Citrus Sinensis ID: 009345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
Protein Sequence
MSSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSVSLIMYFLLIWPYYRTACYFSEI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHEEcccccEEEEEEEEcccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHEEEEEEEccccccccccccEEEEEccccEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccHHHHHHcccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEEEccHHHHcccccccccccccccccccccccEEEccccccccHHcccHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHccccccccccHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHEEccc
Coil and Loop (DISEMBL)
msssdspqsihfrckkpitakpkpemsnqnpnptqlasktpekqpsrrarNSRMALSLKEIRKAaqtnpqqppkdqiesagkqisaspsvkssvnpagsgspklpakYMQLAECFDSLDAVIRLLKLkcssptftsicpkiecltdrrfslghlaqlKFILPEVIQIKKVLtfdektscmkpdlhvtvnadaiecdgkskcnsknlnLRTVFRARLMDFlkdhpegdeipeetlpepfnrsrsdlqlnmvkkstsltpadsptdasveqqqvssptcqnskllnivkapsismvtgtsasasdnqqpivashfssrrhFSQKFVNSLAEKkkaerissgvsiepsttpalepclrKISSIEETCSTAAISAVElsskstskencltycasptrlsqscppvtpvkeidpmeskvsypikvdseqstpaklvstparlmigtpalhqpkrcymtpenvsasspnkltrrpphsrtlkslkfdtpvknatvehklnedisvdgdvldilpenlIQSVSLIMYFLLIWpyyrtacyfsei
Flexible Loop (DISEMBL)
msssdspqsihfrckkpitakpkpemsnqnpnptqlasktpekqpsrrarNSRMALSLKEIRkaaqtnpqqppkDQIESAGKQIsaspsvkssvnpaGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKcssptftsicPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAiecdgkskcnsknlnlRTVFRARLMDFLKDHPegdeipeetlpepfnrsrSDLQLNMVKKSTsltpadsptdaSVEQQqvssptcqnskllnIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAekkkaerissgvsiepsttpalepCLRKISSIEETCSTAAISAvelsskstskeNCLTYcasptrlsqscppvtpVKEIDPMESKVSypikvdseqstpaklvstparlmigtpalhqpkrcymtpenvsasspnkltrrpphsrtlkslkfdtpvknatvehklnedisvdgdVLDILPENLIQSVSLIMYFLLIWPYYRTACYFSEI
Low Complexity Region (SEG)
MSSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSVSLIMYFLLIWPYYRTACYFSEI
Disordered region (IsUnstruct)
**********************************************************************************************************KYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFL*******************************************************************************************************************************************************************CLTYCA***************************************************************************************************VEHKLNEDISVDGDVLDILPENLIQSVSLIMYFLLIWPYYRTACYF***
Disordered Region (DISOPRED)
***********************************************************************************************************YMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTF*****CMKPDLHVTV*******************LRTVFRARLMDFLKDHP*****************************************************************************************************************************************************************************************************************************************************************************************ILPENLIQSVSLIMYFLLIWPYYRTACYFSEI
Disordered Region (DISEMBL)
**********HFRCKKPITAKP******************************RMALSLKEIRKA**************************************KLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKS***********************CQNSKLLNIVKAPSISMV***********QPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMT*****************HSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSVSLIMYFLLIWPYYRTACYFSEI
Disordered Region (DISPRO)
**************************************************************************************************SGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTP****************************************************************************************************************************NCLTYCASPTRLSQSCPPVTPVK********VSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYM*************************LKFDTPVKN*********DISVDGDVLDILPENLIQSVSLIMYFLLIWPYYRTACYFSEI
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSVSLIMYFLLIWPYYRTACYFSEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	537	2.2.26 [Sep-21-2011]
Q9SJW9	571	CDT1-like protein a, chlo	yes	no	0.472	0.444	0.477	1e-46
Q9M1S9	486	CDT1-like protein b OS=Ar	no	no	0.294	0.325	0.502	3e-37
Q9H211	546	DNA replication factor Cd	yes	no	0.219	0.216	0.285	1e-07
Q8R4E9	557	DNA replication factor Cd	yes	no	0.322	0.310	0.247	2e-05

>sp|Q9SJW9|CDT1A_ARATH CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/266 (47%), Positives = 170/266 (63%), Gaps = 12/266 (4%)

Query: 1   MSSSDSPQSIHFRCKKPITAK-PKPEMSNQNPNPTQLASKTPEKQPSR---RARNSRMAL 56
           MS+  S +SI F+ KK +    P  +    NPNP+ +A  TPEK       R+RN  +AL
Sbjct: 1   MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVAL 60

Query: 57  SLKEIRKAAQTNPQQPPKDQIESAGK-----QISASPSVKSSVNPAGSGSPKLPAKYMQL 111
           S+KEIR+AA +  ++  +D + S+ K       S+S   K   +   +   KLP KY  L
Sbjct: 61  SVKEIRQAAGS--RRRSEDPVASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEKYENL 118

Query: 112 AECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVL 171
            + F++LD  + L KL+ S PTF++I  +IE LT+RRF   HLAQ+K ILPE I+IK+VL
Sbjct: 119 GKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVL 178

Query: 172 TFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPE 231
             DE T CMKPDLHVT+NADA+E + KSK  SK + LR VFRARL DF+K HP+GDE+PE
Sbjct: 179 IHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVPE 238

Query: 232 ETLPEPFNRSRSDLQLNM-VKKSTSL 256
           E LPEPFNR +     N+ VK+ +SL
Sbjct: 239 EPLPEPFNRRKPVENSNVEVKRVSSL 264

Member of the pre-replication complex. Component of the plastid division machinery. Promotes polyloidization and regulates endoreduplication. Involved in the coordination of cell and plastid division.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1S9|CDT1B_ARATH CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=2 SV=1

 Score =  157 bits (396), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 113/169 (66%), Gaps = 11/169 (6%)

Query: 77  IESAGKQI-SASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFT 135
           I++  +QI S+SP  +S +        KLP ++  L E F+ LD  IRLLKLK SS T+ 
Sbjct: 26  IKTVKRQIFSSSPKPESVI--------KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYA 77

Query: 136 SICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIEC 195
           +ICPKIE LT+R FS  HLAQ+K I PE I++K+VL F E T CMKP LH+ +N DAI  
Sbjct: 78  NICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVV 137

Query: 196 DGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSD 244
           +  + C +K + LR VF ++L+DF K HP+ DEIP+E LPEPFN  + D
Sbjct: 138 E-DTICGTKYMELRKVFHSKLVDFRKAHPK-DEIPKELLPEPFNSPQRD 184

Member of the pre-replication complex. Regulates endoreduplication. Involved in the coordination of cell and plastid division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9H211|CDT1_HUMAN DNA replication factor Cdt1 OS=Homo sapiens GN=CDT1 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F S+D ++ +L  +  +PTF  +   ++ +  RRF   ++ Q+K + P 
Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPA 245

Query: 164 VIQIKK---VLTFDEKTSCMKPDLHVTVN-ADAIECDGKSK--CNSKNLNLRTVFRARLM 217
             + ++   V TF + T   + D  +T+      E DG +     S+ L  R +F  +L+
Sbjct: 246 SYRFRQERSVPTFKDGTR--RSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLV 303

Query: 218 DFLKDH 223
           + +K+H
Sbjct: 304 EHVKEH 309

Cooperates with CDC6 to promote the loading of the mini-chromosome maintenance complex onto chromatin to form the pre-replication complex necessary to initiate DNA replication. Binds DNA in a sequence-, strand-, and conformation-independent manner. Potential oncogene.

Homo sapiens (taxid: 9606)

>sp|Q8R4E9|CDT1_MOUSE DNA replication factor Cdt1 OS=Mus musculus GN=Cdt1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 47  RRARNSRMALSLKEIRKAAQTNPQQP--PKDQIESAGKQISASPSVKSSVNPAGSGSPKL 104
           RRAR  ++    + +R   Q N  +P  P  ++ +    +  +P+ +     A  G P L
Sbjct: 140 RRAR--KLGAQARALRARVQENAVEPSTPDAKVPTEQPCVEKAPAYQRFHALAQPGLPGL 197

Query: 105 --PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILP 162
             P KY  L E F S+D ++ +L  +  + TF  +   ++ +  +RF   ++ Q+K + P
Sbjct: 198 VLPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYP 257

Query: 163 EVIQIKK---VLTFDEKTSCMKPDLHVTVN-ADAIECDGKSKCNSK-NLNLRTVFRARLM 217
              + ++   V TF  K S  + D  +T+      E  G ++  +   L  R VFR  L+
Sbjct: 258 TSYRFRQECNVPTF--KDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLV 315

Query: 218 DFLKDH 223
           + +K+ 
Sbjct: 316 ERVKEQ 321

Cooperates with CDC6 to promote the loading of the mini-chromosome maintenance complex onto chromatin to form the pre-replication complex necessary to initiate DNA replication. Binds DNA in a sequence-, strand-, and conformation-independent manner. Potential oncogene.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
225437846	646	PREDICTED: CDT1-like protein a, chloropl	0.785	0.653	0.462	1e-97
255583212	578	conserved hypothetical protein [Ricinus	0.832	0.773	0.467	2e-94
224085623	564	predicted protein [Populus trichocarpa]	0.750	0.714	0.424	9e-86
356536825	596	PREDICTED: CDT1-like protein a, chloropl	0.823	0.741	0.415	4e-74
449468538	599	PREDICTED: CDT1-like protein b-like [Cuc	0.795	0.712	0.384	3e-68
449496951	597	PREDICTED: CDT1-like protein b-like [Cuc	0.783	0.705	0.380	1e-65
297744124	618	unnamed protein product [Vitis vinifera]	0.456	0.396	0.530	3e-61
357164360	576	PREDICTED: CDT1-like protein a, chloropl	0.709	0.661	0.326	1e-49
224062155	376	predicted protein [Populus trichocarpa]	0.359	0.513	0.464	1e-48
356545849	427	PREDICTED: CDT1-like protein a, chloropl	0.655	0.824	0.372	5e-45

>gi|225437846|ref|XP_002263743.1| PREDICTED: CDT1-like protein a, chloroplastic-like [Vitis vinifera]

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 231/499 (46%), Positives = 293/499 (58%), Gaps = 77/499 (15%)

Query: 31  PNPTQLASKTPEK--QPSRRARNSRMALSLKEIRKAAQT--------NPQQPPKDQIESA 80
           P+    +SKTPEK   P RR RN  +ALS+KE+++ A T        + +  P     +A
Sbjct: 96  PDHDPWSSKTPEKPALPPRRGRNGSVALSIKEVKQMATTLTKSAPVQSARTAPVGSARTA 155

Query: 81  GKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPK 140
                ASPS + +VN     S KLP KY  LA+ FDSLD+ IRLL+LK S  TFT+ICPK
Sbjct: 156 SVDPVASPSRQKNVN----RSMKLPEKYEMLAQFFDSLDSSIRLLRLKGSMSTFTNICPK 211

Query: 141 IECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSK 200
           IECLTDRRFS G+LAQLK+ILPE I IKKVL  DE+TSCMKPDL +T++ D IE    SK
Sbjct: 212 IECLTDRRFSHGNLAQLKYILPEAIVIKKVLMLDERTSCMKPDLLITLDVDGIE---NSK 268

