444444443333

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=3.3e-23  Score=189.34  Aligned_cols=155  Identities=19%  Similarity=0.168  Sum_probs=136.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCH----HHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV----EVVKFLLEKGSTLATIARSNGKTALHSA  172 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  172 (537)
                      ++++|+.|++.|+.+.++.+++.+.....  +..|+||||+|+..|+.    +++++|+++|+++ +..|.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~--~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE--SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHH--HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccccc--ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            56899999999999999999998765332  36799999999999975    5999999999998 67789999999999


Q ss_pred             HHCCc------HHHHHHHHhcCCCCcccCCCCCC-hHHHHHHhcC-----CHHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331          173 ARNGH------LEIVKALLSKEPGIVLRNDKKGQ-TALHMAVKGQ-----SIELVDELVKVEPVIINMVDAKGNSALHIA  240 (537)
Q Consensus       173 ~~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~-----~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A  240 (537)
                      +..|+      .+++++|+++|.++.. .|..|. ||||+|+..+     ..+++++|++..+.+++.+|..|+||||+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~-~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSS-CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCc-cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            99886      6889999999999765 488999 9999999954     356999999866788999999999999999


Q ss_pred             HHhCcHHHHHHHhhh
Q 009331          241 TRKGRVQIVQKLLNI  255 (537)
Q Consensus       241 ~~~~~~~iv~~Ll~~  255 (537)
                      +..++.+++++|.+.
T Consensus       162 ~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          162 KRCQKPIALKMMEDY  176 (186)
T ss_dssp             HTTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            999999999999873

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=7.2e-23  Score=177.12  Aligned_cols=128  Identities=21%  Similarity=0.265  Sum_probs=77.9

Q ss_pred             ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCC-CCcHHH
Q 009331          160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK-GNSALH  238 (537)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~-G~T~Lh  238 (537)
                      ..+..|.||||.|+..|+.+++++|++.+.++. ..|..|+||||+|+. |+.+++++|++ .+.+++.+|.. |+||||
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCHHH
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCHHH
Confidence            344555555555555555555555555555433 234556666666666 66666666665 34445666666 666666


Q ss_pred             HHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331          239 IATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV  291 (537)
Q Consensus       239 ~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga  291 (537)
                      +|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|+
T Consensus        84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6666666666666666 566666666666666666666666666666666665

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=1.3e-22  Score=175.58  Aligned_cols=126  Identities=21%  Similarity=0.273  Sum_probs=79.3

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCC-CChHHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK-GQTALHMA  206 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-g~t~Lh~A  206 (537)
                      |..|.||||+|+..|+.+++++|+++|.++ ...|..|.||||+|+. |+.+++++|+++++++... |.. |.||||+|
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A   85 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATLTRPVHDA   85 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTTBCHHHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCCCCHHHHH
Confidence            555666666666666666666666665554 3445556666666666 6666666666665554332 445 66666666


Q ss_pred             HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331          207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV  258 (537)
Q Consensus       207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~  258 (537)
                      +..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|+
T Consensus        86 ~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Ga  135 (136)
T 1d9s_A           86 AREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA-ATG  135 (136)
T ss_dssp             HHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHC
T ss_pred             HHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCC
Confidence            66666677776666 345566777777777777777777777777776 344

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=1.2e-22  Score=180.16  Aligned_cols=140  Identities=20%  Similarity=0.192  Sum_probs=77.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCc-HHHHH
Q 009331           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT-ALHSA  172 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~A  172 (537)
                      +..|.||||.|+..|+.+++++|++.+.++... |..|.||||+|+ .|+.+++++|+++|+++ ...|..|.| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            445566666666666666666666665554332 556666666653 66666666666666655 445566666 66666


Q ss_pred             HHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHH
Q 009331          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH  238 (537)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh  238 (537)
                      +..|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||.+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSS-CC---------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccc
Confidence            666666666666666665433 35666677777776667777766666 45556666666666655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.1e-21  Score=166.64  Aligned_cols=125  Identities=39%  Similarity=0.615  Sum_probs=78.4

Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      |.||||.|+..|+.+++++|++.+++... .|..|.||||.|+..++.+++++|++ .+..++.+|..|+||||+|+..+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcC
Confidence            55555555555555555555555554332 34556666666666666666666666 34445666666666666666666


Q ss_pred             cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       245 ~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      +.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            6666666666 4666666666666777777666666677766666653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=2.2e-21  Score=164.61  Aligned_cols=125  Identities=42%  Similarity=0.644  Sum_probs=81.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHh
Q 009331           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (537)
                      +|.||||.|+..|+.+++++|++.+.  +.+..+..|.||||.|+..|+.+++++|++.+.++... |..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC--CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHH
Confidence            36677777777777777777776652  33445666667777777777777777777666654433 5666677777777


Q ss_pred             CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCC
Q 009331          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP  189 (537)
Q Consensus       141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  189 (537)
                      .|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++++
T Consensus        78 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            77777777777766665 4456666677777776677777776666654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=8.8e-22  Score=170.24  Aligned_cols=123  Identities=30%  Similarity=0.417  Sum_probs=73.5

Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      +.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..+
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcC
Confidence            4555555555555555555555555433 234556666666666666666666665 34445666666666666666666


Q ss_pred             cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       245 ~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      +.+++++|++ .|++++..|..|.|||++|+..++.+++++|+++|
T Consensus        92 ~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            6666666666 46666666666666666666666666666666554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=1.3e-21  Score=169.21  Aligned_cols=126  Identities=25%  Similarity=0.352  Sum_probs=90.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      ...+.||||.|+..|+.+++++|++.+  .+.+..|..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHH
Confidence            345677788888888888888777765  334556677777777777777777777777777665433 66777777777


Q ss_pred             HhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcC
Q 009331          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE  188 (537)
Q Consensus       139 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  188 (537)
                      +..|+.+++++|+++|+++ ...|.+|.||||+|+..|+.+++++|++.|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7777777777777777776 456677777777777777777777777653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=9.5e-22  Score=170.19  Aligned_cols=128  Identities=24%  Similarity=0.370  Sum_probs=84.7

Q ss_pred             ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHH
Q 009331          160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI  239 (537)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~  239 (537)
                      ..|.+|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHH
Confidence            345566666666666666666666666665543 335666777777777777777777776 455567777777777777


Q ss_pred             HHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          240 ATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       240 A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      |+..++.+++++|++ .|++++.+|..|.||+++|...+..+++++|.+.+
T Consensus        83 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            777777777777776 57777777777777777777666666666655543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=2.1e-21  Score=176.90  Aligned_cols=140  Identities=21%  Similarity=0.188  Sum_probs=100.6

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      +..|.||||.|+..|+.++++.|++ +  .+.+..+..|.||||+|+..|+.+++++|++.++++....+..|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            4567788888888888888888887 4  345566777888888888888888888888877776655336777888888


Q ss_pred             HhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHH
Q 009331          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (537)
Q Consensus       139 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  218 (537)
                      +..|+.+++++|+++|+++ ...|.+|.||||+|+..++.                  ..+.++|+.|+..|..+++++|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence            8888888888888877776 45677777777777753221                  3345677777777766766666


Q ss_pred             Hh
Q 009331          219 VK  220 (537)
Q Consensus       219 l~  220 (537)
                      .+
T Consensus       179 ~~  180 (183)
T 3deo_A          179 EG  180 (183)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=2.6e-21  Score=176.39  Aligned_cols=140  Identities=26%  Similarity=0.289  Sum_probs=88.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Q 009331           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA  173 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  173 (537)
                      +..|.||||.|+..|+.++++.|++ +.++. ..|..|+||||+|+..|+.+++++|+++|+++....+.+|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3456677777777777777777776 44433 346667777777777777777777777776663333366677777777


Q ss_pred             HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331          174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL  253 (537)
Q Consensus       174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  253 (537)
                      ..|+.+++++|+++++++. ..|..|.||||+|++.++.                  ..+.++|++|+..|..+++++|.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHH
Confidence            7777777777777666643 3366666777666653211                  23456666666666666666665


Q ss_pred             h
Q 009331          254 N  254 (537)
Q Consensus       254 ~  254 (537)
                      +
T Consensus       180 ~  180 (183)
T 3deo_A          180 G  180 (183)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=2.5e-21  Score=185.09  Aligned_cols=137  Identities=26%  Similarity=0.294  Sum_probs=66.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  176 (537)
                      |.||||.|+..|+.++++.|++ +.++. ..|..|+||||+|+..|+.+++++|+++|+++....+..|.||||+|+..|
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            4444444444444444444444 33222 224444555555555555555555555544442222244555555555555


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +.+++++|+++++++. ..|..|.||||+|+..++.                  ..+.||||+|+..|+.+++++|++
T Consensus       123 ~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          123 RPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHHcChHHHHHHHHH
Confidence            5555555555544432 2244555555555432221                  235566666666666666666665

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=1e-20  Score=180.75  Aligned_cols=144  Identities=25%  Similarity=0.276  Sum_probs=128.5

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (537)
                      +..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|+++++++....+..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3468999999999999999999999 8776 6688999999999999999999999999999987665588999999999


Q ss_pred             hcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331          208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK  287 (537)
Q Consensus       208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~  287 (537)
                      ..|+.+++++|++ .+.+++.+|..|+||||+|+..++                  +..+.|||++|+..|+.+++++|.
T Consensus       120 ~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          120 GYVRPEVVEALVE-LGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence            9999999999999 477899999999999999986221                  256789999999999999999999


Q ss_pred             hcCCC
Q 009331          288 EHGVP  292 (537)
Q Consensus       288 ~~ga~  292 (537)
                      +++.+
T Consensus       181 ~~~~~  185 (244)
T 3ui2_A          181 GQVFE  185 (244)
T ss_dssp             HHHEE
T ss_pred             Hhccc
Confidence            87543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=4e-21  Score=166.25  Aligned_cols=125  Identities=24%  Similarity=0.351  Sum_probs=70.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHH
Q 009331           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHT  137 (537)
Q Consensus        58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  137 (537)
                      +|..|.||||+|+..|+.+++++|++.+  .+.+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~   82 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHD   82 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCCHHHH
Confidence            3555666666666666666666666654  23344555566666666666666666666665554433 25555666666


Q ss_pred             HHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHh
Q 009331          138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS  186 (537)
Q Consensus       138 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  186 (537)
                      |+..|+.+++++|+++|+++ ...|.+|.||||+|+..+..+++++|.+
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            66666666666666665554 4455556666666655555555544443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=7.1e-20  Score=178.33  Aligned_cols=195  Identities=18%  Similarity=0.193  Sum_probs=139.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (537)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  172 (537)
                      .|..+.+.++.+...|+..+.+++....+.........+...    ......-..+++................++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            456677788888888887666554433222111000011111    1111111222332222111111222335688999


Q ss_pred             HHCCcHHHHHHHHhcCCCCccc-----CCCCCChHHHHHHhc---CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          173 ARNGHLEIVKALLSKEPGIVLR-----NDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      +..|+.+.+..+++.+.+....     .|..|.||||+|+..   |+.+++++|++. +.++|.+|.+|+||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcC
Confidence            9999999999999988875433     377899999999998   899999999994 6778999999999999999999


Q ss_pred             cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       245 ~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      +.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+..
T Consensus       217 ~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          217 NAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999998 79999999999999999999999999999999998863

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=5e-20  Score=181.45  Aligned_cols=143  Identities=20%  Similarity=0.208  Sum_probs=117.4

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHHHcCCCcccc-----cccCCCcHHHHHHHC---CcHHHHHHHHhcCCCCcccCCCCCC
Q 009331          129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATI-----ARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQ  200 (537)
Q Consensus       129 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~  200 (537)
                      ....++|+.|+..|+.+.++.|++.|+++...     .+..|.||||+|+..   |+.+++++|+++++++.. .|..|+
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~-~d~~G~  227 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGN  227 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC-CCTTCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC-CCCCCC
Confidence            34557899999999999999999999887543     578899999999987   899999999999988654 478999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCCh
Q 009331          201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS  280 (537)
Q Consensus       201 t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~  280 (537)
                      ||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .|++      .|.||||+|+..|+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999 577789999999999999999999999999998 4554      578999999988764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=1.2e-19  Score=178.70  Aligned_cols=125  Identities=27%  Similarity=0.284  Sum_probs=77.9

Q ss_pred             CcHHHHHHHCCcHHHHHHHHhcCCCCccc-----CCCCCChHHHHHHhc---CCHHHHHHHHhcCCcccccccCCCCcHH
Q 009331          166 KTALHSAARNGHLEIVKALLSKEPGIVLR-----NDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVDAKGNSAL  237 (537)
Q Consensus       166 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~n~~d~~G~T~L  237 (537)
                      .++|+.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   ++.+++++|++. +.++|.+|.+|+|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHH
Confidence            34566666666666666666666654432     355666666666664   566666666663 445566666666666


Q ss_pred             HHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          238 HIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       238 h~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      |+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|++
T Consensus       231 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            66666666666666666 4666666666666666666666666666666666654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.3e-19  Score=153.57  Aligned_cols=109  Identities=28%  Similarity=0.344  Sum_probs=72.0

Q ss_pred             cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH
Q 009331          163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (537)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~  242 (537)
                      ..|.||||.|+..|+.+++++|++.++++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHH
Confidence            345566666666666666666666665543 335666666666666666666666666 345566677777777777777


Q ss_pred             hCcHHHHHHHhhhcCCCcccccCCCCCHHHHH
Q 009331          243 KGRVQIVQKLLNINGVDKAVINKSRETALDTA  274 (537)
Q Consensus       243 ~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A  274 (537)
                      .++.+++++|++ .|++++.+|..|.||+++|
T Consensus        83 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           83 EGHVSCVKLLLS-KGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHC
T ss_pred             cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHh
Confidence            777777777776 4777777777777777776

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=5.3e-20  Score=156.00  Aligned_cols=113  Identities=27%  Similarity=0.274  Sum_probs=77.5

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (537)
                      +..|.||||+|+..|+.+++++|++.+.++ ...|..|.||||+|+..|+.+++++|++.++++. ..|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHH
Confidence            345667777777777777777777777665 4556667777777777777777777777766643 34667777777777


Q ss_pred             hcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh
Q 009331          208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (537)
Q Consensus       208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~  243 (537)
                      ..|+.+++++|++. +.+++.+|.+|+||||+|...
T Consensus        82 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           82 YEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCCH
T ss_pred             HcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCCH
Confidence            77777777777773 555677777777777777433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=2.4e-20  Score=175.43  Aligned_cols=130  Identities=28%  Similarity=0.355  Sum_probs=87.6

Q ss_pred             ccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHH
Q 009331          162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIAT  241 (537)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~  241 (537)
                      +.+|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            4456667777777777777777776666543 336667777777777777777777777546667777777777777777


Q ss_pred             HhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331          242 RKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       242 ~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      ..|+.+++++|++ .|++++.+|..|.|||++|+..++.++++.|++.|+..
T Consensus       149 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          149 WKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            7777777777777 47777777777778888777777777777777776653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=2.2e-20  Score=175.58  Aligned_cols=136  Identities=22%  Similarity=0.284  Sum_probs=88.7

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhc-CCCCcccCCCCCChHHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMA  206 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A  206 (537)
                      +..|.||||+|+..|+.+++++|++.|.++ ...|..|.||||+|+..|+.+++++|++. +.++ ...|..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence            455667777777777777777777777665 45566777777777777777777777776 4443 34467788888888


Q ss_pred             HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCC
Q 009331          207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR  267 (537)
Q Consensus       207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g  267 (537)
                      +..|+.+++++|++. +.+++.+|.+|+||||+|+..++.++++.|++ .+++.+..|.++
T Consensus       148 ~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~  206 (222)
T 3ehr_A          148 AWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED  206 (222)
T ss_dssp             HHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence            888888888888874 56678888888888888888888888888877 566666655543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=6.3e-19  Score=171.60  Aligned_cols=193  Identities=19%  Similarity=0.173  Sum_probs=139.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHH
Q 009331           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHT  137 (537)
Q Consensus        58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  137 (537)
                      .|..+.+.|+.+...|+....+++............+ .+....+    ....-..+++...........+....++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~-~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN-PGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCC-TTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCC-CCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            4677889999999999987776654332111110111 1111111    1111112233322222111111223478999


Q ss_pred             HHhCCCHHHHHHHHHcCCCccc-----ccccCCCcHHHHHHHC---CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhc
Q 009331          138 ASSQGHVEVVKFLLEKGSTLAT-----IARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG  209 (537)
Q Consensus       138 A~~~g~~~iv~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  209 (537)
                      |+..|+.+.++.+++.|.++..     ..+..|.||||+|+..   |+.+++++|+++++++.. .|..|.||||+|+..
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLT  215 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHHHHHT
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-cCCCCCCHHHHHHHc
Confidence            9999999999999999988632     3377899999999998   899999999999988654 488999999999999


Q ss_pred             CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331          210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV  258 (537)
Q Consensus       210 ~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~  258 (537)
                      |+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++. |+
T Consensus       216 g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga  262 (278)
T 1dcq_A          216 DNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQA-LS  262 (278)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred             CCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            99999999999 6778999999999999999999999999999984 44

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=2.3e-18  Score=138.12  Aligned_cols=93  Identities=33%  Similarity=0.548  Sum_probs=73.5

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHc
Q 009331          198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKT  277 (537)
Q Consensus       198 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~  277 (537)
                      +|+||||+|+..|+.+++++|++ .+.++|.+|.+|+||||+|+..++.+++++|++ .|++++.+|..|.|||++|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence            36788888888888888888887 456677888888888888888888888888887 6788888888888888888888


Q ss_pred             CChhHHHHHHhcCCC
Q 009331          278 GHSEIGVILKEHGVP  292 (537)
Q Consensus       278 ~~~~i~~~L~~~ga~  292 (537)
                      ++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            888888888888763

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=3.2e-18  Score=172.60  Aligned_cols=145  Identities=21%  Similarity=0.200  Sum_probs=89.7

Q ss_pred             CCChHHHHHHhC-CCHHHHHHHHHcCCCcccccc--cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHH
Q 009331          130 SNTTALHTASSQ-GHVEVVKFLLEKGSTLATIAR--SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA  206 (537)
Q Consensus       130 ~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  206 (537)
                      .+.||||.|+.. |+.++++.|+++|++++ ..+  ..|.||||+|+..|+.+++++|++++.++. ..|..|.||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence            445677777777 77777777777777763 344  667777777777777777777777777654 3467777777777


Q ss_pred             HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc--CCCcccccCCCCCHHHHHHHc
Q 009331          207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN--GVDKAVINKSRETALDTAEKT  277 (537)
Q Consensus       207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~--g~~~~~~~~~g~t~L~~A~~~  277 (537)
                      +..|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|+...  +.+....+..+.|+++++...
T Consensus       276 ~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          276 TILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            77777777777777 45666777777777777777777777777777532  122334455566666665543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=4.8e-18  Score=171.33  Aligned_cols=147  Identities=19%  Similarity=0.229  Sum_probs=83.7

Q ss_pred             CCCCChHHHHHHHc-CCHHHHHHHHHhCChhhhcCC--CCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHH
Q 009331           94 ARNGYDAFHIAAKQ-GCLEVLKILMEALPELLMTFD--SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH  170 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  170 (537)
                      +..+.|+||.|+.. |+.++++.|++.+.++... +  ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            33455677777766 7777777777766665443 3  56677777777777777777777777665 455666777777


Q ss_pred             HHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCC--cccccccCCCCcHHHHHHHh
Q 009331          171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP--VIINMVDAKGNSALHIATRK  243 (537)
Q Consensus       171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~--~~~n~~d~~G~T~Lh~A~~~  243 (537)
                      +|+..|+.+++++|+++++++. ..|..|.||||+|+..++.+++++|+....  ......+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            7777777777777777766653 336667777777777777777777765432  22233445566777766543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=8.7e-18  Score=134.72  Aligned_cols=91  Identities=40%  Similarity=0.615  Sum_probs=48.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhC
Q 009331           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (537)
Q Consensus        62 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (537)
                      |.||||+|+..|+.+++++|++.+  .+.+.+|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHc
Confidence            455555555555555555555544  223344555555555555555555555555555544322 45555555555555


Q ss_pred             CCHHHHHHHHHcCC
Q 009331          142 GHVEVVKFLLEKGS  155 (537)
Q Consensus       142 g~~~iv~~Ll~~~~  155 (537)
                      |+.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            55555555555543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=9.3e-18  Score=140.17  Aligned_cols=107  Identities=35%  Similarity=0.481  Sum_probs=75.8

Q ss_pred             cccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331          161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (537)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A  240 (537)
                      .|.+|.||||.|+..|+.+++++|++.++++. ..|..|.||||+|+..++.+++++|++ .+.+++.+|..|+||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence            45667777777777777777777777766643 336677777777777777777777777 3555677777788888888


Q ss_pred             HHhCcHHHHHHHhhhcCCCcccccCCCCCH
Q 009331          241 TRKGRVQIVQKLLNINGVDKAVINKSRETA  270 (537)
Q Consensus       241 ~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~  270 (537)
                      +..++.+++++|++ .|++++..+..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDA-KGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence            88888888887777 677877777777765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.69  E-value=3.8e-17  Score=136.46  Aligned_cols=106  Identities=37%  Similarity=0.477  Sum_probs=62.7

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (537)
                      |.+|.||||+|+..|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|++.+++.. ..|..|.||||+|+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLAK   83 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHH
Confidence            555666666666666666666666666554 3445556666666666666666666666655543 23556666666666


Q ss_pred             hcCCHHHHHHHHhcCCcccccccCCCCcH
Q 009331          208 KGQSIELVDELVKVEPVIINMVDAKGNSA  236 (537)
Q Consensus       208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~  236 (537)
                      ..++.+++++|++ .+.++|.++..|.||
T Consensus        84 ~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDA-KGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence            6666666666665 445566666666655

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.61  E-value=1.3e-15  Score=126.04  Aligned_cols=92  Identities=25%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHH
Q 009331          193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD  272 (537)
Q Consensus       193 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~  272 (537)
                      ...|.+|.|+||.|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHH
Confidence            3446777788888888888888888887 456677788888888888888888888888887 57888888888888888


Q ss_pred             HHHHcCChhHHHHH
Q 009331          273 TAEKTGHSEIGVIL  286 (537)
Q Consensus       273 ~A~~~~~~~i~~~L  286 (537)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888887765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.59  E-value=3.6e-15  Score=123.39  Aligned_cols=93  Identities=30%  Similarity=0.380  Sum_probs=59.7

Q ss_pred             HHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChH
Q 009331           55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA  134 (537)
Q Consensus        55 l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  134 (537)
                      ....+.+|.||||+|+..|+.+++++|++.+  .+.+..|..|.||||+|+..|+.+++++|++.+.++.. .|..|.||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tp   93 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTA   93 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcH
Confidence            4455667777777777777777777777765  33445566677777777777777777777777665443 36667777


Q ss_pred             HHHHHhCCCHHHHHHH
Q 009331          135 LHTASSQGHVEVVKFL  150 (537)
Q Consensus       135 Lh~A~~~g~~~iv~~L  150 (537)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            7777777777776665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	537
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-33
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-28
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-18
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	7e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	7e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	8e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 4e-33
 Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 20/283 (7%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  D+  L   V+   V+LV  ++    ++  +E      + G T L+ A +    D+V 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVE 56

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
            ++R+       ++ +NG   F +AA  G +++LK+ +      +   D    TA   A+
Sbjct: 57  LLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAA 113

Query: 140 SQGHVEVVKFLLEKGSTL---------ATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
             G V+ +KFL ++G+ +             R  G TAL  AA  GH+E++K LL +   
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 191 IVLRNDKKGQTALHMAVKGQSIELVDELVKV---EPVIINMVDAKGNSALHIATRKGRVQ 247
            V   D  G+ AL  A+       V+ +  +       +N+   +G + L +A  K  + 
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           +VQ+LL    ++    +   +TAL  A +    +I  +L + G
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 2e-20
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 8/188 (4%)

Query: 7   QQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELR----EMLSKMNQSG 62
           +    K            T        G V+ +  +     ++ LR    E   ++ + G
Sbjct: 89  KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
            TAL  AAE G+V++++ ++      +       G +A   A        ++ +   L +
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 123 L---LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE 179
               +        T L  A  + H+ +V+ LLE+         S+GKTAL  A      +
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 180 IVKALLSK 187
           I + L  +
Sbjct: 268 IAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 4e-16
 Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 45/206 (21%)

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL----- 185
           +   L  A     V++V+ LLE G+ +       G T LH+A +    +IV+ LL     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 186 ---------------------------SKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
                                        +   V   D  G TA   A     ++ +  L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 219 VKVEP---------VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKS--- 266
            K                 +   G +AL  A  KG V++++ LL+  G D    +     
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 267 -RETALDTAEKTGHSEIGVILKEHGV 291
               AL +++ +    I  +L +HG 
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGA 210

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV 215
           A       L  A +N  +++V+ LL     +  + ++ G T LH AV+    ++V
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 6e-30
 Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G + +V +++       +       N   ET L++AA  G+ ++ + +++ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTF----------------- 127
              +    KA++     H AA+ G   ++K+L+E      +                   
Sbjct: 56  K--AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 113

Query: 128 ---------------DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
                               T LH A+  G V V + LLE+ +     A  NG T LH A
Sbjct: 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVA 172

Query: 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232
             + +L+IVK LL +           G T LH+A K   +E+   L++           +
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQ 230

Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
           G + LH+A ++G  ++V  LL+         NKS  T L    + GH  +  +L +HGV
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGV 288

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 6e-29
 Identities = 73/268 (27%), Positives = 120/268 (44%), Gaps = 13/268 (4%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           K+  TPL    + G V +   ++                ++G T L+VA  +  +D+V+ 
Sbjct: 130 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAA------GKNGLTPLHVAVHHNNLDIVKL 183