Query: 201 CNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPAD 260
             S N +LR +FRARL+DF K HPEGDEIPEETLPEPF++S+ DL  NM+K S S  PA+
Sbjct: 269 LESGNSHLRKIFRARLLDFAKAHPEGDEIPEETLPEPFSQSKQDLHSNMIKDSYSSLPAE 328

Query: 261 SPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSS--RRH 318
           +  D  +EQ Q                                     VASH S   +R 
Sbjct: 329 TSCDVLMEQPQA------------------------------------VASHLSRCFQRR 352

Query: 319 FSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKS 378
           FSQK      E + + +  +  S++ S  P  +P L K SS EE  +T A S V+ S   
Sbjct: 353 FSQKIS---GEAENSNKKPANFSLQLSDLPVQDPYLNKSSSNEEVVATVAPSPVKSS--- 406

Query: 379 TSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLM 438
                      SP  L  S PP TP+K+ D  +++    +K    Q TPAKL  +PARLM
Sbjct: 407 -----------SPAHLPLSHPPATPLKKTDSTDNQDFCSMKTPDIQVTPAKLAFSPARLM 455

Query: 439 IGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNE--D 496
             TP+L  PKRC M+P + S +SPNKL RRP  SR   SLKFDTPVK A ++ ++NE   
Sbjct: 456 TMTPSLQPPKRCLMSPHDDSTNSPNKLVRRPARSR---SLKFDTPVKGAEIKEEVNEKGS 512

Query: 497 ISVDGDVLDILPENLIQSV 515
           +SVD D+LDILPENL++S+
Sbjct: 513 LSVDNDILDILPENLLESI 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583212|ref|XP_002532371.1| conserved hypothetical protein [Ricinus communis] gi|223527927|gb|EEF30014.1| conserved hypothetical protein [Ricinus communis]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 248/531 (46%), Positives = 306/531 (57%), Gaps = 84/531 (15%)

Query: 1   MSSSDSPQSIHFRCKKPI-TAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLK 59
           MSSS S   I ++ KKP+ +A PK +    NP  TQ   K P + PSRR RN  +ALSLK
Sbjct: 1   MSSSRS-SPIPYKSKKPLKSATPKSKSKLSNPIATQTPDKQPAELPSRRLRNRGVALSLK 59

Query: 60  EIRKAAQTNP---QQPPKDQIESAGKQISASPSVKSSVNPAGSGSP--KLPAKYMQLAEC 114
           E+RK AQ N    +      ++SA +QIS  P  +S+     +  P  K+P  Y  L+E 
Sbjct: 60  EVRKIAQGNADINKGGGVHIVKSARRQISTWPE-ESTGGEKSNKQPEEKIPEGYEILSEF 118

Query: 115 FDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFD 174
           FD LD+ IRL++LK S PT T+I PKIECLTDRRF  GHLAQ+K+ILPE I+I +VL FD
Sbjct: 119 FDCLDSTIRLMRLKGSMPTLTNISPKIECLTDRRFDHGHLAQMKYILPEAIEITRVLVFD 178

Query: 175 EKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETL 234
           E++SCMKPDLHV++N DAIECD   K  SKNL+LR VFRARL DF K HPEGDEIP+E L
Sbjct: 179 ERSSCMKPDLHVSLNVDAIECDVNLKSESKNLHLRKVFRARLEDFYKAHPEGDEIPKELL 238

Query: 235 PEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMV 294
           PEPFNRS+ DL     K STSL+                           I++ P+    
Sbjct: 239 PEPFNRSKLDLSSGTTKPSTSLS---------------------------IIETPA---- 267

Query: 295 TGTSASASDNQQPIVASHFSSR--RHFSQKFVNSLAEKKKAERISSG---VSIEPSTTPA 349
            GT  + S  Q P+ ASHFS    R FSQK  N+     + E    G   V  + S    
Sbjct: 268 -GTQMAKS--QLPVAASHFSKSFTRRFSQKLTNT-----EVEITCQGYPTVCSQQSVFSV 319

Query: 350 LEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDP 409
            EP L  +SS EET S+A           T   NC    A  TR        TP K+ID 
Sbjct: 320 PEPFLDIVSSNEETSSSAP----------TDSNNC---SADVTR--------TPSKKIDS 358

Query: 410 MESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRP 469
             S    P KV S QSTPAKL  TPA+LM  TPALH PKRCYM+P++ S S  NKL RRP
Sbjct: 359 T-SDGGSPTKVASFQSTPAKLALTPAKLMSATPALHPPKRCYMSPDDDSTSLANKLVRRP 417

Query: 470 PHSRTLKSLKFDTPVKNATVEHKL-----NEDISVDGDVLDILPENLIQSV 515
             +R   SLKF++P+KN  VE +L     +     DGD+L ILPE+L+QS+
Sbjct: 418 VRTR---SLKFESPLKN--VEDELIDDSGDASGDDDGDILKILPESLLQSI 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085623|ref|XP_002307639.1| predicted protein [Populus trichocarpa] gi|222857088|gb|EEE94635.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 212/500 (42%), Positives = 284/500 (56%), Gaps = 97/500 (19%)

Query: 31  PNPTQLASKTPEKQ---PSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISAS 87
           P+ + +A++TP +Q   PSR  RN R+ALSLKE+R  A    Q    +Q +SA +QI++ 
Sbjct: 32  PSNSTIATQTPTQQSQLPSR-LRNRRVALSLKEVRHIAS---QDHGTNQTKSARRQIASW 87

Query: 88  PSV-----------KSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTS 136
           P             K   N +  G  K+P KY  L E FD+LD+ IRLL++K S  TF++
Sbjct: 88  PEDSTTDTTTSKLPKPRKNQSRDGHNKIPDKYEMLGEFFDNLDSSIRLLRMKGSMSTFSN 147

Query: 137 ICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIEC- 195
           I PKIE LTDRRF+  HLAQLK+I+PE I+IK+VL FDE+TSCMKPDL VTVNADAI+C 
Sbjct: 148 ISPKIESLTDRRFTHKHLAQLKYIMPEAIEIKRVLKFDEQTSCMKPDLQVTVNADAIQCD 207

Query: 196 DGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTS 255
           DGK K  S+ + LR VFR+RL+DF +DHP+GD+IPEE LPEPFNRS              
Sbjct: 208 DGKLKTESEKIYLRKVFRSRLVDFYRDHPQGDDIPEEMLPEPFNRS-------------- 253

Query: 256 LTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSS 315
                                                ++ GT   A + ++P +AS  S 
Sbjct: 254 ------------------------------------PLLAGT--PAIEEEKPAMASLLS- 274

Query: 316 RRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELS 375
            R F ++F +     +K  +I +  S++ S + ALEPC  KISS E T S +A S  ++S
Sbjct: 275 -RSFKRRFSS-----QKGTKIEAENSLQRSVSSALEPCPSKISSNERT-SYSAPSPAKVS 327

Query: 376 SKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPA 435
           S  T  ++CL+               TP K  D +      P K+ S+QSTPAKL  TP 
Sbjct: 328 STPTCDQDCLS--------------ATPSKVKDAINDGDDSPTKMASDQSTPAKLALTPV 373

Query: 436 RLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNE 495
            L+  TPALHQ KRC     + S++SP+KL RRPP     +SL F+TPVK+A  E +   
Sbjct: 374 ALISTTPALHQHKRCTSPYNDGSSNSPDKLVRRPPS----RSLIFETPVKHAMDEQRETG 429

Query: 496 DISVDGDVLDILPENLIQSV 515
           D+S D DVL I PE+L+QS+
Sbjct: 430 DVSDDDDVLKIFPESLLQSI 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536825|ref|XP_003536934.1| PREDICTED: CDT1-like protein a, chloroplastic-like [Glycine max]

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 209/503 (41%), Positives = 275/503 (54%), Gaps = 61/503 (12%)

Query: 28  NQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQ----------PPKDQI 77
           +Q P+P Q +SKTPEK P +R RN  +ALS+ +IRKAA    Q           P    +
Sbjct: 27  SQPPSPVQFSSKTPEK-PPQRIRNRGVALSVADIRKAACKRLQDQKQCTEMTSAPSSSSL 85

Query: 78  -ESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTS 136
            +S  +QIS  PS  S        S KLP KY  L E FD LD ++ L +LK  +PTFTS
Sbjct: 86  NKSVRRQISLWPSSPSKPKTTDDESNKLPEKYEILDEFFDRLDTLVSLHRLKRWTPTFTS 145

Query: 137 ICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIEC- 195
           I  +IE LTDRRF+  HLAQLKFILP  I +KK L  DE+TSCMKPD+H++++ DA+E  
Sbjct: 146 ISSRIESLTDRRFTHSHLAQLKFILPNAIVLKKHLVLDERTSCMKPDIHISLDPDAVEAD 205

Query: 196 DGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKS-- 253
           D K       ++L+ VFRARL DF + HPEGDEIPE TLPEPFNR + D  L+M++    
Sbjct: 206 DAKLPPQRGRVSLKKVFRARLRDFCESHPEGDEIPEGTLPEPFNRPKKDSVLDMLETRLP 265

Query: 254 TSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHF 313
           T L P    +D              N++  N+ +   +S++  TS    +        H 
Sbjct: 266 TKLPPCMRYSD-----------IVNNAESANLDE--KLSVLVNTSVELPNE-------HL 305

Query: 314 SSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVE 373
           ++  H S  F     +K     +     ++P   P  E    + +   +T S    S  +
Sbjct: 306 AAPSHMSPSFRADDVQKNPLLDL-----LQPLAFPVSESSRNENTPFVDTESHLKTSPAK 360

Query: 374 LSSKSTSKENCLTYCASPTRLSQSCP-PVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVS 432
           L+S+++S E+CLT CA    L  SC  P TP K  +  E+K      +D+  STPAKLVS
Sbjct: 361 LASEASSSESCLTICAP---LESSCAHPATPSKTTEYTENKDGSLKSIDA-MSTPAKLVS 416

Query: 433 TPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHK 492
           TP RLM  TPAL  PKR YM+P++ S SS NKL RRPP SR   SLKFDTPVKN      
Sbjct: 417 TPIRLMSATPALRSPKRHYMSPDDHSISSLNKLARRPPRSR---SLKFDTPVKNK----- 468

Query: 493 LNEDISVDGDVLDILPENLIQSV 515
                    D+ D L E+ IQS+
Sbjct: 469 --------DDIFDTLQESTIQSI 483

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468538|ref|XP_004151978.1| PREDICTED: CDT1-like protein b-like [Cucumis sativus]

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 196/510 (38%), Positives = 276/510 (54%), Gaps = 83/510 (16%)

Query: 32  NPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQ--------------TNPQQPPKDQI 77
           +P  L+S+TPEK P  R R  ++ALS+KE+++AAQ              T   +  + Q+
Sbjct: 33  DPQSLSSRTPEK-PVERNRKRKVALSIKEVKQAAQSVHESNRQLHHDLTTRGSKLVRRQM 91

Query: 78  ESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSI 137
           +S   +  +S S K+ V+   + S KLP K+  L + FD LD+ +RLL+ K  +  F+S+
Sbjct: 92  DSWSNESQSSRS-KTCVD---NKSNKLPEKFELLCKFFDCLDSAMRLLRFKGVASNFSSV 147

Query: 138 CPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDG 197
           C KIE LTDRRFS  HLAQLKFILPE I +KKV+ FDE+TSCMKPDLH++ N   +E   
Sbjct: 148 CTKIEVLTDRRFSYSHLAQLKFILPEAIMLKKVVVFDERTSCMKPDLHISFNFGVLESK- 206