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140
           ++    +  +   A NGY   HIAAKQ  +EV + L++              T LH A+ 
Sbjct: 184 LLPRGGSPHS--PAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQ 240

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQ 200
           +GH E+V  LL K +    +   +G T LH  A+ GH+ +   L+     +V    + G 
Sbjct: 241 EGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGY 298

Query: 201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDK 260
           T LH+A    +I+LV + +      +N     G S LH A ++G   IV  LL  NG   
Sbjct: 299 TPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASP 356

Query: 261 AVINKSRETALDTAEKTGHSEIGVILKE 288
             ++    T L  A++ G+  +  +LK 
Sbjct: 357 NEVSSDGTTPLAIAKRLGYISVTDVLKV 384

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 1e-26
 Identities = 64/257 (24%), Positives = 120/257 (46%), Gaps = 14/257 (5%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           K   TPL   V   ++++V  ++   G             +G T L++AA+   V++ R 
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP------AWNGYTPLHIAAKQNQVEVARS 216

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140
           +++Y  ++ A  ++  G    H+AA++G  E++ +L+       +  + S  T LH  + 
Sbjct: 217 LLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQ 273

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQ 200
           +GHV V   L++ G  +       G T LH A+  G++++VK LL  +  +  +  K G 
Sbjct: 274 EGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGY 331

Query: 201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ--KLLNINGV 258
           + LH A +    ++V  L+K      N V + G + L IA R G + +    K++     
Sbjct: 332 SPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 390

Query: 259 DKAVINKSRETALDTAE 275
              V +K R +  +T +
Sbjct: 391 FVLVSDKHRMSFPETVD 407

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 7e-24
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 7/250 (2%)

Query: 42  MISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF 101
           + +    +E     + M + G T L+VAA+YG V +   ++     +      +NG    
Sbjct: 112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPL 169

Query: 102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
           H+A     L+++K+L+            +  T LH A+ Q  VEV + LL+ G + A   
Sbjct: 170 HVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAE 227

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
              G T LH AA+ GH E+V  LLSK+    L  +K G T LH+  +   + + D L+K 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIK- 285

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281
             V+++     G + LH+A+  G +++V+ LL       A   K   + L  A + GH++
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTD 344

Query: 282 IGVILKEHGV 291
           I  +L ++G 
Sbjct: 345 IVTLLLKNGA 354

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  112 bits (281), Expect = 5e-28
 Identities = 47/265 (17%), Positives = 81/265 (30%), Gaps = 37/265 (13%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
            + +        TG     LD +     +   E++  +      A  +AAE G++ ++  
Sbjct: 88  IKSEVICFVAAITGCSS-ALDTLCLL--LTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTA 138
           +     T +  +     Y AF +AA+ G L VL  L E        M    +       A
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 139 SSQGHVEVVKFLLEKGSTLAT---IARSNG------------------KTALHSAARNGH 177
             +GH  V+ FLL+    LA         G                    A   +  +G 
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264

Query: 178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI----INMVDAKG 233
            ++V                     L        ++ +  L+ +  +        +    
Sbjct: 265 FDLVTKSECL-------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 317

Query: 234 NSALHIATRKGRVQIVQKLLNINGV 258
           N  L +A R G       LL+I  V
Sbjct: 318 NELLRLALRLGNQGACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 93.0 bits (230), Expect = 3e-21
 Identities = 41/279 (14%), Positives = 81/279 (29%), Gaps = 32/279 (11%)

Query: 18  LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
           +    +D  L+ +       L    IS+         L  ++      +++        +
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISAN-----ELSLMTLSYKEAIHIFLPGTKNMEQV 61

Query: 78  VREMIRYHDTSLAG---------IKARNGYDAFHIAAKQGCLEVLKILMEALP--ELLMT 126
            + +  Y+                K         +AA  GC   L  L   L   E++  
Sbjct: 62  RQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV 121

Query: 127 FDSSNTTALHTASSQGHVEVVKFLLEKG-STLATIARSNGKTALHSAARNGHLEIVKALL 185
             + N  A   A+  GH+ V+  L E   + +  + ++    A   AA NGHL ++  L 
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

Query: 186 SKEPGIVLR--NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
              P         +        AV      +++ L+    ++          A       
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------AYAEIHEFEY 233

Query: 244 GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
           G   +   +            K    A   +   G  ++
Sbjct: 234 GEKYVNPFIAR-----HVNRLKEMHDAFKLSNPDGVFDL 267

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 19/144 (13%), Positives = 34/144 (23%), Gaps = 25/144 (17%)

Query: 40  LDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA----- 94
                  G   +   L         A     EYG   +   + R+ +       A     
Sbjct: 201 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 260

Query: 95  RNGY----------------DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT----TA 134
            +G                         +  L+ ++ L+       +   ++        
Sbjct: 261 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 320

Query: 135 LHTASSQGHVEVVKFLLEKGSTLA 158
           L  A   G+      LL   S LA
Sbjct: 321 LRLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 20/168 (11%), Positives = 35/168 (20%), Gaps = 26/168 (15%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +  N   L          + +  +                 +         ++ + L   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
                 RN K+  +  H                           K      +A   G   
Sbjct: 69  YAHYN-RNAKQLWSDAHKK-----------------------GIKSEVICFVAAITGCSS 104

Query: 248 IVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293
            +    LL  +     VI      A   A + GH  +   L E     
Sbjct: 105 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 4e-22
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           +   A  G ++ ++E I     SLA    ++   A H A   G  E+++ L++    +  
Sbjct: 7   VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D+  +  LH A+S G  E+VK LL KG+ +      NG T LH AA     EI   LL
Sbjct: 66  KDDAGWSP-LHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
                   + D    TA+H A    +++++  L+  +    N+ D +GN+ LH+A  + R
Sbjct: 124 EGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEER 181

Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
           V+  + L++  G    + NK  +T L  A+  G   I   + E
Sbjct: 182 VEEAKLLVS-QGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 5e-22
 Identities = 47/231 (20%), Positives = 100/231 (43%), Gaps = 12/231 (5%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
            +  + +L  +G +E + + I +   +      ++ +Q   TAL+ A   G+ ++V  ++
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSL-----ATRTDQDSRTALHWACSAGHTEIVEFLL 57

Query: 83  RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
           +          A         +A +  +    +   A        + +  T LH A+S+ 
Sbjct: 58  QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN---AVNQNGCTPLHYAASKN 114

Query: 143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
             E+   LLE G+           TA+H AA  G+L+++  LL  +    ++ D +G T 
Sbjct: 115 RHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTP 172

Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
           LH+A   + +E    LV  +   I + + +  + L +A + G   I+++++
Sbjct: 173 LHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 3e-14
 Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG------------- 176
           SN   +   +  G +E +K  +    +LAT    + +TALH A   G             
Sbjct: 3   SNLM-VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 177 -------------------HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE 217
                                + +   L  +   V   ++ G T LH A      E+   
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKT 277
           L++      +  D    +A+H A  KG ++++  LL          +    T L  A   
Sbjct: 122 LLEGG-ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDE 179

Query: 278 GHSEIGVILKEHGV 291
              E   +L   G 
Sbjct: 180 ERVEEAKLLVSQGA 193

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.8 bits (221), Expect = 9e-21
 Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 15/251 (5%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYH-DTSLAGIKARNGYDAFHIAAKQGCLEVL 113
              + + G+TAL++A  + +   +  ++ +        ++   G  A H+AA  G    +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG------------STLATIA 161
           + L  A   +L+     +T   H A           LL+              +      
Sbjct: 62  EKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
                      ++       +         +   +  G T LH+AV  +  E+V  L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281
              +       G + LH+A       +++ LL   G D         T L +A    +  
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPI 239

Query: 282 IGVILKEHGVP 292
           +  +L+ HG P
Sbjct: 240 LARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (194), Expect = 3e-17
 Identities = 50/252 (19%), Positives = 88/252 (34%), Gaps = 21/252 (8%)

Query: 24  DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
           DT L   V       +  ++      E    L   N  G+TAL++AA  G    V ++  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 84  YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE-------------LLMTFDSS 130
                   +  R G+ A H+A +        +L++  P                 T D+S
Sbjct: 67  AGAGV--LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           +  A   +      E      +    L      +G T LH A  +   E+V+ L      
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 191 IVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
           +       G+T LH+AV+ Q+  +++ L+K            G + L  A  +    + +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 251 KLLNINGVDKAV 262
            L   +G  +  
Sbjct: 243 LLRA-HGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 9/206 (4%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           +G TALH A  + H   +  LL    G    +  +  GQTALH+A        V++L   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING-VDKAVINKSRETALDTAEKTGHS 280
              ++        +  H+A R         LL       +   +     + D    T H+
Sbjct: 68  GAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 281 EIGVILKEHG----VPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIA 336
              V  + +      P  +  + Q  +          +     D                
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 337 KRINKMHTEGLNNA-INSTTVVAVLI 361
                  T         + +V+ +L+
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLL 212

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETALDTAEKTGH 279
           +   V   G++ALH+A        +  LL         ++      +TAL  A   G 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGE 57

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.7 bits (208), Expect = 1e-18
 Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 51/232 (21%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
              +     H++      EV          L +  D    T LH  +S  ++E+VK L++
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 153 KGS----------TLATIAR--------------------------SNGKTALHSAARNG 176
            GS          +    A                           S  +T LH      
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 177 H-----------LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
                       L+I+   + K+    +++    + +      G+  + + E + ++ +I
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 226 ---INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA 274
              +N  D+ G++ L+IA R G + IV  LL+  G D  + NKS    +D  
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 16/173 (9%)

Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188
           SSN    H +      EV          L      +G T LH      +LE+VK L+   
Sbjct: 71  SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

Query: 189 PGIVLRNDKKGQTALHMAVKGQ---SIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
               L  D  G++ L  AVK          + L+      + + D+   + LH       
Sbjct: 131 SN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 189

Query: 246 V------------QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 286
           +             ++  ++             +E+  +         I   L
Sbjct: 190 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 5e-09
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 1/128 (0%)

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +   +  L         E+  +L +             Q   H++      E+ D     
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281
           +  +   VD  GN+ LH  T    +++V+ L+  +G ++   +   E+ L  A K+ ++ 
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 282 IGVILKEH 289
                +  
Sbjct: 155 DSGTFEAL 162

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 41/243 (16%), Positives = 74/243 (30%), Gaps = 12/243 (4%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
                L         E+   L    S   +   S+ +   H +  +   E+  A  + + 
Sbjct: 38  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 97

Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK---GRV 246
            + +  D+ G T LH      ++ELV  LVK         D  G S L  A +       
Sbjct: 98  NLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDS 156

Query: 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI---KPQANS 303
              + LL+       + +    T L     T          ++ +         K     
Sbjct: 157 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 216

Query: 304 ARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEG---LNNAI--NSTTVVA 358
                +  S    +  ++ +   E       IA  +N   + G   LN A    + ++V 
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

Query: 359 VLI 361
            L+
Sbjct: 277 ALL 279

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.2 bits (201), Expect = 2e-18
 Identities = 50/238 (21%), Positives = 89/238 (37%), Gaps = 12/238 (5%)

Query: 24  DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
           + PL           V +++ S   +     L + +Q G   L+ +  +   ++   ++ 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 84  YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT--TALHTASSQ 141
             +         +        A       +   +   P        +N   T LH A  +
Sbjct: 56  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 115

Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT 201
              EV +FL+E G++   I     +  LH AA  G L++++ L       V   DK+G T
Sbjct: 116 KWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259
            L  A+     +    LV+      ++VD KG  A  +A  +   Q+ +  LN N VD
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN-NVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.4 bits (186), Expect = 2e-16
 Identities = 39/231 (16%), Positives = 80/231 (34%), Gaps = 8/231 (3%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             L+ A        V+E++     SL   K ++G    H +      E+   L+  +  +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLL---EKGSTLATIARSNGKTALHSAARNGHLEI 180
            +     ++       +     +                   + G T LH A      E+
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
            + L+     + ++ DK  Q  LH A    S++L++ L  +    +N  D +G + L  A
Sbjct: 121 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 241 TRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
             +G       L+   G +  +++     A D A    + ++      + V
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 12/60 (20%), Positives = 18/60 (30%)

Query: 234 NSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293
           N  LH A  +     VQ+LL+         ++     L  +      EI   L       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.1 bits (201), Expect = 5e-18
 Identities = 44/264 (16%), Positives = 93/264 (35%), Gaps = 26/264 (9%)

Query: 43  ISSYGDMELREMLSKM------NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-- 94
             + G   + E +++        +   T L+  A     +   ++I +         A  
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 67

Query: 95  ----RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
                +      +A       ++  LM+A  +    ++ S  +ALH A++     ++ ++
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYM 126

Query: 151 LEKGSTLATIARSNGKTALHS--AARNGH----------LEIVKALLSKEPGIVLRNDKK 198
           L        I   +          A N            +E    +             K
Sbjct: 127 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
           G+TALH A +  ++ +V  LV  +    +  D  G + + +A ++GR+++V  L+   G 
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGA 245

Query: 259 DKAVINKSRETALDTAEKTGHSEI 282
               ++ +  TA   A+   H  I
Sbjct: 246 SVEAVDATDHTARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 73.2 bits (178), Expect = 5e-15
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
              +      + Y   +    +   G  A H AA+   + ++K L+          D   
Sbjct: 162 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 221

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
            T +  A+ +G +EVV +L+++G+++     +   TA   A  N H  IV    
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.7 bits (161), Expect = 8e-13
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
                TALH A+   ++ +VK+L+ +  +       +GKT +  AA+ G +E+V  L+ +
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
              +    D    TA  +A       +VD   +
Sbjct: 244 GASVEAV-DATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             LHT ++ G   + + +  +   +  I   + +T LH  A N   E  + L+  E    
Sbjct: 4   IKLHTEAA-GSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 193 LRN-------DKKGQTALHMAVKGQSIE 213
           +         D    T L +AV  +   
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 41/248 (16%), Positives = 83/248 (33%), Gaps = 22/248 (8%)

Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
           E+ + +  E      + E I     ++  I  R+     H  A     E  + L+    +
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 123 LL-------MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175
                       D    T L  A       +V +L++ G+      +S      H AA N
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAAN 117

Query: 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS------------IELVDELVKVEP 223
               ++  +L+         +        + +   +            +E   ++     
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG 283
              +    KG +ALH A +   + IV+ L+   G +K   ++  +T +  A + G  E+ 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 284 VILKEHGV 291
           + L + G 
Sbjct: 238 MYLIQQGA 245

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 17/115 (14%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 7   QQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETAL 66
           +       +K     +  T L    +  ++ +V  ++   G  + ++     ++ G+T +
Sbjct: 171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-----DEDGKTPI 225

Query: 67  YVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEA 119
            +AA+ G +++V  +I+      A ++A +   + A  +A       ++ I    
Sbjct: 226 MLAAQEGRIEVVMYLIQQG----ASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 6   EQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETA 65
           +     K   K    +   TP+    + G +E+V+ +I     +E        + +  TA
Sbjct: 204 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV------DATDHTA 257

Query: 66  LYVAAEYGYVDMVREMIRY 84
             +A    + ++V    R 
Sbjct: 258 RQLAQANNHHNIVDIFDRC 276

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 3e-17
 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEA 119
           G+T L++A   G +  V  ++         +   N       H+A       V+++L+ A
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS---TLATIARSNGKTALHSAARNG 176
               +       T A H A        ++ LL+  +           +G TALH A    
Sbjct: 63  GASPMALDRHGQTAA-HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA 236
             E V+ LL +   I   + K G++ L  AV+  S+  + +L+      +N     G+SA
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS-MVQLLLQHGANVNAQMYSGSSA 180

Query: 237 LHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
           LH A+ +G + +V+ L+  +G D ++ N   +T L  A      +I
Sbjct: 181 LHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 1e-11
 Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
            N  G TAL+VA      + V+ ++      +  +  ++G      A +   L ++++L+
Sbjct: 106 RNYDGLTALHVAVNTECQETVQLLLERGA-DIDAVDIKSGRSPLIHAVENNSLSMVQLLL 164

Query: 118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH 177
           +     +     S ++ALH+AS +G + +V+ L+  G+   ++   +  T L  A     
Sbjct: 165 QH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRV 222

Query: 178 LEIVK 182
           ++I++
Sbjct: 223 IDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 164 NGKTALHSAARNGHLEIVKALLS--KEPGI-VLRNDKKGQTALHMAVK 208
           +G T LH A   G+L  V  L++  ++ G  +   +   QT LH+AV 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 77.1 bits (188), Expect = 3e-16
 Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 19/286 (6%)

Query: 6   EQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETA 65
           + +    K KK      D     +   +G  E VL ++    D+         N  G TA
Sbjct: 23  DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA------NVDGLTA 76

Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L+ A     VDMV+ ++              G+   H AA  G L++ + L+      + 
Sbjct: 77  LHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVG 133

Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             +S   T L  A  +   E+++  + +       AR   +  +   AR          L
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--------L 185

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
           +      +R+ K G TALH+A      E++  L++     +N+ D  G + LH A   G+
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
            +  + L+  N  D   +NK  +TA D A++     +  + K+  +
Sbjct: 245 EEACRILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.4 bits (163), Expect = 5e-13
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
             S  TALH A+++G+ EV+K L++    +  I   +G T LH+AA  G  E  + L+  
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
              +    +K GQTA  +A +   +  ++EL K + ++
Sbjct: 255 LCDMEAV-NKVGQTAFDVADE-DILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
           V     +    A   G  + V +LL   G D    N    TAL  A    + ++   L E
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 289 HGVPC 293
           +G   
Sbjct: 95  NGANI 99

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (176), Expect = 3e-15
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 10/221 (4%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEA 119
           G++ L++A  +    +  E+IR     LA +  +N       H+A      E+ + L+ A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 120 LPELLMTFDSSNTTALHTASS----QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175
             +  +     NT               V           ++      NG T LH A+ +
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNS 235
           G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K     +N V  +G S
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYS 180

Query: 236 ALHIATRKGRVQIVQKLLNINGVDKAVI--NKSRETALDTA 274
              +   +   +I Q+L  +  ++   +      E + DT 
Sbjct: 181 PYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 40/201 (19%)

Query: 24  DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
           D+ L   +      L +++I           L+  N   +T L++A      ++   ++ 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 84  Y-------------------------------------HDTSLAGIKARNGYDAFHIAAK 106
                                                 H  S+      NG+   H+A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 107 QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK 166
            G L ++++L+    ++      +  TALH A    + ++V  LL+ G+         G 
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGY 179

Query: 167 TALHSAARNGHLEIVKALLSK 187
           +            I + L   
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 2e-10
 Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 8/210 (3%)

Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPE---LLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
           +G    H+A       +   ++  +      L   ++   T LH A      E+ + LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 153 KGSTLATIARSNGKTALHSAAR----NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
            G                +  +    +  +            I+   +  G T LH+A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRE 268
              + +V+ LV +   +       G +ALH+A       +V  LL   G D   +     
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGY 179

Query: 269 TALDTAEKTGHSEIGVILKEHGVPCGKSIK 298
           +          + I   L +  +   + + 
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 5e-05
 Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 42  MISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF 101
           +  S     L  +L   N +G T L++A+ +GY+ +V  ++      +   +  NG  A 
Sbjct: 91  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE-LLVSLGADVNAQEPCNGRTAL 149

Query: 102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
           H+A      +++ +L++   ++         +       +    + + L +  
Sbjct: 150 HLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLT 201

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.0 bits (154), Expect = 3e-12
 Identities = 47/220 (21%), Positives = 93/220 (42%), Gaps = 11/220 (5%)

Query: 35  SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA 94
           + +++ D+++   ++      + M+++GET+L++AA +   D  + ++     + +    
Sbjct: 1   TAQVISDLLAQGAELN-----ATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT 55

Query: 95  RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
                   +A     + V +IL+      L       TT L  A+      +V+ L+   
Sbjct: 56  GRTPLHAAVA--ADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 113

Query: 155 STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
           + +   A ++GKTALH AA   + E V  LL        + D K +T L +A +  S E 
Sbjct: 114 ADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEA 171

Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
              L+        + D        +A+ +    IV +LL+
Sbjct: 172 SKALLD-NFANREITDHMDRLPRDVASERLHHDIV-RLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.7 bits (135), Expect = 7e-10
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 34/204 (16%)

Query: 111 EVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170
           +V+  L+    EL  T D +  T+LH A+     +  K LL+ G+   +   +       
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 171 SAARNGHL--------------------------------EIVKALLSKEPGIVLRNDKK 198
           + A +                                   E +   L      +   D  
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
           G+TALH A    + E V+  + +     +  D K  + L +A R+G  +  + LL+ N  
Sbjct: 123 GKTALHWAAAVNNTEAVNI-LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD-NFA 180

Query: 259 DKAVINKSRETALDTAEKTGHSEI 282
           ++ + +       D A +  H +I
Sbjct: 181 NREITDHMDRLPRDVASERLHHDI 204

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKG-----STLATIARSNGKTALHSAARN---GHLE 179
            ++   +L  A     +  +      G                +TALH A R+     L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI 239
           IV  L+     +  +  K      +  +   +     +L+      I + +  G + L I
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC--LKLLLRGKASIEIANESGETPLDI 120

Query: 240 ATRKGRVQIVQKLLN 254
           A R       + L  
Sbjct: 121 AKRLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 163 SNGKTALHS---AARNGHLEIVKALLSK-----EPGIVLRNDKKGQTALHMAVK---GQS 211
           ++    LHS   A +   +  +    +      E   +    +  +TALH+AV+     S
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
           + +VD LV+    +         +               KLL        + N+S ET L
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTA--LHYCCLTDNAECLKLLLRGKASIEIANESGETPL 118

Query: 272 DTAEKTGHSEIGVILKEHG 290
           D A++  H     +L +  
Sbjct: 119 DIAKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 37/171 (21%)

Query: 23  DDTPLQSL---VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
               L SL   V+T  +  +L   +   D+  +  L+  ++  ETAL++A          
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV------ 56

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
                                      +  L ++  L++    L       +T   +   
Sbjct: 57  --------------------------DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 90

Query: 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           +     +   L  K S    IA  +G+T L  A R  H    + L     G
Sbjct: 91  TDNAECLKLLLRGKASI--EIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 5e-09
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 4/125 (3%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
               L  AA  G V+ VR ++       A   A N Y    I         +  L+    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG----ANPNAPNSYGRRPIQVMMMGSARVAELLLLHG 58

Query: 122 ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV 181
                 D +  T     +++        +L +      +  + G+  +  A   GH ++ 
Sbjct: 59  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 182 KALLS 186
           + L +
Sbjct: 119 RYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 5e-08
 Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 3/124 (2%)

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           +   L TA+++G VE V+ LLE G   A     N                V  LL     
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGA 59

Query: 191 IVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
                D    T        +       ++      +++ DA G   + +A   G   + +
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 251 KLLN 254
            L  
Sbjct: 120 YLRA 123

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 6e-09
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 5/157 (3%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L  A+++G V+ V+ LL +           GKTAL           ++     + G  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE---LLKQGAS 60

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
                   T+              +++      +N+ D  G   +H+A ++G   +V  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
              + + +   +    T L+ A + G  ++  IL+ H
Sbjct: 121 AAESDLHRR--DARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 11/165 (6%)

Query: 22  RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREM 81
           R    L      G V+ V  ++              +N+ G+TAL V         +  +
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHREL-----VHPDALNRFGKTALQVMMFGSTAIALELL 55

Query: 82  IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ 141
            +                +    A +        ++      +   D +    +H A  +
Sbjct: 56  KQGASP----NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
           GH  VV FL  +         + G T L  A + G  ++V  L  
Sbjct: 112 GHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRET 269
           +    L  A  +G VQ V++LL+   V    +N+  +T
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT 38

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 7e-09
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             L  ++  G  D+V+ +I   D         +        A       +   +      
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVN 59

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA--LHSAARNGHLEIV 181
           +   DS   T LH A+S  +V+V KFL+E G+ +  +  S+ +TA         G+ +  
Sbjct: 60  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119

Query: 182 KALLSKEP 189
           + L   + 
Sbjct: 120 QFLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 8e-06
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 4/130 (3%)

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVII 226
             L  ++  G  ++V+ ++ +                           + + +    V +
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE--KTGHSEIGV 284
           N  D+ G + LH A     VQ+ + L+       A+     +TA D  E  + G+++   
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 285 ILKEHGVPCG 294
            L       G
Sbjct: 121 FLYGVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 34/125 (27%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTL--------------------------------ATI 160
             L  +S +G  ++V+ ++ +                                       
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA--LHMAVKGQSIELVDEL 218
           A S+G T LH AA   ++++ K L+     +        QTA      ++    +    L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 219 VKVEP 223
             V+ 
Sbjct: 123 YGVQE 127

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 1e-08
 Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 4/158 (2%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L +A+++G +E +  LL+       +   NG               +   L       
Sbjct: 3   NELASAAARGDLEQLTSLLQNN---VNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP 59

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
              D+ G   +H A +   ++ +  L++     +N+ D +GN  LH+A ++G +++V+ L
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
           +     +    N   +TA D A   G +E+  +++ +G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 37/157 (23%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME----- 118
             L  AA  G ++ +  +++ +      + A+NG+    +   +     +   +      
Sbjct: 3   NELASAAARGDLEQLTSLLQNN----VNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 119 ----------------------------ALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
                                            +   D+     LH A+ +GH+ VV+FL
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           ++  ++        G TA   A   G  E+V  + + 
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 4/155 (2%)

Query: 99  DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA 158
           +    AA +G LE L  L++    +    ++ N                           
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV----NAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 159 TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
              +     A+   A           L +    V   D +G   LH+A K   + +V+ L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 219 VKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
           VK     +   + KG++A  +A   GR ++V  + 
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKG 154
           +    TA   A   G  EVV  +   G
Sbjct: 130 NHKGDTACDLARLYGRNEVVSLMQANG 156

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (118), Expect = 5e-08
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L  A+  G  + V+ L+  G+   T     G + LH AA+ GH    +       G+ 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEV--LLRAGVS 59