Query: 198 KSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN-RSRSDLQLNMVKKSTSL 256
                 + + LR +FR RL +F+  HPE D+IP+++LP PFN RS     LN+  ++ SL
Sbjct: 207 ----EDQYMQLRKLFRTRLSEFVSSHPEIDDIPKDSLPNPFNFRS-----LNLFPETNSL 257

Query: 257 TPADSPTDASVEQQQV-------SSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIV 309
           +   +  +    +Q +       S+   +N++   I+K+      T T    +  ++   
Sbjct: 258 SSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS------TMTGHGPNKQKELFG 311

Query: 310 ASHFS-SRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAA 368
            SHFS   R FSQK VN                I+  T  A               ST  
Sbjct: 312 LSHFSPVSRLFSQKAVN----------------IDVQTFDA--------------SSTKP 341

Query: 369 ISAVELSSKSTSKENCLTYCASPTRLSQSCP-PVTP--VKEIDPMESKVSYPIKVDSEQS 425
            S ++LSS STS  +CL   ASP   S S P P TP  +  I  M  +     KV+   S
Sbjct: 342 SSPIKLSSNSTSNLHCLENYASPI-CSLSLPNPTTPSNMVGIVTMRKEDGQSAKVNDIDS 400

Query: 426 TPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVK 485
           TP K VST  +LM  TPA+  PKR  MTP++  + S NKL RRPP SR   SL FDTP K
Sbjct: 401 TPVKFVSTSDQLMASTPAMAPPKRSSMTPDDDFSYSTNKLVRRPPRSR---SLVFDTPTK 457

Query: 486 NATVEHKLNEDISVDGDVLDILPENLIQSV 515
               + ++  D+S+D D+LD+L E+L+QS+
Sbjct: 458 EDKNKDEI--DVSLDNDILDVLSESLVQSI 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496951|ref|XP_004160272.1| PREDICTED: CDT1-like protein b-like [Cucumis sativus]

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 192/504 (38%), Positives = 269/504 (53%), Gaps = 83/504 (16%)

Query: 32  NPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQ--------------TNPQQPPKDQI 77
           +P  L+S+TPEK P  R R  ++ALS+KE+++AAQ              T   +  + Q+
Sbjct: 33  DPQSLSSRTPEK-PVERNRKRKVALSIKEVKQAAQSVHESNRQLHHDLTTRGSKLVRRQM 91

Query: 78  ESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSI 137
           +S   +  +S S K+ V+   +   KLP K+  L + FD LD+ +RLL+ K  +  F+S+
Sbjct: 92  DSWSNESQSSRS-KTCVDNKFN---KLPEKFELLCKFFDCLDSAMRLLRFKGVASNFSSV 147

Query: 138 CPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDG 197
           C KIE LTDRRFS  HLAQLKFILPE I +KKV+ FDE+TSCMKPDLH++ N   +E   
Sbjct: 148 CTKIEVLTDRRFSYSHLAQLKFILPEAIMLKKVVVFDERTSCMKPDLHISFNFGVLESK- 206

Query: 198 KSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN-RSRSDLQLNMVKKSTSL 256
                 + + LR +FR RL +F+  HPE D+IP+++LP PFN RS     LN+  ++ SL
Sbjct: 207 ----EDQYMQLRKLFRTRLSEFVSSHPEIDDIPKDSLPNPFNFRS-----LNLFPETNSL 257

Query: 257 TPADSPTDASVEQQQV-------SSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIV 309
           +   +  +    +Q +       S+   +N++   I+K+      T T    +  ++   
Sbjct: 258 SSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS------TMTGHGPNKQKELFG 311

Query: 310 ASHFS-SRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAA 368
            SHFS   R FSQK VN                I+  T  A               ST  
Sbjct: 312 LSHFSPVSRLFSQKAVN----------------IDVQTFDA--------------SSTKP 341

Query: 369 ISAVELSSKSTSKENCLTYCASPTRLSQSCP-PVTP--VKEIDPMESKVSYPIKVDSEQS 425
            S ++LSS STS  +CL   ASP   S S P P TP  +  I  M  +     KV+   S
Sbjct: 342 SSPIKLSSNSTSNLHCLENYASPI-CSSSLPNPTTPSNIVGIVTMRKEDGQSAKVNDIDS 400

Query: 426 TPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVK 485
           TP K VST  +LM  TPA+  PKR  MTP++  + S NKL RRPP SR   SL FDTP K
Sbjct: 401 TPVKFVSTSDQLMASTPAMAPPKRSSMTPDDDFSYSTNKLVRRPPRSR---SLVFDTPTK 457

Query: 486 NATVEHKLNEDISVDGDVLDILPE 509
               + ++  D+S+D D+LD+L E
Sbjct: 458 EDKNKDEI--DVSLDNDILDVLSE 479

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744124|emb|CBI37094.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/262 (53%), Positives = 173/262 (66%), Gaps = 17/262 (6%)

Query: 31  PNPTQLASKTPEK--QPSRRARNSRMALSLKEIRKAAQT--------NPQQPPKDQIESA 80
           P+    +SKTPEK   P RR RN  +ALS+KE+++ A T        + +  P     +A
Sbjct: 103 PDHDPWSSKTPEKPALPPRRGRNGSVALSIKEVKQMATTLTKSAPVQSARTAPVGSARTA 162

Query: 81  GKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPK 140
                ASPS + +VN     S KLP KY  LA+ FDSLD+ IRLL+LK S  TFT+ICPK
Sbjct: 163 SVDPVASPSRQKNVN----RSMKLPEKYEMLAQFFDSLDSSIRLLRLKGSMSTFTNICPK 218

Query: 141 IECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSK 200
           IECLTDRRFS G+LAQLK+ILPE I IKKVL  DE+TSCMKPDL +T++ D IE    SK
Sbjct: 219 IECLTDRRFSHGNLAQLKYILPEAIVIKKVLMLDERTSCMKPDLLITLDVDGIE---NSK 275

Query: 201 CNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPAD 260
             S N +LR +FRARL+DF K HPEGDEIPEETLPEPF++S+ DL  NM+K S S  PA+
Sbjct: 276 LESGNSHLRKIFRARLLDFAKAHPEGDEIPEETLPEPFSQSKQDLHSNMIKDSYSSLPAE 335

Query: 261 SPTDASVEQQQVSSPTCQNSKL 282
           +  D +    Q+S    Q+  L
Sbjct: 336 TSCDPANFSLQLSDLPVQDPYL 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164360|ref|XP_003580028.1| PREDICTED: CDT1-like protein a, chloroplastic-like [Brachypodium distachyon]

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 163/499 (32%), Positives = 235/499 (47%), Gaps = 118/499 (23%)

Query: 40  TPEK-QPSRRARNSRMALSLKEIRKA------AQTNPQQPPK-DQIESAGKQISASPSVK 91
           TPEK + +RRARN  +ALS+KE+R+A      A+  P +  + D +ES  +++       
Sbjct: 58  TPEKVESTRRARNGTVALSVKEVRRAALGLRRAEKGPAEAAQEDPLESVERELGVG---- 113

Query: 92  SSVNPAGSG-SP-------KLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIEC 143
                AG+G SP       KLP  Y  L E F+  ++  RLL++K S  TF +IC  I+ 
Sbjct: 114 -----AGAGRSPVKRKPEVKLPESYEMLCEFFNCFESSTRLLRMKGSKATFPNICASIQN 168

Query: 144 LTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNS 203
           L++RRF+ G+LAQLK+I+PE I I K+L  DEKT CMKPDL V +  DAIE     K  +
Sbjct: 169 LSERRFTYGNLAQLKYIMPEAIVINKILLRDEKTCCMKPDLQVNLLVDAIEGCATQKGET 228

Query: 204 KNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPT 263
           +   LR +FR RL+DF + HPEGD+IPE  LP PF R++S      V + +   P  +P 
Sbjct: 229 QYSALRRIFRQRLVDFFRSHPEGDDIPEHELPHPFTRTKSS-----VAQFSPRVPQVAPA 283

Query: 264 DASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSS--RRHFSQ 321
                                 V +P ++            QQP++ SH S   +R FSQ
Sbjct: 284 ----------------------VPSPCLA-----------EQQPVMMSHMSHSFKRRFSQ 310

Query: 322 KFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSK 381
           +                      ST PA       ++ +E T + + +S   L S   S 
Sbjct: 311 R---------------------SSTCPATASGTSPVAKVEPTTTQSPLSRKSLLS---SD 346

Query: 382 ENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGT 441
              + + A              V+E    +      +K    + TPAK  STP RLM  T
Sbjct: 347 SGGIDHEAQ-------------VQE----KGGNDVALKFGVSEGTPAKFASTPVRLMAAT 389

Query: 442 PALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISV-- 499
           P LH PKR       V  + P  + +R   ++      F TP KNA+   + N+  S   
Sbjct: 390 PGLHTPKRPISA--TVCDTPPLTMAKRSARAKL-----FMTPTKNASSMEEKNQSTSTSA 442

Query: 500 ---DGDVLDILPENLIQSV 515
              D ++L  LP++L+QSV
Sbjct: 443 IDDDDELLSFLPKSLLQSV 461

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062155|ref|XP_002300782.1| predicted protein [Populus trichocarpa] gi|222842508|gb|EEE80055.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/252 (46%), Positives = 150/252 (59%), Gaps = 59/252 (23%)

Query: 111 LAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKV 170
           L E FD+LD+ IRLL++K S  TF++I PKIE LTDRRF+  HLAQLK+I+PE I+IK+V
Sbjct: 2   LGELFDNLDSSIRLLRMKGSMSTFSNISPKIESLTDRRFTHKHLAQLKYIMPEAIEIKRV 61

Query: 171 LTFDEKTSCMKPDLHVTVNADAIEC-DGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEI 229
           L F+E+TSCMKP+LHVTVNADAIEC DGK K  SKN+ LR VFR+RL DF +DHP+GD+I
Sbjct: 62  LRFNEQTSCMKPELHVTVNADAIECDDGKLKSESKNIYLRKVFRSRLADFYRDHPQGDDI 121

Query: 230 PEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAP 289
           PEE LPEPFNR      L+++K++T                                   
Sbjct: 122 PEEMLPEPFNR------LSLLKETT----------------------------------- 140

Query: 290 SISMVTGTSASASDNQQPIVASHF--SSRRHFSQKFVNSLAEKKKAERISSGVSIEP--- 344
                      A + +QPIVAS    S +R FSQK  +S  +    +   + ++  P   
Sbjct: 141 -----------AVEEEQPIVASLLPQSFQRRFSQKVFDSPIKMASVQSTPAKLASTPATL 189

Query: 345 -STTPALEPCLR 355
            STTPAL P  R
Sbjct: 190 ISTTPALHPHKR 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545849|ref|XP_003541346.1| PREDICTED: CDT1-like protein a, chloroplastic-like [Glycine max]

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 207/405 (51%), Gaps = 53/405 (13%)

Query: 28  NQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIE--------- 78
           +Q P+  + +SKTPEK P +R RN  +ALS+ +IRKAA    Q    DQ +         
Sbjct: 27  SQPPSHVEFSSKTPEK-PPQRIRNRGVALSVADIRKAACKRLQ----DQKQCTETTSSSL 81