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
                K           +    + E++      +N  D    +ALH AT     ++V +L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-EL 118

Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
           L   G D    +K  +TA D +   G+ ++  IL+
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 11/160 (6%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             L    R G  + V  ++++             +  G + L++AA+YG+      ++R 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
             +  A  K          +     +  + +   A        D    TALH A+   H 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQ 113

Query: 145 EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
           EVV+ L++ G+ +        KTA   +  NG+ ++ + L
Sbjct: 114 EVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (103), Expect = 5e-06
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             L  AA  G  D VR ++       A         +    A Q        ++      
Sbjct: 4   KKLLEAARAGQDDEVRILMANG----APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
                  + T LH A+S+GH  +V+ LL+ G+           TALH A  + H E+V+ 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
           L+     +  +  K  +TA  +++   + +L + L
Sbjct: 119 LIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (85), Expect = 7e-04
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
            +     A + G +D V++ +   +      +   G       A       +   +    
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKG 58

Query: 122 ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV 181
             +   D  + T L +A  +GHV  VK LL KG+   T+   +G TAL +       + +
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTALEATDN----QAI 113

Query: 182 KALL 185
           KALL
Sbjct: 114 KALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (84), Expect = 8e-04
 Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVII 226
                A +NG L+ VK  ++K   +    +   +   + A  GQ   L   L+K   +  
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
                       ++          KLL   G DK V      TAL+  +      +
Sbjct: 64  PDKHHITP---LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKAL 116

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 3/118 (2%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
                A   G ++ VK  + KG  +        K   ++A       +         G  
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF---LLLKGAD 60

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
           +    K      ++   +      +L+  +     +    G +AL     +    ++Q
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	537
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=309.74  Aligned_cols=263  Identities=27%  Similarity=0.398  Sum_probs=186.4

Q ss_pred             ChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHH
Q 009331           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (537)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (537)
                      ||||.||..|+.++|++|+++|.++      +..|..|+||||+|+..|+.++|++|+++|.  +.+..+.+|.||||+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--di~~~~~~g~t~L~~A   73 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP------NVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS------CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC--CSSCCCTTSCCHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC--CCCCCCCCCCCHHHHH
Confidence            7888888888888888888877653      4567778888888888888888888888764  4555677788888888


Q ss_pred             HHcCCHHHHHHHHHhCC---------------------------------------------------------------
Q 009331          105 AKQGCLEVLKILMEALP---------------------------------------------------------------  121 (537)
Q Consensus       105 a~~g~~~iv~~Ll~~~~---------------------------------------------------------------  121 (537)
                      +..|+.+++++|++..+                                                               
T Consensus        74 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~  153 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  153 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH
Confidence            88877777777765432                                                               


Q ss_pred             ---hhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccc--------------------------------ccccCCC
Q 009331          122 ---ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT--------------------------------IARSNGK  166 (537)
Q Consensus       122 ---~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~--------------------------------~~~~~g~  166 (537)
                         ++. ..+.+|.+|||+|+..|+.+++++|+++|+++..                                ..+.+|.
T Consensus       154 ~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  232 (408)
T d1n11a_         154 RDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV  232 (408)
T ss_dssp             TTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCC
Confidence               111 2245566677777777777777777766655411                                1123344


Q ss_pred             cHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcH
Q 009331          167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (537)
Q Consensus       167 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~  246 (537)
                      |||+.|+..+..++++.+.+...... ..+..|.|||+.|++.++.+++++|++ .+.+++..+..+.||||.++..++.
T Consensus       233 t~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         233 TPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CHHHHHHHhCcHhHhhhhhccccccc-cccCCCCChhhhhhhcCcHHHHHHHHH-CCCccccccccccccchhhcccCcc
Confidence            55555555555555555555544433 336778888998888888888888887 4555777777888888888888888


Q ss_pred             HHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCC
Q 009331          247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP  299 (537)
Q Consensus       247 ~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~  299 (537)
                      ++++++++ .|++++.+|.+|.||||+|++.|+.+++++|+++|+++......
T Consensus       311 ~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~  362 (408)
T d1n11a_         311 KLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD  362 (408)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSS
T ss_pred             eeeeeecc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            88888887 67888888888888888888888888888888888876654333

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-34  Score=277.03  Aligned_cols=100  Identities=24%  Similarity=0.317  Sum_probs=88.6

Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHH
Q 009331          193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD  272 (537)
Q Consensus       193 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~  272 (537)
                      ...|..|.||||+|+++++.+++++|++......+..+..|+||||+|+..++.+++++|++ .|++++.+|+.|.||||
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~  230 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLG  230 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             ccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHH
Confidence            34578899999999999999999999987666555667889999999999999999999998 68999999999999999


Q ss_pred             HHHHcCChhHHHHHHhcCCCC
Q 009331          273 TAEKTGHSEIGVILKEHGVPC  293 (537)
Q Consensus       273 ~A~~~~~~~i~~~L~~~ga~~  293 (537)
                      +|+..++.+++++|+++||+.
T Consensus       231 ~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         231 SALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHTSSCHHHHHHHHHTTCCC
T ss_pred             HHHHCCCHHHHHHHHHcCCCC
Confidence            999999999999999999973

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-34  Score=266.37  Aligned_cols=217  Identities=29%  Similarity=0.338  Sum_probs=110.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (537)
                      +.|+.+|..|+.+.|+.++... +...+.+|..|+||||+|+..|+.++++++++........ +..+.++++.++..|+
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccc-cccccccccccccccc
Confidence            4444445555544444444432 2233344444555555555555555555544444333322 3344455555555555


Q ss_pred             HHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q 009331          144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP  223 (537)
Q Consensus       144 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  223 (537)
                      .+++++|++++.++ ...|.+|.||||+|+..|+.+++++|++++.++. ..|..|.||||.|+..++.+++++|.+ .+
T Consensus        83 ~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~~~~~~~t~L~~a~~~~~~~~~~~L~~-~~  159 (223)
T d1uoha_          83 DEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLY-YK  159 (223)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TT
T ss_pred             cchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCccchhhhhcCCcchhhhhcc-cc
Confidence            55555555555443 3344555555555555555555555555554432 234555555555555555555555554 33


Q ss_pred             cccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331          224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK  287 (537)
Q Consensus       224 ~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~  287 (537)
                      .+++.+|.+|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+| ..|+.+++++|+
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             ceeeeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            4455555556666666666666666666655 4556666666666666555 245555555554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-34  Score=274.90  Aligned_cols=234  Identities=20%  Similarity=0.182  Sum_probs=184.2

Q ss_pred             ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCC
Q 009331           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (537)
Q Consensus        18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (537)
                      ..+++|.||||+||+.|+.+++++|++.+.+.   ..++.+|..|.||||+|+..|+.+++++|++.|  .+++..|.+|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~---~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~i~~~d~~g   78 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGG   78 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTS
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCcCCCCCCccchHHhhccccccccccccc--cccccccccc
Confidence            45789999999999999999999999988654   346778999999999999999999999999987  4566789999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCChhhhcCC---------CCCChHHHHHHh---CCCHHHHHHH-HHcCCCcccccccC
Q 009331           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFD---------SSNTTALHTASS---QGHVEVVKFL-LEKGSTLATIARSN  164 (537)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d---------~~g~tpLh~A~~---~g~~~iv~~L-l~~~~~~~~~~~~~  164 (537)
                      .||||+|+..|+.+++++|++..........         ....+.+..+..   .........+ ...+..+ ...+.+
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-n~~d~~  157 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYD  157 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCCTT
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccc-cccccc
Confidence            9999999999999999999987553221100         011111111111   1111111111 1112222 456788


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      |.||||+|+..|+.+++++|++.+.+.....+..|.||||+|++.|+.+++++|++ .+.+++.+|.+|+||||+|+.++
T Consensus       158 g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~  236 (255)
T d1oy3d_         158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRP  236 (255)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             CcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCC
Confidence            99999999999999999999999999887778899999999999999999999999 56889999999999999999999


Q ss_pred             cHHHHHHHhhhcCCC
Q 009331          245 RVQIVQKLLNINGVD  259 (537)
Q Consensus       245 ~~~iv~~Ll~~~g~~  259 (537)
                      +.+++++|++ +|++
T Consensus       237 ~~~i~~~Ll~-~Ga~  250 (255)
T d1oy3d_         237 NPILARLLRA-HGAP  250 (255)
T ss_dssp             CHHHHHHHHH-TTCC
T ss_pred             CHHHHHHHHH-cCCC
Confidence            9999999999 6875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=265.21  Aligned_cols=220  Identities=25%  Similarity=0.356  Sum_probs=199.2

Q ss_pred             CCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHH
Q 009331           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (537)
Q Consensus        23 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (537)
                      +++.|+.++..|+++.++.+++..+     ..++.+|..|+||||+||..|+.+++++|++.+..  ....+..+.++++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~-----~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~--~~~~~~~~~~~~~   75 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLH   75 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--SCCCCTTCCCHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCC-----CcCcCcCCCCCCHHHHHHHhhhhcccccccccccc--ccccccccccccc
Confidence            5789999999999999999998865     34678899999999999999999999999998643  3345667889999


Q ss_pred             HHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHH
Q 009331          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (537)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~  182 (537)
                      .|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|.++ ...+.+|.||||.|+..++.++++
T Consensus        76 ~~~~~~~~~i~~~Ll~~~~d~~~-~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~  153 (223)
T d1uoha_          76 IAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIH  153 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccchhHHHhccCceeEe-eCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhh
Confidence            99999999999999999987654 5899999999999999999999999999987 677899999999999999999999


Q ss_pred             HHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       183 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +|.+.+.++. ..|..|+||||.|+..|+.+++++|++ .+.+++.+|.+|+||||+| ..|+.+++++|++
T Consensus       154 ~L~~~~~~i~-~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         154 ILLYYKASTN-IQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             hhccccceee-eccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999998864 458999999999999999999999998 5788999999999999998 5799999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=264.93  Aligned_cols=225  Identities=23%  Similarity=0.251  Sum_probs=173.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChh--hhcCCCCCChHHHHHHh
Q 009331           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL--LMTFDSSNTTALHTASS  140 (537)
Q Consensus        63 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpLh~A~~  140 (537)
                      +||||.||+.|+.++|+.|++.. +...+.+|.+|+||||+|+..|+.+++++|++.++++  ....+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            36777777777777777776653 2345556677777777777777777777777766543  23446677788888888


Q ss_pred             CCCHHHHHHHHHcCCCcc-cccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHH
Q 009331          141 QGHVEVVKFLLEKGSTLA-TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (537)
Q Consensus       141 ~g~~~iv~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  219 (537)
                      .+..++++.++..+.... ...+..+.+|++.++..++.++++.|++.+..... .|..|+||||.|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc-cCCCCCCccchhhhccccccccccc
Confidence            888888877777765432 33456677888888888888888888888776543 4788889999999999999999999


Q ss_pred             hcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       220 ~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      +.++..++.+|.+|+||||+|+..|+.+++++|++..|++++.+|.+|.||||+|+   +.+++++|+++|++
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            87777888999999999999999999999999997678999999999999999987   35788999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-33  Score=268.54  Aligned_cols=265  Identities=25%  Similarity=0.343  Sum_probs=226.8

Q ss_pred             CCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHH
Q 009331           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (537)
Q Consensus        22 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (537)
                      ++.|+||.||+.|+.++|++|+++|.+.+.     ..+..|.||||+|+..|+.+++++|++.+.  .....+..+.+|.
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~-----~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~--~~~~~~~~~~~~~   76 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----QEEEGGWTPLHNAVQMSREDIVELLLRHGA--DPVLRKKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC-----CCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCc-----cCCCCCCCHHHHHHHcCCHHHhhhhccccc--cccccccccchhh
Confidence            357899999999999999999999987431     235679999999999999999999999874  3445677889999


Q ss_pred             HHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcc---------cccccCCCcHHHHH
Q 009331          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA---------TIARSNGKTALHSA  172 (537)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A  172 (537)
                      +.|+..+..+.....++....... .+..+.++++.|+..|+...+..++....+..         ...+..|.||||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T d1wdya_          77 LLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             HHHhhcCCccccchhhhhcccccc-cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHH
Confidence            999999999999999998766544 47889999999999999999999998765542         12345689999999


Q ss_pred             HHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh----cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHH
Q 009331          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK----GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI  248 (537)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~i  248 (537)
                      +..|+.+++++|+++........+..|.++++.+..    .+..+++++|++ .+.+++.+|.+|+||||+|+..|+.++
T Consensus       156 ~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~L~~a~~~~~~~~  234 (285)
T d1wdya_         156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGL  234 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCccchhhhcCcHHH
Confidence            999999999999986443345567888888777654    334579999998 567789999999999999999999999


Q ss_pred             HHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCC
Q 009331          249 VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  295 (537)
Q Consensus       249 v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~  295 (537)
                      +++|++..|++++.+|.+|.||||+|++.|+.+++++|+++||+++.
T Consensus       235 v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            99999878999999999999999999999999999999999999753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-33  Score=262.54  Aligned_cols=226  Identities=26%  Similarity=0.329  Sum_probs=201.4

Q ss_pred             CChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCccc-ccccCCCCChHHH
Q 009331           24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSL-AGIKARNGYDAFH  102 (537)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~Lh  102 (537)
                      .+|||+||+.|+.+.++.|++..+.     .++.+|.+|.||||+|+..|+.+++++|++.+.+.. ....+..|.+|+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~   75 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   75 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC-----cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccc
Confidence            4899999999999999999997653     367889999999999999999999999999875433 3456778999999


Q ss_pred             HHHHcCCHHHHHHHHHhCChh-hhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHH
Q 009331          103 IAAKQGCLEVLKILMEALPEL-LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (537)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv  181 (537)
                      +|+..+..++++.++..+... ....+..+.||++.++..++.+++++|++.+... ...+.+|.||||+|+..|+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          76 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccc
Confidence            999999999999999887643 3344678999999999999999999999999887 56788999999999999999999


Q ss_pred             HHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC
Q 009331          182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD  259 (537)
Q Consensus       182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~  259 (537)
                      ++|++.++......|..|.||||+|+++|+.+++++|++..+.+++.+|.+|+||||+|+.   .+++++|++ .|+|
T Consensus       155 ~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~-~g~d  228 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLN-NVVD  228 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHH-HCCC
T ss_pred             ccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHH-cCCC
Confidence            9999998877777899999999999999999999999987788899999999999999984   589999998 6765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=8.2e-33  Score=267.12  Aligned_cols=256  Identities=19%  Similarity=0.256  Sum_probs=206.7

Q ss_pred             CChHHHHHHcCC-HHHHHHHHhhCCchhHHHHHHccc-CCCCcHHHHHHHcCCHHHHHHHHHhCC------cccccccCC
Q 009331           24 DTPLQSLVRTGS-VELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMIRYHD------TSLAGIKAR   95 (537)
Q Consensus        24 ~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~~~~l~~~~-~~g~t~L~~Aa~~g~~~iv~~Ll~~~~------~~~~~~~~~   95 (537)
                      +||||.+++.+. .++++.|.+.+.+        ..+ .+|+||||+||..|+.++|+.|+.+..      +.+++.+|.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n--------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~   72 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN--------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC   72 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT--------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC--------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC
Confidence            589997777544 4444444444322        223 469999999999999999988865421      245667899


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCc--ccccccCCCcHHHHHH
Q 009331           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL--ATIARSNGKTALHSAA  173 (537)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~  173 (537)
                      +|+||||+|+..|+.+++++|+++|+++.. .|..|.|||++|+..++.++++++...+...  ....+..+.++.+.+.
T Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~-~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  151 (277)
T d2fo1e1          73 DENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  151 (277)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCeeecccccccccccccccccccccccc-ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHH
Confidence            999999999999999999999999988654 4889999999999999999999998764321  1345677889999998


Q ss_pred             HCCcHH---HHHHHHhcCCCC-------cccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh
Q 009331          174 RNGHLE---IVKALLSKEPGI-------VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (537)
Q Consensus       174 ~~g~~~---iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~  243 (537)
                      ..+..+   .+..+.+.....       ....+..|.|+||.++..++.+++++++...+.+.+.+|..|+||||+|+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~  231 (277)
T d2fo1e1         152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  231 (277)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            877543   444444433221       1234567999999999999999999988878888999999999999999999


Q ss_pred             CcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331          244 GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  289 (537)
Q Consensus       244 ~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~  289 (537)
                      |+.+++++|++ .|+|++.+|.+|+||||+|++.|+.+++++|.+.
T Consensus       232 g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         232 GRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             TCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999 7999999999999999999999999999999863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=6.7e-32  Score=262.98  Aligned_cols=245  Identities=25%  Similarity=0.280  Sum_probs=197.4

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChH
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA  100 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~  100 (537)
                      .++.|+|+.||..|+.++|++|+++|.++      +..|.+|.||||+|+..|+.++|++|++++..  ....+..+.+|
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv------n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~~~~  109 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADI------NYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIP  109 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCC------CccCCCCCcHHHHHHhcCCceeeeeecccccc--ccccccccccc
Confidence            34568999999999999999999999764      56789999999999999999999999998743  44567788999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHH
Q 009331          101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI  180 (537)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i  180 (537)
                      |+.|+..++.++++.|++.+..... .|..+.+|+++|+..++.+.++.++.............+..+.+       ...
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~  181 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------RDA  181 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------HHH
T ss_pred             ccccccccccchhhcccccCccccc-ccccCccccccccccccchhcccccccccccccccccccccccc-------ccc
Confidence            9999999999999999999876543 48899999999999999999999997643321211111111111       122


Q ss_pred             HHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCc
Q 009331          181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDK  260 (537)
Q Consensus       181 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~  260 (537)
                      ...+... .......+..|.||||.|+..|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|++ +|+|+
T Consensus       182 ~~~~~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv  258 (291)
T d1s70b_         182 RQWLNSG-HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDM  258 (291)
T ss_dssp             HHHHHHT-CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred             hhhhccc-ccccccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCC
Confidence            2223333 23334457889999999999999999999998 566789999999999999999999999999998 89999


Q ss_pred             ccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331          261 AVINKSRETALDTAEKTGHSEIGVILKE  288 (537)
Q Consensus       261 ~~~~~~g~t~L~~A~~~~~~~i~~~L~~  288 (537)
                      +.+|+.|+||||+|++    +++++|.+
T Consensus       259 ~~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         259 EAVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             TCCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             CCcCCCCCCHHHHHHH----HHHHHHHH
Confidence            9999999999999964    45555544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=263.19  Aligned_cols=252  Identities=26%  Similarity=0.348  Sum_probs=193.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (537)
                      ||||+||..|+.++|++|++.|.  +++..|..|+||||+|+..|+.+++++|+++|+++.. .|..|.||||+|+..|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~--~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~-~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC--CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSCCHHHHHHHHTC
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCC
Confidence            89999999999999999999874  4667899999999999999999999999999987654 48899999999998888


Q ss_pred             HHHHHHHHHcCCCc-----------------------------------------------------------------c
Q 009331          144 VEVVKFLLEKGSTL-----------------------------------------------------------------A  158 (537)
Q Consensus       144 ~~iv~~Ll~~~~~~-----------------------------------------------------------------~  158 (537)
                      .+++++|+..+.+.                                                                 .
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~  158 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP  158 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            88777776543321                                                                 0


Q ss_pred             cccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCccc--------------------------------CCCCCChHHHHH
Q 009331          159 TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR--------------------------------NDKKGQTALHMA  206 (537)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~--------------------------------~d~~g~t~Lh~A  206 (537)
                      ...+.+|.+|||.|+..|+.+++++|++++++....                                .+..|.||||.|
T Consensus       159 ~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  238 (408)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHH
Confidence            223446677777777777777777777766553211                                133445566666


Q ss_pred             HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHH
Q 009331          207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL  286 (537)
Q Consensus       207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L  286 (537)
                      +..+..+++++++. .....+..|..|.||||.|+..++.+++++|++ .|++++..+..+.|||+.+...++.++++++
T Consensus       239 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~l  316 (408)
T d1n11a_         239 AQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFL  316 (408)
T ss_dssp             HHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             HHhCcHhHhhhhhc-cccccccccCCCCChhhhhhhcCcHHHHHHHHH-CCCccccccccccccchhhcccCcceeeeee
Confidence            66666666666666 344567789999999999999999999999998 7999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCccchHHHHHHHhhhhhHHHHHHhh
Q 009331          287 KEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLE  323 (537)
Q Consensus       287 ~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (537)
                      ++.|++.......+..+   +...+.....++.+.+-
T Consensus       317 l~~g~~in~~d~~G~T~---Lh~A~~~g~~~iv~~Ll  350 (408)
T d1n11a_         317 LQHQADVNAKTKLGYSP---LHQAAQQGHTDIVTLLL  350 (408)
T ss_dssp             HHTTCCTTCCCTTSCCH---HHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccCCCCCCH---HHHHHHcCCHHHHHHHH
Confidence            99999876554433332   22333333444444443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-29  Score=231.82  Aligned_cols=221  Identities=25%  Similarity=0.298  Sum_probs=182.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhC--CcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           61 SGETALYVAAEYGYVDMVREMIRYH--DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      +|+||||+||..|+.++|+.|++..  ...+.+..|.+|+||||+|+..|+.+++++|++.++..... +..+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccc-ccccccccccc
Confidence            5888888888888888888887631  22445667888999999999999999999999888765543 67788899999


Q ss_pred             HhCCCHHHHHHHHHcCCCc---ccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHH
Q 009331          139 SSQGHVEVVKFLLEKGSTL---ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV  215 (537)
Q Consensus       139 ~~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  215 (537)
                      ...++.++++.+.......   .........++|+.+...........|.....+.....+..+.++|+.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            9999988888887754332   1233456678999999988999999998888877777778899999999999999999


Q ss_pred             HHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHH
Q 009331          216 DELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV  284 (537)
Q Consensus       216 ~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~  284 (537)
                      +.+++ .+...+.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|.|||++|++.|+.++++
T Consensus       161 ~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhh-hccccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99998 556678899999999999999999999999998 69999999999999999999888877764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=3.1e-29  Score=241.76  Aligned_cols=231  Identities=22%  Similarity=0.266  Sum_probs=188.5

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhhCCchhHH--HHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCC
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELR--EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY   98 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   98 (537)
                      ++|.||||+||..|+.++|+.|+......-+.  ..++.+|.+|+||||+|+..|+.++|++|+++|.  +++..+.+|.
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga--d~n~~~~~g~  108 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA--DPTIYNKSER  108 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccc--cccccccccc
Confidence            56999999999999999998887653211000  0145688999999999999999999999999874  4667889999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCh--hhhcCCCCCChHHHHHHhCCCH---HHHHHHHHcCCCc-------ccccccCCC
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPE--LLMTFDSSNTTALHTASSQGHV---EVVKFLLEKGSTL-------ATIARSNGK  166 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~-------~~~~~~~g~  166 (537)
                      |||+.|+..++.++++.+......  .....+..+.++.+.+...+..   ..+..+.+.....       ....+..|.
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            999999999999999988765432  2334577889999999887754   4455555443221       123456799


Q ss_pred             cHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcH
Q 009331          167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (537)
Q Consensus       167 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~  246 (537)
                      ||||.++..++.+++++++..........|..|+||||+|++.|+.+++++|++ .+.++|.+|.+|+||||+|+++|+.
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999988776666666779999999999999999999999999 5677999999999999999999999


Q ss_pred             HHHHHHhh
Q 009331          247 QIVQKLLN  254 (537)
Q Consensus       247 ~iv~~Ll~  254 (537)
                      +++++|++
T Consensus       268 ~iv~lL~~  275 (277)
T d2fo1e1         268 NIVDIFDR  275 (277)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-27  Score=230.64  Aligned_cols=236  Identities=25%  Similarity=0.324  Sum_probs=202.2

Q ss_pred             cCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCC
Q 009331           19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY   98 (537)
Q Consensus        19 ~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   98 (537)
                      .+..|.||||+|+..|+.++++.|++.+...      ...+..+.+|.+.|+..+..+.....+....  .....+..+.
T Consensus        35 ~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  106 (285)
T d1wdya_          35 EEEGGWTPLHNAVQMSREDIVELLLRHGADP------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGA--DVNECDFYGF  106 (285)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CTTCBCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHhhhhccccccc------cccccccchhhHHHhhcCCccccchhhhhcc--cccccccCCC
Confidence            3457999999999999999999999988653      4557788999999999999999999998753  2334577899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChh---------hhcCCCCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPEL---------LMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTA  168 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tp  168 (537)
                      ++++.|+..|+...++.++......         ....+..|.||||+|+..|+.+++++|+++ |.++ ...+..|.++
T Consensus       107 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~  185 (285)
T d1wdya_         107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNA  185 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCH
T ss_pred             chhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcc
Confidence            9999999999999999998865432         233467799999999999999999999986 5555 6677888888


Q ss_pred             HHHHHHC----CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331          169 LHSAARN----GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (537)
Q Consensus       169 L~~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~  244 (537)
                      ++.+...    +..+++++|+++++++. ..|..|.||||.|++.|+.+++++|++..+.++|.+|.+|+||||+|++.|
T Consensus       186 ~~~~~~~~~~~~~~~i~~~Li~~ga~~n-~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~  264 (285)
T d1wdya_         186 LIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccchHHHHHHHHHHHCCCCCC-ccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            8776543    34679999999999865 458899999999999999999999999888899999999999999999999


Q ss_pred             cHHHHHHHhhhcCCCcccccC
Q 009331          245 RVQIVQKLLNINGVDKAVINK  265 (537)
Q Consensus       245 ~~~iv~~Ll~~~g~~~~~~~~  265 (537)
                      +.+++++|++ .|+|+|++|.
T Consensus       265 ~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         265 LKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHHH-HSSCSCCSSC
T ss_pred             CHHHHHHHHH-CCCCCCcccC
Confidence            9999999999 7999999873