Query: 79  --------SAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCS 130
                   S  +QIS  PS  S        S  LP KY  L E F+ LD ++ L +LK  
Sbjct: 82  SSSSSLSKSVRRQISLGPSSPSKPMATEDESSNLPEKYEILDEFFNRLDTLVSLHRLKRW 141

Query: 131 SPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNA 190
           +PTFTSI  +IE LTDRRF+  HLAQLKFIL + I ++K L  DE+TSCMKPD+H++++ 
Sbjct: 142 TPTFTSISSRIESLTDRRFTHSHLAQLKFILRKAIVLRKHLVLDERTSCMKPDIHISLDP 201

Query: 191 DAIECDG-KSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNM 249
           DA+E D  K       ++L+ VFRARL +F + HPEGDEIPE TLPEPFNR + D  ++M
Sbjct: 202 DAVEADAAKLPPQGGRVSLKKVFRARLKEFWESHPEGDEIPEGTLPEPFNRQKKDSVVDM 261

Query: 250 VKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIV 309
           ++     TP   PT           P  + S ++N         V   +     N+    
Sbjct: 262 LE-----TPL--PTKLP--------PCMRYSDIVNNADLDEKLYVPVNATVEFPNEHLAA 306

Query: 310 ASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAI 369
            SH +          N L +           S++P   P  E   ++   + +T S    
Sbjct: 307 PSHMAPSFRADDVQQNPLLD-----------SLQPLAFPVSESSQKENPPLVDTESHLKT 355

Query: 370 SAVELSSKSTSKENCLTYCASPTRLSQSCP-PVTPVKEIDPMESK 413
           S  + SS+++S E+CLT CAS   L  S P P TP K I+  E K
Sbjct: 356 SPAKFSSEASSSESCLTICAS---LESSSPHPATPSKTIEYTEKK 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
TAIR|locus:2042541	571	CDT1A "homolog of yeast CDT1 A	0.713	0.670	0.394	4.2e-56
TAIR|locus:2102460	486	CDT1B "homolog of yeast CDT1 B	0.299	0.331	0.5	7.7e-48
RGD|1309211	556	Cdt1 "chromatin licensing and	0.484	0.467	0.238	5.8e-09
UNIPROTKB|Q9H211	546	CDT1 "DNA replication factor C	0.560	0.551	0.221	5.3e-07
UNIPROTKB|F1S6K4	551	CDT1 "Uncharacterized protein"	0.407	0.397	0.246	1.1e-06
UNIPROTKB|F1MCJ1	572	CDT1 "Uncharacterized protein"	0.551	0.517	0.227	2.6e-06
MGI|MGI:1914427	557	Cdt1 "chromatin licensing and	0.543	0.524	0.218	6.8e-06
ZFIN|ZDB-GENE-070111-1	678	cdt1 "chromatin licensing and	0.355	0.281	0.251	2.5e-05
UNIPROTKB|I3L5Z3	1383	PRG4 "Uncharacterized protein"	0.445	0.172	0.225	0.00015
POMBASE|SPAPB15E9.01c	1036	SPAPB15E9.01c "sequence orphan	0.504	0.261	0.227	0.00024

TAIR|locus:2042541 CDT1A "homolog of yeast CDT1 A" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 165/418 (39%), Positives = 232/418 (55%)

Query:     1 MSSSDSPQSIHFRCKKPITA-KPKPEMSNQNPNPTQLASKTPEKQPSR---RARNSRMAL 56
             MS+  S +SI F+ KK +    P  +    NPNP+ +A  TPEK       R+RN  +AL
Sbjct:     1 MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVAL 60

Query:    57 SLKEIRKAAQTNPQQPPKDQIESAGKQ------ISASPSVKSSVNPAGSGSPKLPAKYMQ 110
             S+KEIR+AA +  +   +D + S+ K        S+SPS + S N   +   KLP KY  
Sbjct:    61 SVKEIRQAAGSRRRS--EDPVASSAKSRLFFDSSSSSPSKRKSSNK-NAEKEKLPEKYEN 117

Query:   111 LAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKV 170
             L + F++LD  + L KL+ S PTF++I  +IE LT+RRF   HLAQ+K ILPE I+IK+V
Sbjct:   118 LGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRV 177

Query:   171 LTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIP 230
             L  DE T CMKPDLHVT+NADA+E + KSK  SK + LR VFRARL DF+K HP+GDE+P
Sbjct:   178 LIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVP 237

Query:   231 EETLPEPFNRSRSDLQLNM-VKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAP 289
             EE LPEPFNR +     N+ VK+ +SL    +   AS   +  SSP          VK  
Sbjct:   238 EEPLPEPFNRRKPVENSNVEVKRVSSLMEEMASIPAS---KLFSSPITSTP-----VKTT 289

Query:   290 SISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPA 349
             S S+   TS+  +    P   +   +++  S+  +N L    K   +S+     PST PA
Sbjct:   290 S-SLAKPTSSQINIAPTPTKPTSTPAKQTLSE--INILPTPVKP--VSTLAKF-PST-PA 342

Query:   350 LEPCLRKISSIE-ETCSTAA-ISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVK 405
             +      I++   E  ST A + +  L+++   + N  T   +P  +S   PP   V+
Sbjct:   343 IIDSTPVITATPPEFASTPARLMSTSLAARPLKRSNGHT---NPDDISAD-PPTKLVR 396

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0006260 "DNA replication" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

GO:0048229 "gametophyte development" evidence=IMP

GO:0051276 "chromosome organization" evidence=IMP

GO:0070182 "DNA polymerase binding" evidence=IPI

TAIR|locus:2102460 CDT1B "homolog of yeast CDT1 B homolog of yeast CDT1 B" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 86/172 (50%), Positives = 114/172 (66%)

Query:    74 KDQIESAGKQI-SASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSP 132
             K  I++  +QI S+SP  +S +        KLP ++  L E F+ LD  IRLLKLK SS 
Sbjct:    23 KTPIKTVKRQIFSSSPKPESVI--------KLPERFEILEEFFNGLDTAIRLLKLKGSST 74

Query:   133 TFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADA 192
             T+ +ICPKIE LT+R FS  HLAQ+K I PE I++K+VL F E T CMKP LH+ +N DA
Sbjct:    75 TYANICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLKFVEDTCCMKPRLHIKLNTDA 134

Query:   193 IECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSD 244
             I  +  + C +K + LR VF ++L+DF K HP+ DEIP+E LPEPFN  + D
Sbjct:   135 IVVED-TICGTKYMELRKVFHSKLVDFRKAHPK-DEIPKELLPEPFNSPQRD 184

GO:0005634 "nucleus" evidence=ISM

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0006260 "DNA replication" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048229 "gametophyte development" evidence=IMP

GO:0051276 "chromosome organization" evidence=IMP

GO:0070182 "DNA polymerase binding" evidence=IPI

RGD|1309211 Cdt1 "chromatin licensing and DNA replication factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 67/281 (23%), Positives = 123/281 (43%)

Query:     2 SSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSR-MALSLKE 60
             SSS  P  +   C  P+  + K    ++ P  +++ S+    +     R +R +    + 
Sbjct:    95 SSSVCPSPV---CPSPVK-RTKSTTVSRGPQQSKVPSQDSISELQSCLRQARKLGAQARA 150

Query:    61 IRKAAQTNPQQPPKDQIESAGKQ--ISASPSVKSSVNPAGSGSPKL--PAKYMQLAECFD 116
             +R   Q N  +P     +   +Q  +  +P+ +     A  G P L  P KY  LAE F 
Sbjct:   151 LRARVQENVVEPSTPDTKEPTEQPCVDKAPAYQRFHALAQPGLPGLVLPYKYQVLAEMFR 210

Query:   117 SLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTF 173
             S+D ++ +L  +  + TF  +   ++ +  +RF   ++ Q+K + PE    ++   V TF
Sbjct:   211 SMDTIVSMLHNRSETVTFAKVKQGVQEMIRKRFEERNMGQIKTVYPESYSFRQECNVPTF 270

Query:   174 DEKTSCMKPDLHVTVNAD-AIECDGKSKCNSKNL-NLRTVFRARLMDFLKDHPE---GDE 228
               K S  + D  +T+      E  G ++  +  L   R VFR  L++ +K+H +      
Sbjct:   271 --KDSIKRSDYQLTIEPLLGQEAGGATQLTATGLLQRRQVFRQNLVERVKEHHKVFLASL 328

Query:   229 IPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQ 269
              P  T+PE    +R   + N V +   + PA+ P     E+
Sbjct:   329 NPPMTVPED-QLTRWHPRFN-VDEVPDIEPAELPQPPVTEK 367

GO:0000076 "DNA replication checkpoint" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA;ISO

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA;ISO

UNIPROTKB|Q9H211 CDT1 "DNA replication factor Cdt1" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 72/325 (22%), Positives = 138/325 (42%)

Query:     1 MSSSDSPQSIHF-RCKKP-ITAKPKPEMSNQNPNPTQLASK-TPEKQPSRRARNSRMALS 57
             +SS  +P++     C  P    K     + Q P+ T    + T  +  S   R   +   
Sbjct:    77 VSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGAR 136

Query:    58 LKEIRKAAQT-----NPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLA 112
             ++ ++ +AQ       P+   + + E  G++  A     +   P   G   LP KY  LA
Sbjct:   137 VRALKASAQDAGESCTPEAEGRPE-EPCGEKAPAYQRFHALAQPGLPGLV-LPYKYQVLA 194

Query:   113 ECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK--- 169
             E F S+D ++ +L  +  +PTF  +   ++ +  RRF   ++ Q+K + P   + ++   
Sbjct:   195 EMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPASYRFRQERS 254

Query:   170 VLTFDEKTSCMKPDLHVTVNADAI-ECDGKSK--CNSKNLNLRTVFRARLMDFLKDHPEG 226
             V TF + T   + D  +T+      E DG +     S+ L  R +F  +L++ +K+H + 
Sbjct:   255 VPTFKDGTR--RSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKA 312

Query:   227 ---DEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSK-L 282
                   P   +PE    +R   + N V +   + PA  P   + E+   +      ++ L
Sbjct:   313 FLASLSPAMVVPED-QLTRWHPRFN-VDEVPDIEPAALPQPPATEKLTTAQEVLARARNL 370

Query:   283 LNIVKAPSISMVTGTSASASDNQQP 307
             ++     ++S +   SA+ S    P
Sbjct:   371 ISPRMEKALSQLALRSAAPSSPGSP 395

GO:0006260 "DNA replication" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0000076 "DNA replication checkpoint" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000083 "regulation of transcription involved in G1/S phase of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1S6K4 CDT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
 Identities = 59/239 (24%), Positives = 105/239 (43%)

Query:    46 SRRARNSRMALSLKEIRKAAQT----NPQQPPKD--QIESAGKQISASPSVKSSVNPAGS 99
             SR  R   +   ++E+R++AQ     +P+ P ++    E  G+++ A     +   P   
Sbjct:   132 SRLQRAQELGAQVQELRESAQRKDAEDPRVPEEEGRPAEPGGEKMPAYQRFHALAQPGPP 191

Query:   100 GSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKF 159
             G   LP KY  LAE F SLD ++ LL  +  + TF  +   ++ +  +RF   +L Q+K 
Sbjct:   192 GLV-LPYKYQVLAEMFRSLDTIVGLLHNRSETVTFAKVKQGVQDMMRKRFEEHNLGQIKT 250