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-28  Score=225.41  Aligned_cols=220  Identities=24%  Similarity=0.326  Sum_probs=191.9

Q ss_pred             CCCCChHHHHHHcCCHHHHHHHHhh----CCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331           21 KRDDTPLQSLVRTGSVELVLDMISS----YGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (537)
Q Consensus        21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (537)
                      .+|.||||+||+.|+.++++.|++.    +.+      ++.+|..|.||||+|+..|+.++++.|++.+..  .+.....
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~--~~~~~~~   72 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS--PMALDRH   72 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCC------CCccCCCCCccceehhccccccccccccccccc--ccccccc
Confidence            3699999999999999999999863    333      466789999999999999999999999998744  4556778


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCChh---hhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Q 009331           97 GYDAFHIAAKQGCLEVLKILMEALPEL---LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA  173 (537)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  173 (537)
                      |.++++.|...++.++++.+.......   .........+||+.+.........+.|.....+.....+..|.+|++.|+
T Consensus        73 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  152 (228)
T d1k1aa_          73 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  152 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH
Confidence            999999999999999999888765432   23335677899999999999999999999888776677788999999999


Q ss_pred             HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHH
Q 009331          174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ  250 (537)
Q Consensus       174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~  250 (537)
                      ..+..++++.+++.+..... .|..|.||||+|+.+|+.+++++|++ .+.++|.+|.+|+||||+|+++|+.++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         153 ENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             Hhhhhhhhhhhhhhcccccc-ccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999877654 58899999999999999999999998 56779999999999999999999998875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-29  Score=232.04  Aligned_cols=163  Identities=23%  Similarity=0.259  Sum_probs=108.2

Q ss_pred             CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCC-----cccCCCCCChH
Q 009331          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-----VLRNDKKGQTA  202 (537)
Q Consensus       128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~t~  202 (537)
                      |.+|+||||+|+..|+.+++++|++.|+++ ...|.+|.|||+.|+..|+.++++.|++.+...     .......|.||
T Consensus        36 d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~  114 (221)
T d1iknd_          36 NNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC  114 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCH
T ss_pred             CCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccchh
Confidence            555555555555555555555555555554 344555556666666555555555555543221     22234456778


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhH
Q 009331          203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI  282 (537)
Q Consensus       203 Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i  282 (537)
                      ||.|+..++.+++++++..+.......+.+|+||||+|++.|+.+++++|++ +|+|++.+|.+|.||||+|+..++.++
T Consensus       115 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         115 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             hhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHH
Confidence            8888777777777777775444333344678888888888888888888887 678888888888888888888888888


Q ss_pred             HHHHHhcCCC
Q 009331          283 GVILKEHGVP  292 (537)
Q Consensus       283 ~~~L~~~ga~  292 (537)
                      +++|.+.+.+
T Consensus       194 ~~~l~~~~~~  203 (221)
T d1iknd_         194 QQQLGQLTLE  203 (221)
T ss_dssp             HHHHHTTSCG
T ss_pred             HHHHHHcCCc
Confidence            8888777654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-28  Score=229.05  Aligned_cols=192  Identities=28%  Similarity=0.287  Sum_probs=131.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhC--CcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331           61 SGETALYVAAEYGYVDMVREMIRYH--DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (537)
Q Consensus        61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (537)
                      +|+||||+|+..|+.++++.|++..  ...+++.+|.+|+||||+|+..|+.+++++|++.+++... .|..|.||||.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccc-cccccccccccc
Confidence            4667777777777654444333221  1234455666777777777777777777777777666543 366777777777


Q ss_pred             HhCCCHHHHHHHHHcCCCc-----ccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHH
Q 009331          139 SSQGHVEVVKFLLEKGSTL-----ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE  213 (537)
Q Consensus       139 ~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  213 (537)
                      +..|+.++++.|++.+...     ......+|.||||.|+..++.+++++|+..+.......+.+|.||||+|++.|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            7777777777777664332     12233456778888887778887777777777766666667788888888888888


Q ss_pred             HHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          214 LVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       214 ~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      ++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++
T Consensus       160 ~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         160 LVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            8888887 456678888888888888888888888887776

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=8.3e-27  Score=215.01  Aligned_cols=205  Identities=24%  Similarity=0.315  Sum_probs=113.4

Q ss_pred             HHHHHHHHhCCcccccc-cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcC
Q 009331           76 DMVREMIRYHDTSLAGI-KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG  154 (537)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  154 (537)
                      |+|++|+++|.  +.+. .|.+|.||||+||..|+.+++++|++.++.+... +..+.++++.++..++...........
T Consensus         3 ~~v~~Ll~~g~--din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQGA--ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ-DNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHCCC--CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccc-ccccccccccccccccccccccccccc
Confidence            45555555542  2222 2445555555555555555555555555444322 455555555555555555444444443


Q ss_pred             CCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 009331          155 STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN  234 (537)
Q Consensus       155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~  234 (537)
                      ..........|.++.+.+.........+.|.+.+.+... .+..|.|||+.++.++..++++.+++ .+..++..|.+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~  157 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA-ADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDE  157 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccc-cCCCCCCcchhhcccCcceeeeeecc-ccccccccccccc
Confidence            333333344455555555555555555555555544322 24556666666666666666666665 3344566666666


Q ss_pred             cHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHH
Q 009331          235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL  286 (537)
Q Consensus       235 T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L  286 (537)
                      ||||+|+..|+.+++++|++ .|+|++.+|..|.|||++|++.|+.+++++|
T Consensus       158 TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         158 TPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            66666666666666666665 5666666666666666666666666666654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.3e-26  Score=213.69  Aligned_cols=207  Identities=24%  Similarity=0.297  Sum_probs=183.7

Q ss_pred             HHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHH
Q 009331           36 VELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI  115 (537)
Q Consensus        36 ~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~  115 (537)
                      .|+|+.|+++|++.+.     ..|.+|.||||+||..|+.+++++|++.+.  ..+.++..+.++++.++..++......
T Consensus         2 ~~~v~~Ll~~g~din~-----~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~--~~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA-----TMDKTGETSLHLAARFARADAAKRLLDAGA--DANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHHHHCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCCcCc-----CcCCCCCCHHHHHHHcCCHHHHHHHHhhcc--ccccccccccccccccccccccccccc
Confidence            5899999999975422     257899999999999999999999999874  456678899999999999999998888


Q ss_pred             HHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccC
Q 009331          116 LMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN  195 (537)
Q Consensus       116 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~  195 (537)
                      ...............+.++.+.+.........+.|.+.+.++ ...+..|.|||+.++..+..++++.+++.+.+.. ..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~  152 (209)
T d1ot8a_          75 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQ  152 (209)
T ss_dssp             HHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccccc-cc
Confidence            777766666666778899999999999999999999999887 5678899999999999999999999999988865 45


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331          196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL  252 (537)
Q Consensus       196 d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  252 (537)
                      |..|.||||.|+..|+.+++++|++ .+.+++.+|.+|+||||+|+++|+.+++++|
T Consensus       153 d~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         153 DDKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            8899999999999999999999999 5667899999999999999999999999976

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=6.5e-27  Score=227.29  Aligned_cols=224  Identities=19%  Similarity=0.246  Sum_probs=184.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331           60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (537)
Q Consensus        60 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (537)
                      ..+.|||+.||+.|+.++|++|++.|.  +++..|.+|.||||+|+..|+.+++++|++++.+.... +..+.+||+.|+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Ga--dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~-~~~~~~~L~~a~  114 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAA  114 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCC--CCCccCCCCCcHHHHHHhcCCceeeeeecccccccccc-cccccccccccc
Confidence            345699999999999999999999884  46678999999999999999999999999999876544 778999999999


Q ss_pred             hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHH
Q 009331          140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (537)
Q Consensus       140 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  219 (537)
                      ..++.++++.|++++... ...+.++.+|+++|+..++.+.++.++.............+..+.        .......+
T Consensus       115 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~~  185 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWL  185 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHH
T ss_pred             cccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccc--------cccchhhh
Confidence            999999999999999876 567889999999999999999999998654332211111111111        11122222


Q ss_pred             hcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 009331          220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS  296 (537)
Q Consensus       220 ~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~  296 (537)
                      ..........+..|.||||+|+..|+.++++.|++ .|++++.++..|.||||+|+..|+.+++++|+++|+++...
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccccccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            22444556778899999999999999999999998 79999999999999999999999999999999999987654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=8.4e-29  Score=247.09  Aligned_cols=229  Identities=22%  Similarity=0.258  Sum_probs=104.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHH---HHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhc-CCCCCCh
Q 009331           58 MNQSGETALYVAAEYGYVDMVRE---MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMT-FDSSNTT  133 (537)
Q Consensus        58 ~~~~g~t~L~~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~-~d~~g~t  133 (537)
                      ++..|.||||+||++|+.+++++   |++.+  .+.+..+.+|+||||+||..|+.++|++|++.+++.... .+.+|.|
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            34455555555555555544443   33333  333444555555555555555555555555555543322 1234555


Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCCcc--cccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcc------cCCCCCChHHHH
Q 009331          134 ALHTASSQGHVEVVKFLLEKGSTLA--TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVL------RNDKKGQTALHM  205 (537)
Q Consensus       134 pLh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~------~~d~~g~t~Lh~  205 (537)
                      |||+|+..|+.++|++|++.|+...  ...+.+|.||++.|+.+|+.+++++|++.+++...      .....+.++++.
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHH
Confidence            5555555555555555555554331  12223344555555555555555555554432211      112223344554


Q ss_pred             HHhcCCHHHHHHHHhcCCc-ccccccC-------CCCcHHHHHHHhCcHHHHHHHhhhcCC----CcccccCCCCCHHHH
Q 009331          206 AVKGQSIELVDELVKVEPV-IINMVDA-------KGNSALHIATRKGRVQIVQKLLNINGV----DKAVINKSRETALDT  273 (537)
Q Consensus       206 A~~~~~~~~v~~Ll~~~~~-~~n~~d~-------~G~T~Lh~A~~~~~~~iv~~Ll~~~g~----~~~~~~~~g~t~L~~  273 (537)
                      +...+..+....+...... ..+..+.       .+.++|+.|+..+..+++++|++....    +.+..+.+|+||||+
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence            4444444433333321110 1111111       123455555555566666666553221    122233445566666


Q ss_pred             HHHcCChhHHHHHHh
Q 009331          274 AEKTGHSEIGVILKE  288 (537)
Q Consensus       274 A~~~~~~~i~~~L~~  288 (537)
                      |++.|+.+++++|++
T Consensus       324 A~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         324 ALRLGNQGACALLLS  338 (346)
T ss_dssp             HHHHTCTTHHHHHTT
T ss_pred             HHHcCcHHHHHHHhC
Confidence            666666666666554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=1.2e-27  Score=238.64  Aligned_cols=235  Identities=20%  Similarity=0.208  Sum_probs=172.5

Q ss_pred             hccCCCCCChHHHHHHcCCHHHHHHH--HhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccC
Q 009331           17 QLTAKRDDTPLQSLVRTGSVELVLDM--ISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA   94 (537)
Q Consensus        17 ~~~~~~~~t~Lh~A~~~g~~~~v~~L--l~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   94 (537)
                      ...+..|.||||+|+.+|+.++++.+  |...+     ..++.++.+|.||||+||+.|+.++|++|++.+.+......+
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~-----~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~  158 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSD-----EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ  158 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC-----SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC-----CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence            35567899999999999999999985  22222     346678888999999999999999999999988655444345


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCChhh--hcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccc------cccCCC
Q 009331           95 RNGYDAFHIAAKQGCLEVLKILMEALPELL--MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI------ARSNGK  166 (537)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~------~~~~g~  166 (537)
                      .+|+||||+|+..|+.+++++|++.++...  ...+.++.||++.|+..|+.+++++|++.|++....      .+..+.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV  238 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhh
Confidence            579999999999999999999999987542  223455778888999999999999999998765321      112233


Q ss_pred             cHHHHHHHCCcHHHHHHHHhcCCCCcc-cCCC-------CCChHHHHHHhcCCHHHHHHHHhcCCc----ccccccCCCC
Q 009331          167 TALHSAARNGHLEIVKALLSKEPGIVL-RNDK-------KGQTALHMAVKGQSIELVDELVKVEPV----IINMVDAKGN  234 (537)
Q Consensus       167 tpL~~A~~~g~~~iv~~Ll~~~~~~~~-~~d~-------~g~t~Lh~A~~~~~~~~v~~Ll~~~~~----~~n~~d~~G~  234 (537)
                      ++++.+...+..+....+.....+... ..+.       .+.++++.|+..+..+++++|++....    ..+..+.+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~  318 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCC
Confidence            555655555555544444433322211 1111       124688899999999999999985432    2344556899


Q ss_pred             cHHHHHHHhCcHHHHHHHhhhc
Q 009331          235 SALHIATRKGRVQIVQKLLNIN  256 (537)
Q Consensus       235 T~Lh~A~~~~~~~iv~~Ll~~~  256 (537)
                      ||||+|++.|+.+++++||+.+
T Consensus       319 T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         319 ELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTSH
T ss_pred             cHHHHHHHcCcHHHHHHHhCCC
Confidence            9999999999999999999843