Query:   160 ILPEVIQIKK---VLTFDEKTSCMKPDLHVTVNADAIECDGKSKCN---SKNLNLRTVFR 213
             + P   + ++   + TF  K    + D  +T+     +  G +      S  L  R VF 
Sbjct:   251 VYPASYRFRQERFIPTF--KDGVRRSDYQLTLEPLLDQPAGSAAPQLTASCLLQRRQVFS 308

Query:   214 ARLMDFLKDHPEG---DEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQ 269
               L+  +++H         P   +PE     R   + N V +   + PA+ P   +VE+
Sbjct:   309 QNLVARVREHHRAFLASLNPPMEVPED-QLMRWHPRFN-VDEVPDIEPAELPQPPTVEK 365

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000076 "DNA replication checkpoint" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

UNIPROTKB|F1MCJ1 CDT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 73/321 (22%), Positives = 140/321 (43%)

Query:     6 SPQSIHFRCKKPITAKPKPEMSNQ-NPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKA 64
             SPQS   + K   +A  +P ++ Q N  P+++   T  +  S   R   +    +E++ +
Sbjct:   113 SPQSKETK-KAARSAGGRPCLAAQENKVPSKV---TLSELKSCLQRAQELGARFQELKAS 168

Query:    65 AQTNPQQP--PKDQ---IESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLD 119
             AQ +  +P  P+D+    E  G+Q+ A     +   P   G   LP KY  L+E F S+D
Sbjct:   169 AQKDAGEPSAPEDEGRLEEPCGEQMPAYQRFHALAQPGLPGLV-LPYKYQVLSEMFRSMD 227

Query:   120 AVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTFDEK 176
              ++ +L  +  + TF  +   ++ +  +RF   ++ Q+K + P     ++   V TF  K
Sbjct:   228 TIVGMLYNRSETVTFAKVKQGVQDMMRKRFEERNVGQIKTVYPGSYHFRQERFVPTF--K 285

Query:   177 TSCMKPDLHVTVNADAIECDGKSKCN---SKNLNLRTVFRARLMDFLKDHPEG---DEIP 230
                 + D  +T+     +  G +      S+ L  R VF   L+  +++H         P
Sbjct:   286 DGIKRSDYQLTIEPLLDQQAGSAAPQLTASRLLQRRQVFSQNLVARVREHHRAFLASLNP 345

Query:   231 EETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSK-LLNIVKAP 289
                +PE    +R   + N V     + PA+ P   +VE+   +      ++ L++     
Sbjct:   346 PMEVPED-QLTRWHPRFN-VDGVPDIEPAELPQPPAVEKLTTAQEVLARARSLMSPRMEK 403

Query:   290 SISMVTGTSASASDNQQPIVA 310
             ++S +   +A  S  + P +A
Sbjct:   404 ALSDLAQRTAEPSSPRSPSLA 424

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000076 "DNA replication checkpoint" evidence=IEA

MGI|MGI:1914427 Cdt1 "chromatin licensing and DNA replication factor 1" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 69/316 (21%), Positives = 130/316 (41%)

Query:    14 CKKPIT-AKPKPEMSNQNPNPTQLASKTPEKQPS-RRARNSRMALSLKEIRKAAQTNPQQ 71
             C  P+   K       Q P          E Q   RRAR  ++    + +R   Q N  +
Sbjct:   105 CPSPVKRTKSTTVYVGQQPGKIPSEDSVSELQSCLRRAR--KLGAQARALRARVQENAVE 162

Query:    72 P--PKDQIESAGKQISASPSVKSSVNPAGSGSPKL--PAKYMQLAECFDSLDAVIRLLKL 127
             P  P  ++ +    +  +P+ +     A  G P L  P KY  L E F S+D ++ +L  
Sbjct:   163 PSTPDAKVPTEQPCVEKAPAYQRFHALAQPGLPGLVLPYKYQVLVEMFRSMDTIVSMLHN 222

Query:   128 KCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTFDEKTSCMKPDL 184
             +  + TF  +   ++ +  +RF   ++ Q+K + P   + ++   V TF  K S  + D 
Sbjct:   223 RSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPTSYRFRQECNVPTF--KDSIKRSDY 280

Query:   185 HVTVNAD-AIECDGKSKCNSKNL-NLRTVFRARLMDFLKDHPE---GDEIPEETLPEPFN 239
              +T+      E  G ++  +  L   R VFR  L++ +K+  +       P   +P+   
Sbjct:   281 QLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDD-Q 339

Query:   240 RSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLL---NIVKAPS-ISMVT 295
              +R   + N V +   + PA+ P     E+   +      ++ L    + KA S +++ +
Sbjct:   340 LTRWHPRFN-VDEVPDIEPAELPQPPVTEKLTTAQEVLARARSLMTPKMEKALSNLALRS 398

Query:   296 GTSASASDNQQPIVAS 311
                 S   +  P+ A+
Sbjct:   399 AEPGSPGTSTPPLPAT 414

GO:0000076 "DNA replication checkpoint" evidence=ISO;IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IDA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=ISO;IDA

ZFIN|ZDB-GENE-070111-1 cdt1 "chromatin licensing and DNA replication factor 1" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 52/207 (25%), Positives = 89/207 (42%)

Query:    26 MSNQNPNP----TQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAG 81
             +S  +P P    T+L ++    +        R A  + E  KAA+T P   P+++ +   
Sbjct:   245 VSTPSPGPVSTLTELKARLDAAREISAKVQQRKAERVIEEAKAAETQPATEPQEREKLPA 304

Query:    82 KQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKI 141
              Q     ++   V P  +    LP +Y  LAE F SL+ ++ +L  +  + TFT +   +
Sbjct:   305 YQ--RYHTLAQDVPPGLT----LPYQYKLLAEMFRSLETIVAMLFNRSETVTFTKVKQGV 358

Query:   142 ECLTDRRFSLGHLAQLKFILPEVI---QIKKVLTFDEKTSCMKPDLHVTVNADAIECDGK 198
             + +  +RF   HL Q+K + P      Q K +++F          L V    D  E  G 
Sbjct:   359 QDMMRKRFEESHLGQIKAVYPSAYTFRQEKNIISFSATAKRSSYQLTVEPVIDE-EFKGV 417

Query:   199 SKCNSKN--LNLRTVFRARLMDFLKDH 223
                 S +  L  R +F   L++ +K H
Sbjct:   418 RPVLSASRLLERRHIFHQNLVEIVKGH 444

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3L5Z3 PRG4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 58/257 (22%), Positives = 106/257 (41%)

Query:   258 PADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDN-QQPIVASHFSSR 316
             PA   ++AS     +  PT       N  K+   S V  T  +  ++ ++P V +  +  
Sbjct:   831 PAPITSEASTSTTTMEPPTTPK----NSAKSTPESAVEPTPKAVENSPKEPTVPT--TKA 884

Query:   317 RHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSS 376
                ++  + + A+ K  E+     +I   TT A +         EE  S + I+  +++S
Sbjct:   885 PTVTKPEMTTRAKDKDTEK--DMYTIPEMTTAAPKTVTETAIKTEEKASESKITTTQVTS 942

Query:   377 KSTSKENCLTYCASPTRLSQSCPPV--TPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTP 434
               T  E+  T   +  + +   P V  T  K  +   SK      +  +++T ++ V+TP
Sbjct:   943 TPT--EDTTTSSKTTLKPTTLVPKVMTTTKKTTEKAMSKPEQTTSIPKDRATNSQ-VTTP 999

Query:   435 ARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFD-TPVKNATVEHKL 493
              +    T A  +P      P+      P K T  PP S T    K   T V  AT++   
Sbjct:  1000 -KPPKPTKAPKKPTST-KKPKAPKGRKP-KTTPTPPKSTTSVLPKTSPTAVAEATLQTTT 1056

Query:   494 NEDISVDGDVLDILPEN 510
                 +++ +++DI P+N
Sbjct:  1057 IPQQTLNSEIIDINPKN 1073

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

POMBASE|SPAPB15E9.01c SPAPB15E9.01c "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 127 (49.8 bits), Expect = 0.00024, P = 0.00024
 Identities = 64/281 (22%), Positives = 110/281 (39%)

Query:   241 SRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSAS 300
             S S    ++   ST+ T + +PT +S     +SS    NS   + + + S++  T  +A+
Sbjct:   151 SSSTTSSSLASSSTNSTTSATPT-SSATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209

Query:   301 ASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEP-CLRKISS 359
             +S       ++  +S    S    ++ +    +  ISS VS   S+TP          +S
Sbjct:   210 SSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVS---SSTPLTSSNSTTAATS 266

Query:   360 IEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIK 419
                T S+A  +   L   ST     L+   S T  S S  P+T V       +  S P+ 
Sbjct:   267 ASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS-STPLS 325

Query:   420 -VDSEQSTPAKLVS-TPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKS 477
              V S  ST A   S TP   +  T A         +  + +A+S +       +S +  S
Sbjct:   326 SVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATS 385

Query:   478 LKFDTPVKNATVEHKLNEDISVDG-DVLDILPENLIQSVSL 517
                 TP+ +A      +   +    +   +LP + + S  L
Sbjct:   386 AS-STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPL 425

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_V0549 hypothetical protein (564 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	537
cd08674	185	cd08674, Cdt1_m, The middle winged helix fold of r	8e-47
pfam08839	163	pfam08839, CDT1, DNA replication factor CDT1 like	2e-32
smart01075	164	smart01075, CDT1, DNA replication factor CDT1 like	5e-24

>gnl|CDD|176571 cd08674, Cdt1_m, The middle winged helix fold of replication licensing factor Cdt1 binds geminin to inhibit binding of the MCM complex to origins of replication and DNA

 Score =  161 bits (409), Expect = 8e-47
 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 5/178 (2%)

Query: 91  KSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFS 150
             S+  +   S KLP KY  LAE F SLD ++RLL  +  + TF  + P +E +T RRFS
Sbjct: 6   YHSLASSVRPSLKLPEKYEVLAELFRSLDTIVRLLFNRKETCTFDKLKPAVERMTRRRFS 65

Query: 151 LGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKN----L 206
             HLAQ+K I PE   +++    DE + C KPD  +T+  + +E          +    L
Sbjct: 66  EKHLAQIKHIYPEAYTLRQEKNHDEGSLCKKPDYQLTLEPNLVEGLELGGSPKLSESRLL 125

Query: 207 NLRTVFRARLMDFLKDHPEGDEIPEET-LPEPFNRSRSDLQLNMVKKSTSLTPADSPT 263
             R VFR+RL+DF+K H E   I  +   P P ++         ++    + PA+ P 
Sbjct: 126 ARRQVFRSRLLDFVKAHHEEFLISLDPPPPIPDDKLTRWHPKFDLESVPDIEPAELPQ 183

Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the origin recognition complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replication origins in the G phase, ORC first binds origin DNA and triggers the binding of Cdc6 and Cdt1. These two factors recruit a putative replicative helicase and the MCM2-7. The MCM2-7 complex promotes the unwinding of DNA origins, and the binding of additional factors to initiate the DNA replication in S-phase. Cdt1 is present during G1 and early S phase of the cell cycle and degraded during the late S, G2, and M phases. The winged helix fold structure of Cdt1_m is similar to the structures of Cdt1_c and other archaeal homologues of the eukaryotic replication initiator, without apparent sequence similarity. Length = 185

>gnl|CDD|220037 pfam08839, CDT1, DNA replication factor CDT1 like

 Score =  121 bits (306), Expect = 2e-32
 Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F  LD V+R+L  +   PTF  + P ++ ++ +RFS  HLAQ+K I PE
Sbjct: 1   LPEKYEVLAEFFKGLDTVVRMLHNRGEKPTFPKLKPAVQRMSRKRFSEDHLAQIKHIYPE 60

Query: 164 VIQIK--KVLTFDEKTSCMKPDLHVTVNADAIECDG-KSKCNSKNLNLRTVFRARLMDFL 220
            I+IK  KV TF E T CMK  L +  N D I  DG K    S+ L  R +FR  L+DF+
Sbjct: 61  AIEIKQEKVPTFGEGTKCMKYQLTIEPNLDEIAEDGAKRLNASRLLERRQIFRRILVDFV 120

Query: 221 KDHPEGD 227
           K H E  
Sbjct: 121 KKHHEEF 127

CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin. Length = 163

>gnl|CDD|215014 smart01075, CDT1, DNA replication factor CDT1 like

 Score = 98.2 bits (245), Expect = 5e-24
 Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 5/127 (3%)

Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F  LD ++ +L  +  +PTF  + P ++ LT +RFS  HLAQ+K I PE
Sbjct: 1   LPEKYEVLAEMFKGLDTIVAMLLNRNETPTFAKLKPGVQNLTRKRFSEDHLAQIKHIYPE 60

Query: 164 VIQIKK---VLTFDEKTSCMKPDLHVTVNADAIECDGK--SKCNSKNLNLRTVFRARLMD 218
            I+ K+   V TF   T      L +  N +  +      S   S+ L  R VFR +L+ 
Sbjct: 61  AIEFKQEKNVKTFGSGTKVSTYQLTIEPNLEDEDRSKVRPSLNASRLLERRKVFRRKLVK 120

Query: 219 FLKDHPE 225
            +K+H +
Sbjct: 121 IVKEHHQ 127

CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	537
cd08674	185	Cdt1_m The middle winged helix fold of replication	100.0
PF08839	163	CDT1: DNA replication factor CDT1 like; InterPro:	100.0
KOG4762	498	consensus DNA replication factor [Replication, rec	99.84
KOG4762	498	consensus DNA replication factor [Replication, rec	99.79

>cd08674 Cdt1_m The middle winged helix fold of replication licensing factor Cdt1 binds geminin to inhibit binding of the MCM complex to origins of replication and DNA

Probab=100.00  E-value=5.3e-39  Score=299.83  Aligned_cols=155  Identities=39%  Similarity=0.549  Sum_probs=143.8

Q ss_pred             CCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEeecCCCCC
Q 009345           99 SGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTS  178 (537)
Q Consensus        99 ~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~~DegS~  178 (537)
                      .++++||+||+.|+++|++||++++||++|++.+||.+||++||+|+||+|++.|||||++|||+||.|++++.+++|++
T Consensus        14 ~~~~~lP~ky~~L~~~F~~ldtv~~~l~~R~~~~tf~~ik~~Ve~~~~r~f~~~~LaQI~~l~P~~y~~~~~~~~~~~~~   93 (185)
T cd08674          14 RPSLKLPEKYEVLAELFRSLDTIVRLLFNRKETCTFDKLKPAVERMTRRRFSEKHLAQIKHIYPEAYTLRQEKNHDEGSL   93 (185)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHCCCccHHHhhhhheeccCceeEEEEEeccCccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEecccccC----CCCcchhhhHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCC---CCcchhhhhhh
Q 009345          179 CMKPDLHVTVNADAIECD----GKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEE-TLPEPFN---RSRSDLQLNMV  250 (537)
Q Consensus       179 ckk~dYQLtL~PdlvE~d----~p~ks~S~LLeRRrvFrsrLLdfVK~HHE~~dIPEa-~LPEPFn---~~~~~l~l~a~  250 (537)
                      |++++|||+|+|+++++.    .+.++++.+++||++||++|++||++||++.+++++ +++.+++   +-+++|+||.|
T Consensus        94 ~~~~~~~l~i~p~~~e~~~~~~~~~~~~~~~~~R~~~F~~~L~~~vk~hh~~fl~~~~~~~~~~~~~~~rwhp~f~le~v  173 (185)
T cd08674          94 CKKPDYQLTLEPNLVEGLELGGSPKLSESRLLARRQVFRSRLLDFVKAHHEEFLISLDPPPPIPDDKLTRWHPKFDLESV  173 (185)
T ss_pred             ccccceEEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhccccCccCCCCCC
Confidence            999999999999999975    368899999999999999999999999999999998 6666665   44568888886


Q ss_pred             ccc
Q 009345          251 KKS  253 (537)
Q Consensus       251 ~~~  253 (537)
                      .+-
T Consensus       174 ~~i  176 (185)
T cd08674         174 PDI  176 (185)
T ss_pred             CCc
Confidence            654

Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the origin recognition complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative

>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin

Probab=100.00  E-value=5.2e-36  Score=273.14  Aligned_cols=141  Identities=35%  Similarity=0.584  Sum_probs=102.1

Q ss_pred             CchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEE---EeecCCCCCCC
Q 009345          104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTFDEKTSCM  180 (537)
Q Consensus       104 LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irq---Ik~~DegS~ck  180 (537)
                      ||++|+.|+++|++||||++||++|++++||.+|+++||+|+||+|++.||||||||||+||.|++   ++.++.++  .
T Consensus         1 LP~~y~~L~~~F~~ldtv~~~l~~R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI~~i~P~a~~~~~~~~~~~~~~~~--~   78 (163)
T PF08839_consen    1 LPEKYEFLAELFRALDTVVSMLRNRKETPTFQKIKPSVENMTKRRFTEEHLAQIKYIYPEAYSLKQEKKVPTFDSGS--K   78 (163)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTT---BHHHHHHHHHHHHSS---HHHHHHHHHH-GGGEEEEEEE--SS--S-----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcCHHHHHHHHHhCcccEEEeeeeccccCCccc--c
Confidence            899999999999999999999999999999999999999999999999999999999999999994   55566644  4


Q ss_pred             CCCceEEEEecccc----cCCCCcchhhhHHHHHHHHHHHHHHHHhCCCC------CCCCCCCCCCCCCCCcchhhhhhh
Q 009345          181 KPDLHVTVNADAIE----CDGKSKCNSKNLNLRTVFRARLMDFLKDHPEG------DEIPEETLPEPFNRSRSDLQLNMV  250 (537)
Q Consensus       181 k~dYQLtL~PdlvE----~d~p~ks~S~LLeRRrvFrsrLLdfVK~HHE~------~dIPEa~LPEPFn~~~~~l~l~a~  250 (537)
                      ...|+|+|.|++.+    +....++++.+++||++||++|++||++||++      .. |++.|.+.    +++|+||.+
T Consensus        79 ~~~~~l~I~p~~~~~~~~~~~~~~~~~~~~~R~~~F~~~L~~~vk~~h~~fL~~l~~~-~~~~l~rw----Hp~F~~~~~  153 (163)
T PF08839_consen   79 CMKYQLVIEPNLDDVEASDGRKRLSPSRLLERRQVFRQKLLEFVKEHHKEFLASLNPP-PDDKLTRW----HPKFNLDSC  153 (163)
T ss_dssp             GGGEEEEEEE-SS---TT--SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTS--CCC--S------TTS-CCCS
T ss_pred             ccCcceEEEeccccccccccccCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHhcCCC-chhhHhhc----CCCCCcccC
Confidence            55788899999864    23367889999999999999999999999987      22 66666643    777777765


Q ss_pred             c
Q 009345          251 K  251 (537)
Q Consensus       251 ~  251 (537)
                      -
T Consensus       154 p  154 (163)
T PF08839_consen  154 P  154 (163)
T ss_dssp             -
T ss_pred             C
Confidence            4

Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.

>KOG4762 consensus DNA replication factor [Replication, recombination and repair]

Probab=99.84  E-value=1.1e-20  Score=198.96  Aligned_cols=325  Identities=24%  Similarity=0.271  Sum_probs=234.6

Q ss_pred             CCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEeecCCCCCCC
Q 009345          101 SPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCM  180 (537)
Q Consensus       101 sL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~~DegS~ck  180 (537)
                      ...+|+.|+.|..+|..+|.++.+...|+ .++|.+.++..+.++.++|.+.|++|++||+|+++.+..++.+|++.+||
T Consensus        42 ~~k~~~~~~~l~~~~~~ld~~~~~q~~r~-~~l~~~~~~~~~s~ta~~~~~~~~~e~~~iip~~~~lk~~~~~d~~e~~~  120 (498)
T KOG4762|consen   42 RAKLPHENNILIKFFQVLDMSMGLQKLRG-KCLRSNRKSSIRSLTARILHYMHKPELDHIIPGLKELKRVLKFDEHECCM  120 (498)
T ss_pred             hhhcchhhhhHHHHHHHHHHhhhhhcccC-CcccccCCcchhhhhhcccccccccchhhhhhhhhhhhcccccccchhcc
Confidence            56899999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEecccccCCCCcchhhhHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcchhhhhhhcccCCCCCCC
Q 009345          181 KPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPAD  260 (537)
Q Consensus       181 k~dYQLtL~PdlvE~d~p~ks~S~LLeRRrvFrsrLLdfVK~HHE~~dIPEa~LPEPFn~~~~~l~l~a~~~~~~~~~~~  260 (537)
                      +..++..++.++++..+.+ .+..+++.|++|+..+..+.+.|.+.+.++.++||++||+....        +.+     
T Consensus       121 k~~~~~~lna~~ve~s~~~-lp~ky~~L~kvF~~~d~~~~~~h~~~~~~t~~~L~~~v~~~~r~--------~fs-----  186 (498)
T KOG4762|consen  121 KPGLHESLNADLVEPSIRG-LPEKYRALRKVFRSMDGIVAKAHPQNRKPTFELLPEPVNRMFRK--------SFS-----  186 (498)
T ss_pred             cccccchhhhhhhccccCC-chHHHHHHHHHHHHhhhhhhhcccccCCCchhhccchhhhhhhc--------ccc-----
Confidence            9999999999999966544 77999999999999999999999999999999999999987765        322     


Q ss_pred             CCCchhhhhhccCCCccccccccccccCCccccccccCCCccccccchhccccccccchhhhhhhhHHHhhhhhhcCCCc
Q 009345          261 SPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGV  340 (537)
Q Consensus       261 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ash~~~~r~fSqk~~~~~~~~~~~~~~~~~~  340 (537)
                         .-|+.|+----|                                 .+-+|.+.+-+.+-...+.+.  -..-+....
T Consensus       187 ---n~hl~qIksv~p---------------------------------~s~~i~~~~t~~~f~~~~~~~--~y~l~i~p~  228 (498)
T KOG4762|consen  187 ---NTHLAQIKSLYP---------------------------------ESYIIRQLETIQRFKAGAKLD--DYELIIKPN  228 (498)
T ss_pred             ---cchhhhhhcccc---------------------------------cceeechhhhhhccccccccc--cceEecccc
Confidence               112222110000                                 011222211111110011100  022223333