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.7e-25  Score=193.42  Aligned_cols=152  Identities=27%  Similarity=0.387  Sum_probs=74.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      +|||.||..|+.++++.|+++++++.. .|..|.||||+|+ .|+.+++++|+++++++ ...+.+|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~-~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            445555555555555555555444322 2445555555443 34555555555555443 33444455555555555555


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +.++.|++.+.+.. ..|..|.+|||.|++.++.+++++|++..+.+.+.+|.+|.||||+|+..++.+++++|++
T Consensus        80 ~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          80 DTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            55555554444432 2244455555555555555555555554444445555555555555555555555555544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.4e-25  Score=192.12  Aligned_cols=154  Identities=25%  Similarity=0.397  Sum_probs=143.4

Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      +|||+||..|+.++|++|+++|+++ +..|.+|.||||+|+ .|+.+++++|++++++.. ..+..|.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccc-cccccCccccccccccccc
Confidence            8999999999999999999999997 678999999999886 789999999999998865 4478899999999999999


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331          213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  290 (537)
Q Consensus       213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g  290 (537)
                      +.++.+++ .+..++..|..|.+|||+|+..++.+++++|++..+.+.+.+|.+|.||||+|+..++.+++++|+++|
T Consensus        80 ~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999998 455678999999999999999999999999999777799999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.1e-24  Score=186.02  Aligned_cols=151  Identities=24%  Similarity=0.356  Sum_probs=95.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      +.|+.||..|+.+++++|++.+....+..|..|+||||+|+ .|+.+++++|++++.++ ...+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            34666666666666666666544434445666666666664 35666666666666665 44455666677777777776


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      ++++.++++++++.. .|..|.||||+|+..|+.+++++|+.  +.+++.+|.+|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~l~~~~~~n~-~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccccccccccccccc-ccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            776666666665433 35666666766666666666666653  34456666677777777777777777766665

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.5e-23  Score=182.98  Aligned_cols=149  Identities=28%  Similarity=0.381  Sum_probs=103.1

Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      ||||.|++.|+.++|++|+++|++..  .|..|.||||+|+..++.++++.++........ .+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            66777777777777777777766542  466677777777777777777666666555432 245566677777777777


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHH
Q 009331          213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL  286 (537)
Q Consensus       213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L  286 (537)
                      +.+++++. .+.+.+.+|.+|+||||+|+..|+.+++++|++ .|++++.+|.+|.|||++|+..|+.+++++|
T Consensus        81 ~~~~~l~~-~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccc-cCCccccccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            77777766 344566677777777777777777777777776 5777777777777777777777777777765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=183.61  Aligned_cols=152  Identities=25%  Similarity=0.324  Sum_probs=137.3

Q ss_pred             hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (537)
Q Consensus       133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (537)
                      ++|+.||..|+.++|+.|++.+....+..|..|.||||+|+ .|+.+++++|++.+.++.. .+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccc-cccccccccccccccccc
Confidence            46999999999999999999754334778999999999886 5889999999999988654 478899999999999999


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331          213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  289 (537)
Q Consensus       213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~  289 (537)
                      ++++++++ .+.++|.+|.+|+||||+|+..|+.+++++|+.  |++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~-~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccc-cccccccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999 456689999999999999999999999998874  789999999999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.6e-23  Score=181.53  Aligned_cols=148  Identities=26%  Similarity=0.326  Sum_probs=74.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (537)
                      ||||.||+.|+.++|+.||+++++..   .+..|+||||+|+..++.++++.++......... +..+.++++.++...+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCcccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            55555555555555555555543211   3455555555555555555555555544443222 3444455555555555


Q ss_pred             HHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHH
Q 009331          144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE  217 (537)
Q Consensus       144 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  217 (537)
                      .++++++++++.+. ...+.+|.||||+|+..|+.+++++|++.++++.. .|.+|.||||+|+.+|+.+++++
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcc-cCCCCCCHHHHHHHcCCHHHHHh
Confidence            55555555555443 33444555555555555555555555555444332 24445555555555555544443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.3e-23  Score=203.38  Aligned_cols=176  Identities=20%  Similarity=0.263  Sum_probs=121.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCH-------HHHHHHHHcCCCcccccccCCC
Q 009331           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV-------EVVKFLLEKGSTLATIARSNGK  166 (537)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~-------~iv~~Ll~~~~~~~~~~~~~g~  166 (537)
                      |.+|+||||+||..|+.+++++|++.++++.. .|..|+||||.||..++.       ++++++.+.    ....|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----LILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----GGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----hhhcccccC
Confidence            78899999999999999999999999987764 488899999999987652       444444332    245678899


Q ss_pred             cHHHHHHHCCc----HH--------HHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHh--cCCcccccccCC
Q 009331          167 TALHSAARNGH----LE--------IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAK  232 (537)
Q Consensus       167 tpL~~A~~~g~----~~--------iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~--~~~~~~n~~d~~  232 (537)
                      ||||.++..+.    ..        ++.++...+..........+.++++.+........+..+..  .....+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            99998875443    22        34555666655555555666677776665544443332211  012347899999


Q ss_pred             CCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHH
Q 009331          233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE  275 (537)
Q Consensus       233 G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~  275 (537)
                      |+||||+|+++|+.+++++|++ .|++++++|+.|.||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999 79999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=165.03  Aligned_cols=121  Identities=21%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331          131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ  210 (537)
Q Consensus       131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  210 (537)
                      +.++||+|+..|+.+++++|+++|+++ +..+.+|.||+|.|+ .|+.+++++|+++++++.......+.||||+|+++|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            345666666666666666666666665 455666666666543 566666666666666654432222335666666666


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331          211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN  254 (537)
Q Consensus       211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  254 (537)
                      +.+++++|++. +.+++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            66666666663 45566666677777777777777777766654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=7.5e-22  Score=192.49  Aligned_cols=177  Identities=16%  Similarity=0.194  Sum_probs=119.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCH---HHHHHHHHhCChhhhcCCCCCChHH
Q 009331           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCL---EVLKILMEALPELLMTFDSSNTTAL  135 (537)
Q Consensus        59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~---~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (537)
                      |..|+||||+||..|+.++|+.|++.|.  +.+.+|..|+||||.||..++.   +.+..|++.........|..|+|||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga--d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            7889999999999999999999999874  5667899999999999987752   2223333332333345588999999


Q ss_pred             HHHHhCCC----HH--------HHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHH-----HHHhcCCCCcccCCCC
Q 009331          136 HTASSQGH----VE--------VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK-----ALLSKEPGIVLRNDKK  198 (537)
Q Consensus       136 h~A~~~g~----~~--------iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~-----~Ll~~~~~~~~~~d~~  198 (537)
                      |.++..+.    ..        ++.+++..+..........+.++++.+........+.     .++...   .+.+|.+
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~  258 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSN  258 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT---TTCCCTT
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCC
Confidence            99886543    23        3445555555444444455566666555444333222     223322   2445899


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHH
Q 009331          199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIAT  241 (537)
Q Consensus       199 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~  241 (537)
                      |+||||+|+++|+.+++++|++ .+.+++.+|..|.||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999 57789999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-21  Score=164.36  Aligned_cols=118  Identities=21%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCC-ChHHHHHHhC
Q 009331           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN-TTALHTASSQ  141 (537)
Q Consensus        63 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~  141 (537)
                      .++||.|++.|+.++|++|++.|  .+++..+..|.||||+|+ .|+.+++++|++.++++... +..+ .||||+|+..
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDAARE   79 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcC--Cccccccccccccccccc-cccccccccccccccccccc-ccccccccccccccc
Confidence            34555555555555555555544  223444555555555442 45555555555555544333 2222 3455555555


Q ss_pred             CCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHH
Q 009331          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL  185 (537)
Q Consensus       142 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  185 (537)
                      |+.+++++|+++|+++ ...|.+|.||||+|+..|+.+++++|+
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5555555555555554 344555555555555555555555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.5e-21  Score=162.27  Aligned_cols=105  Identities=30%  Similarity=0.368  Sum_probs=76.7

Q ss_pred             cHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcH
Q 009331          167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (537)
Q Consensus       167 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~  246 (537)
                      |||++|++.|+.+++++|++++.++. ..|..|+||||+|+..|+.+++++|++ .+.++|.+|.+|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccc-ccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcCch
Confidence            56777777777777777777666643 336667777777777777777777776 4555677777888888888888888


Q ss_pred             HHHHHHhhhcCCCcccccCCCCCHHHHH
Q 009331          247 QIVQKLLNINGVDKAVINKSRETALDTA  274 (537)
Q Consensus       247 ~iv~~Ll~~~g~~~~~~~~~g~t~L~~A  274 (537)
                      +++++|++ .|+|++.+|.+|.||||+|
T Consensus        82 ~~v~~Ll~-~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLS-KGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHT-TCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhc-ccccceeeCCCCCCHHHHH
Confidence            88888887 5778888888888888776

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.2e-21  Score=161.36  Aligned_cols=107  Identities=28%  Similarity=0.300  Sum_probs=85.1

Q ss_pred             ChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCC
Q 009331          132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS  211 (537)
Q Consensus       132 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  211 (537)
                      .|||++|+..|+.+++++|+++|+++ ...+.+|.||||+|+..|+.+++++|+++++++.. .|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-CSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccceeee-cccccccchhhhhhcCc
Confidence            47888888888888888888888776 55677788888888888888888888888877543 47788888888888888


Q ss_pred             HHHHHHHHhcCCcccccccCCCCcHHHHHH
Q 009331          212 IELVDELVKVEPVIINMVDAKGNSALHIAT  241 (537)
Q Consensus       212 ~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~  241 (537)
                      .+++++|++ .+.+++.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLS-KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHT-TCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhc-ccccceeeCCCCCCHHHHHh
Confidence            888888887 45667888888888888873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2e-20  Score=158.21  Aligned_cols=121  Identities=27%  Similarity=0.318  Sum_probs=80.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC
Q 009331           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (537)
Q Consensus        64 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (537)
                      ++|+.|+..|+.++|+.|++.+.  +++.+|.+|+||||+|+..|+.+++++|++.+.+... .|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~--d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~-~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD--DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS--SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccccccc-ccccCcccccccchhhH
Confidence            46777777777777777777653  3455667777777777777777777777777665543 36677777777777777


Q ss_pred             HHHHHHHHHcCCCcccccccCCCcHHHHH--HHCCcHHHHHHHHhc
Q 009331          144 VEVVKFLLEKGSTLATIARSNGKTALHSA--ARNGHLEIVKALLSK  187 (537)
Q Consensus       144 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~  187 (537)
                      .+++++|+++|+++....+.+|.||++.+  +..|+.+++++|++.
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            77777777777766444344566665544  455667777766653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-20  Score=155.32  Aligned_cols=120  Identities=23%  Similarity=0.298  Sum_probs=68.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (537)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (537)
                      ++|+.|+..|+.+++++|++++.++. .+|.+|+||||+|+..|+.+++++|++.|++. +..|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc-cccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            45566666666666666666665543 23556666666666666666666666666554 44555666666666666666


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHH--HhcCCHHHHHHHHh
Q 009331          179 EIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDELVK  220 (537)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~  220 (537)
                      +++++|+++++++....+..|+|+++++  +++|+.+++++|+.
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            6666666665554433333455554443  34455555555554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.6e-19  Score=155.58  Aligned_cols=127  Identities=20%  Similarity=0.202  Sum_probs=75.9

Q ss_pred             hHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccccccCCCCChHHH
Q 009331           26 PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (537)
Q Consensus        26 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (537)
                      .|+.|++.+++..+..++..+.+...+......+..|+||||+|+..   |+.++|++|++.+.  +++.+|..|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga--din~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG--NLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS--CTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC--Chhhhhhhhccccc
Confidence            35677777777777777766644221111122345566666666653   45666666666653  34455666666666


Q ss_pred             HHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCC
Q 009331          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS  155 (537)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  155 (537)
                      +|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|++.+.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            66666666666666666665543 36666666666666666666666666543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1e-18  Score=151.76  Aligned_cols=122  Identities=24%  Similarity=0.289  Sum_probs=93.0

Q ss_pred             HHHHHHCCcHHHHHHHHhcCCCCcc-----cCCCCCChHHHHHHh---cCCHHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331          169 LHSAARNGHLEIVKALLSKEPGIVL-----RNDKKGQTALHMAVK---GQSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (537)
Q Consensus       169 L~~A~~~g~~~iv~~Ll~~~~~~~~-----~~d~~g~t~Lh~A~~---~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A  240 (537)
                      |..|++.++...+..++..+.+...     ..+..|+||||+|++   .+..+++++|++. +.++|.+|.+|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhccccccc
Confidence            3455566666666655555544322     225668888888886   3677888888884 556788888889999999


Q ss_pred             HHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331          241 TRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  292 (537)
Q Consensus       241 ~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~  292 (537)
                      +..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++++.
T Consensus        89 ~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          89 CLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            98888999988888 6888888888889999999888888888888887654