Q ss_pred             ccCCC-CCCCCccccccccchhhhcccccchhhhhcccccCccccccccCCCCCcCCCCCCCCCccccCCCCCCCCcccc
Q 009345          341 SIEPS-TTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIK  419 (537)
Q Consensus       341 ~~~~s-~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tp~k~~~~~~~~~~~~~k  419 (537)
                      ..|.. +.|.+.+.......+--++.....+++        +.          +..+.|++.+|..++..          
T Consensus       229 l~~~~~~~~~~~~~~~~~r~q~~s~~~~~~~~i--------k~----------~~~~~~~~lsp~~Vd~e----------  280 (498)
T KOG4762|consen  229 LSQENGAVPQPVKSASTPRKQYLSPELFLFTPI--------KS----------HHKQALPSLSPAIVDGE----------  280 (498)
T ss_pred             ccccccccccccccccccchhhhhhhhhccCcC--------ch----------hhhcccccCCcccccch----------
Confidence            33433 445555554444455555556666666        54          67788889988877632          


Q ss_pred             cccccCCCccccccchhhhccCCCCCCCCcc--cCCCCCCCCCCCccccc-------CCCCccccccccCC-Ccccchhh
Q 009345          420 VDSEQSTPAKLVSTPARLMIGTPALHQPKRC--YMTPENVSASSPNKLTR-------RPPHSRTLKSLKFD-TPVKNATV  489 (537)
Q Consensus       420 ~~~~~~tpak~~stp~rlm~~tp~l~~~kr~--~~~~~~~s~~~p~kl~r-------rp~~sr~l~~~~f~-tp~k~~~~  489 (537)
                       .+...|+..|+.+|++.|..+..+++|.+|  ....+.++.....+.-|       -+...|++   .|+ +| .    
T Consensus       281 -~~ltr~~~~f~~~~~~~i~~s~~~~~~~~ek~~~a~e~~s~~~~~~~p~l~~~~~~~~~~~rS~---~s~~sp-~----  351 (498)
T KOG4762|consen  281 -ESLTRTHPEFALEPHVKICHSEFLEPPGTEKDSTANEPLSDFRNDKSPRLPLSVDEYPEDLRSM---RSDGSP-S----  351 (498)
T ss_pred             -hhhhhccccccccccccccccccCCCCcccccccCcCcccccccccCcchhhcccccccccccc---cccCCC-c----
Confidence             366788889999999999999999999999  34566677666666111       12333333   565 23 1    


Q ss_pred             hcccccCCCCCchhhcccchHHHHHHH
Q 009345          490 EHKLNEDISVDGDVLDILPENLIQSVS  516 (537)
Q Consensus       490 e~~~~~~~s~d~~~l~~lp~~l~qsi~  516 (537)
                       .-..++...|++.|+.++.+|++-|.
T Consensus       352 -tvp~s~~~~~~s~ls~~~~sLlErIR  377 (498)
T KOG4762|consen  352 -TVPESTSKADSSQLSGRASSLLERIR  377 (498)
T ss_pred             -cCCCCCcccChhhhccchHHHHHHHH
Confidence             11123355788999999999999885

>KOG4762 consensus DNA replication factor [Replication, recombination and repair]

Probab=99.79  E-value=5.8e-20  Score=193.46  Aligned_cols=123  Identities=24%  Similarity=0.350  Sum_probs=114.7

Q ss_pred             CchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEeec-CCCCCCCCC
Q 009345          104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTF-DEKTSCMKP  182 (537)
Q Consensus       104 LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~~-DegS~ckk~  182 (537)
                      |||||+.|+++|++||++++|+|+|+++|||.+|..+|+.|+|++|+..||+|||||||++|.|++..++ .++.+....
T Consensus       140 lp~ky~~L~kvF~~~d~~~~~~h~~~~~~t~~~L~~~v~~~~r~~fsn~hl~qIksv~p~s~~i~~~~t~~~f~~~~~~~  219 (498)
T KOG4762|consen  140 LPEKYRALRKVFRSMDGIVAKAHPQNRKPTFELLPEPVNRMFRKSFSNTHLAQIKSLYPESYIIRQLETIQRFKAGAKLD  219 (498)
T ss_pred             chHHHHHHHHHHHHhhhhhhhcccccCCCchhhccchhhhhhhcccccchhhhhhcccccceeechhhhhhccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999977776 456677888


Q ss_pred             CceEEEEeccccc--CCCCcchhhhHHHHHHHHHHHHHH--HHhCCCC
Q 009345          183 DLHVTVNADAIEC--DGKSKCNSKNLNLRTVFRARLMDF--LKDHPEG  226 (537)
Q Consensus       183 dYQLtL~PdlvE~--d~p~ks~S~LLeRRrvFrsrLLdf--VK~HHE~  226 (537)
                      +|||.+.|++...  ..+...++..+.|+++|-..|..+  ++.||.+
T Consensus       220 ~y~l~i~p~l~~~~~~~~~~~~~~~~~r~q~~s~~~~~~~~ik~~~~~  267 (498)
T KOG4762|consen  220 DYELIIKPNLSQENGAVPQPVKSASTPRKQYLSPELFLFTPIKSHHKQ  267 (498)
T ss_pred             cceEeccccccccccccccccccccccchhhhhhhhhccCcCchhhhc
Confidence            9999999999884  457888889999999999999999  9999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	537
2wvr_C	546	Human Cdt1:geminin Complex Length = 546		5e-09
2zxx_C	197	Crystal Structure Of Cdt1GEMININ COMPLEX Length = 1		3e-04

>pdb|2WVR|C Chain C, Human Cdt1:geminin Complex Length = 546

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F S+D ++ +L  +  +PTF  +   ++ +  RRF   ++ Q+K + P 
Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEERNVGQIKTVYPA 245
Query: 164 VIQIKK---VLTFDEKTSCMKPDLHVTVN-ADAIECDGKSK--CNSKNLNLRTVFRARLM 217
             + ++   V TF + T   + D  +T+      E DG +     S+ L  R +F  +L+
Sbjct: 246 SYRFRQERSVPTFKDGTR--RSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLV 303
Query: 218 DFLKDH 223
           + +K+H
Sbjct: 304 EHVKEH 309

>pdb|2ZXX|C Chain C, Crystal Structure Of Cdt1GEMININ COMPLEX Length = 197

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 84  ISASPSVKSSVNPAGSGSPKL--PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKI 141
           +  +P+ +     A  G P L  P KY  L E F S D ++  L  +  + TF  +   +
Sbjct: 6   VEKAPAYQRFHALAQPGLPGLVLPYKYQVLVEXFRSXDTIVSXLHNRSETVTFAKVKQGV 65
Query: 142 ECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTFDEKTSCMKPDLHVTVN-ADAIECDG 197
           +    +RF   ++ Q+K + P   + ++   V TF  K S  + D  +T+      E  G
Sbjct: 66  QEXXRKRFEERNVGQIKTVYPTSYRFRQECNVPTF--KDSIKRSDYQLTIEPLLGQEAGG 123
Query: 198 KSKCNSK-NLNLRTVFRARLMDFLKDH 223
            ++  +   L  R VFR  L++ +K+ 
Sbjct: 124 ATQLTATCLLQRRQVFRQNLVERVKEQ 150
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	537
1wlq_C	201	CDT1 protein; coiled-coil; 2.80A {Mus musculus} SC	1e-27
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} SCOP: a.4.5.52 PDB: 2zxx_C* Length = 201

 Score =  109 bits (272), Expect = 1e-27
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 6/158 (3%)

Query: 92  SSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSL 151
            ++   G     LP KY  L E F S+D ++ +L  +  + TF  +   ++ +  +RF  
Sbjct: 20  HALAQPGLPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEE 79

Query: 152 GHLAQLKFILPEVIQIKKVLTFDEKTSCMKPD---LHVTVNADAIECDGKSKCNSKNLNL 208
            ++ Q+K + P   + ++          +K     L +                +  L  
Sbjct: 80  RNVGQIKTVYPMSYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQR 139

Query: 209 RTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQ 246
           R VFR  L++ +K+     ++   +L  P       L 
Sbjct: 140 RQVFRQNLVERVKEQ---HKVFLASLNPPMAVPDDQLT 174

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 86.3 bits (212), Expect = 5e-18
 Identities = 55/306 (17%), Positives = 109/306 (35%), Gaps = 11/306 (3%)

Query: 21  KPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQ-TNPQQPPKDQIES 79
           K  P         +     T  +  S   R   +   ++ ++ +AQ       P+ +   
Sbjct: 100 KSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRP 159

Query: 80  AGKQISASPSVKSSVNPAGSGSPKL--PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSI 137
                  +P+ +     A  G P L  P KY  LAE F S+D ++ +L  +  +PTF  +
Sbjct: 160 EEPCGEKAPAYQRFHALAQPGLPGLVLPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKV 219

Query: 138 CPKIECLTDRRFSLGHLAQLKFILPEVI---QIKKVLTFDEKTSCMKPDLHVTVNADAIE 194
              ++ +  RRF   ++ Q+K + P      Q + V TF + T      L +    +   
Sbjct: 220 QRGVQDMMRRRFEERNVGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLTIEPLLEQEA 279

Query: 195 CDGKSKCN-SKNLNLRTVFRARLMDFLKDHPE----GDEIPEETLPEPFNRSRSDLQLNM 249
                +   S+ L  R +F  +L++ +K+H +              +   R      ++ 
Sbjct: 280 DGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLTRWHPRFNVDE 339

Query: 250 VKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIV 309
           V           P    +   Q      +N     + KA S   +   + S+  + +P +
Sbjct: 340 VPDIEPAALPQPPATEKLTTAQEVLARARNLISPRMEKALSQLALRSAAPSSPGSPRPAL 399

Query: 310 ASHFSS 315
            +   +
Sbjct: 400 PATPPA 405

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 68/482 (14%), Positives = 139/482 (28%), Gaps = 131/482 (27%)

Query: 107 KYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGH-LAQLKFILPEVI 165
           +Y  +   F   DA +     K       SI  K E   D        ++    +    +
Sbjct: 17  QYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLF-WTL 71

Query: 166 QIKK---VLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMD---- 218
             K+   V  F E    ++ +    ++    E    S        +    R RL +    
Sbjct: 72  LSKQEEMVQKFVE--EVLRINYKFLMSPIKTEQRQPSM----MTRMYIEQRDRLYNDNQV 125

Query: 219 FLKDHPEGDEIPEETLPEPFNRSRSDL-QLN---------MV---KKSTSLTPADSPTDA 265
           F K +     +      +P+ + R  L +L          ++   K  T +   D     
Sbjct: 126 FAKYN-----VSR---LQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVA-LDVCLSY 174

Query: 266 SVEQQQ------VSSPTCQNSK-LLNIVKAPSISMVTGTSASASDNQQPIVASHFSS--- 315
            V+ +       ++   C + + +L +++     +    ++ +  +    +  H      
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 316 RRHFSQK-FVNSLAEKKKAERISSGVSIEPSTTPALEP-CLRKI------SSIEETCSTA 367
           RR    K + N L        +   V        A    C  KI        + +  S A
Sbjct: 235 RRLLKSKPYENCLL-------VLLNVQ-NAKAWNAFNLSC--KILLTTRFKQVTDFLSAA 284

Query: 368 AISAVEL--SSKSTSKENCLTYCASPTRLS-QSCPPVTPVKEIDPMESKVSYPIKVDSEQ 424
             + + L   S + + +   +          Q  P    V   +P               
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPR-------------- 328

Query: 425 STPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLK-SLKFDTP 483
                 +S     +I      +      T +N    + +KLT        ++ SL    P
Sbjct: 329 -----RLS-----IIA--ESIRDGLA--TWDNWKHVNCDKLTT------IIESSLNVLEP 368

Query: 484 VKNATVEHK--------LNEDISVDGDVLDILPENLI-QSVSLIM-----YFLLI-WPYY 528
                 E++              +   +L ++  ++I   V +++     Y L+   P  
Sbjct: 369 A-----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 529 RT 530
            T
Sbjct: 424 ST 425

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	537
1wlq_C	201	CDT1 protein; coiled-coil; 2.80A {Mus musculus} PD	100.0
2zxx_C	197	DNA replication factor CDT1; coiled-coil, cell cyc	100.0
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	100.0

>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*

Probab=100.00  E-value=3.8e-44  Score=339.32  Aligned_cols=151  Identities=21%  Similarity=0.312  Sum_probs=141.1

Q ss_pred             CCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEee-cCCCC
Q 009345           99 SGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLT-FDEKT  177 (537)
Q Consensus        99 ~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~-~DegS  177 (537)
                      .++|+||+||++|+|||+|||+|++||+||+++|||+|||++||+|+||+|+++|||||||||||||.|++++. ++.++
T Consensus        27 ~~~l~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l~~~k~~~~f~s  106 (201)
T 1wlq_C           27 LPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQECNVPTFKD  106 (201)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEEEECCSSCCS
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHhcCCcCHHHHHHHHHhccCceEEEeeeccccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999986 78899


Q ss_pred             CCCCCCceEEEEecccccC--CCCcchhhhHHHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCcchhhh
Q 009345          178 SCMKPDLHVTVNADAIECD--GKSKCNSKNLNLRTVFRARLMDFLKDHPEG--------DEIPEETLPEPFNRSRSDLQL  247 (537)
Q Consensus       178 ~ckk~dYQLtL~PdlvE~d--~p~ks~S~LLeRRrvFrsrLLdfVK~HHE~--------~dIPEa~LPEPFn~~~~~l~l  247 (537)
                      +|+..+|||+|+||+++..  ++.++++.+++||++||++|+++||+||++        ++||+++|.+.    +++|+|
T Consensus       107 ~~k~~~yqL~i~Pnv~~~~~~~~~ls~s~l~~Rr~~F~~~Ll~~Vk~~H~~FL~sl~~pi~i~~d~l~RW----HP~F~l  182 (201)
T 1wlq_C          107 SIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDDQLTRW----HPRFNV  182 (201)
T ss_dssp             CCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTCCSC----CTTCCG
T ss_pred             ccccCcceEEEecccccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCChhhcccc----CCCCCc
Confidence            9999999999999998744  478999999999999999999999999977        67899999988    899999


Q ss_pred             hhhccc
Q 009345          248 NMVKKS  253 (537)
Q Consensus       248 ~a~~~~  253 (537)
                      |.|-+=
T Consensus       183 d~vp~I  188 (201)
T 1wlq_C          183 DEVPDI  188 (201)
T ss_dssp             GGSCCC
T ss_pred             ccCCCC
Confidence            987654

>2zxx_C DNA replication factor CDT1; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=100.00  E-value=2.8e-38  Score=295.55  Aligned_cols=150  Identities=22%  Similarity=0.347  Sum_probs=132.1

Q ss_pred             CCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEee-cCCC
Q 009345           98 GSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLT-FDEK  176 (537)
Q Consensus        98 ~~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~-~Deg  176 (537)
                      +.++|+||+||+.|+++|++||+|++||++|++++||.+||++||+|+||+|++.|||||+||||+||.|++++. ++.+
T Consensus        22 ~~~~l~LP~ky~~L~~~F~~ld~v~~~l~~R~~~~tf~~lk~~Ve~~~~r~f~~~~LaqI~~l~P~a~~~~~~~~~~~~~  101 (197)
T 2zxx_C           22 GLPGLVLPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPTSYRFRQECNVPTFK  101 (197)
T ss_dssp             SSCSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHSSCCCHHHHHHHHHHCGGGEEEEEEECCSSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHcCCCCHHHHHHHHHhccCeeEEEEEecccccC
Confidence            346899999999999999999999999999999999999999999999999999999999999999999999874 6678


Q ss_pred             CCCCCCCceEEEEecccccCC--CCcchhhhHHHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCcchhh
Q 009345          177 TSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLRTVFRARLMDFLKDHPEG--------DEIPEETLPEPFNRSRSDLQ  246 (537)
Q Consensus       177 S~ckk~dYQLtL~PdlvE~d~--p~ks~S~LLeRRrvFrsrLLdfVK~HHE~--------~dIPEa~LPEPFn~~~~~l~  246 (537)
                      ++|+..+|||+|.|+++++.+  ..++++.+++||++||++|+++||+||+.        +.||++.|.+.    +++|+
T Consensus       102 ~~~~~~~yqL~i~p~~~~~~~~~~~~s~~~l~~R~~~Fr~~Ll~~Vk~~H~~fL~~l~~~~~~~~~~l~rW----HP~F~  177 (197)
T 2zxx_C          102 DSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDDQLTRW----HPRFN  177 (197)
T ss_dssp             SCCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCGGGCCSC----CTTCC
T ss_pred             CccccccceEEEeecCccccccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhcccc----CCCCC
Confidence            899999999999999988543  57889999999999999999999999976        33456665554    66677


Q ss_pred             hhhhc
Q 009345          247 LNMVK  251 (537)
Q Consensus       247 l~a~~  251 (537)
                      ||.|-
T Consensus       178 le~vp  182 (197)
T 2zxx_C          178 VDEVP  182 (197)
T ss_dssp             GGGSC
T ss_pred             cccCC
Confidence            77653

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A*

Probab=100.00  E-value=4.2e-34  Score=301.52  Aligned_cols=152  Identities=23%  Similarity=0.392  Sum_probs=125.0

Q ss_pred             CCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEeec-CCC
Q 009345           98 GSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTF-DEK  176 (537)
Q Consensus        98 ~~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~~-Deg  176 (537)
                      +.+++.||+||+.|+++|++||+|++||++|++.+||.||+++||+|++|+|++.||+||+||||+||.|++++.. ..+
T Consensus       180 ~~~~l~LP~ky~~L~elF~alDtvlslL~~R~~~~tf~kI~~~Ve~mtkrrFt~~hLaQI~~I~PeaY~l~~~k~~~~f~  259 (546)
T 2wvr_C          180 GLPGLVLPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEERNVGQIKTVYPASYRFRQERSVPTFK  259 (546)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHSSCCCHHHHHHHHHHCGGGEEEEEC-------
T ss_pred             CCccccCcHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHcCCccHHHHHHHHHhccchhhhhhhhcccccc
Confidence            3468999999999999999999999999999999999999999999999999999999999999999999965332 335


Q ss_pred             CCCCCCCceEEEEecccccC---CCCcchhhhHHHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCcchh
Q 009345          177 TSCMKPDLHVTVNADAIECD---GKSKCNSKNLNLRTVFRARLMDFLKDHPEG--------DEIPEETLPEPFNRSRSDL  245 (537)
Q Consensus       177 S~ckk~dYQLtL~PdlvE~d---~p~ks~S~LLeRRrvFrsrLLdfVK~HHE~--------~dIPEa~LPEPFn~~~~~l  245 (537)
                      ++|++++|||+|+|++.+..   .+.++.+.+++||++||++|++||++||++        ++||+++|++++    ++|
T Consensus       260 s~~k~~dyqL~I~P~l~~e~~~~~~~~s~s~l~~Rr~~Fr~rL~~~Vk~hHe~fL~sL~pp~~Ip~e~L~rwh----p~F  335 (546)
T 2wvr_C          260 DGTRRSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLTRWH----PRF  335 (546)
T ss_dssp             --------CEEEEECCCCCTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCCCCGGGCCSCC----TTC
T ss_pred             ccccCCCceEEEecCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCchhhccccC----CCC
Confidence            68999999999999887632   256889999999999999999999999998        799999999984    467


Q ss_pred             hhhhhccc
Q 009345          246 QLNMVKKS  253 (537)
Q Consensus       246 ~l~a~~~~  253 (537)
                      +||.|.+-
T Consensus       336 dle~vpdI  343 (546)
T 2wvr_C          336 NVDEVPDI  343 (546)
T ss_dssp             CSTTSCCC
T ss_pred             CccccCCc
Confidence            77766444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	537
d1wlqc_	187	a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (	5e-26

>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA replication factor Cdt1
domain: DNA replication factor Cdt1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (256), Expect = 5e-26
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 93  SVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLG 152
           ++   G     LP KY  L E F S+D ++ +L  +  + TF  +   ++ +  +RF   
Sbjct: 10  ALAQPGLPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEER 69

Query: 153 HLAQLKFILPEVIQIKKVLTF-DEKTSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLR 209
           ++ Q+K + P   + ++       K S  + D  +T+     +  G       +  L  R
Sbjct: 70  NVGQIKTVYPMSYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRR 129

Query: 210 TVFRARLMDFLKDH 223
            VFR  L++ +K+ 
Sbjct: 130 QVFRQNLVERVKEQ 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	537
d1wlqc_	187	DNA replication factor Cdt1 {Mouse (Mus musculus)	100.0

>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA replication factor Cdt1
domain: DNA replication factor Cdt1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-38  Score=295.12  Aligned_cols=150  Identities=22%  Similarity=0.344  Sum_probs=136.6

Q ss_pred             CCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEe-ecCCC
Q 009345           98 GSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVL-TFDEK  176 (537)
Q Consensus        98 ~~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk-~~Deg  176 (537)
                      +.++++||+||+.|+++|++||||++||++|++++||++||++||+|+||+|++.|||||+||||++|.|++++ .++.+
T Consensus        15 ~~~~l~LP~ky~~L~~~f~~ldtv~~~l~~R~~~~tf~~lk~~Ve~~~~r~ft~~~LaQI~~i~P~~~~~k~~~~~~~~~   94 (187)
T d1wlqc_          15 GLPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQECNVPTFK   94 (187)
T ss_dssp             SSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEEEECCSSCC
T ss_pred             CCCCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhCcccHHHHHHHHHhCccceEEEeeecccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999988 56668


Q ss_pred             CCCCCCCceEEEEecccccCC--CCcchhhhHHHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCcchhh
Q 009345          177 TSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLRTVFRARLMDFLKDHPEG--------DEIPEETLPEPFNRSRSDLQ  246 (537)
Q Consensus       177 S~ckk~dYQLtL~PdlvE~d~--p~ks~S~LLeRRrvFrsrLLdfVK~HHE~--------~dIPEa~LPEPFn~~~~~l~  246 (537)
                      ++|++.+|||+|.|+++++.+  +.++++.+++||++||++|+++|++||++        +-||.+.|...    +++|+
T Consensus        95 ~~~~~~~~ql~i~p~~~~~~~~~~~l~~s~~~~Rr~~Fr~~Ll~~Vk~~H~~fL~sl~~~~~~~~~~l~rW----HP~F~  170 (187)
T d1wlqc_          95 DSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDDQLTRW----HPRFN  170 (187)
T ss_dssp             SCCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTCCSC----CTTCC
T ss_pred             ccccccceeEEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhhcCcc----CCCCC
Confidence            899999999999999998654  57899999999999999999999999986        34478887765    88999


Q ss_pred             hhhhc
Q 009345          247 LNMVK  251 (537)
Q Consensus       247 l~a~~  251 (537)
                      ||.|-
T Consensus       171 le~vp  175 (187)
T d1wlqc_         171 VDEVP  175 (187)
T ss_dssp             GGGSC
T ss_pred             cccCC
Confidence            99873